Psyllid ID: psy16994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930--
Protein Sequence
MGAEGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNSTAGLAENVNLITPRRIFFLL
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHcccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHcccccccccccccccccccccccccccccccEEEcccEEEEcccHHHHHHHHHHHHHcccccccccccccccccHHEEEEEEEEcccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccHHHHHccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEcHHHHHHcccccccccEEEEEEEEccccccccHHHHHHHHHccHHHHHHHHHccccccEEEEEcccccccccEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHcccccEEEEEEHHcccccccHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEccHcccEEEEccccccccEEEcccEEEccccccEccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHEEEEccccccccccccccccccccccccccccHHccccccccccccHcHHHccccccccEEEEcc
Coil and Loop (DISEMBL)
mgaegtieqpgiiprTLNILFNslgpyldksdvlfrptyasnvsmlskEDRVQAFDVKKQILNSFdqsyagstfENVLEVLDqksimfkpmkdmkcsitdtcnlyrfsniygphttqAELFQNIVHNMLERYLNGEDALLFsfgttnsgktftiqdltyvnVHSCEEAYRVLRFGkshlsvaptelnhrssrshcvfsiklvkvdpgseeliMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLrennglkadkkklipfrdsKLTQIFQRSLSGLSSTVKMIVNvnaspayaEETVQVLKISSVARDLLtvakprhlpppprkktrFSIMAarnldwresDIVFQERasgemtdyfqgshddpyETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNqqaeddsedetlNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMErgaqtenkPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLEsnraesnqsaHDEQALQKEIKNLGSllvdkdktigDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNmenderstKHNQEKLLKIYEDRLKAVQDELAEMKCaqlkpsleasaatpsQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQrsplkglenqmakinidrspsgedtddpdflprsrckstskkrqlkkpsthlnstaglaenvnlitprriffll
Flexible Loop (DISEMBL)
mgaegtieqpgiipRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAptelnhrssrshcvfSIKLVKVDPGSEELIMMSSFDICDLAGAERQKrahtsgdrlreartinsslHVLARCFNVLrennglkadkkklipfrdsKLTQIFQRslsglsstvKMIVNVNASPAYAEETVQVLKISSVARDLLtvakprhlpppprkktrfsimaarnldwresdIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSlseehedmsgklkeltrenrdlvtknkelegkvaqlsRRVEemergaqtenkpeeVKYLKSLLDEAKEEFKEQTTEIEQLRseveklseerrlltvrsaeleyeleqrDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNlgsllvdkdktigdlkakihKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIknmenderstkhNQEKLLKIYEDRLKAVQDELAEMKCAQLKPsleasaatpsqYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRsplkglenqmakinidrspsgedtddpdflprsrckstskkrqlkkpsthlnstaglaenvnlitPRRIFFLL
Low Complexity Region (SEG)
MGAEGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAkprhlpppprkktrFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSqqqqqqqRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNSTAGLAENVNLITPRRIFFLL
Disordered region (IsUnstruct)
**********GIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAG******************TINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA**************FSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREV************************************YKTQIETLMT******************************************************************************************************************************************LTVRSAELEYELEQRDYLIAVKTDG***************************************************************LGSLLVDKDKTIGDLKAKIHKYEKYYAVMK****************CEELTQQVTKLEADCQSYLNT******************LKIYED****************************************************V*DLQLKL**********************************************************************************AENVNLITPRRIFFL*
Disordered Region (DISOPRED)
MGAEGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTF************************TDTCNLYRFSNIYGPHTTQAELFQNIVHNMLER******************KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK********IMMSSFDICDLAGAERQK*****GDRLREARTINSSLHVLARCFNVLRENN*******KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA********************************************************************************************************************************************************************************************************************************************************************KLSEE******************************************************************************************************************************************************************************************************************************************************************************************************************************************ITPRRIFFLL
Disordered Region (DISEMBL)
********QPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGA************LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN*************ESAIEAQHKLKIQNLKQELSELEAKYKS**********KLKELTRENRDLVTKNKELEGKVAQLSR*************KPEEVKYLKSLLDEAK*************RSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD***************QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKA*****************GLENQMAKINIDR**********DFLPRS****************HLNSTAGLAENVNLITPRRIFFLL
Disordered Region (DISPRO)
*****TIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAG***********DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDW******************************************************EYR*VQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAES***AHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN***************LPRS*C***********P**HLNSTAGLAENVNLITPRRIFFLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAEGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKNQQAEDDSEDETLNESAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAQTENKPEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEQRDYLIAVKTDGxxxxxxxxxxxxxxxxxxxxxYERLxxxxxxxxxxxxxxxxxxxxxSNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLKPSLEASAATPSQYxxxxxxxxxxxxxxxxxxxxxVRDLQLKxxxxxxxxxxxxxxxxxxxxxQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNSTAGLAENVNLITPRRIFFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	932	2.2.26 [Sep-21-2011]
P97329	887	Kinesin-like protein KIF2	yes	N/A	0.342	0.359	0.310	1e-37
Q29RT6	888	Kinesin-like protein KIF2	yes	N/A	0.335	0.352	0.311	1e-37
O95235	890	Kinesin-like protein KIF2	no	N/A	0.334	0.350	0.315	3e-37
Q96Q89	1820	Kinesin-like protein KIF2	yes	N/A	0.318	0.163	0.333	6e-37
Q80WE4	1774	Kinesin-like protein KIF2	no	N/A	0.316	0.166	0.339	5e-36
Q9V877	628	Kinesin-like protein subi	yes	N/A	0.326	0.484	0.334	6e-31
Q02241	960	Kinesin-like protein KIF2	no	N/A	0.322	0.313	0.304	7e-29
P46872	699	Kinesin-II 85 kDa subunit	no	N/A	0.185	0.247	0.335	1e-21
O15066	747	Kinesin-like protein KIF3	no	N/A	0.180	0.224	0.357	2e-21
Q61771	747	Kinesin-like protein KIF3	no	N/A	0.180	0.224	0.357	3e-21

>sp|P97329|KI20A_MOUSE Kinesin-like protein KIF20A OS=Mus musculus GN=Kif20a PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 188/361 (52%), Gaps = 42/361 (11%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML-SKEDRVQ--------- 53
           +GT +  GI+P++L ++FNSL   L  +  L +P  ++ V  L SK+ R +         
Sbjct: 170 QGTSKDAGILPQSLALIFNSLQGQLHPTPDL-KPLLSNEVIWLDSKQIRQEEMKKLSLLI 228

Query: 54  --------AFDVKKQI--------LNSFDQSYAG---STFENVLEVLDQKSIMFKPMKDM 94
                   +  VKK++         NSFD   AG   ++       LD+ S ++     +
Sbjct: 229 GGLQEEELSTSVKKRVHTESRIGASNSFDSGVAGLSSTSQFTSSSQLDETSQLWAQPDTV 288

Query: 95  KCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
             S+        + + +       E++  +++++LE   +             +G  + +
Sbjct: 289 PVSVPADIRFSVWISFF-------EIYNELLYDLLEPPSHQHKRQTLRLCEDQNGNPY-V 340

Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
           +DL +++V   EEA+++L+ G+ + S A T +N +SSRSH +FSI+++ +    + +  +
Sbjct: 341 KDLNWIHVRDVEEAWKLLKVGRKNQSFASTHMNQQSSRSHSIFSIRILHLQGEGDIVPKI 400

Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
           S   +CDLAG+ER K    SG+RL+EA  IN+SLH L RC   LR+N   ++ K+ LIPF
Sbjct: 401 SELSLCDLAGSERCKH-QKSGERLKEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLIPF 458

Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP 334
           RDSKLT++FQ   +G   +  MIVNVN   +  +ET+   K S++A  L+  A P HL  
Sbjct: 459 RDSKLTRVFQGFFTGRGRSC-MIVNVNPCASTYDETLHAAKFSALASQLVH-APPVHLGI 516

Query: 335 P 335
           P
Sbjct: 517 P 517

Mitotic kinesin required for chromosome passenger complex (CPC)-mediated cytokinesis. Following phosphorylation by PLK1, involved in recruitment of PLK1 to the central spindle (By similarity). Interacts with guanosine triphosphate (GTP)-bound forms of RAB6A and RAB6B. May act as a motor required for the retrograde RAB6 regulated transport of Golgi membranes and associated vesicles along microtubules. Has a microtubule plus end-directed motility.
Mus musculus (taxid: 10090)

>sp|Q29RT6|KI20A_BOVIN Kinesin-like protein KIF20A OS=Bos taurus GN=KIF20A PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 183/360 (50%), Gaps = 47/360 (13%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML-SKEDRVQAF------- 55
           +GTI+  GI+PR+L ++FNSL   L  +  L +P +++ V  L SK+ R +         
Sbjct: 170 QGTIKDGGILPRSLALIFNSLQGQLHPTPNL-KPLFSNEVMWLDSKQIRQEELKKLALLN 228

Query: 56  ----------DVKKQIL--------NSFDQSYAG---STFENVLEVLDQKSIMFKPMKDM 94
                      +KK +          SFD   AG   S+       LD+ S  +     +
Sbjct: 229 GGLQEEELSTSLKKSVYIDSRMGTSTSFDSGIAGLSSSSQFPSSSQLDEMSHRWAQPDTV 288

Query: 95  KCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
             S+        + + +       E++  +++++LE                 +G  + +
Sbjct: 289 PVSVPADLRFSIWISFF-------EIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY-V 340

Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
           +DL +++V   EEA+++L+ G+ + S A T LN  SSRSH +FSI+++ +    + +  +
Sbjct: 341 KDLNWIHVQDAEEAWKLLKVGRKNQSFASTHLNQNSSRSHSIFSIRILHLQGEGDIIPKI 400

Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
           S   +CDLAG+ER K    SG+RL+EA  IN+SLH L RC   LR+N   ++ K+ L+PF
Sbjct: 401 SELSLCDLAGSERCKD-QKSGERLKEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVPF 458

Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP 334
           RDSKLT++FQ   +G   +  MIVNVN   +  +ET+ V K S++A  L+      H PP
Sbjct: 459 RDSKLTRVFQGFFTGRGRSC-MIVNVNPCASTYDETLHVAKFSAIASQLV------HAPP 511

Mitotic kinesin required for chromosome passenger complex (CPC)-mediated cytokinesis. Following phosphorylation by PLK1, involved in recruitment of PLK1 to the central spindle. Interacts with guanosine triphosphate (GTP)-bound forms of RAB6A and RAB6B. May act as a motor required for the retrograde RAB6 regulated transport of Golgi membranes and associated vesicles along microtubules. Has a microtubule plus end-directed motility.

Bos taurus (taxid: 9913)

>sp|O95235|KI20A_HUMAN Kinesin-like protein KIF20A OS=Homo sapiens GN=KIF20A PE=1 SV=1

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 181/361 (50%), Gaps = 49/361 (13%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GTI+  GI+PR+L ++FNSL   L  +  L +P  ++ V  L  +   Q    K  +LN
Sbjct: 171 QGTIKDGGILPRSLALIFNSLQGQLHPTPDL-KPLLSNEVIWLDSKQIRQEEMKKLSLLN 229

Query: 64  --------------------------SFDQSYAG---STFENVLEVLDQKSIMFKPMKDM 94
                                     SFD   AG    +       LD+ S         
Sbjct: 230 GGLQEEELSTSLKRSVYIESRIGTSTSFDSGIAGLSSISQCTSSSQLDETS--------H 281

Query: 95  KCSITDTCNLYRFSNI-YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153
           + +  DT  L   +NI +    +  E++  +++++LE                 +G  + 
Sbjct: 282 RWAQPDTAPLPVPANIRFSIWISFFEIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY- 340

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           ++DL +++V   EEA+++L+ G+ + S A T LN  SSRSH +FSI+++ +    + +  
Sbjct: 341 VKDLNWIHVQDAEEAWKLLKVGRKNQSFASTHLNQNSSRSHSIFSIRILHLQGEGDIVPK 400

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
           +S   +CDLAG+ER K    SG+RL+EA  IN+SLH L RC   LR+N   ++ K+ L+P
Sbjct: 401 ISELSLCDLAGSERCKD-QKSGERLKEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVP 458

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333
           FRDSKLT++FQ   +G   +  MIVNVN   +  +ET+ V K S++A  L+      H P
Sbjct: 459 FRDSKLTRVFQGFFTGRGRSC-MIVNVNPCASTYDETLHVAKFSAIASQLV------HAP 511

Query: 334 P 334
           P
Sbjct: 512 P 512

Mitotic kinesin required for chromosome passenger complex (CPC)-mediated cytokinesis. Following phosphorylation by PLK1, involved in recruitment of PLK1 to the central spindle. Interacts with guanosine triphosphate (GTP)-bound forms of RAB6A and RAB6B. May act as a motor required for the retrograde RAB6 regulated transport of Golgi membranes and associated vesicles along microtubules. Has a microtubule plus end-directed motility.

Homo sapiens (taxid: 9606)

>sp|Q96Q89|KI20B_HUMAN Kinesin-like protein KIF20B OS=Homo sapiens GN=KIF20B PE=1 SV=3

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 175/336 (52%), Gaps = 39/336 (11%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQIL- 62
           +GT E  GI+PRTLN+LF+SL   L  + +  +P  +     LS E   +    K  +L 
Sbjct: 163 QGTEENIGILPRTLNVLFDSLQERL-YTKMNLKPHRSREYLRLSSEQEKEEIASKSALLR 221

Query: 63  --------NSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFS------ 108
                   N  D +  GS   N L +    S   + +KD + +  +  N  +FS      
Sbjct: 222 QIKEVTVHNDSDDTLYGS-LTNSLNI----SEFEESIKDYEQANLNMANSIKFSVWVSFF 276

Query: 109 NIYGPHTTQAELFQNIVHNMLERYLN--GEDALLFSFGTTNSGKTFTIQDLTYVNVHSCE 166
            IY  +    +LF  +     +R +    +D   +SF          I+DL ++ V   +
Sbjct: 277 EIYNEYI--YDLFVPVSSKFQKRKMLRLSQDVKGYSF----------IKDLQWIQVSDSK 324

Query: 167 EAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV-DPGSEELIMMSSFDICDLAGA 225
           EAYR+L+ G  H SVA T+LN+ SSRSH +F++K++++ D     +I +S   +CDLAG+
Sbjct: 325 EAYRLLKLGIKHQSVAFTKLNNASSRSHSIFTVKILQIEDSEMSRVIRVSELSLCDLAGS 384

Query: 226 ERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQR 285
           ER  +    G+RLRE   IN+SL  L +C NVL+  N  K+  ++ +PFR+SKLT  FQ 
Sbjct: 385 ERTMKTQNEGERLRETGNINTSLLTLGKCINVLK--NSEKSKFQQHVPFRESKLTHYFQS 442

Query: 286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             +G    + MIVN++      +ET+ VLK S++A+
Sbjct: 443 FFNG-KGKICMIVNISQCYLAYDETLNVLKFSAIAQ 477

Plus-end-directed motor enzyme that is required for completion of cytokinesis.

Homo sapiens (taxid: 9606)

>sp|Q80WE4|KI20B_MOUSE Kinesin-like protein KIF20B OS=Mus musculus GN=Kif20b PE=1 SV=3

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 41/336 (12%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLS----KEDRVQAFDVKK 59
           +GT E  GI+PRTLN+LF+SL   L  + + F+P        LS    KE+      + +
Sbjct: 163 QGTEENIGILPRTLNVLFDSLQERL-YTKMSFKPHRCREYLKLSSDQEKEESANKNTLLR 221

Query: 60  QIL------NSFD-------QSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYR 106
           QI       +S+D        S     FE  +   DQ S+    + ++K S+        
Sbjct: 222 QIKEVTIHNDSYDVLCGHLTNSLTIPEFEESVNSCDQSSL---NVDNIKYSV-----WVS 273

Query: 107 FSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCE 166
           F  IY       +LF  +     +R +               G +F I+DL +V V   +
Sbjct: 274 FFEIYNESI--YDLFVPVSSKFQKRKM-------LRLSQDIKGYSF-IKDLQWVQVSDSK 323

Query: 167 EAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV-DPGSEELIMMSSFDICDLAGA 225
           EAYR+L+ G  H SVA T+LN+ SSRSH +F+I+++++ D     +  +S   +CDLAG+
Sbjct: 324 EAYRLLKLGVKHQSVAFTKLNNASSRSHSIFTIRILQIEDSEIPRVTRVSELSLCDLAGS 383

Query: 226 ERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQR 285
           ER  +    G+RLREA  IN+SL  L +C NVL+  N  K+ K + +PFR+SKLT  FQ 
Sbjct: 384 ERSMKTQNEGERLREAGNINTSLLTLGKCINVLK--NSEKS-KVQHVPFRESKLTHYFQS 440

Query: 286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             +G    + MI+N++ S +  +ET+ VLK S+ A+
Sbjct: 441 FFTG-KGKICMIINISQSCSAYDETLNVLKFSTTAQ 475

Plus-end-directed motor enzyme that is required for completion of cytokinesis.

Mus musculus (taxid: 10090)

>sp|Q9V877|SUB_DROME Kinesin-like protein subito OS=Drosophila melanogaster GN=sub PE=1 SV=1

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 177/344 (51%), Gaps = 40/344 (11%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           N G  F I+ LT V V S EEA R+LR G+   + A T +N  SSRSHCVF++ ++K + 
Sbjct: 309 NKGHVF-IKGLTSVFVTSSEEALRLLRLGQQRSTYASTSVNANSSRSHCVFTVDILKYNR 367

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
               +   SS+  CDLAG+ER     TSG RL+EA+ IN+SL VL RC +    +   K 
Sbjct: 368 SG--ITTQSSYKFCDLAGSERVNNTGTSGLRLKEAKNINTSLMVLGRCLDA--ASTVQKK 423

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTV 326
               +IP+RDSKLT + Q +L G    + MIV V     Y EE + VL  +S+A++++  
Sbjct: 424 KNADIIPYRDSKLTMLLQAALLG-KEKLAMIVTVTPLDKYYEENLNVLNFASIAKNII-- 480

Query: 327 AKPRHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRL-L 385
                   P  K+ R S             + F + ++ E  DY +   D   E +RL L
Sbjct: 481 -----FKEPVIKQHRVSYCGF---------MEFSKMSTCEGGDYTKELED---ENVRLQL 523

Query: 386 EARLAEFEGFDKKEFEYQIREE--YREVQEDFRKMFEEQQTDWENNVKK--LREQHEED- 440
           E    +++       + Q+ EE   RE+   ++++ +  +  +E+  +K  L  Q E + 
Sbjct: 524 EIEQLKYDHV----LQMQLLEEKLRRELTATYQEIIQNNKKQYEDECEKKLLIAQRESEF 579

Query: 441 -LERQRKFYKTQIETL---MTLVKNQQAEDD-SEDETLNESAIE 479
            L  QR+ Y+ QIE L   +  +KN  ++ D S+D   ++S IE
Sbjct: 580 MLSSQRRRYEEQIEDLKDEIEELKNPASDTDISDDPNESKSPIE 623

Required during female meiosis for bipolar spindle formation in the absence of the centrosomes and chromosome homolog segregation. Also has roles in male meiosis and mitotic divisions of the early embryo.

Drosophila melanogaster (taxid: 7227)

>sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 167/342 (48%), Gaps = 41/342 (11%)

Query: 5   GTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNS 64
           G+  + G++PR L+++FNS+G +  K     R  + SN       DR  + D++ ++ ++
Sbjct: 124 GSPGEGGLLPRCLDMIFNSIGSFQAK-----RYVFKSN-------DR-NSMDIQCEV-DA 169

Query: 65  FDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFS--NIYGPHTTQAELFQ 122
             +        N  +    K  +     DM  ++ + C        ++YG   +  E++ 
Sbjct: 170 LLERQKREAMPNP-KTSSSKRQVDPEFADM-ITVQEFCKAEEVDEDSVYGVFVSYIEIYN 227

Query: 123 NIVHNMLE-------RYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFG 175
           N ++++LE       +    +  LL      +      +   T V V S EEA+ V   G
Sbjct: 228 NYIYDLLEEVPFDPIKPKPPQSKLL----REDKNHNMYVAGCTEVEVKSTEEAFEVFWRG 283

Query: 176 KSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE--------ELIMMSSFDICDLAGAER 227
           +    +A T LN  SSRSH VF+IKLV+    ++        E I +S   + DLAG+ER
Sbjct: 284 QKKRRIANTHLNRESSRSHSVFNIKLVQAPLDADGDNVLQEKEQITISQLSLVDLAGSER 343

Query: 228 QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL 287
             R    G+RLREA  IN SL  L  C +VLREN     +  K++P+RDSKLT +F+   
Sbjct: 344 TNRTRAEGNRLREAGNINQSLMTLRTCMDVLRENQMYGTN--KMVPYRDSKLTHLFKNYF 401

Query: 288 SGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKP 329
            G    V+MIV VN      EE +QV++ + V ++ + VA+P
Sbjct: 402 DG-EGKVRMIVCVNPKAEDYEENLQVMRFAEVTQE-VEVARP 441

Component of the centralspindlin complex that serves as a microtubule-dependent and Rho-mediated signaling required for the myosin contractile ring formation during the cell cycle cytokinesis. Essential for cytokinesis in Rho-mediated signaling. Required for the localization of ECT2 to the central spindle. Plus-end-directed motor enzyme that moves antiparallel microtubules in vitro.

Homo sapiens (taxid: 9606)

>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEEL 211
           ++DL+   V++ ++  R++  G  + SV  T +N  SSRSH +F+I L + D G   E+ 
Sbjct: 178 VKDLSAFVVNNADDMDRIMTLGNKNRSVGATNMNESSSRSHAIFTITLERSDMGLDKEQH 237

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           + +    + DLAG+ERQ +   +G RL+EA  IN SL  L    + L +       K   
Sbjct: 238 VRVGKLHMVDLAGSERQTKTGATGQRLKEATKINLSLSTLGNVISSLVDG------KSTH 291

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH 331
           IP+R+SKLT++ Q SL G + TV M  N+  +    +ET+  L+ ++ A+++   AK   
Sbjct: 292 IPYRNSKLTRLLQDSLGGNAKTV-MCANIGPAEYNYDETISTLRYANRAKNIKNKAKINE 350

Query: 332 LP 333
            P
Sbjct: 351 DP 352

Strongylocentrotus purpuratus (taxid: 7668)

>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 11/179 (6%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF--SIKLVKVDPGSEEL 211
           ++DL+     S +E   V+  G  + SV  T +N  SSRSH +F  +I+  +V    E  
Sbjct: 176 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 235

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           I +   ++ DLAG+ERQ +    G+RL+EA  IN SL  L    + L +       K   
Sbjct: 236 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 289

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330
           IP+RDSKLT++ Q SL G + TV M+ NV  +    EET+  L+ ++ A+++    KPR
Sbjct: 290 IPYRDSKLTRLLQDSLGGNAKTV-MVANVGPASYNVEETLTTLRYANRAKNIKN--KPR 345

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Homo sapiens (taxid: 9606)

>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 11/179 (6%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF--SIKLVKVDPGSEEL 211
           ++DL+     S +E   V+  G  + SV  T +N  SSRSH +F  +I+  +V    E  
Sbjct: 176 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 235

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           I +   ++ DLAG+ERQ +    G+RL+EA  IN SL  L    + L +       K   
Sbjct: 236 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 289

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330
           IP+RDSKLT++ Q SL G + TV M+ NV  +    EET+  L+ ++ A+++    KPR
Sbjct: 290 IPYRDSKLTRLLQDSLGGNAKTV-MVANVGPASYNVEETLTTLRYANRAKNIKN--KPR 345

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	932
328786241	1358	PREDICTED: hypothetical protein LOC55171	0.628	0.431	0.299	2e-57
383850798	1498	PREDICTED: uncharacterized protein LOC10	0.633	0.393	0.306	7e-55
340710761	1506	PREDICTED: hypothetical protein LOC10065	0.572	0.354	0.317	1e-54
350409973	1505	PREDICTED: hypothetical protein LOC10074	0.575	0.356	0.311	1e-52
307197892	1403	Kinesin-like protein KIF20A [Harpegnatho	0.640	0.425	0.281	3e-52
322798360	1228	hypothetical protein SINV_04881 [Solenop	0.620	0.470	0.291	7e-52
242024707	1161	rabkinesin-6, putative [Pediculus humanu	0.680	0.546	0.279	1e-49
345497647	1375	PREDICTED: hypothetical protein LOC10011	0.639	0.433	0.302	3e-49
328725064	957	PREDICTED: kinesin-like protein KIF20A-l	0.672	0.655	0.278	6e-49
332030759	1468	Kinesin-like protein KIF20A [Acromyrmex	0.669	0.425	0.288	4e-48

>gi|328786241|ref|XP_624103.3| PREDICTED: hypothetical protein LOC551711 [Apis mellifera]

 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 205/684 (29%), Positives = 351/684 (51%), Gaps = 98/684 (14%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GT   PGIIPR L  +F+++ P   KS   ++P    +V +L   +R Q  ++K ++L 
Sbjct: 189 QGTTTSPGIIPRCLEFVFSNITP---KSTPFYKPVNHCDVVILDPLERAQELEIKTKLLT 245

Query: 64  --SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
             S D+    +T++ + ++L ++S    P +  +C              Y    + AE++
Sbjct: 246 FASVDKYQYINTYKEMQKLLQEES----PNRPSQC----------IDAHYSIWVSFAEIY 291

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +   L    T + G+ F I+ L  V VHS  EAY+VL  G+ +L V
Sbjct: 292 NEIVYDLLSNECQKKRTPL-KLATDSQGRAF-IKGLKAVCVHSGSEAYQVLMAGQYNLKV 349

Query: 182 APTELNHRSSRSHCVFSIKLVKV----DPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           A T LN RSSRSHC+F+IKL+K     DP S E+   S+F  CDLAG+ER K+    GDR
Sbjct: 350 AATALNARSSRSHCIFTIKLLKYYVENDPTSVEV---STFAFCDLAGSERLKKTLNIGDR 406

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
           L+EA+ IN+SL VL RC   + E    K   + + PFR+SKLT++FQ++LSG    V +I
Sbjct: 407 LKEAQNINTSLLVLGRCLKSIHEGQLSKQKIEHIGPFRESKLTRLFQKALSGKEHIV-LI 465

Query: 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DWR 353
           VN+N  P    ET  VL  S++A+ ++   +  H     + K+RFS +  +++    DW 
Sbjct: 466 VNINPIPNLYIETQNVLNFSAIAKKIVIEKEKVH-----KNKSRFSQIVTQSIKTVTDWD 520

Query: 354 ESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFD---------KKEF---- 400
            +++  +E         +Q + DD      +  +    FE +D         KKE     
Sbjct: 521 ATELESEE---------WQNTVDD------ISTSDYVRFEKYDELMSENERLKKEISVLK 565

Query: 401 ------EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKT 450
                 + QIR+   E+ + +  M ++ + +W+N++K + +Q E+ L+   K    FYK 
Sbjct: 566 SSALTRDLQIRQ---EMADTYTSMMKKLEIEWKNHIKDVEQQQEDVLQWSVKQVEEFYKQ 622

Query: 451 QIETLMTLVKNQQA--EDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKYKSLSE 505
           +++ L    + + +   ++S+D + N   +E ++   K K+ +LK ++ EL+   ++L  
Sbjct: 623 KLDQLSCRKRRRSSLGINNSDDYSRNIEELEIKNSHLKSKVVSLKIDMKELKETNQTLMV 682

Query: 506 EHEDMSGKLKELTREN----RDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYL 561
           E  +   +L  LT+E+    ++L+   ++        +  +EE++  +Q   K E+VK L
Sbjct: 683 EKNNAIFELA-LTKEDLKNIKNLLNAAQQDICSDEDTNYYIEELK--SQLFAKQEQVKKL 739

Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
           K  L+EAKE++   TTE+ +   E+++  EE         +LE  L   +  ++ K    
Sbjct: 740 KVFLNEAKEDYISITTEMREKEYEIKEQKEELFEKQETIDDLEANLTHINMCLSEKIKII 799

Query: 622 EELQEKLDY-------MENKFQEE 638
           ++L+EKLD         ENK QE+
Sbjct: 800 DQLEEKLDNQNKKIVDYENKMQEQ 823

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850798|ref|XP_003700961.1| PREDICTED: uncharacterized protein LOC100880447 [Megachile rotundata]

 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 349/678 (51%), Gaps = 88/678 (12%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GT   PGIIPR L  +F+++ P   KS   ++P    +V  LS  +R Q  ++K ++L 
Sbjct: 183 QGTTTSPGIIPRCLEFVFSNITP---KSIPSYKPVNHCDVVTLSPIERAQELEIKTKLLT 239

Query: 64  --SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
             S D+    + ++ + ++L ++S    P++  +C              Y    + AE++
Sbjct: 240 FASVDKHQYINAYKEMQKLLQEES----PIRPSQC----------IDAHYSVWVSFAEIY 285

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +   L    T + G+ F I+ L  V V+S  EAY+VL  G+ +L V
Sbjct: 286 NEIVYDLLSNECQKKRTAL-KLATDSQGRAF-IKGLKTVCVNSGSEAYQVLMAGQYNLKV 343

Query: 182 APTELNHRSSRSHCVFSIKLVKV----DPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           A T LN RSSRSHC+F+IKL+K     DP S E+   S+F  CDLAG+ER K+    G+R
Sbjct: 344 AATALNARSSRSHCIFTIKLLKYYVENDPNSVEV---STFAFCDLAGSERLKKTLNIGER 400

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
           L+EA+ IN+SL VL RC   + E    K   + + PFR+SKLT++FQ++LSG    + +I
Sbjct: 401 LKEAQNINTSLLVLGRCLKTIHEGQVSKQKLEHIGPFRESKLTRLFQKALSG-KEQIALI 459

Query: 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DWR 353
           VN+N  P    ET  VL  S++A+ ++   K        + K+RFS +  +++    DW 
Sbjct: 460 VNINPIPNLYIETQNVLNFSAIAKKIVIEQKKEQQ---KKNKSRFSQIVGQSIKTVTDWD 516

Query: 354 ESDIVFQERASGEMTDYFQGS----HDDPYETIRLLEARLAEFEGFDKKEF--------- 400
           + D++  +    +  D  +      H + YE +      L E E   KKE          
Sbjct: 517 DIDLMLTKNEDCQNVDEDESRSHYVHTEEYEEL------LCENEKL-KKEIASLKSSALT 569

Query: 401 -EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETL 455
            + QIR+   E+ + +  M +E +T+W+N +K + EQ E+ L+   K    FYK +++ L
Sbjct: 570 RDLQIRQ---EMADTYTAMMKELETEWKNRIKDVEEQQEDALQWSVKQVEDFYKQKLDQL 626

Query: 456 MTLVKNQ----QAEDDSEDETLNESAIE-AQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
               + +      E D +++ +NE  +E ++   KI  LK  L E++   ++L+ E   +
Sbjct: 627 SCRKRKRSIYSDDESDDDEKKINELEVENSRLTSKIVLLKNNLKEIKEINQALTVEKNKV 686

Query: 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRR------VEEMERGAQTENKPEEVKYLKSL 564
           + +L  LT+E  DL +    L+     ++        VEE++  +Q   K E+ K LK  
Sbjct: 687 TFELG-LTKE--DLKSAKNLLDSAQRDVNYDEDTKCLVEELK--SQLFAKQEQTKKLKVF 741

Query: 565 LDEAKEEFKEQTTEIEQ----LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG 620
           L+EAKEE+   TTE+ +    ++ + E+L E++  +     ELE EL   +  +  KT  
Sbjct: 742 LNEAKEEYIAITTEVREKEYIIKEQEEELFEKQETID----ELEGELTDINICLTEKTKT 797

Query: 621 AEELQEKLDYMENKFQEE 638
            E L+E+L+    K +++
Sbjct: 798 IEILEEQLEVQTKKIKDD 815

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710761|ref|XP_003393954.1| PREDICTED: hypothetical protein LOC100650916 [Bombus terrestris]

 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 310/608 (50%), Gaps = 74/608 (12%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GT   PGI+PR L  +F+++ P   KS   ++P    ++ +L   +R Q  ++K ++L 
Sbjct: 186 QGTTTSPGIVPRCLEFVFSNITP---KSIPSYKPMNHCDIVILDPLERAQELEIKTKLLT 242

Query: 64  --SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
             S D+    + ++ + ++L ++S    P++  +C              Y    + AE++
Sbjct: 243 FASVDKYQFINAYKEMQKLLQEES----PIRPSQC----------IGVHYSVWVSFAEIY 288

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +   L    T   G+TF I+ L  V V+S  EAY+VL  G+ +L V
Sbjct: 289 NEIVYDLLSNECQKKRTPL-KLATDTHGRTF-IKGLKTVCVNSGSEAYQVLMAGQYNLKV 346

Query: 182 APTELNHRSSRSHCVFSIKLVKV----DPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           A T LN RSSRSHC+F+IKL+K     DP S E+   S+F  CDLAG+ER K+    GDR
Sbjct: 347 AATALNARSSRSHCIFTIKLLKYYVENDPSSVEV---STFAFCDLAGSERLKKTLNIGDR 403

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
           L+EA+ IN+SL VL RC   + E    K   + + PFR+SKLT++FQ++LSG    + +I
Sbjct: 404 LKEAQNINTSLLVLGRCLKTIHEGQLSKQKIEHIGPFRESKLTRLFQKALSGKEHII-LI 462

Query: 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DWR 353
           VN+N  P    ET  VL  S++A+ ++ + K +      + K+RFS +  +++    DW 
Sbjct: 463 VNINPIPNLYIETQNVLNFSAIAKKIV-IEKEK---ACKKTKSRFSRIVTQSIKTETDWD 518

Query: 354 ESDIVFQERAS--GEMTDYFQGSHDDPYETI---RLLEARLAEFEGFDKKEFEYQIREEY 408
            +++  ++  +   + +DY Q   +D  E I   + L+  LA  +       + QIREE 
Sbjct: 519 ATELESEDWQNIVDDNSDYAQS--EDYNELISENKRLKKELATLKS-SALTRDLQIREEM 575

Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETL--------M 456
            +      K  E   T+W+N +K + EQ E+ L    K    FYK ++E L         
Sbjct: 576 ADTYTSIMKNLE---TEWKNRMKDVEEQQEDVLHWSVKQVEDFYKEKLEQLNSRKRRRSS 632

Query: 457 TLVKNQQAEDDSEDETLNESAIEAQH-KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
             + N   +DDS++  + E  IE  H   KI  LK  + EL+   ++L  E   ++    
Sbjct: 633 VSINNLDLDDDSKN--IEELEIENSHLTSKIILLKNSVKELKEANQNLMAEKTKITF--- 687

Query: 516 ELTRENRDLVTKNKELEGKVAQLS------RRVEEMERGAQTENKPEEVKYLKSLLDEAK 569
           EL+    DL   N  L      +       R VEE+   +Q   + E+VK LK  L+EAK
Sbjct: 688 ELSLSKEDLKNANNLLNAVKKDVCSDEDTIRYVEEL--NSQLSAREEQVKKLKIFLNEAK 745

Query: 570 EEFKEQTT 577
           +E+ + TT
Sbjct: 746 QEYIDITT 753

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409973|ref|XP_003488905.1| PREDICTED: hypothetical protein LOC100749477 [Bombus impatiens]

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 189/606 (31%), Positives = 311/606 (51%), Gaps = 70/606 (11%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GT   PGI+PR L  +F+++ P   KS   ++P    ++ +L   +R Q  ++K ++L 
Sbjct: 186 QGTTTSPGIVPRCLEFVFSNITP---KSTPSYKPMNHCDIVILDPLERAQELEIKTKLLT 242

Query: 64  --SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
             S D+    + ++++ ++L ++S    P++  +C              Y    + AE++
Sbjct: 243 FASVDKYQFINAYKDMQKLLQEES----PIRPSQC----------IGAHYSVWVSFAEIY 288

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +   L    T   G+TF I+ L  V V+S  EAY+VL  G+ +L V
Sbjct: 289 NEIVYDLLSNECQKKRTPL-KLATDAHGRTF-IKGLKTVCVNSGSEAYQVLMAGQYNLKV 346

Query: 182 APTELNHRSSRSHCVFSIKLVKV----DPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           A T LN RSSRSHC+F+IKL+K     DP S E+   S+F  CDLAG+ER K+    GDR
Sbjct: 347 AATALNARSSRSHCIFTIKLLKYYIENDPSSVEV---STFAFCDLAGSERLKKTLNIGDR 403

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
           L+EA+ IN+SL VL RC   + +    K   + + PFR+SKLT++FQ++LSG    + +I
Sbjct: 404 LKEAQNINTSLLVLGRCLKTIHDGQLSKQKIEHIGPFRESKLTRLFQKALSGKEHII-LI 462

Query: 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DWR 353
           VN+N  P    ET  VL  S++A+ ++ + K +      + K+RFS +  +++    DW 
Sbjct: 463 VNINPIPNLYIETQNVLNFSAIAKKIV-IEKEK---VCKKTKSRFSRIVTQSIKTETDWD 518

Query: 354 ESDIVFQERAS--GEMTDYFQGSHDDPYETI---RLLEARLAEFEGFDKKEFEYQIREEY 408
            +++  ++  +   + +DY Q   +D  E I   + L+  LA  +       + QIREE 
Sbjct: 519 ATELESEDWQNIVDDNSDYAQS--EDYNELISENKRLKKELATLKS-SALTRDLQIREEM 575

Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETLMTLVKNQQA 464
            +      K  E   T+W+N +K + EQ E+ L    K    FYK ++E L +  + + +
Sbjct: 576 ADTYTSIMKNLE---TEWKNRMKDVEEQQEDVLHWSVKQVEDFYKEKLEQLNSRKRRRSS 632

Query: 465 ED------DSEDETLNESAIEAQH-KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL 517
                   D + + + E  IE  H   KI  LK  + EL+   ++L  E   ++    EL
Sbjct: 633 VSINNLDLDGDPKNIQELEIENSHLTSKIILLKNSMKELKEANQNLIAEKTKITF---EL 689

Query: 518 TRENRDLVTKNKELEG---KVA---QLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEE 571
           +    DL   N  L      V     ++  VEE+   +Q   + E+VK LK  L+EAK+E
Sbjct: 690 SLSKEDLKNANNLLNAVRKDVCLDEDVTCYVEEL--NSQLSAREEQVKKLKIFLNEAKQE 747

Query: 572 FKEQTT 577
           + + TT
Sbjct: 748 YIDITT 753

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197892|gb|EFN78991.1| Kinesin-like protein KIF20A [Harpegnathos saltator]

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 187/664 (28%), Positives = 329/664 (49%), Gaps = 67/664 (10%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQIL- 62
           +GT   PG+IPR L  +F+++    + S   ++P +  NV  L+  +R Q  + K ++L 
Sbjct: 72  QGTTTSPGLIPRALEFVFSNITTRPNPS---YKPLHYCNVISLNALERAQELEAKTKLLT 128

Query: 63  -NSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
            +S D+    + ++ + ++L ++S+      D                 Y    + AE++
Sbjct: 129 FSSVDKHQYTNAYKQMQKLLQEESVRPSQCHDAH---------------YSIWVSFAEIY 173

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +   L   GT ++G+ F I+ L  + V+S  EAY+VL  G+ +L +
Sbjct: 174 NEIVYDLLSNECQKKRVPL-KLGTDSNGRAF-IKGLKTIYVNSAAEAYQVLMAGQYNLKI 231

Query: 182 APTELNHRSSRSHCVFSIKLVKVD-PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLRE 240
           A T LN +SSRSHC+F+I L+K     S + + +S+F  CDLAG+ER K+    GDRL+E
Sbjct: 232 AATALNAKSSRSHCIFTISLLKYHMENSPDRVEVSTFSFCDLAGSERLKKTLNIGDRLKE 291

Query: 241 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300
           A+ IN+SL VL RC   + E   ++A    + PFR+SKLT++FQR+LSG    + +IVNV
Sbjct: 292 AQNINTSLLVLGRCLKSIHEGQLIRAKTDAIGPFRESKLTRLFQRALSG-KEHLALIVNV 350

Query: 301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DWR--- 353
           N  P    ET  VL  +++A+ ++   K +      + ++RFS +  +++    DW    
Sbjct: 351 NPLPNLYVETQNVLNFAAIAKKIIIEEKKQ---VQAKLRSRFSRIVTQSMEAATDWDATE 407

Query: 354 -ESDIVFQERASGE-MTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREV 411
            E+D+ +Q+  + E +++Y +    + Y  +     RL +     K     +  +  +E+
Sbjct: 408 LETDVEWQQADTMENISEYVRS---EEYMDLMSENERLKKEIAILKDSALSRDIQSRQEM 464

Query: 412 QEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETLMTLVKNQQAEDD 467
            E +  M  E +  W+  +     QHE++LE   K    FY+   E L  L++ ++   D
Sbjct: 465 SEKYIVMMNELEVHWKQRINDAETQHEDNLEWTVKQVQEFYE---EKLNQLLRTKRRRSD 521

Query: 468 SEDE----------TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL 517
             DE          TL+ S    Q + KI+ +K  L+EL+   ++L  E    +    EL
Sbjct: 522 CADESEQNSDFLNVTLDLSEENTQLRTKIETMKTRLTELKTANETLIMEKNKANF---EL 578

Query: 518 TRENRDLVTKNKELEGKVAQLSRR------VEEMERGAQTENKPEEVKYLKSLLDEAKEE 571
              N DL      L+     +SR        E+M   +Q   K E++  LK  L+EAKE+
Sbjct: 579 GLSNEDLKVVKNLLKAAQEDISRDQDGKFFAEKM--TSQLLAKDEQIMKLKEFLNEAKED 636

Query: 572 FKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYM 631
           +   T+++++    +++  +       +  ++E  LEQ +  +  KT   E ++EK +  
Sbjct: 637 YITVTSDLKKKEICIDEQKKIIIENEEKIEDVESHLEQVNMCLMEKTRMVELIEEKFEQQ 696

Query: 632 ENKF 635
             K 
Sbjct: 697 SEKL 700

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798360|gb|EFZ20088.1| hypothetical protein SINV_04881 [Solenopsis invicta]

 Score =  212 bits (540), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 196/672 (29%), Positives = 347/672 (51%), Gaps = 94/672 (13%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
           +GT   PG+IPR L  +FN++     + +  ++P + ++V  L+  +R Q  + K ++L 
Sbjct: 12  QGTTTSPGLIPRALEFVFNNITT---RPNPFYKPLHYNDVVNLNALERAQELEAKSKLLT 68

Query: 64  --SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
             S D+    +T++ + ++L ++SI  +P +         C    +   Y    + AE++
Sbjct: 69  FISVDKHQYMNTYKQMQKLLQEESI--RPSQ---------C----YDAHYSVWISFAEIY 113

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
             IV+++L      +  +    G  ++G+ F I+ L  + V+S  EAY++L  G+ +L V
Sbjct: 114 NEIVYDLLSSECQKK-RIPLKLGADSNGRAF-IKGLKTICVNSAAEAYQILMAGQYNLKV 171

Query: 182 APTELNHRSSRSHCVFSIKLVKV-DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLRE 240
           A T LN +SSRSHC+F+I L+K       + + +S+F  CDLAG+ER K+    GDRL+E
Sbjct: 172 AATALNAKSSRSHCIFTIILLKYYAENVPDTVELSTFSFCDLAGSERLKKTLNIGDRLKE 231

Query: 241 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300
           A+ IN+SL VL RC   + E    +     + PFR+SKLT++FQR+LSG    + +IVNV
Sbjct: 232 AQNINTSLLVLGRCLKSIHEGQLTRTKTDTVGPFRESKLTRLFQRALSG-KEHLALIVNV 290

Query: 301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL---------- 350
           N  P    ET  VL  +++A+ ++     R      + K+RFS +  +++          
Sbjct: 291 NPLPNLYVETQNVLNFAAIAKKIVI---ERKKQIQKKLKSRFSQIVTQSIQTVTDWDTEL 347

Query: 351 ---DWRESDIVFQERASGEMT--DYFQGSHDDP--YETIRLLE--ARLAEFEGFDKKEFE 401
              DW+ ++ V +E  S  +T  +Y   ++++    + I LL+  A + +F         
Sbjct: 348 ESVDWQRTNSV-EENESDYITSEEYMDIANENEKLKKEIALLKNSALIRDF--------- 397

Query: 402 YQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETLMT 457
            Q R+   E+ E +  M  E + DW+  +  +  QHE+ LE   K    +YK Q+  L  
Sbjct: 398 -QTRQ---EMAEKYIAMINELEVDWKQRINDVETQHEDALEWTVKQVEEYYKKQLNQLNK 453

Query: 458 LVK--NQQAEDDSEDETLNESAIE-----AQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
             +  ++  + D ED+ LN +  E      Q + K ++LK+ L+E++   ++L  E    
Sbjct: 454 KRRRYSECTDSDEEDDNLNVTVKELIKENTQLREKNESLKKTLTEVKVTNETLIVEKNKA 513

Query: 511 S---GKLKELTRENRDLV-TKNKEL----EGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
           S   G  KE  +  R L+ T  K++    +GK+      ++E+   +Q   K E++K LK
Sbjct: 514 SFELGLSKEDLKVARGLLETAQKDICSTQDGKIY-----IKEL--TSQLLVKDEQIKTLK 566

Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE----LEYELEQRDYLIAVKT 618
            +L+EAKEE+   T+++++   E+    +E+  + V + E    LE +LE  +  +  KT
Sbjct: 567 EILNEAKEEYITITSDLKKRELEI----DEQAKVIVENEEKIEDLELQLEDVNICLMEKT 622

Query: 619 DGAEELQEKLDY 630
              E L+EKL++
Sbjct: 623 RMVELLEEKLEH 634

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024707|ref|XP_002432768.1| rabkinesin-6, putative [Pediculus humanus corporis] gi|212518253|gb|EEB20030.1| rabkinesin-6, putative [Pediculus humanus corporis]

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 198/709 (27%), Positives = 355/709 (50%), Gaps = 75/709 (10%)

Query: 4   EGTIEQPGIIPRTLNILF----NSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKK 59
           +G ++ PG+IPR L+ +F    N++ P        + P +  N  ++  E++++     K
Sbjct: 149 QGNVDHPGVIPRALDFVFKGLQNNIIPLCK-----YYP-HQYNELIVPSEEQLKKNTCYK 202

Query: 60  QILNSFD----QSYAGSTFENVLEVLDQKSI--MFKPM--KDMKCSITDT-CNLYRFSNI 110
               S D    Q Y  ++   +           M++ M  K+M+  +TDT C+     + 
Sbjct: 203 NFFLSLDLNKCQKYPEASHVTMQTTTSSSGFSDMYENMTFKEMQSRLTDTECSEIDLGSY 262

Query: 111 -YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAY 169
            Y    +  E++   V+++LE   +       SF     G TF I++L YVNV S  EA+
Sbjct: 263 KYAVWISMIEIYNEQVYDLLEVPNDRVGRTKLSFRDDEYGNTF-IKNLRYVNVSSGHEAF 321

Query: 170 RVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK 229
           ++L+FG+++L  APT LN+ SSRSHC+F+I L K         ++S F  CDLAG ER K
Sbjct: 322 QILQFGRNNLHFAPTALNNSSSRSHCIFTITLAKFLNHDSSYAVISRFSFCDLAGMERAK 381

Query: 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSG 289
           +     DRL E++ IN+SL +L +C   ++EN   K  +KKLIP+R+SKLT++F+ +++G
Sbjct: 382 KTLNMKDRLVESKAINTSLSILVKCLTTIKENQNNK--EKKLIPYRESKLTKLFRDAVTG 439

Query: 290 LSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL---TVAKPRHLPPPPRKKTRFSIMA 346
                 +IVNV   P   +ET+ VLK S++A+ ++     AKP+ +   P KK+RFS   
Sbjct: 440 -KEQFSLIVNVTTEPNLFDETLNVLKFSAIAQKIVPQNIFAKPKVM--RPLKKSRFSRFV 496

Query: 347 ARN------LDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEF 400
            ++      +DW    I           +      ++    I  L+  L++ +  ++K  
Sbjct: 497 TQSSYMGNTIDWDAESI----EKFSVKEESVSSEVEELRNVIDKLKEELSKEKSLNEK-I 551

Query: 401 EYQIREEY-REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLV 459
           E  IR+E   +  E  +K  E      E+  ++L E +EE  +R  K+Y+     ++   
Sbjct: 552 ECDIRKELTSQFSEILKKQRENNLIRLESEKERLEEMYEEKEKRIIKYYE-----VLRKC 606

Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
           K ++ +D+   E  ++     + K +I++L  ++S L  + +S +++H            
Sbjct: 607 KRKKMDDEDVTEYEDQEKKLKEAKKEIESLNNKISGLTEQMQSFTQQH------------ 654

Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE---EVKYLKSLLDEAKEEFKEQT 576
              +++ +N  L+  + +  R +EEM+R  + ++  E   EV+ LK  L+EAK++  +  
Sbjct: 655 --NNVLCENSALKFTIVEKDRVIEEMKRTMEAKSAGENEFEVE-LKKQLEEAKKKMADYK 711

Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAELE-YELEQRDYLIAVKTDGAEELQEKLDYMENKF 635
           T +++  S+  +L E  + L   +  LE Y  EQRD    V  D + E+ E     +   
Sbjct: 712 TLLDEAASDYNELEENNKYLRNENDVLEQYLTEQRD----VVADHSREIAE----FQKIL 763

Query: 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
            +++++ E+L    E L+S+LK   E+   ++  +  D Q   KE++NL
Sbjct: 764 SQKTIIIEKLEETNEKLMSELKLAGENKNEKNLSNVIDSQT--KELENL 810

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497647|ref|XP_001600225.2| PREDICTED: hypothetical protein LOC100115522 [Nasonia vitripennis]

 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 329/668 (49%), Gaps = 72/668 (10%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQIL- 62
           +GT E PG+IPR +  +F+++ P    S   ++P    +V  L+  DRVQ  ++K ++L 
Sbjct: 199 QGTPESPGLIPRGIEFVFSNITPRAMPS---YKPVNQCDVIHLNHHDRVQETELKLKLLT 255

Query: 63  -NSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF 121
            N  D+    +T++ +  +L  +S    P++            + ++  Y    + AE++
Sbjct: 256 FNPADKIMYVNTYKQMQRLLHAES----PIRPS----------HNYNAQYSVWVSFAEIY 301

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSV 181
              ++++L      +   L    +   G+ F I+ L  V V++  EAY+VL  G+ +L V
Sbjct: 302 NETIYDLLWTDCQKKRPAL-KLASDGKGRAF-IKGLKNVCVNTGAEAYQVLMAGQYNLKV 359

Query: 182 APTELNHRSSRSHCVFSIKLVKV----DPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           A T LN RSSRSHC+F+IKL+K     DP S E+   S+F  CDLAG+ER K+    G+R
Sbjct: 360 AATALNSRSSRSHCIFTIKLLKYRTENDPYSVEV---STFAFCDLAGSERLKKTLNVGER 416

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKK--KLIPFRDSKLTQIFQRSLSGLSSTVK 295
           L+EA+ IN+SL VL RC   + E+    A+KK   + PFR+SKLT++FQR+LSG    + 
Sbjct: 417 LKEAQNINTSLLVLGRCLKTIYESQ-CSANKKIESIGPFRESKLTRLFQRALSG-KEQIS 474

Query: 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAAR----NLD 351
           MIVNVN  P    ET  VL  S++A+ +  V +P       R  +RFS +  +    +LD
Sbjct: 475 MIVNVNPVPNLYVETQNVLNFSAIAKKI--VIEPIETIKRRRSHSRFSRLCTQSMKTDLD 532

Query: 352 WRESDIVFQERASGEMTDYFQ---GSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEY 408
           W  +++     A    +   Q    +++D      LL+  + E +       + Q R+E 
Sbjct: 533 WENTELEDMTEACMYYSTIIQIKYKAYEDLLTENELLKKEIKELKA-SALTRDMQTRQEM 591

Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEE----DLERQRKFYKTQIETLMTLVKNQQA 464
            ++  +  K  E    DW+N +  L EQ E+     +ER   FYK ++  L    +++ +
Sbjct: 592 TDMYSEIMKKLE---ADWKNRLIDLEEQQEDLRELAVERIELFYKEKLSQLNVRKRSRPS 648

Query: 465 ED-DSED---------ETLNESAIEAQHKLK--IQNLKQELSELEAKYKSLSEEHEDMSG 512
            D D ED         E  N   I     +K  I+ LKQ   E+E     +S E   ++ 
Sbjct: 649 MDGDEEDDDQKLLQDLEVENTRLIAKMETMKKSIRALKQMKEEVETTKTKISFE---LAV 705

Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
             +E  R N   +   K +       +  +EE+    +   K + +K +K+ L+EAKEE+
Sbjct: 706 AKEEAKRANEMFLAAQKSINSGDDVSATYIEELNEIIK--KKDDRIKTMKTFLNEAKEEY 763

Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSA---ELEYELEQRDYLIAVKTDGAEELQEKLD 629
              T + ++L    E+L E   LL   S    +LE +L Q +   A +    E L+E+LD
Sbjct: 764 ISITDQAQKLE---EQLKERDELLVENSEQIRDLEEQLSQANAYSAEQNKVIENLEEELD 820

Query: 630 YMENKFQE 637
            +  K  E
Sbjct: 821 QLNKKLIE 828

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725064|ref|XP_001944759.2| PREDICTED: kinesin-like protein KIF20A-like [Acyrthosiphon pisum]

 Score =  202 bits (515), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 205/736 (27%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 5   GTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNS 64
           G I  PG+IPRTL ++FNSL   L  S   ++P       +L ++      D++  ILN+
Sbjct: 146 GNINDPGMIPRTLLLVFNSLKEKL-MSKCKYKPDKVIAAHILDEKLMESEEDIRNNILNN 204

Query: 65  FDQSYAGSTFENV------------LEVLDQKSI--MFKPMKDMKCSITDTCNLYRFSNI 110
           +        F++             ++ L   SI  MF  +K+   +  D  N+      
Sbjct: 205 WSNEKTQDDFKSCSSQVDECQTIHGIDQLTNHSIVKMFDYLKNDGIASLDHGNVS----- 259

Query: 111 YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYR 170
           Y    + +E++   ++++L  YL  +        + +  K   +++LT+V V S EEAY+
Sbjct: 260 YTVWVSYSEIYNESIYDLLITYLANQKRAPLKL-SLDQNKNVYVKNLTHVFVQSAEEAYK 318

Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV-DPGSEELIMMSSFDICDLAGAERQK 229
           V+ FG+++L +A   LN  SSRSHC+F++KL++V +  + +  ++SS   CDLAG+ER K
Sbjct: 319 VMSFGRNNLRIASNNLNKSSSRSHCIFTLKLMRVENIENPKTAVISSISFCDLAGSERLK 378

Query: 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSG 289
           +    GDRL E++ IN+SL VL +CF+VLREN   K  +  L+P+R+SKLTQ+FQ +L+G
Sbjct: 379 KTMNIGDRLTESKNINTSLLVLNKCFSVLRENQ--KKGENHLVPYRESKLTQMFQTALTG 436

Query: 290 LSST-VKMIVNVNASPAYAEETVQVLKISSVARDLL-TVAKPRHLPPPPRKKTRFSIMAA 347
            + T + M VNV+ SP   EET QVL +S++ R +  T +KP   P P      F++ AA
Sbjct: 437 NNRTGISMAVNVDMSPNLLEETKQVLFMSAIVRAITKTKSKPISKPRP-----SFAVWAA 491

Query: 348 RNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREE 407
            N            R S + T + Q    +   +I    ++  +      +EFE + +E+
Sbjct: 492 NN------------RKSLKQTTFKQSPIIEDEHSIN--NSKCEQKSLISNEEFEARFKEK 537

Query: 408 ----YREVQEDFRKMFEEQQT----DWENNVKKLREQHEEDLERQRKFYKTQI---ETLM 456
                +E+ + F  +     T      E  +K   E +E  ++R + +Y  +I   +  +
Sbjct: 538 EAILRKELLQQFHTILNNNNTFHTKQKETMIKNKTEMYENKIKRLKAYYCEEIRERDEKL 597

Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
            L  N    +  E+   N+S +E  ++ +I  L+ +  EL A+   L   H        +
Sbjct: 598 ALHSNPNLTNTYENNK-NKSEME-NYEFRIGELEIQKEELLAEINVLKNVH--------D 647

Query: 517 LTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQT 576
           L +E+ D+  KN+E+E                             K +L+EA  E+++  
Sbjct: 648 LRQEDIDV--KNREIEN---------------------------YKVMLEEANTEYEQME 678

Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA----VKTDGAEELQEK--LDY 630
            ++ ++ ++ E L +E     +    L   LE +D  I     ++ +   EL E+  L Y
Sbjct: 679 ADLNEMNNKFEVLYQEMEDKNLEIERLTGSLEAKDNYITEMELLQEERTTELAEQKILKY 738

Query: 631 MENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD 690
           M+ K   E++V        EN IS+LK   +    E +  A   Q L++ +K       D
Sbjct: 739 MDEKL--ETIV------GLENTISKLKTKNKKYNEEKSNMAKQYQTLKQMLKATEQSNTD 790

Query: 691 KDKTIGDLKAKIHKYE 706
           K+  I  L   + K E
Sbjct: 791 KESKIAKLLEGVQKLE 806

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030759|gb|EGI70435.1| Kinesin-like protein KIF20A [Acromyrmex echinatior]

 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 205/711 (28%), Positives = 343/711 (48%), Gaps = 87/711 (12%)

Query: 4   EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQIL- 62
           +GT   PG+IPR L  +FN++     + +  ++P + S+V  L+  +R Q  + K ++L 
Sbjct: 179 QGTTTSPGLIPRALEFVFNNITT---RPNPFYKPLHYSDVINLNALERAQELEAKTKLLT 235

Query: 63  -NSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH----TTQ 117
            +S ++    +T++ + ++L ++SI                   R S  Y  H     + 
Sbjct: 236 FSSMEKHQYMNTYKQMQKLLQEESI-------------------RPSQCYDAHYSVWVSF 276

Query: 118 AELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKS 177
           AE++  IV+++L      +  +    G  ++G+ F I+ L  V V+S  EAY++L  G+ 
Sbjct: 277 AEIYNEIVYDLLSSECQKK-RMPLKLGADSNGRAF-IKGLKTVYVNSAAEAYQILMAGQY 334

Query: 178 HLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-EELIMMSSFDICDLAGAERQKRAHTSGD 236
           +L VA T LN +SSRSHC+F+I L+K    +  + + +S+F  CDLAG+ER K+    GD
Sbjct: 335 NLKVAATALNAKSSRSHCIFTIILLKYYAENLPDTVEVSTFSFCDLAGSERLKKTLNIGD 394

Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RL+EA+ IN+SL VL RC   + E    +     + PFR+SKLT++FQR+LSG    + +
Sbjct: 395 RLKEAQNINTSLLVLGRCLKSIHEGQLTRTKTDTVGPFRESKLTRLFQRALSG-KEHLAL 453

Query: 297 IVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNL----DW 352
           IVNVN  P    ET  VL  +++A+ ++   K R      + K+RFS +  +++    DW
Sbjct: 454 IVNVNPLPNLYVETQNVLNFAAIAKRIVIERKKR---IQKKSKSRFSQIVTQSIQTVTDW 510

Query: 353 RESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEF----------EY 402
             +++     A  + T+  +    + Y T         E E   KKE           ++
Sbjct: 511 DSTEL---GTADWQPTNSVKDDDSEEYITSEEYMDLANENEKL-KKEIALLKNSALIQDF 566

Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRK----FYKTQIETL--- 455
           Q R+   E+ E +  M  E + DW+  +  +  QHE+ LE   K    FYK ++  L   
Sbjct: 567 QSRQ---EMAEKYIMMINELEIDWKQRINDVETQHEDALEWTVKQVEEFYKGKLNQLHKK 623

Query: 456 -------MTLVKNQQAEDDSEDETLNESAIEAQH-KLKIQNLKQELSELEAKYKSLSEEH 507
                           + D  + T+ E   E  H + K   LK+ L+EL+   ++L  E 
Sbjct: 624 KRRRSECTDDRNEDDDDADDINITIKELIKENTHLREKNDTLKKTLTELKVTNETLIVEK 683

Query: 508 EDMSGKLKELTRENRDLVTKNKELEGKVAQLSR----RVEEMERGAQTENKPEEVKYLKS 563
              S +L  L++E  DL      LE     +      +V   E  +Q   K E++K LK 
Sbjct: 684 NKTSFELG-LSKE--DLKIAKNLLEAAQEDICSTQDGKVYIKEVTSQLLIKDEQIKKLKE 740

Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE----LEYELEQRDYLIAVKTD 619
           +L+EAKEE+   T ++    ++ E   +E+  + + + E    LE  LE  +  +  KT 
Sbjct: 741 ILNEAKEEYIAITYDL----NKKELCIDEQAKVIIENEEKIEDLELHLEDVNVCLTEKTR 796

Query: 620 GAEELQEKLDYM-ENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ 669
             E L+E+L++  ENK  +      +L  EK  LI   +  L S  +  N+
Sbjct: 797 IVELLEERLEHQNENKILQLQEEINKLKDEKLALIESYEEKLNSKTSIKNE 847

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	932
UNIPROTKB|F1N8T6	617	LOC430761 "Uncharacterized pro	0.389	0.588	0.306	7e-53
UNIPROTKB|F1N8T5	786	LOC430761 "Uncharacterized pro	0.475	0.563	0.296	5.1e-45
UNIPROTKB|F1SCX7	1828	KIF20B "Uncharacterized protei	0.854	0.435	0.242	4.8e-44
UNIPROTKB|F1NLI8	881	KIF20A "Uncharacterized protei	0.471	0.498	0.286	6.6e-43
UNIPROTKB|F1RH90	890	KIF20A "Uncharacterized protei	0.449	0.470	0.266	1e-42
UNIPROTKB|B4DL79	872	KIF20A "Kinesin-like protein K	0.409	0.438	0.276	5.8e-41
UNIPROTKB|Q29RT6	888	KIF20A "Kinesin-like protein K	0.436	0.458	0.278	6.7e-41
UNIPROTKB|O95235	890	KIF20A "Kinesin-like protein K	0.409	0.429	0.276	1.1e-40
UNIPROTKB|G3MX17	1712	G3MX17 "Uncharacterized protei	0.871	0.474	0.244	3.7e-40
UNIPROTKB|E2QUT0	1819	KIF20B "Uncharacterized protei	0.855	0.438	0.234	3.6e-39

UNIPROTKB|F1N8T6 LOC430761 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 449 (163.1 bits), Expect = 7.0e-53, Sum P(2) = 7.0e-53
 Identities = 117/382 (30%), Positives = 196/382 (51%)

Query:   119 ELFQNIVHNMLE--RYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGK 176
             E++   V+++L     L  +   +        G ++ I+DL ++N+ S EE  ++L+ G 
Sbjct:   250 EIYNEYVYDLLSVLSTLKNQRRRVLRICEDQGGNSY-IKDLKWINIQSTEEGCKILKIGN 308

Query:   177 SHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELIMMSSFDICDLAGAERQKRAHTSG 235
              + S A T +N +SSRSH +FSI+L +  D     ++ +S    CDLAG+ER  +    G
Sbjct:   309 KNRSFACTRMNEQSSRSHSIFSIRLLILTDEHQPHVLGVSELTFCDLAGSERCNKTQAFG 368

Query:   236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
             DRL+EA  IN+SLH+L +C   L++N   K  K   IPFR+SKLT++FQ    G      
Sbjct:   369 DRLKEAGNINNSLHILGKCIAALKQNQNPKM-KPSYIPFRESKLTRLFQPFFCGKGKAC- 426

Query:   296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAXXXXXXXXXXXXXXFSIMAARNLDWRES 355
             MIVN+N   +  +ET+ V+K S++A+ +                  F +  + + D+ +S
Sbjct:   427 MIVNINQHASTYDETLHVMKFSAIAKQVRAHLISLVIQTVLPKSLGFDVNTSVD-DFPDS 485

Query:   356 DIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDF 415
             +  F E    E  D    SH+D  +T   L+ +L   E   K   E  IR E  E    F
Sbjct:   486 NETFAE----EEVDITILSHEDLLKTAENLKEKLVA-ERQSKLLLEVNIRREMAEAM--F 538

Query:   416 RKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNE 475
             R++ E ++  W N ++ +++ +EE LE + + YK  I+    +   +Q ++  + E LNE
Sbjct:   539 RQLLETEEA-WSNRLEDMKDSYEEKLESKFELYKEAIKKHAYMCAMEQKQE--KVEKLNE 595

Query:   476 SAIEAQHKLKIQNLKQELSELE 497
             + +EA    +   + +E S L+
Sbjct:   596 TVLEANEGYR--KMAEENSRLK 615

GO:0000910 "cytokinesis" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1N8T5 LOC430761 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 473 (171.6 bits), Expect = 5.1e-45, Sum P(2) = 5.1e-45
 Identities = 144/486 (29%), Positives = 243/486 (50%)

Query:     4 EGTIEQPGIIPRTLNILFNSL-G-PYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQI 61
             +GT +  GI+PR+L+++FN + G  YL  +   F+P  +++V  L +    Q   +K  +
Sbjct:   118 QGTSKDFGILPRSLDMIFNYIRGRQYLKMN---FKPYLSNDVKKLEEAQVKQEEAIKTTL 174

Query:    62 LNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMK-CSITDTCNL--YRFSNIYGPHTTQA 118
             L S  +  +  TF  +L++     +    + ++  C      N+  YR +NI+    TQA
Sbjct:   175 LASLKEDLS-KTF--LLQMHSHSHLSSYSLLNISFCHSLSVGNIDAYR-TNIH--QRTQA 228

Query:   119 -------ELFQNIVHNMLE--RYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAY 169
                    E++   V+++L     L  +   +        G ++ I+DL ++N+ S EE  
Sbjct:   229 SVWVSFCEIYNEYVYDLLSVLSTLKNQRRRVLRICEDQGGNSY-IKDLKWINIQSTEEGC 287

Query:   170 RVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELIMMSSFDICDLAGAERQ 228
             ++L+ G  + S A T +N +SSRSH +FSI+L +  D     ++ +S    CDLAG+ER 
Sbjct:   288 KILKIGNKNRSFACTRMNEQSSRSHSIFSIRLLILTDEHQPHVLGVSELTFCDLAGSERC 347

Query:   229 KRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLS 288
              +    GDRL+EA  IN+SLH+L +C   L++N   K  K   IPFR+SKLT++FQ    
Sbjct:   348 NKTQAFGDRLKEAGNINNSLHILGKCIAALKQNQNPKRMKPSYIPFRESKLTRLFQPFFC 407

Query:   289 GLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL-TVAXXXXXXX-------XXXXXX 340
             G      MIVN+N   +  +ET+ V+K S++A+ ++ TV                     
Sbjct:   408 GKGKAC-MIVNINQHASTYDETLHVMKFSAIAKQVIQTVLPKSLGDFPPKLVGGDGKPIV 466

Query:   341 XFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEF 400
              F +  + + D+ +S+  F E    E  D    SH+D  +T   L+ +L   E   K   
Sbjct:   467 RFDVNTSVD-DFPDSNETFAE----EEVDITILSHEDLLKTAENLKEKLVA-ERQSKLLL 520

Query:   401 EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK 460
             E  IR E  E    FR++ E ++  W N ++ +++ +EE LE + + YK  I+    +  
Sbjct:   521 EVNIRREMAEAM--FRQLLETEEA-WSNRLEDMKDSYEEKLESKFELYKEAIKKHAYMCA 577

Query:   461 NQQAED 466
              +Q ED
Sbjct:   578 MEQIED 583

GO:0000910 "cytokinesis" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1SCX7 KIF20B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 501 (181.4 bits), Expect = 4.8e-44, P = 4.8e-44
 Identities = 210/866 (24%), Positives = 406/866 (46%)

Query:     4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
             +GT E  GI+PRTLN+LF+SL   L  + +  +P  +     LS E   +    K  +L 
Sbjct:   163 QGTEENIGILPRTLNVLFDSLQERL-YTKMNLKPHRSREYLRLSPEQEKEEVTSKSALLR 221

Query:    64 SFDQ------SYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQ 117
                +      SY  + + N+   L+      + MKD + +  +  N  +FS ++    + 
Sbjct:   222 QIKEVVVHNDSY-DTLYGNLTNSLNVPEFE-ESMKDCEHASLNMDNNIKFS-VW---VSF 275

Query:   118 AELFQNIVHNMLERYLNG-EDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGK 176
              E++   ++++     +  +   +        G +F I+DL ++ V   +EAYR+L+ G 
Sbjct:   276 FEIYNECIYDLFVPISSKFQKRKMLRLSQDVKGYSF-IKDLQWIQVSDSKEAYRLLKLGI 334

Query:   177 SHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM-MSSFDICDLAGAERQKRAHTSG 235
              H SVA T+LN+ SSRSH +F+I++++++      +M +S   +CDLAG+ER  +    G
Sbjct:   335 KHQSVAFTKLNNASSRSHSIFTIRILQIEDSEMPRVMRVSELSLCDLAGSERSMKTQNEG 394

Query:   236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
             +RLRE   IN+SL  L +C N L+  N  K+  ++ +PFR+SKLT  FQ   +G    + 
Sbjct:   395 ERLRETGNINTSLLTLGKCINALK--NSEKSKFQQHVPFRESKLTHYFQSFFNG-KGKIC 451

Query:   296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAXXXXXXXXXXXXXXFSIMAARNLDWRES 355
             MIVN++      +ET+ VLK S++A+ +  V                S   + +++  ++
Sbjct:   452 MIVNISQCFFAYDETLNVLKFSAIAQKVY-VPDILNSSQEKSFGPVKSQDVSLDINNSDN 510

Query:   356 DIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDF 415
              +V ++R+    T  ++ S +D  E   L+E  L + E     E E+   E  + ++ED 
Sbjct:   511 KVVNEKRS----TISWESSLEDVAEDEDLVED-LEKAEEKQNVETEFTDEELDKTLEEDK 565

Query:   416 RKMFEEQQTDW----ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDE 471
               +  E++       E+  KKL  + +E L  + K  + ++    T    Q+ E D ++ 
Sbjct:   566 AFISREEKRKLLDLIEDLKKKLISERKEKLTLEFKI-REEVTQEFTQYLAQR-EADFKET 623

Query:   472 TLNESAI-EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN----RDLVT 526
              L E  I E   + ++   K  + + + + +    ++ED + K++   R N     D++ 
Sbjct:   624 LLQEREILEENAECRLAIFKDLVGKCDTQEEP---KNEDDAMKVETEERHNYVGIEDIID 680

Query:   527 KNKELEGKVAQLSRRVEEMERGAQTENKPEE-VKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
                 L+  V  + ++ E       +   P+E +  L+  L++ K E  +   E+ + + E
Sbjct:   681 S---LQDDVTDIKKQAEIAHLYIASLADPQEAIACLEIKLNQVKAELAKTKEELIETQEE 737

Query:   586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME---NKFQEESLVY 642
             ++K   E +   V S  L  EL++ +  I ++    +EL +K D  E   NKFQ      
Sbjct:   738 LKKRENESKT-NVNS--LVQELDKSNKKIIMQNQRIQELMDKTDQKEDTINKFQNLKFHM 794

Query:   643 ERLMSEKENLISQLKADLESNRAESNQSAH-DEQALQKEI---KNLGSLLVDKDKTIGDL 698
             E      +N  S   + + ++    N++    E    K     K L  + + +D+     
Sbjct:   795 ENTFKGSDN--SDTSSLIINDNLVGNETVEMSEDRKTKTFSGRKRLNEIELQQDEPPAKK 852

Query:   699 KAKIHKYEKYYAVMKEDRKTKE--KDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEN 756
             +   H      A+  + RK++E  + I+E +     L Q+  +L+       N +KN E 
Sbjct:   853 EGPTHVSP---AITGDQRKSEEMQESISEDEENIRVL-QENNELKTRILIVENELKN-EK 907

Query:   757 DERSTKHNQEKLLKIYEDRLKAVQDELA-EMKCAQLKPSLEASAATPSQYR---KQLEDQ 812
             +E++  + Q  ++ + ++   + +  L   ++  Q++ + E + +     R   ++ E++
Sbjct:   908 EEKAELNKQ--IVSLQQELSSSEKKSLNFSIEVQQIQSNYENAISELKLQRGINEEQEER 965

Query:   813 VNSLKAELEQ-RHNVVRDL-QLKLLQ 836
             +  L  E+E  R N+  ++ Q+KL+Q
Sbjct:   966 IMKLSKEIETTRRNITNNVSQIKLMQ 991

GO:0050699 "WW domain binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NLI8 KIF20A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 422 (153.6 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
 Identities = 134/468 (28%), Positives = 230/468 (49%)

Query:   119 ELFQNIVHNMLERYLNGEDAL--LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGK 176
             E++  +++++LE  L G++            +G  + ++DL ++NV   +EA+++L+ G+
Sbjct:   311 EIYNELIYDLLEPALPGQNRKRQTLRLCEDQTGNPY-VKDLNWINVRDADEAWKLLKLGR 369

Query:   177 SHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI-MMSSFDICDLAGAERQKRAHTSG 235
              + S A T +N  SSRSH +FSI+++ +  G  E++  +S   +CDLAG+ER K    SG
Sbjct:   370 KNQSFASTHMNQNSSRSHSIFSIRILHLQGGGSEIVPKISELSLCDLAGSERCKD-QKSG 428

Query:   236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
             DR++EA  IN+SLH L RC   LR+    K  K+ ++PFRDSKLT++FQ   +G   +  
Sbjct:   429 DRMKEANNINTSLHTLGRCITALRQKQQSKL-KQIVVPFRDSKLTRVFQGFFTGRGRSC- 486

Query:   296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAXXXXXX-XXXXXXXXFSIMAARNLDWRE 354
             MIVN+N   +  +ET+ V K S++A  L+                   S   ++  +  E
Sbjct:   487 MIVNINQCASTYDETLYVAKFSAIASQLVQAPPTKLGLPSIQSIIKEHSRRTSQGSEATE 546

Query:   355 SDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQED 414
              + V  E +  E  D      +D    +      L + E  +K + E ++R E     E 
Sbjct:   547 KEEVKTEDSEDE-ADVSVYEREDLLRVVEAARELLVQ-ERQEKLQLEIRLRTEI--CNEM 602

Query:   415 FRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLN 474
                M +++Q  W  ++   +E  EE  E +    K   E+L    + +  E D + E L 
Sbjct:   603 LESMQQKEQW-WSQHIDAQKELLEELYEDKLNNLK---ESLTDYYQEEIQERDEKIEELQ 658

Query:   475 ESAIEAQHKL--KIQNLKQEL--SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
              +  EA+ KL  K ++ +Q L  S+  A   +L +E  D   KL++   E   L T + E
Sbjct:   659 AALQEAKQKLDAKQRDSEQGLRRSKRVAASCALQQELTDTKAKLEQCQME---LNTTSSE 715

Query:   531 LEGKVAQL-----SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK 573
             L  K  +L     S +   ++   + E+  + V+ L+S L +  E  +
Sbjct:   716 LR-KYQRLLEPPPSAKPITVDVDKKLEDGQKNVRLLRSELQKLGESLQ 762

GO:0000910 "cytokinesis" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1RH90 KIF20A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
 Identities = 118/443 (26%), Positives = 222/443 (50%)

Query:   119 ELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSH 178
             E++  +++++LE                 +G  + ++DL ++NV   EEA+++L+ G+ +
Sbjct:   307 EIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY-VKDLNWINVQDAEEAWKLLKVGRKN 365

Query:   179 LSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRL 238
              S A T LN  SSRSH +FSI+++ +    + +  +S   +CDLAG+ER K    SG+RL
Sbjct:   366 QSFASTHLNQNSSRSHSIFSIRILHLQGDGDIIPKISELSLCDLAGSERCKD-QKSGERL 424

Query:   239 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298
             +EA  IN+SLH L RC   LR+N   ++ K+ L+PFRDSKLT++FQ   +G   +  MIV
Sbjct:   425 KEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVPFRDSKLTRVFQGFFTGRGRSC-MIV 482

Query:   299 NVNASPAYAEETVQVLKISSVARDLLTVAXXXXXX-XXXXXXXXFSIMAARNLDW-RESD 356
             NVN   +  +ET+ V K S++A  L+                   S+ A+ +L+   ++D
Sbjct:   483 NVNPCASTYDETLHVAKFSAIASQLVHAPPLQLGFPSLHSFIKEHSLRASPSLETGAKTD 542

Query:   357 IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEY-REVQEDF 415
                 +    E+ D      ++  + +  ++A L + E  +K + E  +R+E   E+ E  
Sbjct:   543 PSLDDDIENEV-DISTYGKEELLQVVEAMKALLLK-ERQEKLQLEMHLRDEICNEMVEQM 600

Query:   416 RKMFEEQQTDWENNVKKLREQHEEDL----ERQRKFYKTQ-------IETLMTLVKNQQA 464
             ++  +      +   + L E +EE L    E    FY+ +       IE L  L++  + 
Sbjct:   601 QQREQWCSEHLDTQKELLEEMYEEKLTILKESLTSFYQEELQERDEKIEELEALLQEARE 660

Query:   465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDL 524
             +  +  +  +E ++    +L      Q+L E++AK +    E   ++   +EL R+ + +
Sbjct:   661 QSVAHQQPGSELSLRRSQRLAASASTQQLQEIKAKLEQCKAE---LNSTTEEL-RKYQKM 716

Query:   525 VTKNKELEGKVAQLSRRVEEMER 547
             +      +  +  + +++EE ++
Sbjct:   717 LEPPPSAKPFIVDVDKKLEEGQK 739

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|B4DL79 KIF20A "Kinesin-like protein KIF20A" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
 Identities = 111/402 (27%), Positives = 200/402 (49%)

Query:   119 ELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSH 178
             E++  +++++LE                 +G  + ++DL +++V   EEA+++L+ G+ +
Sbjct:   289 EIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY-VKDLNWIHVQDAEEAWKLLKVGRKN 347

Query:   179 LSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRL 238
              S A T LN  SSRSH +FSI+++ +    + +  +S   +CDLAG+ER K    SG+RL
Sbjct:   348 QSFASTHLNQNSSRSHSIFSIRILHLQGEGDIVPKISELSLCDLAGSERCKD-QKSGERL 406

Query:   239 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298
             +EA  IN+SLH L RC   LR+N   ++ K+ L+PFRDSKLT++FQ   +G   +  MIV
Sbjct:   407 KEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVPFRDSKLTRVFQGFFTGRGRSC-MIV 464

Query:   299 NVNASPAYAEETVQVLKISSVARDLLTVAXXXXXX-XXXXXXXXFSIMAARNLD-WRESD 356
             NVN   +  +ET+ V K S++A  L+                   S+  + +L+   ++D
Sbjct:   465 NVNPCASTYDETLHVAKFSAIASQLVHAPPMQLGFPSLHSFIKEHSLQVSPSLEKGAKAD 524

Query:   357 IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEY-REVQEDF 415
                 +    E  D      ++  + +  ++  L + E  +K + E  +R+E   E+ E  
Sbjct:   525 TGLDDDIENE-ADISMYGKEELLQVVEAMKTLLLK-ERQEKLQLEMHLRDEICNEMVEQM 582

Query:   416 RKMFEEQQTDWENNVKKLREQHEEDL----ERQRKFYKTQI-------ETLMTLVKNQQA 464
             ++  +      +   + L E +EE L    E    FY+ +I       E L  L++  + 
Sbjct:   583 QQREQWCSEHLDTQKELLEEMYEEKLNILKESLTSFYQEEIQERDEKIEELEALLQEARQ 642

Query:   465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEE 506
             +  +  ++ +E A+    +L      Q+L E++AK +    E
Sbjct:   643 QSVAHQQSGSELALRRSQRLAASASTQQLQEVKAKLQQCKAE 684

GO:0000910 "cytokinesis" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q29RT6 KIF20A "Kinesin-like protein KIF20A" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
 Identities = 121/435 (27%), Positives = 220/435 (50%)

Query:   119 ELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSH 178
             E++  +++++LE                 +G  + ++DL +++V   EEA+++L+ G+ +
Sbjct:   306 EIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY-VKDLNWIHVQDAEEAWKLLKVGRKN 364

Query:   179 LSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRL 238
              S A T LN  SSRSH +FSI+++ +    + +  +S   +CDLAG+ER K    SG+RL
Sbjct:   365 QSFASTHLNQNSSRSHSIFSIRILHLQGEGDIIPKISELSLCDLAGSERCKD-QKSGERL 423

Query:   239 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298
             +EA  IN+SLH L RC   LR+N   ++ K+ L+PFRDSKLT++FQ   +G   +  MIV
Sbjct:   424 KEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVPFRDSKLTRVFQGFFTGRGRSC-MIV 481

Query:   299 NVNASPAYAEETVQVLKISSVARDLLTVAXXXXXX-XXXXXXXXFSIMAARNLDW-RESD 356
             NVN   +  +ET+ V K S++A  L+                   S+ A+ +L+   ++D
Sbjct:   482 NVNPCASTYDETLHVAKFSAIASQLVHAPPVQLGFPSIHSFLKEHSLRASPSLETGAKTD 541

Query:   357 IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEY-REVQEDF 415
                 +    E+ D      ++  + +  ++A L + E  +K   E Q+R+E   E+ E  
Sbjct:   542 PGLGDDIENEV-DISTYGKEELLQVVEAMKALLLK-ERQEKLRLEVQLRDEICNEMVEQM 599

Query:   416 --RKMFEEQQTD---------WENNVKKLREQ----HEEDLERQRKFYKTQIETLMTLVK 460
               R+ +  +  D         +E+ +  L+E     ++E+L+ + +  K ++E L+   +
Sbjct:   600 QQREQWCSEHLDTQKELLEELYEDKLTILKESLTSFYQEELQERDEKIK-ELEALLQEAR 658

Query:   461 NQQ-AEDDSEDE-TLNESA-IEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL 517
              QQ A   S  E +L  S  + +    +   +K +L + +A+  S +EE +     L+  
Sbjct:   659 QQQVAHQPSGSELSLRRSQRLTSVSTQQFHEIKAKLEQCKAELNSTTEELQKYQKMLEPP 718

Query:   518 TRENRDLVTKNKELE 532
                   +V  +K+LE
Sbjct:   719 PSAKPFIVDVDKKLE 733

GO:0005819 "spindle" evidence=ISS

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|O95235 KIF20A "Kinesin-like protein KIF20A" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
 Identities = 111/402 (27%), Positives = 200/402 (49%)

Query:   119 ELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSH 178
             E++  +++++LE                 +G  + ++DL +++V   EEA+++L+ G+ +
Sbjct:   307 EIYNELLYDLLEPPSQQRKRQTLRLCEDQNGNPY-VKDLNWIHVQDAEEAWKLLKVGRKN 365

Query:   179 LSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRL 238
              S A T LN  SSRSH +FSI+++ +    + +  +S   +CDLAG+ER K    SG+RL
Sbjct:   366 QSFASTHLNQNSSRSHSIFSIRILHLQGEGDIVPKISELSLCDLAGSERCKD-QKSGERL 424

Query:   239 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298
             +EA  IN+SLH L RC   LR+N   ++ K+ L+PFRDSKLT++FQ   +G   +  MIV
Sbjct:   425 KEAGNINTSLHTLGRCIAALRQNQQNRS-KQNLVPFRDSKLTRVFQGFFTGRGRSC-MIV 482

Query:   299 NVNASPAYAEETVQVLKISSVARDLLTVAXXXXXX-XXXXXXXXFSIMAARNLD-WRESD 356
             NVN   +  +ET+ V K S++A  L+                   S+  + +L+   ++D
Sbjct:   483 NVNPCASTYDETLHVAKFSAIASQLVHAPPMQLGFPSLHSFIKEHSLQVSPSLEKGAKAD 542

Query:   357 IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEY-REVQEDF 415
                 +    E  D      ++  + +  ++  L + E  +K + E  +R+E   E+ E  
Sbjct:   543 TGLDDDIENE-ADISMYGKEELLQVVEAMKTLLLK-ERQEKLQLEMHLRDEICNEMVEQM 600

Query:   416 RKMFEEQQTDWENNVKKLREQHEEDL----ERQRKFYKTQI-------ETLMTLVKNQQA 464
             ++  +      +   + L E +EE L    E    FY+ +I       E L  L++  + 
Sbjct:   601 QQREQWCSEHLDTQKELLEEMYEEKLNILKESLTSFYQEEIQERDEKIEELEALLQEARQ 660

Query:   465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEE 506
             +  +  ++ +E A+    +L      Q+L E++AK +    E
Sbjct:   661 QSVAHQQSGSELALRRSQRLAASASTQQLQEVKAKLQQCKAE 702

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000910 "cytokinesis" evidence=IDA;TAS

GO:0005819 "spindle" evidence=IDA

GO:0001578 "microtubule bundle formation" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005215 "transporter activity" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

UNIPROTKB|G3MX17 G3MX17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 476 (172.6 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
 Identities = 217/886 (24%), Positives = 401/886 (45%)

Query:     4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
             +GT E  GI+PRTLN+LF+SL   L  + +  +P  +     LS +   +    K  +L 
Sbjct:   164 QGTEENTGILPRTLNVLFDSLQERL-YTKMNLKPHRSREYLRLSPDQEKEEVASKSALLR 222

Query:    64 SFDQ------SYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQ 117
                +      SY G+ + ++   L       + MKD + S  +  ++ R  +++    + 
Sbjct:   223 QIKEVVMHNDSY-GALYGSLTNSLSIPEFE-ESMKDCEHSNLNI-DINRKFSVW---VSF 276

Query:   118 AELFQNIVHNMLERYLNG-EDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGK 176
              E++   ++++     +  +            G +F I+DL ++ V   +EAYR+L+ G 
Sbjct:   277 FEIYNECIYDLFVPVSSKFQKRKTLRLSQDVKGYSF-IKDLQWIQVSDAKEAYRLLKLGT 335

Query:   177 SHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-EELIMMSSFDICDLAGAERQKRAHTSG 235
              H SVA T+LN+ SSRSH +F+I++++++      +I +S   +CDLAG+ER  R    G
Sbjct:   336 KHQSVAFTKLNNASSRSHSIFTIRILQIEDSEIPHVIRVSELSLCDLAGSERSMRTQNEG 395

Query:   236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
             +RLRE   IN+SL  L +C +VL+  N  K+  ++ +PFR+SKLT  FQ   +G    + 
Sbjct:   396 ERLRETGNINTSLLTLGKCISVLK--NSEKSKFQQHVPFRESKLTHYFQSFFNG-KGKIC 452

Query:   296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAXXXXXXXXXXXXXXFSIMAARNLDWRES 355
             MIVN++      +ET+ VLK S++A+ +  V                S     +LD   S
Sbjct:   453 MIVNISQCSFTYDETLNVLKFSAIAQKVY-VPDILNCSQEKSFGSNSS--QDESLDINNS 509

Query:   356 DI-VFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQED 414
             D  +  E+ S   T  ++ S +D  E   L+E  L + E     E E+ I E+  +  ED
Sbjct:   510 DNKILNEKRS---TISWESSLEDVVEDEDLVED-LEKAEEKQNVETEF-IDEDLDDTLED 564

Query:   415 FRKMF-----EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSE 469
               K F     + +  D   ++KKL  + +E L  + K      +     +  ++A  D +
Sbjct:   565 -DKAFSSHAGKRKLLDLIEDLKKLINERKEKLTLEFKICDEVTQEFTQYLAQREA--DFK 621

Query:   470 DETLNESAI-EAQHKLKIQNLKQELSELEAKYKSLSEEH------EDMSGKLK-ELTREN 521
             +  L E  I E   + ++   K  + + +A+ +  +E+H      E+    L+ +  +  
Sbjct:   622 ETLLQEREILEENAECRLAIFKDLIGKCDAQEEPKNEDHAIKDETEEAIACLEIKFNQVK 681

Query:   522 RDLV-TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIE 580
              +L  TK + ++ +   L   +E   +G+        +   K + DE  E +K+  T+  
Sbjct:   682 AELAKTKEELIKTREENLKFHMENTCKGSDNVGNSSLIINSKLVCDETTEMYKDSKTKTY 741

Query:   581 QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN-KFQEES 639
               R   ++L+E    L       +  L      I      +EE+QE +   EN +  +E+
Sbjct:   742 SGR---KRLNENE--LQQDEPPAKKGLTHASPAITEDQKKSEEMQETISDEENIRLLQEN 796

Query:   640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQK-EIKNLG-SLLVDK-----D 692
                E L +    + ++LK + E     + Q    +Q L   E K+LG S+ + +     D
Sbjct:   797 --NEELKTHLLTIENELKNEKEEKTELNKQIVSLQQELSSSEKKSLGFSIEIQQIQSSYD 854

Query:   693 KTIGDLKA-KIHKYEKYYAVMK--EDRKTKEKDIAELKTKCEELTQQVTKLEA-DCQSYL 748
               I +L   K    E+   +MK  E+ +T  ++I    ++ + +  ++ +L   D  S +
Sbjct:   855 NVISELHVQKSINQEQKERIMKLSEEIETAGRNITNNVSQIKLMQAKIDELRRLDSVSQI 914

Query:   749 NTIKNMENDERSTKHNQEKLLKIYED-RLKAVQD--------ELAEMKCAQLKPSLEASA 799
               I  +   + S+   ++ L   Y+  +   +Q+           E    + K  +  S+
Sbjct:   915 ENIDLLHLRDLSSCSQEDNLPNTYKQVKEHGIQELSRERSFHSTVEAIWEECKEIVMTSS 974

Query:   800 ATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLK 845
               P Q  ++LE Q+  L+AE++   N    L+++  +K    + LK
Sbjct:   975 KKPHQI-EELEQQIEKLQAEVKDYTNENNRLKIEEREKKNQDDLLK 1019

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2QUT0 KIF20B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 463 (168.0 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
 Identities = 202/862 (23%), Positives = 408/862 (47%)

Query:     4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILN 63
             +GT E  GI+PRTLN+LF+SL   L  + +  +P  +     LS     +    K  +L 
Sbjct:   163 QGTEENIGILPRTLNVLFDSLQERL-YTKMNLKPHRSREYLRLSPYQEKEEVASKSALLR 221

Query:    64 SFDQSYA-GSTFENVLEVLDQKSIMFKPMKDMK-CSITDTCNLYRFSNI-YGPHTTQAEL 120
                +      ++E++   L     + +  + MK C   +  +L   +NI +    +  E+
Sbjct:   222 QIKEVVMQNDSYESLYGSLTNSLNIPESEESMKDC---EQASLNMNNNIKFSVWVSFFEI 278

Query:   121 FQNIVHNMLERYLNG-EDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHL 179
             +   V+++    L+  +   +        G +F I+DL ++ V   +EAYR+L+ G  H 
Sbjct:   279 YNECVYDLFVPVLSKFQKRKILRLSQDVKGYSF-IKDLQWIQVSDSKEAYRLLKLGIKHQ 337

Query:   180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM-MSSFDICDLAGAERQKRAHTSGDRL 238
             SVA T+LN+ SSRSH +F+I++++++      +M +S   +CDLAG+ER  +    G+RL
Sbjct:   338 SVAFTKLNNASSRSHSIFTIRILQIEDSEMPRVMRVSELCLCDLAGSERTMKTQNEGERL 397

Query:   239 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298
             RE   IN+SL  L +C NVL+  N  K+  ++ +PFR+SKLT  FQ   +G    + MIV
Sbjct:   398 RETGNINTSLLTLGKCINVLK--NSEKSKFQQHVPFRESKLTHYFQSFFNG-KGKICMIV 454

Query:   299 NVNASPAYAEETVQVLKISSVARDLLTVAXXXXXXXXXXXXXXFSIMAARNLDWRESDIV 358
             N++      +ET+ VLK S++A+ +                   S  A+ +++   + ++
Sbjct:   455 NISQCYFAYDETLNVLKFSAIAQKVYVPDTLNSSQEKSFGPAKSSQDASLDINNSVNKML 514

Query:   359 FQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKM 418
               +R+    T  ++   +D  E   L E    E  G + +  E    +  + ++ED   +
Sbjct:   515 NVKRS----TILWESGLEDLVEDEDLTEN--PE-NGEENQNGELTDEDLDKTLEEDKAFI 567

Query:   419 -FEEQQT--DW-ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLN 474
              +EE++   D  E+  KKL  + +E L  + K  + ++    T    Q+ E D ++  L 
Sbjct:   568 SYEEKRKLLDLIEDLKKKLINERKEKLTLEFKI-RDEVTQEFTQYLAQR-EADFKETLLQ 625

Query:   475 ESAI-EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN----RDLVTKNK 529
             E  I E   + ++   K  + + + + + ++E   D + K++     N     D++    
Sbjct:   626 EREILEENAECRLAIFKDLVGKCDTQEEPVNE---DCAVKVETKEAHNYIGIEDIIDS-- 680

Query:   530 ELEGKVAQLSRRVEEMERGAQTENKPEE-VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
              L+  V  + ++ E       +   P+E +  L+   ++ K E  +   E+ + + E++K
Sbjct:   681 -LQDDVTDIKKQAEIAHLYITSLADPQEAIACLEIKFNQVKAELAKTKEELVKTQEELKK 739

Query:   589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSE 648
                E  +  + S  L  ELE+ +  I       + +QE +D  + K  E+ + ++ L   
Sbjct:   740 RQNESEI-NLNS--LIQELEKSNKKIYTNN---QRIQELIDINDQK--EDIIKFQNLKFH 791

Query:   649 KENLISQLKADLESNRAESNQSAHDEQA-LQKEIK---NLGSLLVDKDKT-IGDLKAKIH 703
              EN  +       S+  ++N+   +E   + K+ K   +LG   ++K++  + +  AK  
Sbjct:   792 TENTFASTDEAGTSSLVKNNKLTSNETVEVPKDDKTKTDLGRKRINKNELQLEEPPAKKG 851

Query:   704 KYEKYYAVMKEDRKTKE--KDIAELKTKCEELTQQVTKLEADCQSYLNTIKN-MENDERS 760
                   A+ ++++K++E  K+I+E   +   + Q+  K    C   L T KN ++N++  
Sbjct:   852 PLHVSPAITEDEKKSEEMPKNISE--DEDIRILQENNKELKTC---LLTAKNELKNEKEE 906

Query:   761 TKHNQEKLLKIYEDRLKAVQDELA-EMKCAQLKPSLEASAATPSQYR---KQLEDQVNSL 816
                  +K++ + ++   + +      ++  Q++ + + + +     R   ++ E+++  L
Sbjct:   907 KAELNKKIISLQQELSFSEKKSFTLSIEVQQIQSNYDNAISELHVQRGINQEQEEKIVKL 966

Query:   817 KAELEQ-RHNVVRDL-QLKLLQ 836
               E+E  R N+  ++ Q++L+Q
Sbjct:   967 SKEIETARRNITNNVSQIQLMQ 988

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	932
cd00106	328	cd00106, KISc, Kinesin motor domain	6e-47
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	5e-45
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	5e-44
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	6e-43
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	9e-35
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	3e-30
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	4e-30
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	3e-29
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	8e-29
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	2e-27
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	4e-27
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	8e-27
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-24
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	5e-24
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	8e-24
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	1e-22
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-21
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	5e-20
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-18
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	1e-14
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-14
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	7e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-13
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-10
cd00106	328	cd00106, KISc, Kinesin motor domain	2e-10
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-09
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	9e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	8e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	9e-08
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-07
TIGR00606	1311	TIGR00606, rad50, rad50	4e-07
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-07
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	2e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-06
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	2e-06
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-06
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	5e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-06
TIGR00606	1311	TIGR00606, rad50, rad50	6e-06
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	6e-06
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	7e-06
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	7e-06
pfam13166	713	pfam13166, AAA_13, AAA domain	7e-06
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	2e-05
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	3e-05
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	3e-05
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	4e-05
TIGR00606	1311	TIGR00606, rad50, rad50	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
PLN03229	762	PLN03229, PLN03229, acetyl-coenzyme A carboxylase	6e-05
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	9e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	2e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	2e-04
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	3e-04
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	4e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-04
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	4e-04
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	4e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	4e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	4e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-04
pfam00038	312	pfam00038, Filament, Intermediate filament protein	5e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	5e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	8e-04
pfam07227	446	pfam07227, DUF1423, Protein of unknown function (D	8e-04
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	0.001
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.001
pfam09789	319	pfam09789, DUF2353, Uncharacterized coiled-coil pr	0.001
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.001
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.002
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
pfam04156	186	pfam04156, IncA, IncA protein	0.002
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.003
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.003
pfam13166	713	pfam13166, AAA_13, AAA domain	0.004
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.004
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.004

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  170 bits (434), Expect = 6e-47
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD- 205
           +      ++ LT V V S E+A  +L+ G  + + A T +N RSSRSH +F+I + + + 
Sbjct: 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNT 218

Query: 206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
                 I  S  ++ DLAG+ER K+    GDRL+EA+ IN SL  L    + L       
Sbjct: 219 TNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ--- 275

Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             KKK IP+RDSKLT++ Q SL G S T+ MI N++ S    +ET+  L+ +S A+
Sbjct: 276 --KKKHIPYRDSKLTRLLQDSLGGNSKTL-MIANISPSSENYDETLSTLRFASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score =  165 bits (420), Expect = 5e-45
 Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 9/175 (5%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEEL-- 211
           +  LT V V S EEA  V + G+ +  VA T+LN  SSRSH VF+IKLV+    S+    
Sbjct: 173 VAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232

Query: 212 -----IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
                I +S   + DLAG+ER  R   +G+RL+EA  IN+SL  L +C  VLREN  L  
Sbjct: 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQ-LSG 291

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
              K++P+RDSKLT +FQ    G     +MIVNVN   +  +ET+ V+K S++A+
Sbjct: 292 STNKMVPYRDSKLTHLFQNYFDG-EGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  161 bits (411), Expect = 5e-44
 Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 8/172 (4%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
            ++ LT V V S EE   +L  G  + +VA T +N  SSRSH +F+I + + +  ++  +
Sbjct: 162 YVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSV 221

Query: 213 MMSSFDICDLAGAERQKRA-HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
                ++ DLAG+ER  +     G RL+EA  IN SL  L    N L EN      +   
Sbjct: 222 KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAEN------QSSH 275

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           IP+RDSKLT++ Q SL G S T+ MI N++ S +  EET+  L+ +S A+++
Sbjct: 276 IPYRDSKLTRLLQDSLGGNSKTL-MIANISPSDSNYEETLSTLRFASRAKNI 326

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  159 bits (404), Expect = 6e-43
 Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
            ++ LT ++V S EE Y +L  G  + +VA T++N  SSRSH VF+I +     +  S  
Sbjct: 163 YVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGS 222

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
               S  ++ DLAG+ER K+    GDRL+EA  IN SL  L    N L +++     K +
Sbjct: 223 GK-ASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHS-----KSR 276

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
            IP+RDSKLT++ Q SL G S T+ MI NV+ S +  EET+  L+ +S A+++     
Sbjct: 277 HIPYRDSKLTRLLQDSLGGNSKTL-MIANVSPSSSNLEETLSTLRFASRAKEIKNKPI 333

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  135 bits (342), Expect = 9e-35
 Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 148 SGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207
            G+T  + +LT V V S EE  R+L  G  + SVA T +N  SSRSH VF +K+   +  
Sbjct: 161 KGET-YVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ 219

Query: 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
           + E       ++ DLAG+ER K++  +GDRL+EA+ IN SL  L    + LR        
Sbjct: 220 TGE-QTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS------- 271

Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           K   +P+R+SKLT + Q SL G S T+ M VN++   +   ET+  L+
Sbjct: 272 KDSHVPYRNSKLTYLLQDSLGGNSKTL-MFVNISPLESNLSETLCSLR 318

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  122 bits (309), Expect = 3e-30
 Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI--KLVKVDPGSEEL 211
           ++DL+ V V S E+   +L  G    + A T +N  SSRSH VF+I     K+D  ++  
Sbjct: 177 VEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236

Query: 212 IMMSS-FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLREN-NGLKADKK 269
               S   + DLAG+ER       GDRL+E   IN SL  L +  + L +N +     K 
Sbjct: 237 TEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKS 296

Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
             IP+RDS LT + + +L G S T  MI  ++ +    EET+  L+ +  A+ ++ VA 
Sbjct: 297 SFIPYRDSVLTWLLKENLGGNSKTA-MIATISPADINYEETLSTLRYADRAKKIVNVAV 354

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score =  122 bits (307), Expect = 4e-30
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE--E 210
            +  LT     S EE   +L  G  + +  PTE N  SSRSH V  I + + D  +   +
Sbjct: 171 VVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQ 230

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
            + +    + DLAG+ER    +  G RL+E   IN SL  L  C N L +       K K
Sbjct: 231 QVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK----KNK 286

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARD 322
            IP+RDSKLT++ + SL G   TV MI N++ S ++ EET   LK ++ A++
Sbjct: 287 HIPYRDSKLTRLLKDSLGGNCKTV-MIANISPSSSHYEETHNTLKYANRAKN 337

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  119 bits (301), Expect = 3e-29
 Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 14/178 (7%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
            I  LT V V+S +E    L  G    + A T +N +SSRSH +F+I L   + +     
Sbjct: 166 IIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP 225

Query: 211 LIMM-------SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 263
           +          S F   DLAG+ER K+   +GDRL+E  +INS L  L    + L    G
Sbjct: 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISAL----G 281

Query: 264 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
            ++ K   +P+RDSKLT++ Q SL G S T+ MI  V+ + +  EET+  LK ++ AR
Sbjct: 282 DESKKGSHVPYRDSKLTRLLQDSLGGNSHTL-MIACVSPADSNFEETLNTLKYANRAR 338

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score =  118 bits (298), Expect = 8e-29
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 10/174 (5%)

Query: 143 FGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202
           F  TN+     IQ L  + V++  E  ++L  G +    A T +N +SSRSH +FSI + 
Sbjct: 169 FDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIH 228

Query: 203 KV--DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRE 260
                   EEL+ +   ++ DLAG+E   R+     R REA  IN SL  L R  N L  
Sbjct: 229 IKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINAL-- 286

Query: 261 NNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVL 314
                 +K   IP+R+SKLT++ Q SL G + T  +I  ++ +    EET+  L
Sbjct: 287 -----VEKSPHIPYRESKLTRLLQDSLGGRTKTS-IIATISPASINLEETLSTL 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  114 bits (286), Expect = 2e-27
 Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 9/172 (5%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEEL 211
           ++DL+   V + EE  +++  G  + SV  T +N  SSRSH +F+I +   + G   E  
Sbjct: 169 VKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENH 228

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           I +   ++ DLAG+ERQ +   +GDRL+EA  IN SL  L    NV+   + L   K   
Sbjct: 229 IRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALG---NVI---SALVDGKSTH 282

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           IP+RDSKLT++ Q SL G S TV M  N+  +    +ET+  L+ ++ A+++
Sbjct: 283 IPYRDSKLTRLLQDSLGGNSKTV-MCANIGPADYNYDETLSTLRYANRAKNI 333

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  113 bits (284), Expect = 4e-27
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           ++ LT   V S EE   V+  GKS+ +VA T +N  SSRSH +F I L + +  +     
Sbjct: 164 VKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGS-KK 222

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
                + DLAG+E+  +    G  L EA+ IN SL  L    N L +       K   IP
Sbjct: 223 RGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDG------KSTHIP 276

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           +RDSKLT+I Q SL G S T  +I+  + S     ET+  L+
Sbjct: 277 YRDSKLTRILQDSLGGNSRTT-LIICCSPSSYNESETLSTLR 317

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score =  112 bits (281), Expect = 8e-27
 Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
            +  LT   V S E   +++  G+ +  V  T+ N RSSRSH +F + +   +       
Sbjct: 156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESG 215

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
            + +S+ ++ DLAG+ER  +   +G+R +E   IN SL  L    + L E          
Sbjct: 216 TVRVSTLNLIDLAGSERASQ-TGAGERRKEGSFINKSLLTLGTVISKLSEG-----KNSG 269

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
            IP+RDSKLT+I Q SLSG ++   +I  ++ + ++ EET+  LK +S A+ +
Sbjct: 270 HIPYRDSKLTRILQPSLSG-NARTAIICTISPASSHVEETLNTLKFASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score =  105 bits (263), Expect = 2e-24
 Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 10/177 (5%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KV 204
           +S +   ++ L+  +  + EEA  +L  G+++ ++A T +N  SSRSHC+F+I L     
Sbjct: 166 DSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSR 225

Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
           + GSE  + +S  ++ DLAG+ER  +   SG  L+EA+ IN SL  L +  N L E    
Sbjct: 226 EAGSEV-VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA-- 282

Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
               +  +P+R+SKLT + + SL G   TV M+  +   P+  +ET+  L+ +    
Sbjct: 283 ----RTHVPYRNSKLTHVLRDSLGGNCKTV-MLATIWVEPSNLDETLSTLRFAQRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score =  104 bits (260), Expect = 5e-24
 Identities = 65/177 (36%), Positives = 96/177 (54%), Gaps = 7/177 (3%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +  K   +++LT   V S E+ Y+VL  G S+  VA T +N  SSRSH VF+  +   + 
Sbjct: 164 DIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEK 223

Query: 207 GSEEL-IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLREN-NGL 264
            +    I  S  ++ DLAG+ERQK     G RL+EA+ IN SL  L      L +  +G 
Sbjct: 224 KASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG- 282

Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
              K++ +P+RDSKLT + + SL G + T  +I NV+ S     ET+  LK +  A+
Sbjct: 283 ---KQRHVPYRDSKLTFLLRDSLGGNAKTT-IIANVSPSSKCFGETLSTLKFAQRAK 335

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 99.5 bits (248), Expect = 8e-24
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 123 NIVHNMLERYLNGEDALLFSFGTTNSGKTFTI---QDLTYVNVHSCEEAYRVLRFGKSHL 179
             V  +L+  L+G +  +F++G T SGKT+T+   ++   +   +  +   ++  G ++ 
Sbjct: 10  RDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANR 69

Query: 180 SVAPTELNHRSSRSHCVFSIKLV--KVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
           + A T +N  SSRSH VF I          + E   +   ++ DLAG+ER   +   G R
Sbjct: 70  TTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSR 129

Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
           L E   IN SL  L    + L       A++   +P+R+SKLT++ Q SL G S T+ M+
Sbjct: 130 LTETANINKSLSTLGNVISAL-------AERDSHVPYRESKLTRLLQDSLGGNSRTL-MV 181

Query: 298 VNVNASP 304
             +  SP
Sbjct: 182 ACI--SP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 99.5 bits (248), Expect = 1e-22
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
           G    I  LT   + S  E          + +VA T+LN  SSRSH V     +KV   +
Sbjct: 159 GNIL-IVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVL---RIKVTQPA 214

Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
             + +    ++ DLAG+E  +R    G RL+E+  INSSL VL++  + L  N GL    
Sbjct: 215 SNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDAL--NKGLPR-- 270

Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
              IP+R+SKLT++ Q SL G S  + M+ N+    ++ ++T+  L  +S ++
Sbjct: 271 ---IPYRESKLTRLLQDSLGGGSRCI-MVANIAPERSFYQDTLSTLNFASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 99.8 bits (249), Expect = 1e-21
 Identities = 93/400 (23%), Positives = 149/400 (37%), Gaps = 30/400 (7%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
            +  LT  +V S EE   +LR G+ + + A TE+N  SSRSH +F I+L   +  S    
Sbjct: 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSE 232

Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
             S   + DLAG+ER  R    G RL+E  +IN SL  L    N L +           I
Sbjct: 233 T-SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGH-----I 286

Query: 273 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHL 332
           P+R+SKLT++ Q SL G  +T  +I  ++ S    EET+  LK +S A+ +    +    
Sbjct: 287 PYRESKLTRLLQDSLGGNCNTR-VICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345

Query: 333 PPPPRK--KTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLA 390
               R+  + +F +   R+           + +   ++  F        ET  L      
Sbjct: 346 SDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDL 405

Query: 391 EFEGFDKKEFEY------QIREEYREVQ-------EDFRKMFEEQQTDWENNVKKLREQH 437
             +      FE       +  +    +Q              EE         K  + +H
Sbjct: 406 IMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRH 465

Query: 438 E-EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESA-IEAQHKLKIQNLKQELSE 495
           +   L        +         K + +     +   + S      H     +  +ELS 
Sbjct: 466 DLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELSL 525

Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV 535
            +     L+     +S  + EL RE + L   NK L    
Sbjct: 526 NQ---VDLAGSERKVSQSVGELLRETQSL---NKSLSSLG 559

Length = 568

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 91.9 bits (229), Expect = 5e-20
 Identities = 52/170 (30%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +      I  LT   V S +E   ++  G S  +   T  N +SSRSH +  I L     
Sbjct: 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL 218

Query: 207 GSEELIMMSSFDICDLAGAER-QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
                  +      DLAG+ER    +       +E   IN SL  L  C   L       
Sbjct: 219 NKL----LGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRAL------- 267

Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           A  K  +PFR SKLTQ+ + S  G S TV MI  ++ S +  E T+  L+
Sbjct: 268 ASNKAHVPFRGSKLTQVLRDSFIGNSKTV-MIATISPSASSCEHTLNTLR 316

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 91.3 bits (227), Expect = 1e-18
 Identities = 78/301 (25%), Positives = 145/301 (48%), Gaps = 14/301 (4%)

Query: 473 LNESAIEAQHKLKIQNLKQELSELEA-----KYKSLSEEHEDMSGKLKELTRENRDLVTK 527
           L +   +A+   + Q LK EL ELE      K K L +E E++  +L  L  E  +L  +
Sbjct: 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE 261

Query: 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
            +E E ++ +L   +EE+          EE++ L+  L E KEE +E   EI  LR  +E
Sbjct: 262 LEEAEKEIEELKSELEELR---------EELEELQEELLELKEEIEELEGEISLLRERLE 312

Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
           +L  E   L  R  EL+ ++E     +  +    EEL++ L  +E   +E       L+ 
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372

Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
           E E L   L+ +L    AE  +  ++ + L++EI++L   L    + + DLK ++ + E 
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432

Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
               ++ + +   +++ EL+ + EEL  ++ +LE +       ++ +E +  S +   ++
Sbjct: 433 ELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492

Query: 768 L 768
           L
Sbjct: 493 L 493

Length = 1163

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 78.4 bits (193), Expect = 1e-14
 Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
           +++LT   V + ++  ++L  G S+     T +N  SSRSH VF+  +    K       
Sbjct: 265 VENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLS 324

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
               S  ++ DLAG+ERQK    +GDRL+EA  IN SL  L    N+L E +  +  K++
Sbjct: 325 SFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS--QTGKQR 382

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
            IP+RDS+LT + Q SL G ++ + M+  ++ S +   ET   L+ +  A+
Sbjct: 383 HIPYRDSRLTFLLQESLGG-NAKLAMVCAISPSQSCKSETFSTLRFAQRAK 432

Length = 1320

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 76.7 bits (189), Expect = 4e-14
 Identities = 113/486 (23%), Positives = 209/486 (43%), Gaps = 52/486 (10%)

Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQ 444
           LE    E E  +++    +   E  E   +  K  EE+    E  ++KL  + EE  E +
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 445 RKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLS 504
            +  K   E L  L   ++  ++ E E         Q +  IQ LK+EL+EL A  + + 
Sbjct: 353 NELAKLLEERLKEL---EERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409

Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK---------P 555
           EE E++  +L+EL RE  +L  + K+LE ++ QL  +   +   A    K          
Sbjct: 410 EELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPE 469

Query: 556 EEVKYLKSLLDEAKEEFKEQ---TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDY 612
           E  K L  L +   EE +E+     E  +LR E+E+L +E R L     EL    E    
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKE 529

Query: 613 LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAH 672
            +  K +  E L E+L+ ++ K Q + L  +  + + E+ + +LK  LE  R    +   
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQLQQL--KEELRQLEDRLQELKELLEELRLLRTRKE- 586

Query: 673 DEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
           + + L++ +K L   L + ++ +  L+  +   E   A              EL+   EE
Sbjct: 587 ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA------------ENELEEAEEE 634

Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK 792
           L  ++ KL           +  E  + + +  +EK+ ++  +  + +Q    E +  +  
Sbjct: 635 LESELEKLNL-------QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKL 687

Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
             LE           QLE+++  L+ ELE     +     ++ Q  E + + KA++E+ +
Sbjct: 688 EELE-----------QLEEELEQLREELE----ELLKKLGEIEQLIEELESRKAELEELK 732

Query: 853 QQQQQQ 858
           ++ ++ 
Sbjct: 733 KELEKL 738

Length = 908

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 75  ENVLEVLDQKSIMFKP------MKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM 128
           E  +EV++  +I   P       K  +         + FS ++GP+TTQ E F+     +
Sbjct: 22  EGCIEVINSTTIQLHPPKGSAARKSERNGGQKE-TKFSFSKVFGPNTTQKEFFEGTALPL 80

Query: 129 LERYLNGEDALLFSFGTTNSGKTFTIQ 155
           ++  L G+++LLF++G TNSGKT+T+Q
Sbjct: 81  VQDLLKGKNSLLFTYGVTNSGKTYTMQ 107

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 75.1 bits (185), Expect = 1e-13
 Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 382 IRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDL 441
           + LL  RL E    ++ E   +  +E  E  E+     +E +   E    ++ E  EE  
Sbjct: 227 LALLVLRLEELR--EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284

Query: 442 ERQRKFY--KTQIETL-MTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEA 498
           E Q++ Y    +I  L       ++   + E +     A   + + K+  L +EL+ELE 
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
           K + L EE E +  +L+EL  E  +L ++ +ELE ++  L  +V ++E    + N   E+
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN--EI 402

Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
           + L++ L+  ++  +    EIE+L  ++E+   E + L     ELE ELE+    +    
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLE 460

Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
           +  EEL+E+L+  E           +L +  ++L    
Sbjct: 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 73.6 bits (181), Expect = 4e-13
 Identities = 77/359 (21%), Positives = 166/359 (46%), Gaps = 19/359 (5%)

Query: 403  QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
            ++ EE  E++    K  EE+    +N ++ L +  EE   +  +  +   E    L   +
Sbjct: 671  ELEEELAELEAQLEK-LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 463  QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR 522
            +  +  +           + + +++ L++ L ELE + +SL E    +  +++EL  + +
Sbjct: 730  EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 523  DLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582
             L  + +ELE ++ +  RR++ +ER  ++  +  E   L+  ++E +EE +E   ++++L
Sbjct: 790  ALQEELEELEEELEEAERRLDALERELESLEQRRE--RLEQEIEELEEEIEELEEKLDEL 847

Query: 583  RSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVY 642
              E+E+L +E   L     ELE E E+ +  +    +  EEL+E+L  +E++  E     
Sbjct: 848  EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE----- 902

Query: 643  ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702
              L  E E L  +L+           +    E+ L++E ++     ++++  I  L+ +I
Sbjct: 903  --LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE--IERLEEEI 958

Query: 703  HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERST 761
                       E+ +  E+   ELK++ E+L +   KL       L  I+ ++ ++R  
Sbjct: 959  EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL-------LEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 73.3 bits (180), Expect = 4e-13
 Identities = 105/506 (20%), Positives = 219/506 (43%), Gaps = 48/506 (9%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
           E    L+++  E +    + F  +  E+  E+ ++  K  + +  + E  + +L E  E+
Sbjct: 144 EFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIED 203

Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAI-EAQHKLKIQNLKQELSELEA 498
            LE                          E+E      + E Q + + + L+QE+  LE 
Sbjct: 204 LLEAL------------------------EEELKELKKLEEIQEEQEEEELEQEIEALEE 239

Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT-ENKPEE 557
           +   L EE E +      L       +   K  E ++ +L R +EE+E   +  E    E
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299

Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
           ++ L+  L+  +   +E    +E+L+S  E+L +    L    +ELE   E+++ L  + 
Sbjct: 300 IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLL 359

Query: 618 TDGAEELQEKLDYMEN---KFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
            +  +EL+E+L+ +E    K  E     E  + E +  +++L A LE  + E  +   + 
Sbjct: 360 EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL 419

Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM-------KEDRKTKEKDIAELK 727
           + L++E++ L   +   ++ I  L++K     +            +E  +  EK++ EL 
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 728 TKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDR-------LKAVQ 780
               E  ++    E +       I+ +E + R  +    +LL++ E         L+ ++
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539

Query: 781 DELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM 840
           + L E++  + K  L+       +  +QLED++  LK EL +   ++R  + +L +  E 
Sbjct: 540 NLLEELEELKEKLQLQ----QLKEELRQLEDRLQELK-ELLEELRLLRTRKEELEELRER 594

Query: 841 INNLKAQMEKSQQQQQQQRSPLKGLE 866
           +  LK ++++ +++  Q    L+ LE
Sbjct: 595 LKELKKKLKELEERLSQLEELLQSLE 620

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 72.8 bits (179), Expect = 7e-13
 Identities = 54/272 (19%), Positives = 129/272 (47%), Gaps = 21/272 (7%)

Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
           +    ++ +L  R+E ++R  +  +   E++ +++ LDE  +E  + + +I ++  E+E+
Sbjct: 670 RSEPAELQRLRERLEGLKR--ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727

Query: 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL--- 645
           L +E   L  R  ELE +L   +  I       +EL+ +++ +E    +       L   
Sbjct: 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787

Query: 646 ------------MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693
                       +S+ E  +S+++A L     + N+   +++ L+KEI+ L    +D  +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753
            I  ++ +I         ++E+ +  E  + +L+++  +L ++  +LEA     L  ++ 
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ----LRELER 903

Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
              +  +    + K L   + +L+A+++EL+E
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 72.0 bits (177), Expect = 1e-12
 Identities = 78/354 (22%), Positives = 151/354 (42%), Gaps = 56/354 (15%)

Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV----AQLSR 540
           +I+ L++++ ELE K   L +   ++  +L+EL  E   L  + +EL  ++      L+R
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 541 RVEEMERGAQT--------ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
              E+E+  +              E++ L+  L+EA+EE  E   EIE+L +++E+L EE
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 593 RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
            + L     EL  EL   +   A   +  E L+ ++              ER + + E  
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAAT-----------ERRLEDLEEQ 846

Query: 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
           I +L  D+ES  AE  +     + L+ E++   +LL ++      L     + E+    +
Sbjct: 847 IEELSEDIESLAAEIEELEELIEELESELE---ALLNERASLEEALALLRSELEE----L 899

Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
            E+ +  E   +EL+ + EEL +++ +LE   +     I N           QE+L + Y
Sbjct: 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN----------LQERLSEEY 949

Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV 826
              L+             L+  +E           +   ++  L+ ++++   V
Sbjct: 950 SLTLEEA---------EALENKIEDDEE-------EARRRLKRLENKIKELGPV 987

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 71.6 bits (176), Expect = 1e-12
 Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 31/311 (9%)

Query: 405 REEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE-------------DLERQRKFYKTQ 451
           R E  E++E   ++ EE+  + E  + +LR++ EE             +L RQ    +  
Sbjct: 676 RREIEELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 452 IETLMTLVKNQQAEDDSEDETLNES-AIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
           +  L   V+  +       + L E  A   + + +++  ++EL+E EA+ + L  + E +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-----GAQTENKPEEVKYLKSLL 565
             +LK L     +L  +   L  + A L  R+E +ER       + E+  E+++ L   +
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQ 625
           +    E +E    IE+L SE+E L  ER  L    A L  ELE+    +        EL+
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKAD----------LESNRAESNQSAHDEQ 675
            +L+ +  K  +  L  E L    +NL  +L  +          LE+   +  + A    
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974

Query: 676 A-LQKEIKNLG 685
             L+ +IK LG
Sbjct: 975 KRLENKIKELG 985

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 69.7 bits (171), Expect = 5e-12
 Identities = 61/275 (22%), Positives = 135/275 (49%), Gaps = 35/275 (12%)

Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
           +++ LK+ELS L+++ + +    +++S +L + +R+  ++  + ++LE +  +L  R+EE
Sbjct: 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741

Query: 545 MERGAQT-----ENKPEEVKYLKSLLD---EAKEEFKEQTTEIE---------QLRSEVE 587
           +E    +     EN   E+K L++ ++   E   + +E   ++E         ++++E+ 
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS 801

Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
           KL EE   +  R  E+E +L +            +ELQE+   ++ + +      E L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
           +KE L  +L+                   L+  +++L S L D  K   +L+A++ + E+
Sbjct: 862 KKEELEEELEE------------------LEAALRDLESRLGDLKKERDELEAQLRELER 903

Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742
               ++   + K K ++ELK K E L ++++++E 
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.7 bits (171), Expect = 6e-12
 Identities = 69/309 (22%), Positives = 137/309 (44%), Gaps = 19/309 (6%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKM------FEEQQTDWENNVKKL 433
             +R LE  L   +  + ++   ++ EE   ++E+  ++       E++  + ++ +++L
Sbjct: 220 AELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL 279

Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQEL 493
           RE+ EE  E   +  +   E    +   ++  ++ E+E         + K KI+ LK+EL
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTEN 553
            E E   + L +   ++    +EL  +   L    +ELE     L  R E  E  A+   
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSAL---LEELEELFEAL--REELAELEAELAE 394

Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
              E++ LK  ++  +E  +  +  +E L+ E+++L  E   L     EL  ELE+    
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE---- 450

Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
                +  EEL+++L  +E +  E     +RL  E  +L ++L   LE+ +  S      
Sbjct: 451 ---LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR-LEAEQRASQGVRAV 506

Query: 674 EQALQKEIK 682
            +AL+  + 
Sbjct: 507 LEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 69.3 bits (170), Expect = 6e-12
 Identities = 97/452 (21%), Positives = 184/452 (40%), Gaps = 81/452 (17%)

Query: 383 RLLEARLAEFEGFD-KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDL 441
           R +   +A    FD KKE   +  EE  E  E    + +E++      +++LR +  E  
Sbjct: 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKR----QQLERLRRE-REKA 210

Query: 442 ERQRKFYKTQIETLMT-LVKNQQAEDDSEDETLNE-SAIEAQHKLKIQNLKQELSELEAK 499
           ER +   K + E     L+K ++A +  ++    + +++E +    ++ L +E+SELE +
Sbjct: 211 ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE----LEKLTEEISELEKR 266

Query: 500 YKSLSEEHEDMSGKLKELTR-ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
            + + +  E+++ K+K+L   E   +  K  ELE ++A L R + E ER  +        
Sbjct: 267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-------- 318

Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
                   +A+E   +   EI++L +E+E+L  E      R  +L  E  +         
Sbjct: 319 --------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------- 363

Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
           +  E+L+ +L+ ++ +F E     + L   +E  + +LK ++                L+
Sbjct: 364 EELEDLRAELEEVDKEFAE---TRDELKDYREK-LEKLKREINE--------------LK 405

Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
           +E+  L   L    + + DL A I                 E  I EL+ + E+   ++ 
Sbjct: 406 RELDRLQEELQRLSEELADLNAAI--------------AGIEAKINELEEEKEDKALEIK 451

Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798
           K E      L  +    +      ++ ++     E  L  +Q ELAE          EA 
Sbjct: 452 KQEWK----LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE---------AEAQ 498

Query: 799 AATPSQYRKQLEDQVNSLKAELEQRHNVVRDL 830
           A    +  +        LKA ++  H  V  L
Sbjct: 499 ARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 67.0 bits (164), Expect = 4e-11
 Identities = 75/364 (20%), Positives = 163/364 (44%), Gaps = 51/364 (14%)

Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
           E  RE  +L  K +ELE K+A+L + + E+ +  + E   EE++ L+  L+E   +    
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRK--ELEELEEELEQLRKELEELSRQISAL 731

Query: 576 TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKF 635
             ++ +L +EVE+L E    L+    ELE E+E+ +       +  EE +E+L   E + 
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE-------ERLEEAEEELAEAEAEI 784

Query: 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI 695
           +E     E+L  E + L   L                    L+ E+  L     +  + +
Sbjct: 785 EELEAQIEQLKEELKALREALDE------------------LRAELTLLNEEAANLRERL 826

Query: 696 GDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755
             L+ +I   E+    ++E  +   +DI  L  + EEL + + +LE++ ++ LN   ++E
Sbjct: 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886

Query: 756 NDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNS 815
                 +   E+L     + L+ ++ + +E++                +  ++L +++  
Sbjct: 887 EALALLRSELEEL----SEELRELESKRSELR----------------RELEELREKLAQ 926

Query: 816 LKAELEQRHNVVRDLQLKLLQKG----EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
           L+  LE     + +LQ +L ++     E    L+ ++E  +++ +++   L+    ++  
Sbjct: 927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986

Query: 872 INID 875
           +N+ 
Sbjct: 987 VNLA 990

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 6e-11
 Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 32/314 (10%)

Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ-RDYLIAVKTDGAEE 623
           L+  +E  +     +E+L  ++EKL  +      R  EL+ EL +    L+  K     +
Sbjct: 181 LERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKLKELRK 239

Query: 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKN 683
             E+L+   ++ +EE    +  + E E  I +LK++LE  R E  +   +   L++EI+ 
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299

Query: 684 LGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEAD 743
           L   +    + + +L+ ++ + E+    +KE  +  ++++ E +T  EEL Q + +LE  
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE- 358

Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS 803
                   + +E    +     E+L +   + L  ++ ELAE                  
Sbjct: 359 ------AKEELEEKLSALLEELEELFEALREELAELEAELAE------------------ 394

Query: 804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLK 863
                + +++  LK E+E     +  L  +L    E +  L+A++E+ Q + ++    L+
Sbjct: 395 -----IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 864 GLENQMAKINIDRS 877
            LE Q+ ++     
Sbjct: 450 ELEEQLEELRDRLK 463

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 1e-10
 Identities = 60/304 (19%), Positives = 134/304 (44%), Gaps = 15/304 (4%)

Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE---YELEQRDYLIAVKT 618
           K      K E KE   E+ +L +++EKL EE + L      LE    EL ++   +  + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
           +  +     L+    + Q      E  + E E  + +L+  LE    E          L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
           +EI+ L        + + +L+ ++ + E+    ++ + ++ E+    L+ + EEL +++ 
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY---EDRLKAVQDELAEMKCAQLKPSL 795
           +LE         ++ +E +    K   E+L       ED LK +++E  E++  +L+  L
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE-EELR-EL 896

Query: 796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQ 855
           E+          +L++++  L+  LE+    +  L+++L +  E +        +++ ++
Sbjct: 897 ESE-------LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Query: 856 QQQR 859
           + +R
Sbjct: 950 EIER 953

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 1e-10
 Identities = 111/515 (21%), Positives = 218/515 (42%), Gaps = 37/515 (7%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
           E +  LE  L E +    +E E +I EE +   E+ R+  EE Q +    +K+  E+ E 
Sbjct: 246 EELSRLEEELEELQEE-LEEAEKEI-EELKSELEELREELEELQEEL-LELKEEIEELEG 302

Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
           ++   R       E L  L    +  ++  +E   +     +   + + L +EL +L A+
Sbjct: 303 EISLLR-------ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 500 YKSLSEEHEDM-SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-----GAQTEN 553
            +   EE E+  S  L+EL      L  +  ELE ++A++   +EE++R       + E 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
             E ++ LK  L E + E +E  TE+E+L  E+E+L E+   L  R  ELE EL +    
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
           +         L+ +LD +E + +    V   L + +  L        E  + +       
Sbjct: 476 LQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEK----Y 531

Query: 674 EQALQKEIKN-LGSLLVDKDKTIGDLKAKIHKYEKYYAV------MKEDRKTKEKDIAEL 726
           E AL+  + N L +++V+ ++        + + +   A       +K  R  K       
Sbjct: 532 ETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGF 591

Query: 727 KTKCEELTQQVTKLEADCQSYLNTI---KNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
                +L     K E   +  L       ++E   R  +  + K       R+  +  +L
Sbjct: 592 LGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKY------RIVTLDGDL 645

Query: 784 AEMKCAQLKPSLEASAATPSQYR-KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN 842
            E   +    S    ++   +   K+LE+++  L+A+LE+    ++ L+ +L    +++ 
Sbjct: 646 VEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE 705

Query: 843 NLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
            L+ Q+E+ ++Q ++ +  L  LE ++ ++     
Sbjct: 706 ELRRQLEELERQLEELKRELAALEEELEQLQSRLE 740

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.5 bits (160), Expect = 1e-10
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 30/303 (9%)

Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
           L++  L   L EL  + + L EE ++   +L+ELT E        +ELE K+ +L   V 
Sbjct: 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVS 277

Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
           E+E   +   K  E+  L + +   +++ +     +  L  ++E+L  +   L  +  EL
Sbjct: 278 ELEEEIEELQK--ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335

Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
             EL + +  +       EEL+E+L+ +E + +E     E  + E E+ + +L+  LE+ 
Sbjct: 336 AEELAELEEKL-------EELKEELESLEAELEEL----EAELEELESRLEELEEQLETL 384

Query: 664 RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
           R++  Q      +L  EI+ L + L   +     L+ +I          +  +K +E ++
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE---------ELLKKLEEAEL 435

Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
            EL+ + EEL +++ +L+      L        +E           +    +L+A  D L
Sbjct: 436 KELQAELEELEEELEELQE-ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

Query: 784 AEM 786
             +
Sbjct: 495 ERL 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
           E+ + V D K++   P KD + +   +   + F +++ P++TQ ++++     ++E  L 
Sbjct: 20  ESCITVDDNKTVTLTPPKDGRKAGPKS---FTFDHVFDPNSTQEDVYETTAKPLVESVLE 76

Query: 135 GEDALLFSFGTTNSGKTFTI 154
           G +  +F++G T SGKT+T+
Sbjct: 77  GYNGTIFAYGQTGSGKTYTM 96

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 92/433 (21%), Positives = 177/433 (40%), Gaps = 55/433 (12%)

Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQ 444
           +EAR  E E  D+ E   ++R+   E +    +   E+      +   L E+ EE  E  
Sbjct: 312 VEARREELE--DRDE---ELRDRLEECRVAA-QAHNEEAESLREDADDLEERAEELREEA 365

Query: 445 RKFYKTQIETLMTLVK--NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
            +      E    +     +  E + E E L E         +  +   +L   E   + 
Sbjct: 366 AELESELEEAREAVEDRREEIEELEEEIEELRE---------RFGDAPVDLGNAEDFLEE 416

Query: 503 LSEEHEDMSGKLKELT---RENRDLVTKNKEL--EGKVAQLSRRVEEMERGAQTENKPEE 557
           L EE +++  +  EL    R  R+ V + + L   GK  +  + VE        E   E 
Sbjct: 417 LREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRER 476

Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
           V+ L++ L++ +EE +E    +E+    VE      RL   R   LE  + +R   I  K
Sbjct: 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRED-LEELIAERRETIEEK 535

Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQS------- 670
            + AEEL+E+   +E + +E+         E E    ++ A+L S  AE  +        
Sbjct: 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESLERI 594

Query: 671 ----------AHDEQALQKEIKNLGSL-------LVDKDKTIGDLKAKIHKYEKYYAVMK 713
                       + + L+++ + L  L       L +K +   +L+A+    E      +
Sbjct: 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAR 652

Query: 714 EDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYE 773
           ED++  E+ + +++ K +EL ++   L+A+  +  N ++ +E      +  + ++     
Sbjct: 653 EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV----- 707

Query: 774 DRLKAVQDELAEM 786
           + L+A+ DE  E+
Sbjct: 708 EALEALYDEAEEL 720

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 4e-10
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 24/228 (10%)

Query: 385 LEARLAEFEGFDKKEFEY--QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLE 442
           L+  + E E   +   E   ++ EE  E +       E +    E   ++L ++ EE LE
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDA-LERELESLEQRRERLEQEIEE-LE 834

Query: 443 RQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
            + +  + +++ L   ++  + E +   E L E       + + + L+ EL ELE + + 
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEE------LEAEKEELEDELKELEEEKEE 888

Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP------- 555
           L EE  ++  +L EL  E   L  + +ELE K+ +L   + E+E   + E +        
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Query: 556 EEVKYLKSLLDE-------AKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
            E++ L+  ++        A EE++E     E+L+S+ E L E +  L
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 63.2 bits (154), Expect = 5e-10
 Identities = 100/471 (21%), Positives = 220/471 (46%), Gaps = 46/471 (9%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
           + I  LE ++ E +   +K  EY    E+ E   D  +  E++ +  E  +  + E+ +E
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332

Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
             E++ +  +          K +  E +   E L E     +   + +  K+EL  L+ +
Sbjct: 333 LEEKEERLEEL---------KKKLKELEKRLEELEERHELYE---EAKAKKEELERLKKR 380

Query: 500 YKSLS-----EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
              L+     +E E++    +E+  E   +  +  EL+ ++ +L + +EE++     + K
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-----KAK 435

Query: 555 PEEVKYLKSLLDEAKEEFKEQ-TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
            +     + L +E ++E  E+ T E++++  E++++ E+ R L     ELE  L++   L
Sbjct: 436 GKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495

Query: 614 IAVKT--DGAEELQEKLD-YMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAES 667
           I +K   +  +EL+EKL  Y   + ++++  YE+L  +   L   I  LK +LE      
Sbjct: 496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK 555

Query: 668 NQSAHDEQALQKEIKNLGSLLVDKD----KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
            + A  E+ L +  + L  LL + +    +++ +L+ ++ + E +Y    E  K  EK++
Sbjct: 556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE-LKDAEKEL 614

Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMEN--DERSTKHNQEKLLKIYEDRLKAVQD 781
              + + ++L +++ K   +       ++ +    +E   K+++E+  ++ E+ L+ +  
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE-LSR 673

Query: 782 ELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
           ELA          L A      + R++++  +  LK ELE+R    ++L+ 
Sbjct: 674 ELA---------GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 75/355 (21%), Positives = 157/355 (44%), Gaps = 39/355 (10%)

Query: 516 ELTRENRDLVTKN-KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
           E TREN D +     ELE ++  L R+ E+ ER  + + +  E++    +L       +E
Sbjct: 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR-----LEE 236

Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
              E+E+L+ E+++  EE   LT    ELE +LE+    ++   +  EELQ++L      
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----- 291

Query: 635 FQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKT 694
                           N IS+L+   +  R          + L+ +++ L S L +  + 
Sbjct: 292 -------------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 695 IGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754
           + +L+ K+ + ++    ++ + +  E ++ EL+++ EEL +Q+  L +     +  ++  
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK----VAQLELQ 394

Query: 755 ENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
                +     E  L+  EDR + +Q E+ E+     +  L+   A           ++ 
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA-----------ELE 443

Query: 815 SLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
            L+ ELE+    +  L+  L +  E +   +  ++ ++++  Q ++ L  LE   
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.8 bits (153), Expect = 8e-10
 Identities = 71/393 (18%), Positives = 163/393 (41%), Gaps = 59/393 (15%)

Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN------RDLVTKNKELEG 533
           A+   K +   +EL E+E   + L    ++   +L+ L RE       + L+ + +E EG
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225

Query: 534 KVAQLSRRVEEMERG-----AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
               L +  E +ER       Q  +  EE++ L   + E ++  +E    +E+L  +++ 
Sbjct: 226 YE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283

Query: 589 LSEERRL-LTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
           L EE +L +  +  ELE E+   +  IA K    E+ +E+L                   
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL------------------- 324

Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
                 ++L+A+++   AE  +   + +  +K    L     +  + + DL+A++ + +K
Sbjct: 325 ------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378

Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
            +A  +++ K   + + +LK +  EL +++ +L+ + Q     + ++       +    +
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438

Query: 768 LLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVV 827
           L    E+  +    E+ + +                   +QL   ++  + EL       
Sbjct: 439 L----EEEKEDKALEIKKQE----------------WKLEQLAADLSKYEQELYDLKEEY 478

Query: 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRS 860
             ++ +L +    +   +AQ   S+++ +  R+
Sbjct: 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRA 511

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 9e-10
 Identities = 66/343 (19%), Positives = 157/343 (45%), Gaps = 40/343 (11%)

Query: 552 ENKPEEVKYLKSLLDEA----------KEEFK--EQTTE--------IEQLRSEVEKLSE 591
           E KPEE    +++ +EA          KE  +  E+T E        + +L  +++ L  
Sbjct: 151 EAKPEE---RRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLER 207

Query: 592 ERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKEN 651
           +      R  EL+ EL + +  +A+     EEL+E+L+    + QEE    E  + E   
Sbjct: 208 QAEK-AERYKELKAELRELE--LALLVLRLEELREELE----ELQEELKEAEEELEELTA 260

Query: 652 LISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
            + +L+  LE  R E ++   + + LQKE+  L + +   ++    L+ ++   E+    
Sbjct: 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320

Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKI 771
           ++   +  E  + EL  +  EL +++ +L+ + +S    ++ +E +        E  L+ 
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE----ELESRLEE 376

Query: 772 YEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQ 831
            E++L+ ++ ++     AQL+  + +      +   +LE   +  +   ++   +++ L+
Sbjct: 377 LEEQLETLRSKV-----AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431

Query: 832 LKLLQKGEM-INNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
              L++ +  +  L+ ++E+ Q++ ++    L+ L  ++ +  
Sbjct: 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 111/502 (22%), Positives = 243/502 (48%), Gaps = 54/502 (10%)

Query: 404 IREEYREVQEDFRKM--FEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN 461
           + +E +E++E   ++   E++    E + +KL E+  E LE + +  K +IE L   VK 
Sbjct: 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE-LEERIEELKKEIEELEEKVKE 284

Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE---EHEDMSGKLKELT 518
            +   +  +E +  S    ++  +++ +++ LS LE +   + E   E E+   +L+EL 
Sbjct: 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344

Query: 519 RENRDLVTKNKELEGKVAQLSR---RVEEMER--GAQTENKPEEVKYLKSLLDEAKEEFK 573
           ++ ++L  + +ELE +         + EE+ER     T   PE+++     L++AKEE +
Sbjct: 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404

Query: 574 EQTTEIEQLRSEVEKLSEERR--LLTVRSAEL-------EYELEQRDYLIAVKT----DG 620
           E+ ++I     E++K  +E +  +  ++ A+        E   E R  L+   T      
Sbjct: 405 EEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRI 464

Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
            +EL+E ++  E K ++E    E+++ ++  LI   +   +    E     ++ + L+K+
Sbjct: 465 EKELKE-IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523

Query: 681 IKNLGSLLVDKDKTIGDLKA------KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
            +    L     K  G++K+      K+ + +K  A +++     E+++AEL  + EEL 
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583

Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL--AEMKCAQLK 792
               +   + +  L  ++   N+    K + EK L+  E  LK +++EL  A  + A+ +
Sbjct: 584 ---FESVEELEERLKELEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELAETE 639

Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV--VRDLQLKLLQKGEMINNLKAQMEK 850
             LE       + RK+LE        ELE++++     +L+ + L+    +  L+A++E+
Sbjct: 640 KRLE-------ELRKELE--------ELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684

Query: 851 SQQQQQQQRSPLKGLENQMAKI 872
            ++++++ +  L+ L+ ++ + 
Sbjct: 685 LEKRREEIKKTLEKLKEELEER 706

Length = 880

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 58.9 bits (143), Expect = 9e-09
 Identities = 110/508 (21%), Positives = 233/508 (45%), Gaps = 61/508 (12%)

Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
           + +FE +      E++E  +K+  ++ ++ E   +    + +  LE+ +   ++++E L 
Sbjct: 305 RSKFESEGALRAEELEELKKKL-NQKISELEEAAEAANAKCDS-LEKTKSRLQSELEDLQ 362

Query: 457 TLVKNQQA---EDDSEDETLNESAIEAQHKL-----KIQNLKQELSELEAKYKSLSEEHE 508
             ++   A   E + + +  ++   E + K+     ++   ++E   L  +   L  E E
Sbjct: 363 IELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELE 422

Query: 509 DMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG-AQTENKPEEVKYLKSLLDE 567
           ++  +++ L REN++L  +  +L  ++ +  R V E+E+   + E + +E   L++ L+E
Sbjct: 423 ELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDE---LQAALEE 479

Query: 568 AK-----EEFKEQTTEIE--QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG 620
           A+     EE K    ++E  Q+RSE+E+          R AE E E E            
Sbjct: 480 AEAALELEESKVLRAQVELSQIRSEIER----------RLAEKEEEFENTR---KNHQRA 526

Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE-SNRAESNQSAHDEQALQK 679
            E LQ  L+  E K + E+    RL  + E  I++L+  L+ +N+A +    +  +  Q+
Sbjct: 527 IESLQATLE-AEAKGKAEAS---RLKKKLEGDINELEIALDHANKANAEAQKNV-KKYQQ 581

Query: 680 EIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED--------------RKTKEKDIAE 725
           ++K L + + ++ +   D + ++   E+    ++ +              RK  E ++AE
Sbjct: 582 QVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAE 641

Query: 726 LKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
              +  ELT Q + L A  +     +  +++D     +     LK  E+R K  Q + A 
Sbjct: 642 ASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNE----LKAAEERAKKAQADAAR 697

Query: 786 MKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM-INNL 844
           +   +L+   E S       RKQLE QV  L+  L++          K++QK E  +  L
Sbjct: 698 L-AEELRQEQEHSQHLER-LRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVREL 755

Query: 845 KAQMEKSQQQQQQQRSPLKGLENQMAKI 872
           +A+++  Q++  + +  L+ +E ++ ++
Sbjct: 756 EAELDGEQRRHAETQKNLRKMERRVKEL 783

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.6 bits (137), Expect = 5e-08
 Identities = 63/287 (21%), Positives = 135/287 (47%), Gaps = 18/287 (6%)

Query: 592 ERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESL---VYERLMSE 648
            R  +    +E       R+ L  +K +    LQ +L  +EN+  E S       R + E
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRE-LSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY 708
            E  I QL+ + E  +    +   D  +L++EI+N+ S L + +  I +L+  +HK E+ 
Sbjct: 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE- 779

Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYLNTIKNMENDERSTKHNQ 765
            A+   + +     I E++ +  +L ++V+++EA   + +  LN +   +          
Sbjct: 780 -ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838

Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHN 825
           ++     ++++K+++ E+  +     K  LE          + LE ++  LK E ++   
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGK--KEELEEELEELEAALRDLESRLGDLKKERDELEA 896

Query: 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
            +R+L+ K       I  L+AQ+EK +++  + ++ L+ LE ++++I
Sbjct: 897 QLRELERK-------IEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 55.4 bits (133), Expect = 8e-08
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 13/212 (6%)

Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
            Q ++   +++ L++ L  A+ E +   TE E  RSE++K  +ER  +    A     L 
Sbjct: 74  FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133

Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRA 665
           +    +A  T  A++LQ +L  +  + ++     + L + ++ L    +QLK+ +   + 
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193

Query: 666 ESNQSAHDEQALQ----------KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
            S Q   + Q L           +E+    +      + I    A+I +  +  A   E 
Sbjct: 194 RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253

Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSY 747
            + +E+ +  L+T    L Q+V +LEA  Q+Y
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAY 285

Length = 499

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 9e-08
 Identities = 101/491 (20%), Positives = 195/491 (39%), Gaps = 58/491 (11%)

Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE-----------DLERQRKFYKTQIET 454
           EEYRE   D R   E   +D   ++ +L+ Q EE            LE +      +IE 
Sbjct: 165 EEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIER 224

Query: 455 LMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKL 514
                +  +   D  DE L E     + + +++ L+ E+ +L         E E+++ ++
Sbjct: 225 YEEQREQARETRDEADEVLEE---HEERREELETLEAEIEDLRETIAETEREREELAEEV 281

Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEME-RGAQTENKPEEVKYLKSLLDEAKEEFK 573
           ++L     +L  +  +L  +        E +E R  + E++ EE   L+  L+E +   +
Sbjct: 282 RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE---LRDRLEECRVAAQ 338

Query: 574 EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
               E E LR + + L E    L   +AELE ELE+    +  + +  EEL+E+++ +  
Sbjct: 339 AHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398

Query: 634 KFQEESLVYERLMSEKENLISQLK------ADLESNRAESNQSAHDEQALQKEIKN---- 683
           +F +  +         E L  +        A+LE+    + +   + +AL +  K     
Sbjct: 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG 458

Query: 684 ---LGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740
               GS  V+   TI + + ++ + E     ++E+ +  E+ +   +    E   ++ +L
Sbjct: 459 QPVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERL 514

Query: 741 EADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQ-----DEL---AEMKCAQLK 792
           E             E  E   +   E+   I E R +A +      EL   AE K     
Sbjct: 515 E-------------ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561

Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
            + E +     +   +L  ++  LK  +E     +R L   +    + I  L+ + E   
Sbjct: 562 EAEEEAEEAREEV-AELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREKREALA 619

Query: 853 QQQQQQRSPLK 863
           +   ++R  L 
Sbjct: 620 ELNDERRERLA 630

Length = 880

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F  ++ P  TQ  +++     ++E  L G +  +F++G T SGKT+T++
Sbjct: 42  FTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTME 92

Length = 326

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 2e-07
 Identities = 65/358 (18%), Positives = 149/358 (41%), Gaps = 43/358 (12%)

Query: 515 KELTRENRDLVTKN-KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK 573
           KE   E  + V +N + L+  + +  +++E + R      K E  + L     E   E  
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRR---EREKAERYQALLKEKREY--EGY 226

Query: 574 EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
           E   E E L  + E +  +        A LE ELE+            EE+ E    +E 
Sbjct: 227 ELLKEKEALERQKEAIERQL-------ASLEEELEKLT----------EEISELEKRLEE 269

Query: 634 KFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693
             Q    + +++    E    ++K  +                L+ EI +L   + +K++
Sbjct: 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGE--------------LEAEIASLERSIAEKER 315

Query: 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753
            + D + ++ K E     +  + +  E++I E + + ++LT++  +L+ + +     ++ 
Sbjct: 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375

Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQV 813
           ++ +   T+      LK Y ++L+ ++ E+ E+K    +  L+      S+    L   +
Sbjct: 376 VDKEFAETRDE----LKDYREKLEKLKREINELKRELDR--LQEELQRLSEELADLNAAI 429

Query: 814 NSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
             ++A++ +      D  L++ ++   +  L A + K +Q+    +     +E +++K
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 27/324 (8%)

Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP-----EEVKYLKSLLDEA 568
           L+   RE  DL+ K   LEG V+ +  R+E++E   +   +      E+ K  +S  +  
Sbjct: 145 LEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESM 204

Query: 569 KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKL 628
             E      +  + +  + +L ++ + LT +  E +  LE    + A       EL+++L
Sbjct: 205 SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRL 264

Query: 629 DYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLL 688
             M  + ++E      L  E E    QL  DL + +     S      L +E+ +LGSL 
Sbjct: 265 KKMTIQRRDEETERIDLQLENE----QLHEDLRTLQERLESSQQKAGLLGEELASLGSL- 319

Query: 689 VDKDKTIGDL-KAKIHKYEKYYAV------MKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
             +D TI +L ++++   +    +      +KE +    ++   L+   E    ++ KL 
Sbjct: 320 --RDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLS 377

Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
           A+       ++    +ERS +   E  L I +D    VQ      + ++L+ +L      
Sbjct: 378 AELLKLEEWLQ----EERSQREKLEVELGIEKD-CNRVQLSENRRELSELRSALRVLQKE 432

Query: 802 PSQY---RKQLEDQVNSLKAELEQ 822
             Q    +++L D +  L+  L++
Sbjct: 433 KEQLQEEKQELLDYIRVLELRLDK 456

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 59/285 (20%), Positives = 134/285 (47%), Gaps = 19/285 (6%)

Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
           DD E+   N   +  + K +I+ L++ +   E   + + E+ +++   L+E+     ++ 
Sbjct: 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEIS 213

Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
           ++  EL  ++ +L + V+E+E   + + + EE++     L+ +K + +E+  E+E+   E
Sbjct: 214 SELPELREELEKLEKEVKELE---ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270

Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
           ++K  EE         EL+ + E+   L     +  +EL+E ++   ++ +EE    E  
Sbjct: 271 LKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEER 329

Query: 646 MSEKENL------ISQLKADLESNRAESNQSA---HDEQALQKEIKNLGSLLVDKDKTIG 696
           + E E        + +   +LE    E  +      + +A ++E++ L   L     T  
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL--TGLTPE 387

Query: 697 DLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
            L+ ++ + EK    ++E+       I ELK + +EL + + +L+
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432

Length = 880

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 53.9 bits (129), Expect = 4e-07
 Identities = 81/461 (17%), Positives = 191/461 (41%), Gaps = 64/461 (13%)

Query: 422 QQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA- 480
           Q  DW ++  K   Q  + L +  K   + +E     + N+    + +  +  +   +  
Sbjct: 574 QLEDWLHSKSKEINQTRDRLAKLNKELAS-LEQNKNHINNELESKEEQLSSYEDKLFDVC 632

Query: 481 ---QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRD---LVTKNKELEGK 534
                +  ++ LK+E+ +   +   L+      S  + +LT EN+    +  +  + E +
Sbjct: 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE 692

Query: 535 VAQLSRRVEEMERGAQTENKP--EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
           + +    ++   R A  + K    E+K  +   DE       + + I+    E+ +L  +
Sbjct: 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNK 752

Query: 593 RRLLTVRSAELEYELEQRDYL---IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
            + +      L+ ++E+++ L   I  + + A+     +  ME +FQ E    ER   + 
Sbjct: 753 LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME-RFQMELKDVER---KI 808

Query: 650 ENLISQLKA-DLESNRAESNQSAHDEQ----ALQKEIKNLGSLLVDKDKTIGDLKAKIHK 704
               ++L+  DL+    + NQ   ++Q     +  +I+    L+ D+ + I  LK+K ++
Sbjct: 809 AQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868

Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
                       K+++  I     + ++  +Q+ +L  + QS +  IK+ +  +   +  
Sbjct: 869 L-----------KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917

Query: 765 QEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRH 824
            EK  +  E+ + + +                          K+ +D+VN +K +++  H
Sbjct: 918 LEKDQQEKEELISSKETS-----------------------NKKAQDKVNDIKEKVKNIH 954

Query: 825 NVVRDLQLK--------LLQKGEMINNLKAQMEKSQQQQQQ 857
             ++D++ K        L QK   +N + AQ+E+ ++ Q++
Sbjct: 955 GYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEK 995

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 53.8 bits (130), Expect = 4e-07
 Identities = 68/356 (19%), Positives = 136/356 (38%), Gaps = 52/356 (14%)

Query: 433 LREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSED-----ETLN--ESAIEAQHKLK 485
           L+   +E LE   +     IE L   + N++            E L+   S +   + L+
Sbjct: 14  LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73

Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
            +  K  +  LE   K + EE E +  ++KEL  E  +L  + KELE ++          
Sbjct: 74  EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI---------- 123

Query: 546 ERGAQTENKPEEVKYLKSL-LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
                     E ++   +  LD +     +  +       E +KL E +    V + E  
Sbjct: 124 ----------ERLEPWGNFDLDLSLLLGFKYVSVFVGTVPE-DKLEELKLESDVENVEYI 172

Query: 605 YELEQRDYLIAV-----KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659
              +   Y++ V       +  EEL+ KL +   + +EE    E +  E +  + +++ +
Sbjct: 173 STDKGYVYVVVVVLKELSDEVEEELK-KLGFERLELEEEGTPSELI-REIKEELEEIEKE 230

Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
            ES   E  + A         +     + +++     +  +K  K +K +A+   +    
Sbjct: 231 RESLLEELKELAKKYLEELLALYEYLEIELER----AEALSKFLKTDKTFAI---EGWVP 283

Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIK-NMENDERSTKHNQEKLLKIYED 774
           E  + +LK   ++ T           +Y+  ++ + E +E  TK    K +K +E 
Sbjct: 284 EDRVKKLKELIDKAT--------GGSAYVEFVEPDEEEEEVPTKLKNPKFIKPFES 331

Length = 646

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 5e-07
 Identities = 47/229 (20%), Positives = 115/229 (50%), Gaps = 18/229 (7%)

Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNL-GSLLVDKDKTIGDLKAKIHKYEKY 708
           E+++++L+  L+S   ++ + A   + L+ E++ L  +LLV +   + +L+ ++ + ++ 
Sbjct: 192 EDILNELERQLKSLERQA-EKAERYKELKAELRELELALLVLR---LEELREELEELQEE 247

Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
               +E+ +    ++ EL+ K EEL  +V++LE +    +  ++       +     E+ 
Sbjct: 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEE----IEELQKELYALANEISRLEQQ 303

Query: 769 LKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVR 828
            +I  +RL  ++ +L E         LEA          +L +++  L+ +LE+    + 
Sbjct: 304 KQILRERLANLERQLEE---------LEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 829 DLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
            L+ +L +    +  L++++E+ ++Q +  RS +  LE Q+A +N +  
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 53.5 bits (129), Expect = 5e-07
 Identities = 106/485 (21%), Positives = 198/485 (40%), Gaps = 79/485 (16%)

Query: 377 DPYETIRLLEARLAEFEGF-----DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVK 431
           D +E +  LE+ LAE +       +++E   + R+E  EV E+  +  EE +T  E  ++
Sbjct: 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET-LEAEIE 261

Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQ 491
            LRE   E  ER+R       E L   V++ +   +  +E  ++   EA           
Sbjct: 262 DLRETIAET-ERER-------EELAEEVRDLRERLEELEEERDDLLAEA----------- 302

Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
            L + +A+  ++    E++  + +EL     +     +    +   L    +++E  A+ 
Sbjct: 303 GLDDADAE--AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360

Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE--- 608
               EE   L+S L+EA+E  +++  EIE+L  E+E+L E      V     E  LE   
Sbjct: 361 --LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418

Query: 609 -QRDYLIAVKTDGAEELQEKLDYMENKFQ--------------EESLVYERLMSEKENLI 653
            +RD L   + +    L+   + +E                  E S   E +  E    +
Sbjct: 419 EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI-EEDRERV 477

Query: 654 SQLKADLES------------NRAESNQSAHDE-QALQKEIKNLGSLLVDKDKTIGDLKA 700
            +L+A+LE              RAE    A D  + L++  ++L  L+ ++ +TI + + 
Sbjct: 478 EELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE 537

Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
           +               +   +  AEL+ + EE  +   + E + +     +  + +    
Sbjct: 538 RA--------------EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583

Query: 761 TKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAEL 820
            K   E L +I    L A+ D  AE +  +L+   EA A    + R++L ++    K EL
Sbjct: 584 LKERIESLERI-RTLLAAIAD--AEDEIERLREKREALAELNDERRERLAEK-RERKREL 639

Query: 821 EQRHN 825
           E   +
Sbjct: 640 EAEFD 644

Length = 880

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           Y+F   YG   TQ ++F   V  ++   L+G++A +F++G+T +GKT T+ 
Sbjct: 49  YQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTML 99

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 85/409 (20%), Positives = 189/409 (46%), Gaps = 37/409 (9%)

Query: 427 ENNVKKLREQHEEDLERQRKFYKT--QIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL 484
             N+ ++ ++ +  +ER  KF K    IE L+   + +  E   E   ++    E + +L
Sbjct: 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223

Query: 485 -KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
            K++   +EL EL+ + + L +E E + G  ++L  + R+L  + +EL+ ++ +L  +V+
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283

Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
           E++   +   +  ++        +   E +++ + +E+  + +E+  +E      R  EL
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343

Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
           + +L              +EL+++L     + +E   +YE   ++KE L  +LK  L   
Sbjct: 344 KKKL--------------KELEKRL----EELEERHELYEEAKAKKEEL-ERLKKRLTGL 384

Query: 664 RAESNQSAHDE-----QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE-DRK 717
             E  +   +E     + +++EI  + + + +  K I +LK  I + +K         R+
Sbjct: 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444

Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER---STKHNQEKLLKIYE- 773
             E+   EL    EE T ++ ++E + +      + +  + R        + +L+K+ E 
Sbjct: 445 LTEEHRKELL---EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501

Query: 774 -DRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
            ++LK ++++L +    +L+   E       +  K L+ ++ SLK ELE
Sbjct: 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK-LKGEIKSLKKELE 549

Length = 880

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 51.9 bits (124), Expect = 2e-06
 Identities = 86/474 (18%), Positives = 183/474 (38%), Gaps = 50/474 (10%)

Query: 417 KMFEEQQTDWENNVKKLREQH---EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETL 473
           K  EE +   EN   +  E+    ++ L+ +    + + E  +   K   +   ++   +
Sbjct: 117 KALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEM 176

Query: 474 NESAIEAQHKLKIQ-NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
              A  A  +LK+  +  +EL E   + +    E E     L      + D   K K LE
Sbjct: 177 QCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLE 236

Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
            ++ +  +               E VK +K  L +  E  +    E+  LR E  KL   
Sbjct: 237 EELKRYEQDA-------------EVVKSMKEQLLQIPELER----ELAALREENRKLRSM 279

Query: 593 RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
           +    +   EL  +L+ R        +   +L+ + + +EN+           +   ++L
Sbjct: 280 KEDNELLKEEL-EDLQSRLERFEKMREKLADLELEKEKLENE-----------LKSWKSL 327

Query: 653 ISQLKADLESNRAESNQSA---HDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
           +  +  +L +    S +     ++E  L+++  ++ S     + T+  L+ +  K     
Sbjct: 328 LQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEI 387

Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLL 769
             +K+  +  +  +  L+ +   +T++   L A   SY     + E  E S      K L
Sbjct: 388 LELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSY-----DKELTETSVSGQLMKRL 442

Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
           +  ED ++ VQ  LA+M         E   +   +   Q +D+ N+L+ E++     +  
Sbjct: 443 EEAEDLVQKVQSHLAKM---------ENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVS 493

Query: 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDT 883
            +  L    E  N L+ ++E  ++++ + R     LE ++  + +    +   T
Sbjct: 494 NERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRT 547

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG---KVAQLSR 540
           L IQ L  E   LE + K + +  +       EL   N+ L     ELE    +V+QL  
Sbjct: 10  LAIQKLDLEKDRLEPRIKEIRKALKKA---KAELEALNKALEALEIELEDLENQVSQLES 66

Query: 541 RVEEM-ERGAQTENKPEEVKYLKSL------LDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
            ++E+ ER  + E K   VK  + L      +  AKE       E+ +L  E+EKL +E 
Sbjct: 67  EIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126

Query: 594 RLLTVRSAELE---YELEQRDYL-IAVKTDGAEELQEKLDYMENKFQEESL-VYERLMSE 648
             L  R   LE    E E R    +A   +  +EL  K + ++ K   E L  YER+   
Sbjct: 127 EDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186

Query: 649 KENL 652
           K+ +
Sbjct: 187 KKGV 190

Length = 239

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 50.8 bits (122), Expect = 3e-06
 Identities = 65/361 (18%), Positives = 136/361 (37%), Gaps = 57/361 (15%)

Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
           EL  + +   E  +    K K+   +   LV  N ELE       ++  E E     +  
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQ---LVQANAELE------EQKRAEAEARTALKQA 654

Query: 555 PEEVKYLKSLLDEAKEEFKEQTTE-IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
             +++ L++     K++ +    E  +Q  +++ +L  + + L           +Q+ +L
Sbjct: 655 RLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQL---------LEQQQAFL 705

Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
                   E L++    +  +   +  V E  +  +   +S       +           
Sbjct: 706 --------EALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKA-RLKELK 756

Query: 674 EQALQKEIKNLG---SLLVDKDKTIGDLKAKI-------HKYEKYYAVMKED-----RKT 718
           +Q  + E+ +L    + + +  + I +L+  I        +  +Y A M+E         
Sbjct: 757 KQYDR-ELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLR 815

Query: 719 KEKD-----IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYE 773
           +E+      + EL++  EEL Q++T+L  D        K +E  ER     Q   L    
Sbjct: 816 EERPNLAIQLRELESSAEELQQELTRLIKD---TKLRRKKLE-QERKALEKQLDQLDELL 871

Query: 774 DRLKAVQDELAEMK----CAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
             L+    +LAE+K      Q + S+        +++++ +     LK  LE+   V++D
Sbjct: 872 RGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKD 931

Query: 830 L 830
            
Sbjct: 932 H 932

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
           + ++  L+QEL+EL+ +   L E+  ++  + +EL +E   L  + + L+          
Sbjct: 65  RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQ---------- 114

Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL 595
           +E+ R  Q      E   L     E +EE  E   E E L +E E+L E  + 
Sbjct: 115 KELARIKQLSANAIE---LDEENRELREELAELKQENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153
           Y F  ++GP   Q E++  +V  +L+  L G +  +F++G T +GKT+T
Sbjct: 50  YTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYT 98

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.4 bits (121), Expect = 5e-06
 Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 376 DDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWEN--NVKKL 433
           ++  E +  LEA L + E       E +  EE  E  ED  +  +  +   E   ++++L
Sbjct: 471 EEDRERVEELEAELEDLEE------EVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524

Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL-KIQNLKQE 492
             +  E +E +R     + E L       +AE + + E   E+  EA+    ++  L  +
Sbjct: 525 IAERRETIEEKR----ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580

Query: 493 LSELEAKYKSLS------EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
           L+EL+ + +SL           D   +++ L  +   L   N E   ++A+   R  E+E
Sbjct: 581 LAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640

Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
                             ++EA+E+ +     +EQ+  ++++L EER  L      +E E
Sbjct: 641 AEFDEAR-----------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689

Query: 607 LEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADL 660
           LE+            EEL+E+ + +EN+ +    +Y+    E E++   L+A+L
Sbjct: 690 LEEL-----------EELRERREALENRVEALEALYDE-AEELESMYGDLRAEL 731

Length = 880

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 50.0 bits (119), Expect = 6e-06
 Identities = 90/468 (19%), Positives = 193/468 (41%), Gaps = 39/468 (8%)

Query: 421 EQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480
           ++ ++W  +  K  +Q  +++    ++ K   ETL  + + Q  +       L       
Sbjct: 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKAL-ETLRQVRQTQGQKVQEHQMELKYLKQYK 216

Query: 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540
           +   +I++            + + + +E+    LK   +E    ++K  +L+ ++  L  
Sbjct: 217 EKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKS 276

Query: 541 RVEEMER-GAQTENKPEEV-----KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
           R ++ME+  ++ E K E+V     + L  L    +   +E+  E+   + E+EKL++ERR
Sbjct: 277 RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERR 336

Query: 595 LLTVRSAELEYELEQ--------------RDYLI-AVKTDGAEELQEKLDYMENKFQEES 639
           LL     EL  E  +              RD LI ++ T    +  E+  + E + +   
Sbjct: 337 LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFH 396

Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK----DKTI 695
            +      ++    +QL ADL+S      + A +   ++ E K LG  +  K    +K  
Sbjct: 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADE---IRDEKKGLGRTIELKKEILEKKQ 453

Query: 696 GDLKAKIHKYEKYYAVMKE--------DRKTKEKDIAELKTKCEELTQQVTKLEADCQSY 747
            +LK  I + ++                +  +E   AE  +  E L ++V  L+ + ++ 
Sbjct: 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNE-KAD 512

Query: 748 LNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS-QYR 806
           L+      + E    ++        E   K   D+  +++  + + S E ++       +
Sbjct: 513 LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK 572

Query: 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854
           KQLED ++S   E+ Q  + +  L  +L    +  N++  ++E  ++Q
Sbjct: 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 50.0 bits (119), Expect = 6e-06
 Identities = 100/491 (20%), Positives = 187/491 (38%), Gaps = 42/491 (8%)

Query: 404 IREEYREVQEDFRKMFEEQQTDWE-----NNVKKLREQHEEDLERQRKFYKTQIETLMTL 458
            +E+ R  QE+ +      Q   E       + +L+++ E+      +    Q+E     
Sbjct: 58  WKEQLRVTQEENQHAQLTVQALQEELKSQRELNRLQQKLEKSGNETGELQ--QLEKSEGQ 115

Query: 459 VKNQQAEDD---SEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
               QAE +    E   L ++  + Q  L+++ L+Q L   + + K L E  +      K
Sbjct: 116 FSRIQAERERQAMELFLLRDTLEKLQ--LRMERLQQTLDARDEEIKKLLEMLQSKGLSAK 173

Query: 516 ELT---------RENRDLVTKNKE-LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLL 565
                       RE  D  +  +  LE K  +     EE+ +  Q E    + +  + L+
Sbjct: 174 AEEEDSERLGRIREAEDQQSHLEVLLEQKEKEHMMLREEIHQKLQMERDDAKTEASQKLI 233

Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE-QRDYLIAVKT--DGAE 622
           DE   + KE    +E+  +E+ +L             L+ E+E +R  L A+K   D A 
Sbjct: 234 DEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRAA 293

Query: 623 ELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIK 682
           +   +        Q E        S+    + +LK DL     E      +  AL+ E++
Sbjct: 294 QELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELE 353

Query: 683 NLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742
              + L  K  ++   + +   Y      M++  +  E+ +  L+ K E L +   +   
Sbjct: 354 RKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRR--- 410

Query: 743 DCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATP 802
                          ER  K  +E+L  +  D       E  E   A+ +  +E      
Sbjct: 411 --------------KERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQR 456

Query: 803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPL 862
            +  +  +++  + K E E     V++LQLKL ++   +  LK ++ K    Q +QRS L
Sbjct: 457 DRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDL 516

Query: 863 KGLENQMAKIN 873
           +    ++ KI 
Sbjct: 517 ERAHIELEKIR 527

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 49.7 bits (119), Expect = 7e-06
 Identities = 99/425 (23%), Positives = 203/425 (47%), Gaps = 41/425 (9%)

Query: 416 RKMFEEQQTDWENNVKKLREQHEEDLER------QRKFYKTQIETLMTLVKNQQAEDDSE 469
           RK  EE     E  +  LR++H++ +        Q +  K + E   + ++ +  +  ++
Sbjct: 108 RKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQ 167

Query: 470 DETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK 529
            + + ++ + A+ K K   L+ +LSEL+ K   L  +  D++ +   L  EN DL  + +
Sbjct: 168 LDQIAKAKLNAEKKAK--QLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLE 225

Query: 530 ELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT------EIEQLR 583
           E E +V+ LS+        +Q E++ EE K  +SL +E++E    Q        +++ LR
Sbjct: 226 EAEAQVSNLSK------LKSQLESQLEEAK--RSLEEESRERANLQAQLRQLEHDLDSLR 277

Query: 584 SEVEKLSEERRLLTVRSAELEYELEQ----RDYLIAVKTDGAEELQEKLDYMENKFQEES 639
            ++E+ SE +  L  + ++   E++Q     +   A++ +  EEL++KL+   ++ +E +
Sbjct: 278 EQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAA 337

Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
                     E   S+L+++LE  + E  ++      L+K+ KN        DK + + K
Sbjct: 338 EAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNF-------DKILAEWK 390

Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759
            K+ + +      + + +    ++  LK + EEL  QV  L  + ++  + I ++ +   
Sbjct: 391 RKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLG 450

Query: 760 STKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQY-RKQLEDQVNSLKA 818
               N  +L K    RL+A +DEL     A L+ +  A     S+  R Q+E  ++ +++
Sbjct: 451 EGGRNVHELEKA-RRRLEAEKDELQ----AALEEAEAALELEESKVLRAQVE--LSQIRS 503

Query: 819 ELEQR 823
           E+E+R
Sbjct: 504 EIERR 508

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 49.2 bits (118), Expect = 7e-06
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 36/224 (16%)

Query: 403 QIREEYREVQE-DFRKMFEEQQTD-WENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK 460
           +IRE  +++Q  D +    +QQ   +  N+++ R+++ E++ R++  Y   +E   T+ K
Sbjct: 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI-K 233

Query: 461 NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEH------------- 507
            +  E   E   L     +    L    L    +++++K +   +               
Sbjct: 234 AEIEELTDELLNLVMDIEDPSAALN--KLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT 291

Query: 508 ----------EDMSGKLKELTRENRDLVTKNKELEGKV---AQLSRRVEEMERGAQTENK 554
                       +  KLKEL      L T   ELE  +    + S+++ E++    T  +
Sbjct: 292 QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351

Query: 555 P-----EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
                 ++ K +K+ ++E + EF +   E+ +L+ E++K+ + +
Sbjct: 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395

Length = 562

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 49.6 bits (119), Expect = 7e-06
 Identities = 75/412 (18%), Positives = 169/412 (41%), Gaps = 46/412 (11%)

Query: 386 EARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQR 445
           EA++ E +  + K+ E +I +   E+++   ++ + +    +   KKL ++++ +L    
Sbjct: 94  EAQIEELKK-ELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEAL 152

Query: 446 KFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE 505
           K    +      L+K  ++   +    L+   ++A+ K    + K EL+ L        E
Sbjct: 153 KGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVIDFDE 212

Query: 506 EHED------MSGK----LKELTRE--NRDLVTKNKELEGKVAQ-------LSR-RVEEM 545
             +       + G     + EL     N D V +  E   +          ++  R  E+
Sbjct: 213 IEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTITEERKAEL 272

Query: 546 ERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEY 605
           E         EE + L   L+E  ++++     IE+   E+E + +  +  +    E + 
Sbjct: 273 EAHFD-----EEYQELIEQLEELIDKYESH---IEKALEELESILDTEKENS----EFKL 320

Query: 606 ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLES-NR 664
           ++E+   L+    +  E+  +KL   E K ++ S   E  +    +LI  +   +++ N 
Sbjct: 321 DVEELKALLEALEEILEKNLQKL---EEKLKDPSTSIE--LESITDLIESINDIIDAINE 375

Query: 665 --AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD 722
              E N+   + +  + + K    L +     + +LK  I  Y+K    +++   + EK+
Sbjct: 376 LIREHNEKIDNLKKEKNKAKKKLWLHL-----VAELKEDIDAYQKEKKGLEKAINSLEKE 430

Query: 723 IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED 774
           I +L+ + + L +++ +LE    +   T   +    ++      +L K  ED
Sbjct: 431 IKQLEAEIKALEKEIKELEKQLTNIEPTADEINKLLKAYGFGNFELEKEAED 482

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 65  FDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNL---------YRFSNIYGPHT 115
           F++         V++V+D + ++F P    K       NL         Y F  ++   +
Sbjct: 11  FNEKEKQEGTRRVVKVVDDRMLVFDP----KDEEDAFRNLRARRNKELKYSFDRVFDETS 66

Query: 116 TQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
           TQ E+++N    +++  LNG +A +F++G T +GKT T+
Sbjct: 67  TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTM 105

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 50/307 (16%), Positives = 109/307 (35%), Gaps = 6/307 (1%)

Query: 378 PYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQ--QTDWENNVKKLRE 435
             +   L    L   E   K    YQ++E+    +E+   +   +  +   +   + LR+
Sbjct: 190 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRD 249

Query: 436 QHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSE 495
           + EE    +++  K   E ++  V  +  E++ E +   E       + +    +    E
Sbjct: 250 EQEEIESSKQELEK--EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307

Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP 555
                     +  +   K  E   +      +  E E K  ++ R  EE E     + + 
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367

Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615
           +  +  + LL + K E +  ++  +    E+E  +EE +   +     E E +       
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427

Query: 616 VKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQ 675
            +    EEL+E L+  + K  EE    E      + L  +L+     +  +  +     +
Sbjct: 428 EELKIVEELEESLETKQGKLTEEKE--ELEKQALKLLKDKLELKKSEDLLKETKLVKLLE 485

Query: 676 ALQKEIK 682
            L+  + 
Sbjct: 486 QLELLLL 492

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 47/256 (18%)

Query: 383  RLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHE--ED 440
            RL EA     E   + E      E+ +E  +  R+  +E + +     ++     E  E 
Sbjct: 769  RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828

Query: 441  LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE------AQHKLKIQNLKQELS 494
            LER+    + ++E L      +Q E+ SED     + IE       + + +++ L  E +
Sbjct: 829  LERRIAATERRLEDL-----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883

Query: 495  ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME-------- 546
             LE     L  E E++S +L+EL  +  +L  + +EL  K+AQL  R+E +E        
Sbjct: 884  SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943

Query: 547  -------------------RGAQTENKPEEVKYLKSLLDE-------AKEEFKEQTTEIE 580
                                    E     +K L++ + E       A EE++E     +
Sbjct: 944  RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003

Query: 581  QLRSEVEKLSEERRLL 596
             L ++ E L+E +  L
Sbjct: 1004 FLTAQKEDLTEAKETL 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 54/280 (19%), Positives = 126/280 (45%), Gaps = 37/280 (13%)

Query: 471 ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
           E   E     + + +++ L++++ ELE+  + +  E + ++ K+K++  E   +  +N+E
Sbjct: 257 EMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEE 316

Query: 531 LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE-VEKL 589
           LE +  ++ +R  E+       +    V  L++L+  + E   E   + E  R+  +++ 
Sbjct: 317 LEEEY-KIKKRTVEL-----LPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEY 370

Query: 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
              +     +  E + +L++            ++L+ K++ +E++ Q +  +Y++L+ E 
Sbjct: 371 RSLKEKNRNKEDETQRQLDE-----------IKKLRNKIEELESELQTKEQLYKQLLDEY 419

Query: 650 ENL------------ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
           EN             I ++  +++  + + ++   D ++LQKEI N+   L        +
Sbjct: 420 ENAPKSVSRSAYTRRILEIIKNIKKQKEDIDKILSDTRSLQKEINNITGKLDRTFTVTDE 479

Query: 698 LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737
           L  +  K +       E  K   K +A L   C EL + V
Sbjct: 480 LLFRDAKKD-------EHAKKAYKLLAALHENCSELIETV 512

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
           + F  ++    +Q ++F+     +++  L G +A +F++G T SGKT+T+
Sbjct: 48  FTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTM 97

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 36/212 (16%), Positives = 100/212 (47%), Gaps = 13/212 (6%)

Query: 663 NRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD 722
           N+  S     + + L++E+  L + L   ++ +  LK ++   E     ++   +  E+ 
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 723 IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDE 782
           + ELK +   L +++ +L++  +     ++ +E +    +   E+L    E+ L+++++ 
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL----EEELESLEEA 773

Query: 783 LAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN 842
           LA++K                + R+ L++++  L+ ELE+    +  L+ +L    +   
Sbjct: 774 LAKLKEEI---------EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 843 NLKAQMEKSQQQQQQQRSPLKGLENQMAKINI 874
            L+ ++E+ +++ ++    L  LE ++ ++  
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 71/287 (24%), Positives = 141/287 (49%), Gaps = 27/287 (9%)

Query: 396 DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLRE--QHEEDLERQRKFYKTQIE 453
            +KE   +   E + ++++ ++  EE++      +++L +  + E +L + ++  + Q++
Sbjct: 449 HRKELLEEYTAELKRIEKELKE-IEEKERKLRKELRELEKVLKKESELIKLKELAE-QLK 506

Query: 454 TLMTLVKNQQAEDDSEDETLNESAIEAQHKLK--IQNLKQELS---ELEAKYKSLSEEHE 508
            L   +K    E+  +     E   E   KLK  I++LK+EL    EL+ K   L ++ +
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566

Query: 509 DMSGKLKELTRENRDLVTKN-KELEGKVAQL----SRRVEEMERGAQTENKPEEVKYLKS 563
           ++  +L EL +E  +L  ++ +ELE ++ +L    +  +E  +   + E + +E+K L+ 
Sbjct: 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Query: 564 LLDEAKEEFKEQTTEIEQLRSEVE------------KLSEERRLLTVRSAELEYELEQRD 611
            LD+A EE  E    +E+LR E+E            +L EE   L+   A L  ELE+ +
Sbjct: 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686

Query: 612 YLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKA 658
                     E+L+E+L+  E K ++E    E+ +   E L  ++K 
Sbjct: 687 KRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKK 732

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 3e-05
 Identities = 62/357 (17%), Positives = 139/357 (38%), Gaps = 14/357 (3%)

Query: 427 ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK-----NQQAEDDSEDETLNESAIEAQ 481
           +    KL+EQ ++ LE  +   K ++E    L       N++  D  ++   +E      
Sbjct: 197 KLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIES 256

Query: 482 HKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRR 541
            K +++  ++ L+++  + K   +E +    +LK L +E  +L ++  +LE +      +
Sbjct: 257 SKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK 316

Query: 542 VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601
           ++E E   + +   +E+K  K  ++E ++E KE   + E    E E+L + +  L     
Sbjct: 317 LKESE--KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374

Query: 602 ELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE 661
           EL  + +     ++      EE  E  +  E + +    + E+     +    +    +E
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE 434

Query: 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK 721
                        +  Q ++      L  +   +   K ++ K E      K  +  ++ 
Sbjct: 435 ELE-------ESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQL 487

Query: 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA 778
           ++  L+ K EE +Q+ +K        L  IK+       +   +   L +     K 
Sbjct: 488 ELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKV 544

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 47.7 bits (113), Expect = 3e-05
 Identities = 59/355 (16%), Positives = 121/355 (34%), Gaps = 16/355 (4%)

Query: 420 EEQQTDWENNVKKLREQHEED-LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAI 478
            E++       +    Q     L +     K  I  L      Q      +D T   S  
Sbjct: 553 SERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL------QNITVRLQDLTEKLSEA 606

Query: 479 EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
           E     +   L ++L   +          +       +LT  +   +T  +E   +   L
Sbjct: 607 EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE-RVREHAL 665

Query: 539 SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTV 598
           S RV   E  A  +   ++++  K  L   KE   +  T + +L + +E+   E   +  
Sbjct: 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725

Query: 599 RSAELEYELEQRDYLIAVKTDGAEELQ-EKLDYMENKFQ---EESLVYERLMSEKENLIS 654
            S+ L  +L  R+  +              L           EE     +  +E  +L +
Sbjct: 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785

Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKN-LGSLLVDKDKTIGDLKAKIHKYEKYYAVMK 713
           +++        +++     E  + +EI +    L +  +  + + +  + + E+  A + 
Sbjct: 786 EIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845

Query: 714 EDRKTKEKDIAELKTKCEELTQQVTKL--EADCQSYLNTIKNMENDERSTKHNQE 766
           E      K   E   +  +LTQ+  K+   +D  + +N IK   + +   K   E
Sbjct: 846 EITHQLLKY-EECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHE 899

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 72/365 (19%)

Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
           + Y   +++ +  FE+       ++  L+ Q++                           
Sbjct: 249 DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-------------------------- 282

Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
                               +    QE  ++  K K+L E+   +     +       + 
Sbjct: 283 --------------------LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMK 322

Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
            K++E  GK+ +L   +E  E         EE+K L+S +DE  ++ ++Q    EQ    
Sbjct: 323 QKSQEWPGKLEKLKSEIELKE---------EEIKALQSNIDELHKQLRKQGISTEQ---- 369

Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE-ESLVYER 644
            E +++ER  LT    EL+    Q D L         E Q     +E   ++ +SL+   
Sbjct: 370 FELMNQEREKLT---RELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQN- 425

Query: 645 LMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHK 704
                   I++ ++ +  N  +S+   + EQ   K      S+     +   +++ +I  
Sbjct: 426 --------ITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKT 477

Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
            E     ++ED K  + DI EL    E+L  ++++  +  +      +     +R     
Sbjct: 478 EENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEK 537

Query: 765 QEKLL 769
            EK L
Sbjct: 538 LEKEL 542

Length = 622

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
           + F  ++ P T+Q E++   V  +++    G +A + ++G T SGKT+T+
Sbjct: 42  FTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTM 91

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 47.3 bits (112), Expect = 4e-05
 Identities = 67/356 (18%), Positives = 146/356 (41%), Gaps = 25/356 (7%)

Query: 440  DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK----IQNLKQELSE 495
            DL+ + +    ++++  + +K ++   D               K K    ++N  Q+++ 
Sbjct: 699  DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758

Query: 496  LEAKYKSLSEEHEDMSGKLKELTRENRDL---VTKNKELEGKVAQLSRRVEEMERGAQTE 552
               + K+  EE E + G +       +     VT  +  + ++  + R++ +     Q  
Sbjct: 759  DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGS 818

Query: 553  NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDY 612
            +    V+ +     E + E     ++IE  R  ++   E+ + L  ++ EL+ E  Q   
Sbjct: 819  DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878

Query: 613  LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL--ISQLKADLESNRAESNQS 670
             +  +    E+L E    +++  +E     E+    +  L    Q K +L S++  SN+ 
Sbjct: 879  NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK 938

Query: 671  AHDE-QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTK 729
            A D+   +++++KN+   + D +  I D K              +  K KE ++  +  +
Sbjct: 939  AQDKVNDIKEKVKNIHGYMKDIENKIQDGK-------------DDYLKQKETELNTVNAQ 985

Query: 730  CEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
             EE  +   K+  D +     I   +  ER  + N    L+  E+ LK V++EL +
Sbjct: 986  LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT--LRKRENELKEVEEELKQ 1039

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 6e-05
 Identities = 37/202 (18%), Positives = 94/202 (46%), Gaps = 19/202 (9%)

Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
              ++EI+ L        + I +L+ KI + EK  A ++++ +  E+++ +L+ + EEL+
Sbjct: 673 LERRREIEELE-------EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL---LKIYEDRLKAVQDELAEMKCAQL 791
           +Q++ L  D       ++ +E           +L   ++  E+RL+  ++ELAE      
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE------ 779

Query: 792 KPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851
               EA         +QL++++ +L+  L++    +  L  +     E + +L+ ++  +
Sbjct: 780 ---AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836

Query: 852 QQQQQQQRSPLKGLENQMAKIN 873
           +++ +     ++ L   +  + 
Sbjct: 837 ERRLEDLEEQIEELSEDIESLA 858

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 6e-05
 Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 32/242 (13%)

Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
            +  E   D        +        +L +  EE      +      E    L +    +
Sbjct: 775 HKLEEALNDLEARLSHSR--IPEIQAELSKLEEE----VSRIEARLREIEQKLNRLTLEK 828

Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
           +  E E           K +I+++++E+  L  K + L EE E++   L++L     DL 
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
            +  ELE ++ +L R++EE+E  AQ E K + +  LK+ L+  +EE  E      +    
Sbjct: 889 KERDELEAQLRELERKIEELE--AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946

Query: 586 V------EKLSEERRLLTVR---------SAELEYELEQRDYLIAVKTDGAEELQEKLDY 630
                  E +  E + +             A  EYE   +            EL+EK   
Sbjct: 947 PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD---------ELKEKRAK 997

Query: 631 ME 632
           +E
Sbjct: 998 LE 999

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

 Score = 46.4 bits (110), Expect = 6e-05
 Identities = 70/396 (17%), Positives = 161/396 (40%), Gaps = 53/396 (13%)

Query: 378 PYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQH 437
           P +  R +  +  E      +E E ++ +   ++ +      +  +      ++KL++  
Sbjct: 412 PVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKK-- 469

Query: 438 EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
           E DLE         ++  +  ++ + ++ +S+D+ ++   +E   KLK     + LS   
Sbjct: 470 EIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLK-DEFNKRLSRAP 528

Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
             Y SL  + +     L E +R       K+K  + K A+++++ +E+    + + K E 
Sbjct: 529 N-YLSLKYKLD----MLNEFSRAKALSEKKSKAEKLK-AEINKKFKEVMDRPEIKEKMEA 582

Query: 558 VK--YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615
           +K     S      E   +   ++E+++ E+E   E   +L  +S  LE     +     
Sbjct: 583 LKAEVASSGASSGDELDDDLKEKVEKMKKEIE--LELAGVL--KSMGLEVIGVTKKNKDT 638

Query: 616 VKTDGAEELQEKLDYMENKFQEESLVYERLM--SEKENLISQLKADL-ESNRAESNQSAH 672
            +      LQEK++ +    +E +   ER++  S+ ++ I  LK ++ ++++        
Sbjct: 639 AEQTPPPNLQEKIESLN---EEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKE 695

Query: 673 DEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
             +AL+++IK                       +K    +         + +ELK K EE
Sbjct: 696 KIEALEQQIK-----------------------QKIAEAL---------NSSELKEKFEE 723

Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
           L  ++            ++KN ++ E  +K +  ++
Sbjct: 724 LEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRV 759

Length = 762

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156
             Y F  ++GP  TQ ++++  +  +++  L G +  +F++G T SGKT+T+  
Sbjct: 56  GTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG 109

Length = 568

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 1e-04
 Identities = 107/542 (19%), Positives = 220/542 (40%), Gaps = 27/542 (4%)

Query: 380  ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQ-----EDFRKMFEEQQTDWENNVKKLR 434
            +  +  EAR AE     K+    +  E+ R+ +     ED +K    ++ +     ++LR
Sbjct: 1138 DARKAEEARKAED---AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR 1194

Query: 435  EQHE-EDLERQRKFYKT-QIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQE 492
            +  +    E  RK  +  + E        ++AE   + E   + A EA+   + +N ++ 
Sbjct: 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254

Query: 493  LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
                EA+    +     +  +      E +    K K  E K A+  ++ +E ++ A+  
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314

Query: 553  NKPEEVKY----LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
             K +E K      K   D AK++ +E     E  ++E E  ++E      ++   E + E
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374

Query: 609  QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
            +           AEE + K D  + K +E+    + L        ++ KAD    +AE  
Sbjct: 1375 EAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKKAAA---AKKKADEAKKKAEEK 1430

Query: 669  QSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT 728
            + A + +   +E K         ++     +AK    E   A   + +  + K   E K 
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490

Query: 729  KCEELTQQVTKLE--ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE- 785
            K EE  ++  + +  A+ +   +  K  E  +++ +  + +  K  ++  KA + + A+ 
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550

Query: 786  -MKCAQLKPSLEASAATPSQYRKQLEDQVNSL-KAELEQRHNVVRDLQLKLLQKGEMINN 843
              K  +LK + E   A   + +K  ED+  +L KAE  ++    R  ++  L + E    
Sbjct: 1551 LKKAEELKKAEEKKKA--EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE--KK 1606

Query: 844  LKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQL 903
            +KA+  K  ++ + +   LK  E +  K+   +    E+    + L ++  ++  K  + 
Sbjct: 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666

Query: 904  KK 905
             K
Sbjct: 1667 AK 1668

Length = 2084

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 32/49 (65%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153
           + F  ++ P+TTQ +++  +   +++  LNG +  +F++G T SGKT+T
Sbjct: 45  FSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYT 93

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 55/287 (19%), Positives = 123/287 (42%), Gaps = 18/287 (6%)

Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGA 549
            ++  ELE ++K      E MS +   L  +  +   +  ELE  +  L+++ +E +R  
Sbjct: 184 TEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVL 243

Query: 550 QTE-----NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
           +               LK  L +   + +++ TE   L+ E E+L E+ R       E  
Sbjct: 244 EGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLR----TLQERL 299

Query: 605 YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
              +Q+  L+  +      L++      ++ + ES      +S+    + + ++     R
Sbjct: 300 ESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQER 359

Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK----E 720
               QSA   +A +  I+ L + L+  ++ + + +++  K E    + K+  + +     
Sbjct: 360 ETLRQSA---EADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENR 416

Query: 721 KDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
           ++++EL++    L ++  +L+ + Q  L+ I+ +E   R  K   EK
Sbjct: 417 RELSELRSALRVLQKEKEQLQEEKQELLDYIRVLE--LRLDKEADEK 461

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-04
 Identities = 75/416 (18%), Positives = 161/416 (38%), Gaps = 29/416 (6%)

Query: 396  DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETL 455
            +K E   + +EE ++  +  +K  EE++        + +++ EED ++  +  K      
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKK-----KADEAKKKAEEDKKKADELKKAAAAKK 1418

Query: 456  MTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
                  ++AE+  + +   + A EA+   + +   +E  + E   K   E  +    K K
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478

Query: 516  ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
                +  D   K  E   K A  +++  E ++ A    K EE K         + +  ++
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538

Query: 576  TTEIEQLRS--EVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEK--LDYM 631
              + E+ +   E++K  E ++    + AE   + E+   +   K + A++ +E    + M
Sbjct: 1539 AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598

Query: 632  ENKFQEESLVYERLMSEKENLIS-----------------QLKADLESNRAESNQSAHDE 674
            +   +E+ +  E     +E  I                  + K   E  +AE  + A +E
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658

Query: 675  QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
              ++   +   +   ++DK   +   K  + EK  A   +    + K   ELK K  E  
Sbjct: 1659 NKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715

Query: 735  QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQ 790
            ++  +L+   +      +  + +    K   E+  K  E++ K    +  E K A+
Sbjct: 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771

Length = 2084

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 51/310 (16%), Positives = 109/310 (35%), Gaps = 14/310 (4%)

Query: 555 PEEVKYLKSLLDEAKEEFKEQ------TTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
           P   K L+ L  EA   +K           +E+L+ E  ++ E  +      A     LE
Sbjct: 157 PASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEK----EYATYHKLLE 212

Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
            R    A   +   EL+   D++      +++     + E + L  +L    E       
Sbjct: 213 SRRAEHARLAELRSELRADRDHIRA--LRDAVELWPRLQEWKQLEQELTRRREELATFPR 270

Query: 669 QSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT 728
                 +  +  ++   + +      + +LK    +       + +      + ++E+K 
Sbjct: 271 DGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKA 330

Query: 729 KCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKC 788
              ELT+ +  +EAD +       N    ER       + +  Y+   + ++   A   C
Sbjct: 331 SAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAY-C 389

Query: 789 AQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQM 848
            +L            + R++L D    ++A  E R   +     +++ K E+ N    + 
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANS-QVIDKEEVCNLYDRRD 448

Query: 849 EKSQQQQQQQ 858
              Q+Q+  +
Sbjct: 449 TAWQKQRFLR 458

Length = 984

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 34/230 (14%)

Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR 522
            A+D    +   +  I A  K KI+  + + ++LE + KSL  E   +  +L E   + +
Sbjct: 34  AADDKQLKQI--QKEIAALEK-KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90

Query: 523 DLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582
            L  +  +L  ++  L   V+E E+  +          L   L   +   +         
Sbjct: 91  KLRKQIADLNARLNAL--EVQEREQRRR----------LAEQLAALQRSGRN-------- 130

Query: 583 RSEVEKLSEERRLLTVRSAELEYEL-----EQRDYLIAVKTD------GAEELQEKLDYM 631
                 +S E    +VR A     L     E+ D L A               Q +L  +
Sbjct: 131 PPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTL 190

Query: 632 ENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
            ++ + +     +L+ E++  ++QL ++L +++ +  +   +E  L+ EI
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240

Length = 420

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 479 EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
           E + + +I   ++ + +LE   + L EE+ ++  +L+EL RE        ++LE ++ + 
Sbjct: 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREI-------EKLESELERF 462

Query: 539 SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
            R V +  R      K  E++     ++  ++E +E+   +E+L  ++ +L + R+L 
Sbjct: 463 RREVRDKVR------KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514

Length = 652

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 74/333 (22%), Positives = 135/333 (40%), Gaps = 61/333 (18%)

Query: 382 IRLLEARLAE----FEGF--DKKEFEYQIREEYREVQEDFRKMFE-------EQQTDWEN 428
           I  LEA L E    +E    +      ++ EE +   E   K F        E++   E 
Sbjct: 211 IEALEAELKEQSEKYEDLAQEIAHLRNEL-EEAQRSLESLEKKFRSEGGDLFEEREQLER 269

Query: 429 NVKKLREQHEEDLERQRKF----------------YKTQIETLMTLVKNQQAEDDSED-- 470
            +K++    + +  + R+                  K Q++      +NQ  +++ E+  
Sbjct: 270 QLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERD 329

Query: 471 ----ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVT 526
               E+L + A+ A+H  +I     EL+E++    + SE    +SG   ELT+    +  
Sbjct: 330 KELLESLPKLALPAEHVKEIAA---ELAEIDKPATTDSEIPHRLSGS--ELTQLEVLIQQ 384

Query: 527 KNKELEGKVAQLSRRVEEMERGAQTENK-------PEEVKYLKSLLDEAKEE-------F 572
             +EL+   +QL + + E+E      +K        E++  L   L EA+ E        
Sbjct: 385 VKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEI 444

Query: 573 KEQTTEIEQLRSEVEKLSEERRLLT---VRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
           +E   ++E L+  +E L +     T   + + ELE  +   D       +  E+L E+  
Sbjct: 445 EELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREKLLER-- 502

Query: 630 YMENKFQEESLVYERLMSEKENLISQLKADLES 662
               + +EE     + +  K NLIS+LK D E+
Sbjct: 503 -KLQQLEEEITKSFKKLMRKHNLISRLKIDPET 534

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F  +Y P++TQ +++      +++  L G +  +F++G T +GKTFT++
Sbjct: 50  FTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTME 100

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 99/533 (18%), Positives = 192/533 (36%), Gaps = 82/533 (15%)

Query: 404 IREEYREVQEDF--RKMFEEQ----QTDWENNVKKLREQHEEDLERQRKFYKTQIETLMT 457
           +  E  ++QEDF      E +      +   + ++L E+ EE  E + +  + Q+ TL  
Sbjct: 244 VAPEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNR-LRQQLRTLED 302

Query: 458 LVKNQQAEDDSEDETLNES---------AIEAQH----KLKIQNLKQELSELEAKYKSLS 504
            +K  + E + E    N            +E Q        I+ L+ +L +L     S+ 
Sbjct: 303 QLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLP----SIR 358

Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKS 563
            E E++  +L  LT +++D+  K + L+ K+ +  +   ++E+   +     EE    K+
Sbjct: 359 SELEEVEARLDALTGKHQDVQRKYERLKQKIKE--QLERDLEKNNERLAAIREEKDRQKA 416

Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
            ++E  +  + Q  +  QL +   + +EE   L +R   L+  L+             E 
Sbjct: 417 AIEEDLQALESQLRQ--QLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQL-EI 473

Query: 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQ----LKADLESNRAESNQSAHDEQALQK 679
             E L+  + + ++     E+L SE   L  +    L+A   + R         ++   +
Sbjct: 474 NDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQ 533

Query: 680 EIKNLGSLL-------VDKDKTIG-----------DLKAKIHKYEKYYAVMKEDRKTKEK 721
                GSLL          +++IG           DL  ++ +      +       +  
Sbjct: 534 LSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRL 593

Query: 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND----------------ERSTKHNQ 765
           D+ +      EL +++ + E   QS +   K  E                  E  T   Q
Sbjct: 594 DVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQ 653

Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQL---KPSLEASAATPSQYRKQLEDQVNSLKAEL-E 821
            +L      RL+  Q  L +     +   K   E          KQL +Q  +    L +
Sbjct: 654 ARLDLQ---RLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKD 710

Query: 822 QRHNVVRDLQLKLLQ----KGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870
               +  +   K           +  L A +E ++ Q + +   LK L+ Q  
Sbjct: 711 DFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKAR---LKELKKQYD 760

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 53/301 (17%), Positives = 117/301 (38%), Gaps = 27/301 (8%)

Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL-----SRRVEEME 546
           E+  LEA+ K  SE++ED++ ++  L  E  +     + LE K           R +   
Sbjct: 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLER 269

Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
           +  + E   +  +     L             ++  +++++K  + ++    +    E +
Sbjct: 270 QLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERD 329

Query: 607 LEQRDYLI--AVKTDGAEELQEKLDYMENKFQEESLVYERL----MSEKENLISQLKADL 660
            E  + L   A+  +  +E+  +L  ++     +S +  RL    +++ E LI Q+K +L
Sbjct: 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKREL 389

Query: 661 ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR---K 717
              +   +Q   +     +E++   + +  K  TI   +    +  +    + E +    
Sbjct: 390 ---QDAKSQLLKE----LRELEEELAEVDKKISTIPSEE----QIAQLLEELGEAQNELF 438

Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ--EKLLKIYEDR 775
             E +I EL  + E L + +  L            N    ER+       +K LK + ++
Sbjct: 439 RSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREK 498

Query: 776 L 776
           L
Sbjct: 499 L 499

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 66/452 (14%), Positives = 134/452 (29%), Gaps = 55/452 (12%)

Query: 392  FEGFDKKEF--EYQIREEYREVQEDFRKMFEEQQTDWE-NNVK-----------KLREQH 437
            F    K+    +   R E  E     R++ E +      +++K           +L++  
Sbjct: 861  FSLLKKETIYLQSAQRVELAE-----RQLQELKIDVKSISSLKLVNLELESEIIELKKSL 915

Query: 438  EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
              DL    +F    I  L  L+ N   E+    E   +     +       LK+   E E
Sbjct: 916  SSDLIENLEFKTELIARLKKLLNNIDLEEGPSIE-YVKLPELNKLHEVESKLKETSEEYE 974

Query: 498  AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG---KVAQLSRRVEEMERGAQTENK 554
               K  +    + +    EL    ++L   +K+         QL     E+         
Sbjct: 975  DLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKI 1034

Query: 555  PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
                    S+L   ++       E  QL++  + L   R    +   +L       + L 
Sbjct: 1035 ISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLK 1094

Query: 615  AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
             +               + +    +LV       +  +   +K +L    ++        
Sbjct: 1095 TIN------------VKDLEVTNRNLVKPA-NVLQFIVAQMIKLNLLQEISKFLSQ--LV 1139

Query: 675  QALQKEIKNLGSLLVDKDKTIGDLKAKIHK-YEKYYAVMKEDRKTKEKDIAELKTKCEEL 733
              L+   + L  L ++ D  +              +A + E R  +    A    K +  
Sbjct: 1140 NTLEPVFQKLSVLQLELD-GLFWEANLEALPSPPPFAALSEKRLYQS---ALYDEKSKLS 1195

Query: 734  TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKP 793
            + +V  L+       N +  + +   S     +KL K+    +             +   
Sbjct: 1196 SSEVNDLK-------NELIALFSKIFSGWPRGDKLKKL----ISEGWVPTEYSTSLKGFN 1244

Query: 794  SLEASAATPSQYRK-QLEDQVNSLKAELEQRH 824
            +L     TP+     +L   +NS+   L    
Sbjct: 1245 NLNKKFDTPASMSNEKLLSLLNSIDNLLSSYK 1276

Length = 1463

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 85/512 (16%), Positives = 188/512 (36%), Gaps = 71/512 (13%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
           +     E+ +   E       E +    Y+E++E   K+         + V K R    +
Sbjct: 249 DMKNRYESEIKTAES--DLSMELEKNNYYKELEERHMKIIN-------DPVYKNRNYIND 299

Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
             +     YK  IE    ++ N  AE +     + + ++  +        K    +L  +
Sbjct: 300 YFK-----YKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQ 354

Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVK 559
              L     D +  LK +    + +   +K +E   A +S  ++  E       K  E+ 
Sbjct: 355 ILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK--ELN 412

Query: 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS------------------- 600
            +   L +   +       I  LR  +++LS    +L  +S                   
Sbjct: 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIIN 472

Query: 601 ------AELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654
                 + LE ++ + +  +    +   +L+++ +Y+E++   +S+     +      + 
Sbjct: 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLE 532

Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
            +K  +     E        + ++   K+L          + DL +K   +    AV+  
Sbjct: 533 DIKIKI----NELKDKHDKYEEIKNRYKSL---------KLEDLDSKRTSWLNALAVISL 579

Query: 715 -DRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYL-NTIKNMENDERS--TKHNQEK 767
            D +T      E+K +  +L  ++ ++E    D +SY+  +I+ +EN+  +   K+N+ +
Sbjct: 580 IDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQ 639

Query: 768 LLKIYEDRL----KAVQDELAEMKC-----AQLKPSLEASAATPSQYRKQLEDQVNSLKA 818
             KI  ++L       + ++AE+        ++   +        + RK L D   + +A
Sbjct: 640 ENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKAL-DDAKANRA 698

Query: 819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850
            LE    ++R    +L  +   IN     M+K
Sbjct: 699 RLESTIEILRTRINELSDRINDINETLESMKK 730

Length = 895

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 39/359 (10%)

Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL--TVRSAELEYELEQRDYLIAVKTDG 620
           S +D  +E+ K    E+E ++ ++    +   +    +    +EY     DY        
Sbjct: 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA-- 240

Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
             EL    D M+N+++ E    E  +S +    +  K   E +    N   +  +    +
Sbjct: 241 LNELSSLED-MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIND 299

Query: 681 IKNLGSLLVDKDKTIGDLKAKIHKYE---KYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737
                + + +K + + ++ A+I+KY    K  +V+++D      D  + K++ ++L  Q+
Sbjct: 300 YFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDY----NDYIKKKSRYDDLNNQI 355

Query: 738 TKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEA 797
            +LE     Y + +K++E        + +K ++ Y   ++ +   ++E+        L+ 
Sbjct: 356 LELEGYEMDYNSYLKSIE--------SLKKKIEEYSKNIERMSAFISEI--------LKI 399

Query: 798 SAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857
               P   +K+L +    +  +L+   + V  L  +      +  NL       +    Q
Sbjct: 400 QEIDPDAIKKELNE----INVKLQDISSKVSSLNQR---IRALRENLDELSRNMEMLNGQ 452

Query: 858 QRSPLKGLENQMAKINIDRSPSGED----TDDPDFLPRSRCKSTSKKRQLKKPSTHLNS 912
              P+ G      K N   +   E      +    +         K   LKK   +L S
Sbjct: 453 SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLES 511

Length = 895

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 5e-04
 Identities = 63/322 (19%), Positives = 121/322 (37%), Gaps = 14/322 (4%)

Query: 382 IRLLEARLAEFEGFDKKEFEYQ-IREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEED 440
           +  LE  L+  +   +   E + + +E RE++E+  ++ E ++   E   +KL +     
Sbjct: 483 LEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLL 542

Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY 500
            E +    K Q++ L   ++  +       E L E  +    K +++ L++ L EL+ K 
Sbjct: 543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602

Query: 501 KSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKY 560
           K L E    +   L+       +L     ELE           E+E+        E ++ 
Sbjct: 603 KELEERLSQLEELLQS-----LELSEAENELE---EAEEELESELEKLNLQAELEELLQA 654

Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG 620
               L+E  EE + +     Q     E+L E+   L     ELE   E+ + L+  K   
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLK-KLGE 713

Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
            E+L E+L       + E    ++ + + E  +  L+   E       ++      L + 
Sbjct: 714 IEQLIEEL----ESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQI 769

Query: 681 IKNLGSLLVDKDKTIGDLKAKI 702
                 +L        DL+   
Sbjct: 770 EAEANEILSKLSLNRYDLRRLT 791

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 13/171 (7%)

Query: 385  LEARLAEFE-GFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLER 443
            LE  + E E   +    E    EE   +     +   E+  + E+   +LR + EE  E+
Sbjct: 864  LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 444  QRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKY 500
              +         + +  +   E  SE+ +L     EA     +   +  ++ L  LE K 
Sbjct: 924  LAQLELRLEGLEVRI--DNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 501  KSLS-------EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
            K L        EE+E++  +   LT +  DL    + LE  + ++ R   E
Sbjct: 982  KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 35/276 (12%)

Query: 431 KKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLK 490
            +L EQ   + E +    + +   L  L   QQ+  D          +E     + Q  +
Sbjct: 635 AELEEQKRAEAEARTALKQAR-LDLQRLQNEQQSLKD---------KLELAIAERKQQAE 684

Query: 491 QELSELEAKYKSLSEEHEDMSGKLKELTRENR-DLVTKNKELEG----KVAQLSRRVEEM 545
            +L +L+A+ K L E+ +     LK+  RE R + + K + +EG    ++AQLS  +E  
Sbjct: 685 TQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAA 744

Query: 546 ERGAQTENKPEEVKYLKSL---------LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
              A+   K  + +Y + L         + E K + +E  T IE++     ++ E R  +
Sbjct: 745 RTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFM 804

Query: 597 TVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
                  +   E+R             L  +L  +E+  +E      RL+ + +    +L
Sbjct: 805 QETWLHRDSLREERP-----------NLAIQLRELESSAEELQQELTRLIKDTKLRRKKL 853

Query: 657 KADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
           + + ++   + +Q     + L+ E++ L  L    +
Sbjct: 854 EQERKALEKQLDQLDELLRGLRDEMRQLAELKEPAN 889

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein

 Score = 43.0 bits (102), Expect = 5e-04
 Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 71/329 (21%)

Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
           K++ L ++N++L  K +EL  K +    R+  +          +E++ L+  LDE   E 
Sbjct: 19  KVRFLEQQNKELEAKIEELRQKKSAEPSRLYSLYE--------QEIRELRKQLDELTNER 70

Query: 573 KEQTTEIEQLRSEVE----KLSEERRLLTVRSAELEYELEQRDYLIAVKTD---GAEELQ 625
                EI+ LR   E    K  +E  L      ++    +  D     + D     E LQ
Sbjct: 71  ARLQLEIDNLRLAAEDFREKYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQ 130

Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLG 685
           E+L +++   +EE              + +L++ ++                  E+    
Sbjct: 131 EELAFLKKNHEEE--------------VRELQSQIQGQV-------------NVEMDA-- 161

Query: 686 SLLVDKDKTIGDLKAK--------IHKYEKYYAVMKED-RKTKEKDIAELKTKCEELTQ- 735
           +  +D  K + +++A+          + E++Y    E+ ++   ++   L++  EE+T+ 
Sbjct: 162 ARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQAAARNGDALRSAKEEITEL 221

Query: 736 --QVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKC---AQ 790
             Q+  LE + QS      ++E      +   E  L  Y+D +  +++EL ++K     Q
Sbjct: 222 RRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTISELEEELQQLKAEMARQ 281

Query: 791 L---------KPSLEASAATPSQYRKQLE 810
           L         K +L+   AT   YRK LE
Sbjct: 282 LREYQELLDVKLALDIEIAT---YRKLLE 307

Length = 312

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 5e-04
 Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 52/202 (25%)

Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
           ++E +  + E  +E +   ++   E + +      KLR + E++L  +R   +   + L 
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL- 91

Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
                 Q E     E L+          K++ L++   ELE K K L ++ +++  K +E
Sbjct: 92  -----LQKE-----ENLDR---------KLELLEKREEELEKKEKELEQKQQELEKKEEE 132

Query: 517 LTRENRDLVTK-NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
           L      L+ +  +ELE +++ L+                EE K  + LL++ +EE + +
Sbjct: 133 LEE----LIEEQLQELE-RISGLTA---------------EEAK--EILLEKVEEEARHE 170

Query: 576 TTEI-----EQLRSEVEKLSEE 592
              +     E+ + E +K ++E
Sbjct: 171 AAVLIKEIEEEAKEEADKKAKE 192

Length = 520

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 69/397 (17%), Positives = 148/397 (37%), Gaps = 74/397 (18%)

Query: 431  KKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLK 490
            +  RE+  E L  +R                     +   E     + + Q   K+Q L 
Sbjct: 781  RAAREKRIEQLRAER---------------------EELAERYATLSFDVQ---KLQRLH 816

Query: 491  QELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQ 550
            Q  S     + +++ E  D   +L++L R   +L     + E +  Q   ++E+ + G  
Sbjct: 817  QAFSRFIGSHLAVAFE-ADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875

Query: 551  TENK--PEEVKYLKSLLDEAKEEFKEQTTEIEQ----LRSEVEKLSE-ERRLLTVRSAEL 603
              N+  P         L +  EE +EQ  E E+    ++     L++ E  +  ++S   
Sbjct: 876  ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE 935

Query: 604  EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ-EESLVYE---RLMSEKENLISQLKAD 659
            ++E  ++DY  A +T    + +++   +    Q      YE    ++++  +L  +L+  
Sbjct: 936  QFEQLKQDYQQAQQT--QRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR 993

Query: 660  LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE----- 714
            LE  +AE  ++   EQ  Q + +     L   ++ +  LK+      +    +K+     
Sbjct: 994  LE--QAEQERTRAREQLRQAQAQ-----LAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046

Query: 715  --------------DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
                           R      ++  +++  +L +Q+T  EA+  +    ++ +E D   
Sbjct: 1047 GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106

Query: 761  TKHNQEKLLKIYEDRLKAVQD----------ELAEMK 787
             +         +   L+ V+D          ELA + 
Sbjct: 1107 MREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLS 1143

Length = 1486

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 42.8 bits (102), Expect = 7e-04
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 29/137 (21%)

Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK--YKSLSEEHEDMSGKLKEL 517
           K ++AE++++   L E+  EA+       +K+E   LEAK     L  E E      KEL
Sbjct: 32  KIKEAEEEAK-RILEEAKKEAE------AIKKEA-LLEAKEEIHKLRNEFE------KEL 77

Query: 518 TRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
                +L    K L  K   L R++E +E+              +  L++ ++E +++  
Sbjct: 78  RERRNELQKLEKRLLQKEENLDRKLELLEK-------------REEELEKKEKELEQKQQ 124

Query: 578 EIEQLRSEVEKLSEERR 594
           E+E+   E+E+L EE+ 
Sbjct: 125 ELEKKEEELEELIEEQL 141

Length = 520

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 43.1 bits (102), Expect = 8e-04
 Identities = 79/479 (16%), Positives = 180/479 (37%), Gaps = 47/479 (9%)

Query: 420 EEQQTDWENNVKKLREQH---EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDE---TL 473
            E+Q + +    +LR+Q    E+ L+  R     ++      +   ++E +  ++     
Sbjct: 280 AEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAF 339

Query: 474 NESAIE--AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT--RENRDLVTKNK 529
            ++ IE       ++ +++ EL E+EA+  +L+ +H+D+  K + L    + +      +
Sbjct: 340 EDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQ----LER 395

Query: 530 ELEGKVAQLSRRVEEMERGAQTENKPEEV--KYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
           +LE    +L+   EE +R      +  +     L+  L+  K EF E+  E+E     ++
Sbjct: 396 DLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLK 455

Query: 588 KLS-----EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQE-----KLDYMENKFQE 637
           +           L  +   +   E  Q +   A       + +      + D      Q 
Sbjct: 456 QRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQR 515

Query: 638 ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
                 +L    + L  QL     S        A   +      +++G ++  +     D
Sbjct: 516 AERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWE------ESIGKVISPELLERTD 569

Query: 698 LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757
           L  ++ +      +       +  D+ +      EL +++ + E   QS +   K  E  
Sbjct: 570 LDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQ 629

Query: 758 ERSTKHNQEKLLKIYEDRLKAVQ---DELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
                   E+  +   +   A++    +L  ++  Q     +   A   + ++Q E Q+ 
Sbjct: 630 LVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER-KQQAETQLR 688

Query: 815 SLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG-LENQMAKI 872
            L A+L+Q           L Q+   +  LK    + + ++  +   ++G L+NQ+A++
Sbjct: 689 QLDAQLKQL----------LEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQL 737

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 23/121 (19%)

Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKI----- 486
           K RE  E  +ERQRK  K QI+ L ++V+ +QAE D      +E+  EA+   +I     
Sbjct: 334 KAREVSELKMERQRK--KPQIDELESIVRLKQAEADMFQLKADEARREAERLQRIALAKT 391

Query: 487 ---------QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ 537
                    + LK  LSE E + + L EE       LK     +RD  +    +E K+  
Sbjct: 392 EKSEEEYASKYLKLRLSEAEEERQYLFEE-------LKLQEESHRDSDSMKMRMESKIRG 444

Query: 538 L 538
           L
Sbjct: 445 L 445

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 16/50 (32%), Positives = 33/50 (66%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
           + F ++   +T Q ++FQ++   ++E  L+G +  +F++G T SGKT+T+
Sbjct: 43  FTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTM 92

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 89/527 (16%), Positives = 191/527 (36%), Gaps = 33/527 (6%)

Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
           E I+ L   L       K E E   R       ED +   E      E     LRE+  +
Sbjct: 156 EEIKKLLEMLQSKGLSAKAEEEDSERLGRIREAEDQQSHLEVLLEQKEKEHMMLREEIHQ 215

Query: 440 DLERQRKFYKTQ-IETLMTLVKNQQA--EDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
            L+ +R   KT+  + L+     +    E   E        ++++      +  +   E+
Sbjct: 216 KLQMERDDAKTEASQKLIDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEV 275

Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME--------RG 548
           EA+  +L+          +EL+R+  +L+    ELE    Q S   + ++          
Sbjct: 276 EAERSALAAMKAKCDRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAE 335

Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE----RRLLTVRSAELE 604
            +      EV  L+  L+       ++T  ++  + E    + E    R        +L 
Sbjct: 336 QEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLR 395

Query: 605 YELEQRDYLIAVKTDGAEELQE-----KLDYMENKFQEESLVYERLMSEKENLISQLK-- 657
              ++ + L          L+E     +    +          E+ ++EKE +I +LK  
Sbjct: 396 VLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQ 455

Query: 658 -ADLESNRAESNQSAHDE-QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
               E    E  ++   E + L++E++NL   L +++  +  LK ++ K        + D
Sbjct: 456 RDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSD 515

Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN------TIKNMENDERSTKHNQEKLL 769
            +    ++ +++ K E+L +++ +L A+ +S                D    ++  ++LL
Sbjct: 516 LERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLL 575

Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
              E   +   D   EM+  +L   LE +    ++ +++ E      + +  +       
Sbjct: 576 DRLEKAEQERDDT--EMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAER 633

Query: 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDR 876
           L+ K   + E +                    ++ LE+ + ++  +R
Sbjct: 634 LE-KSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAER 679

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 60/329 (18%), Positives = 125/329 (37%), Gaps = 16/329 (4%)

Query: 465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHED-----MSGKLKELTR 519
           E   + E L +   E ++  ++     +L EL+ +   L E+ +         +  EL  
Sbjct: 168 EKRKKKERLKKLIEETENLAELII---DLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224

Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
           EN   +   K  E ++  L       +   + E+  +E++  + +L +  +E KE+  E 
Sbjct: 225 ENLLYLDYLKLNEERIDLLQE--LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEK 282

Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV-KTDGAEELQEKLDYMENKFQEE 638
           +    E++ L++E   L     + E    +R  +    K   +E+  +KL+    K +EE
Sbjct: 283 KLQEEELKLLAKEEEEL-----KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337

Query: 639 SLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDL 698
               E+ + E E      + + E       +    E+ L  + K     L    K   + 
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397

Query: 699 KAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDE 758
               ++ EK   ++ E  + +E  + E K +  ++ +++ +     Q  L   K     +
Sbjct: 398 LELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQ 457

Query: 759 RSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
                  +  LK  ED LK  +      +
Sbjct: 458 ALKLLKDKLELKKSEDLLKETKLVKLLEQ 486

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 31/237 (13%)

Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE-----EHEDMSGKLKEL 517
             E  ++++   E  +  + KL +   +   S+ E  Y+ + +        +     +EL
Sbjct: 444 LEEFQAKEQEATEELLSLEQKLSVA--QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREL 501

Query: 518 TRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
            R  R+     + L  ++ QL  R+ E+E+  + + + E       LL E  +   +   
Sbjct: 502 LRRLREQ----RHLAEQLQQLRMRLSELEQRLRQQQRAER------LLAEFCKRLGKNLD 551

Query: 578 ---EIEQLRSE----VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE---LQEK 627
              E+EQL+ E    +E LSE       R   L  +LEQ    I      A      Q+ 
Sbjct: 552 DEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDA 611

Query: 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
           L  +  +  EE    + +       + QL         E ++ A  +QAL +EI+ L
Sbjct: 612 LARLREQSGEEFEDSQDVT----EYMQQLLERERELTVERDELAARKQALDEEIERL 664

Length = 1486

>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353)

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 19/219 (8%)

Query: 439 EDLERQRKFYKTQIETLMTLVKN-QQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
           E  + +R  +K   ETL    +N +++E + E     +  ++ +   K Q+L Q L +  
Sbjct: 19  EKCQNERDQFKLMAETLQMRYRNLKKSERELELVAACQGDMKIKPGTKRQDLSQLLEKYR 78

Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
            + + LS + +++  +  EL  + + L     +          RVE M  G +     EE
Sbjct: 79  EENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQ---------RVEFMGGGVR--ESFEE 127

Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
              L S L++ +E+ K+  +++  L  E E++  ER     ++  L  EL        + 
Sbjct: 128 RNDLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKAHRLNNELS-----YLLG 182

Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
            D    +      MEN++ +E +    L  E E +   L
Sbjct: 183 GDPRRVVDVDALVMENRYLKEKI--NTLEEESELIKMTL 219

Members of this family of uncharacterized proteins have no known function. Length = 319

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)

Query: 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
            K+L        R +EE ++ A+T          K  L EAKEE       + +LR+E+E
Sbjct: 24  EKKLGSAEELAKRIIEEAKKEAET--------LKKEALLEAKEE-------VHKLRAELE 68

Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
           +  +ERR    R   LE  L QR+  +  K +  ++ +E L+  E +   +    +    
Sbjct: 69  RELKERRNELQR---LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125

Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
           E E LI++ + +LE     S  +   E+A +  ++ +      +++   +    I + E+
Sbjct: 126 ELEELIAEQREELER---ISGLTQ--EEAKEILLEEV------EEEARHEAAKLIKEIEE 174

Query: 708 YYAVMKEDRKTKE 720
             A  + D+K KE
Sbjct: 175 -EAKEEADKKAKE 186

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 5   GTIEQPGIIPRTLNILFNSLGPY 27
           G+    GI+PR+L+++FNS+G Y
Sbjct: 108 GSPGDGGILPRSLDVIFNSIGGY 130

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 13/299 (4%)

Query: 379 YETIRLLEARLAEFE-GFDKKEFEYQIREEY-REVQEDFRKMFEEQQTDWENNVKKLREQ 436
            E I  LE  L E E    +     +  +E   E  E    + EE +   E    +  ++
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE 559

Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQ-AEDDSEDETLNESAIE--AQHKLKIQNLKQEL 493
               LE + +  K  +E L  L   ++  E+  E     +  ++   +   +++ L Q L
Sbjct: 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619

Query: 494 SELEAKY--KSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV----AQLSRRVEEMER 547
              EA+   +   EE E    KL         L    +ELE KV    A++ R ++ +E 
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679

Query: 548 GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607
             Q E K EE++ L+  L++ +EE +E   ++ ++   +E+L   +  L     ELE   
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739

Query: 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL--MSEKENLISQLKADLESNR 664
           +  + L  ++    +             Q E+   E L  +S     + +L    + N 
Sbjct: 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNG 798

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 24/226 (10%)

Query: 380  ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHE- 438
            E +  +EARL E E       +       +E  E   +  +EQ+ D +  +K + ++ E 
Sbjct: 805  EEVSRIEARLREIEQ------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 439  -----EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH-KLKIQNLKQE 492
                 E+LE + +  +  +  L + + + + E D  +  L E   + +  + +I+  ++ 
Sbjct: 859  LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

Query: 493  LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL--EGKVAQLSRRVE-EMERGA 549
            LSEL+AK ++L EE       L E+     +     +E      V    +RVE E+    
Sbjct: 919  LSELKAKLEALEEE-------LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971

Query: 550  QTENK-PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
                   +E + +   LDE KE+  +   E + +   +E+  +++R
Sbjct: 972  PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 90/462 (19%), Positives = 180/462 (38%), Gaps = 45/462 (9%)

Query: 413 EDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDET 472
           E+ R+  EE Q +     KKL+    E         K +        + ++ E D+E   
Sbjct: 195 EELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIK----HLEEELKRYEQDAEVVK 250

Query: 473 LNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
             +  +     L+I  L++EL+ L  + + L    ED     +EL      L    K  E
Sbjct: 251 SMKEQL-----LQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMRE 305

Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK---EQTTEIEQLRSEVEKL 589
            K+A L    E++E          E+K  KSLL +     +   + +  I  L++E  +L
Sbjct: 306 -KLADLELEKEKLE---------NELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQL 355

Query: 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
            E+   ++  + +LE  L+Q             EL++KL+ ++       L     +  K
Sbjct: 356 KEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKA--LVRRLQRRLTLVTK 413

Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
           E     L+A L S   E  +++   Q L K ++    L+      +  ++ ++ + E+  
Sbjct: 414 E--RDGLRAILNSYDKELTETSVSGQ-LMKRLEEAEDLVQKVQSHLAKMENQLSELEEDV 470

Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLL 769
              K+   T E +I  LK +     + ++ ++    +    I+ +E +    +  +  L 
Sbjct: 471 GQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLE 530

Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
              E          +  K   +      S    S+  +  +  + +L+AE E+    ++ 
Sbjct: 531 MKLEHLCLQGDYNASRTKVLHM------SLNPASEAEQIAKQTIEALQAECEKLKERLQA 584

Query: 830 LQLKLLQKGEM------------INNLKAQMEKSQQQQQQQR 859
           L+    Q G++            I  LK Q+E ++++ Q+ +
Sbjct: 585 LEEGKSQPGDLEKAVGSHISSKEIAQLKKQVESAEKKNQRLK 626

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 41.9 bits (98), Expect = 0.002
 Identities = 72/399 (18%), Positives = 151/399 (37%), Gaps = 50/399 (12%)

Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
           +  L+ EL          +   +    +      E  D+  + ++ E K+  L +++E +
Sbjct: 345 VDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENL 404

Query: 546 ERGAQTENK--PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
           +   + + +   EE + L+SL  +          ++E+  +E E++ E  RL   R  + 
Sbjct: 405 QETFRRKERRLKEEKERLRSLQTDTNT--DTALEKLEKALAEKERIIE--RLKEQRDRDE 460

Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLIS-QLKADLES 662
            YE E+ +          E+L+E++  ++ K  E  L  E L  E   L S QLK   + 
Sbjct: 461 RYEQEEFETY----KKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDL 516

Query: 663 NRAE----------------------SNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700
            RA                       + +SA    A+        +        +  L  
Sbjct: 517 ERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLD 576

Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
           ++ K E+       +R   E +   L  + E+  + +TK +          +  E     
Sbjct: 577 RLEKAEQ-------ERDDTEMEAGRLAKELEKAQRHLTKQQ----------EKTEATRIE 619

Query: 761 TKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAEL 820
            +    +LL+  E   K+  +E    +  Q+  +  A+      + ++LE  +  L+AE 
Sbjct: 620 FERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAER 679

Query: 821 EQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQR 859
           EQ    +   Q  L++  + +N  +A+  K  ++ ++ +
Sbjct: 680 EQLVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRELK 718

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 0.002
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)

Query: 562 KSLLDEAKEEFK--------EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
           K +L+EAK+E +        E   EI +LR+E EK   ERR       +LE  L Q++  
Sbjct: 41  KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR---NELQKLEKRLLQKEEN 97

Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
           +  K +  E+ +E+L+  E + +++    E+   E E LI +   +LE     S  +A  
Sbjct: 98  LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER---ISGLTA-- 152

Query: 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKE 720
           E+A +  ++ +      +++   +    I + E+  A  + D+K KE
Sbjct: 153 EEAKEILLEKV------EEEARHEAAVLIKEIEE-EAKEEADKKAKE 192

Length = 520

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 68/356 (19%)

Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
            E  +   +     E+ +        K R + +  L+R+ +        L  +      E
Sbjct: 605 AEMEDWLAERATAREQVRA-----YFKARAELDALLDRRARLRAALRAALKAVAIVLPGE 659

Query: 466 DDSEDETLNESAIEAQHKL---------KIQNLKQELSELEAKYKSLSEEHEDMSGKLK- 515
           + +E   L    +E   K          ++++ ++ L E E ++       E    +   
Sbjct: 660 ELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYD 719

Query: 516 --------------------ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP 555
                               EL +  ++ +    +L  ++A + R +   E   +   + 
Sbjct: 720 ALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEA 779

Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE------- 608
              + L +  DE     K++        +  EKL+EE        +E    L+       
Sbjct: 780 VAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLT 839

Query: 609 ---------QRDYLIAV--KTDGAEELQEKLDYMENKFQEESLVYER--LMSEK------ 649
                      + L+A   ++D   EL++++  +E              L++E       
Sbjct: 840 ALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPD 899

Query: 650 --ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH 703
                + +L  D+E    E N+ A +  A ++E+  +     D   T  +L+A+  
Sbjct: 900 ELPARLEELARDIEELEEELNELAQEVGAAKQELARM-----DGGSTAAELEAERE 950

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQ 736
           L+++IK L + L    +   +L+ +I         +K D    +K+   L+TK   +   
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSA 470

Query: 737 VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLE 796
             K +   QS    +K     E  ++ N EK L   E + K  ++E A    AQ   S E
Sbjct: 471 KQKDKQSMQSMEKRLK----SEADSRVNAEKQLA-EEKKRKKEEEETAARAAAQAAASRE 525

Query: 797 ASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLK 833
             A +  Q ++ LE ++  L+ +L+ +    R L+ +
Sbjct: 526 ECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKE 562

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
              Q+    + E L     E + +L    L++EL +LE +   L  E ED+   L+ L  
Sbjct: 64  APVQSVRPQKLEELQGELSELKQQL--SELQEELEDLEERIAELESELEDLKEDLQLLRE 121

Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMER--GAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
             + L  + + LE  + +L++ + E+ +    + E   EE++ L+  L   +E  +E  +
Sbjct: 122 LLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181

Query: 578 EIEQL 582
            +EQL
Sbjct: 182 LLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 65/337 (19%), Positives = 123/337 (36%), Gaps = 20/337 (5%)

Query: 444 QRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSL 503
           Q  F   QI  L   +K+       E   +     E   +L I +   EL+        +
Sbjct: 497 QIIFAVAQIVFLSAEIKSSSRAVREEKAAV-TDIPEELARLLITDELPELAVDLLVQSRI 555

Query: 504 SEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM--ERGAQTENKPEEVKYL 561
            +  + +   L +L      L  +    E  +A+     EE   E G   E  PE+   +
Sbjct: 556 RQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDI 615

Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
            S + + K+  ++      +L  +V +L EE+     R   L   LE +   ++      
Sbjct: 616 LSTMKDLKKLMQK----KAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFC-- 669

Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ-----SAHDEQA 676
             +Q      E + +E  L  E  +   + L  +L+A+LE +R E        +A  E A
Sbjct: 670 --VQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDA 727

Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE--DRKTKEKDIAELKTKCEELT 734
            ++  +    L   + +             + Y +      R+ KE+++A L+   + L 
Sbjct: 728 FREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALD 787

Query: 735 QQVTKLEADCQSYLNTIKNMENDER--STKHNQEKLL 769
           ++V +L A   +    I  +E        +  +E L 
Sbjct: 788 EEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLK 824

Length = 984

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 25/160 (15%)

Query: 457 TLVKNQQAEDDSEDETLNES--AIEAQHKLKIQNLKQELSELEAKYKSLSE------EHE 508
            L+K QQ+  +S   TL      I AQ    I+ L+ EL+ L+A+ ++L +      E  
Sbjct: 126 ELIKGQQSLFESRKSTLRAQLELILAQ----IKQLEAELAGLQAQLQALRQQLEVISEEL 181

Query: 509 DMSGKLKE--LTRENRDLVTKNKELEGKVAQLSRRVEEME------RGAQTENKPEEVKY 560
           +   KLKE  L      L     ELE + A+    +  +E      +    E + E  + 
Sbjct: 182 EARRKLKEKGLVSRLELL-----ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236

Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS 600
            ++  +E  EE  E    + +LR  + K  +  + L +RS
Sbjct: 237 EQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS 276

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 71/434 (16%), Positives = 155/434 (35%), Gaps = 102/434 (23%)

Query: 472 TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK----ELTRENRDLVTK 527
           TL E  IE +   +I+ LK+EL +LE K + L  E E    +L+    +   +    + K
Sbjct: 85  TLGEENIEIE--AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAK 142

Query: 528 NKELEGKVAQ---------LSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
             +     A            + ++E++      +    ++ LK+ +       K +   
Sbjct: 143 KYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELAL 202

Query: 579 IE---QLRSEVEKLSEERRLLTVRS----AELEYELEQRDYL---IAVKTDGA------- 621
           +        E+E+     + +   S    +EL   L   D++   +    +G        
Sbjct: 203 LTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQ 262

Query: 622 ---EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
              EE + +L   E  F EE         E    + +L    ES+               
Sbjct: 263 TITEERKAEL---EAHFDEEY-------QELIEQLEELIDKYESHI-------------- 298

Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
           ++       ++D +K   + K  + + +     ++E     EK++ +L+ K ++ +  + 
Sbjct: 299 EKALEELESILDTEKENSEFKLDVEELKALLEALEE---ILEKNLQKLEEKLKDPSTSIE 355

Query: 739 --KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLE 796
              +    +S  + I  +    R  +HN+        D LK  +++              
Sbjct: 356 LESITDLIESINDIIDAINELIR--EHNE------KIDNLKKEKNKA------------- 394

Query: 797 ASAATPSQYRKQLE-DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQ 855
                    +K+L    V  LK +++      + L+         IN+L+ ++++ + + 
Sbjct: 395 ---------KKKLWLHLVAELKEDIDAYQKEKKGLEKA-------INSLEKEIKQLEAEI 438

Query: 856 QQQRSPLKGLENQM 869
           +     +K LE Q+
Sbjct: 439 KALEKEIKELEKQL 452

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 32/231 (13%)

Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
           +  + Q++ ++ +   +  +       L+K++K+L       +  I  L+A++ +     
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSL-------ETEIASLEAQLIETAD-- 87

Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER-----STKHN 764
                D K   K IA+L  +   L  Q  +        L  ++    +       S +  
Sbjct: 88  -----DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142

Query: 765 QEK-LLKIYEDRLKAVQDELAEMKCAQLK--PSLEASAATPSQYRKQLEDQVNSLKAELE 821
           Q    L IY     A+    AE   A       L A  A  +  + +L   ++  +A+  
Sbjct: 143 QRSVRLAIYYG---ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ- 198

Query: 822 QRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
                   L   L ++ + +  L +++   Q++ ++ R+    L+N++A  
Sbjct: 199 ------AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243

Length = 420

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 29/158 (18%)

Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
           KKE   + +EE  +++ +  +  +E++ + +   ++L  Q EE L+R             
Sbjct: 49  KKEALLEAKEEVHKLRAELERELKERRNELQRLERRLL-QREETLDR------------- 94

Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLK-IQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
                +    D ++E L +   E  +K K +   ++EL EL A+ +   EE E +SG   
Sbjct: 95  -----KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR---EELERISG--- 143

Query: 516 ELTREN-RDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
            LT+E  ++++ +  E E +  + ++ ++E+E  A+ E
Sbjct: 144 -LTQEEAKEILLEEVEEEAR-HEAAKLIKEIEEEAKEE 179

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	932
KOG0243|consensus	1041		100.0
KOG4280|consensus	574		100.0
KOG0247|consensus	809		100.0
KOG0245|consensus	1221		100.0
KOG0240|consensus	607		100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0241|consensus	1714		100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
KOG0242|consensus	675		100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
KOG0246|consensus	676		100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
KOG0239|consensus	670		100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
KOG0244|consensus	913		100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG0933|consensus	1174		99.69
KOG0161|consensus	1930		99.67
KOG0161|consensus	1930		99.64
PRK02224	880	chromosome segregation protein; Provisional	99.58
PRK02224	880	chromosome segregation protein; Provisional	99.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.55
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.49
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.45
KOG0996|consensus	1293		99.44
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.41
PRK03918	880	chromosome segregation protein; Provisional	99.41
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.38
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.37
KOG0250|consensus	1074		99.37
KOG0250|consensus	1074		99.37
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.36
KOG4674|consensus	1822		99.36
KOG0996|consensus	1293		99.35
KOG4674|consensus	1822		99.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.35
PRK01156	895	chromosome segregation protein; Provisional	99.3
KOG0964|consensus	1200		99.3
KOG0964|consensus	1200		99.21
KOG0976|consensus	1265		99.19
KOG4643|consensus	1195		99.17
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.16
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.16
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.11
PRK04778	569	septation ring formation regulator EzrA; Provision	99.09
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.09
KOG0933|consensus	1174		99.08
KOG0976|consensus	1265		99.07
KOG0971|consensus	1243		99.06
KOG4643|consensus	1195		99.03
KOG0971|consensus	1243		99.02
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.9
PRK04778	569	septation ring formation regulator EzrA; Provision	98.89
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.88
KOG0977|consensus	546		98.87
KOG0994|consensus	1758		98.86
KOG4673|consensus	961		98.85
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.83
PRK04863	1486	mukB cell division protein MukB; Provisional	98.82
KOG0612|consensus	1317		98.81
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.81
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.8
KOG0612|consensus	1317		98.78
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.78
PRK04863	1486	mukB cell division protein MukB; Provisional	98.73
KOG0995|consensus	581		98.71
KOG0247|consensus	809		98.7
KOG0994|consensus	1758		98.68
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.67
KOG0995|consensus	581		98.66
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.62
KOG1029|consensus	1118		98.6
KOG4673|consensus	961		98.6
KOG1029|consensus	1118		98.48
KOG0018|consensus	1141		98.46
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.42
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.41
PHA02562	562	46 endonuclease subunit; Provisional	98.41
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.36
KOG0946|consensus	970		98.36
KOG0018|consensus	1141		98.34
KOG0963|consensus	629		98.33
PHA02562	562	46 endonuclease subunit; Provisional	98.32
COG4372	499	Uncharacterized protein conserved in bacteria with	98.3
KOG0946|consensus	970		98.28
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.18
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.09
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.03
KOG4593|consensus	716		98.01
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.99
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.97
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.86
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.86
KOG0978|consensus	698		97.84
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	97.83
KOG0980|consensus	980		97.83
KOG0980|consensus	980		97.8
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.78
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.7
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.68
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.62
KOG0962|consensus	1294		97.58
KOG0978|consensus	698		97.55
KOG0963|consensus	629		97.49
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.46
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.37
PF13514	1111	AAA_27: AAA domain	97.35
COG4477	570	EzrA Negative regulator of septation ring formatio	97.29
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.22
KOG1853|consensus	333		97.2
KOG0962|consensus	1294		97.2
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.17
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.16
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.09
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.04
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	96.94
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.89
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.85
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.83
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.81
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	96.68
KOG1899|consensus	861		96.55
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.33
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.3
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.25
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.22
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.1
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.08
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.95
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.94
KOG0979|consensus	1072		95.88
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.83
PF13514	1111	AAA_27: AAA domain	95.8
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.64
KOG2129|consensus	552		95.62
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.48
COG4477	570	EzrA Negative regulator of septation ring formatio	95.46
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.33
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.32
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.17
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.11
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	94.86
KOG0982|consensus	502		94.75
KOG4809|consensus	654		94.39
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.34
KOG1850|consensus	391		94.26
KOG4360|consensus	596		94.02
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.97
KOG0804|consensus	493		93.82
KOG0979|consensus	1072		93.8
KOG0804|consensus	493		93.78
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.69
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.62
PRK10869	553	recombination and repair protein; Provisional	93.25
KOG0992|consensus	613		93.11
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.96
KOG2129|consensus	552		92.85
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	92.84
PRK12377	248	putative replication protein; Provisional	92.83
KOG4677|consensus	554		92.62
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	92.3
PRK06893	229	DNA replication initiation factor; Validated	92.13
PF13166	712	AAA_13: AAA domain	92.03
PF13166	712	AAA_13: AAA domain	91.89
KOG1850|consensus	391		91.24
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	91.23
PRK06620	214	hypothetical protein; Validated	91.11
PRK06835	329	DNA replication protein DnaC; Validated	90.89
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	90.77
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	90.38
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	90.35
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	90.32
PRK07952	244	DNA replication protein DnaC; Validated	90.19
PRK08116	268	hypothetical protein; Validated	90.16
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	89.9
COG0593	408	DnaA ATPase involved in DNA replication initiation	89.72
COG2433	652	Uncharacterized conserved protein [Function unknow	89.7
PRK10869	553	recombination and repair protein; Provisional	89.56
COG4717	984	Uncharacterized conserved protein [Function unknow	89.4
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.28
KOG0982|consensus	502		88.85
PRK05642	234	DNA replication initiation factor; Validated	88.79
KOG2991|consensus	330		88.76
PRK09087	226	hypothetical protein; Validated	88.56
PLN02939	977	transferase, transferring glycosyl groups	88.47
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.72
PLN02939	977	transferase, transferring glycosyl groups	87.4
COG2433	652	Uncharacterized conserved protein [Function unknow	87.38
PRK06526	254	transposase; Provisional	87.34
PRK08084	235	DNA replication initiation factor; Provisional	87.3
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	87.04
KOG3859|consensus	406		87.02
PRK08181	269	transposase; Validated	86.76
PRK08939	306	primosomal protein DnaI; Reviewed	86.75
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	86.62
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	86.32
COG1484	254	DnaC DNA replication protein [DNA replication, rec	86.18
KOG4677|consensus	554		86.14
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	85.92
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	85.8
PRK14087	450	dnaA chromosomal replication initiation protein; P	85.73
PRK14086	617	dnaA chromosomal replication initiation protein; P	85.36
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	85.24
KOG4460|consensus	741		85.2
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	84.78
KOG2991|consensus	330		84.71
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	84.68
PRK08727	233	hypothetical protein; Validated	84.56
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	84.47
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	84.25
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	84.12
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	83.92
KOG0243|consensus	1041		83.89
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	83.77
PRK00149	450	dnaA chromosomal replication initiation protein; R	83.74
PRK08903	227	DnaA regulatory inactivator Hda; Validated	83.27
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	83.17
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.17
KOG1514|consensus	767		82.88
PRK14088	440	dnaA chromosomal replication initiation protein; P	82.82
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	82.66
PRK00411	394	cdc6 cell division control protein 6; Reviewed	82.18
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	81.17
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	81.15
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	81.09
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	80.77
PF13245	76	AAA_19: Part of AAA domain	80.19
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	80.15
COG3096	1480	MukB Uncharacterized protein involved in chromosom	80.08
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	80.02

>KOG0243|consensus

Probab=100.00  E-value=1.9e-65  Score=580.27  Aligned_cols=259  Identities=29%  Similarity=0.477  Sum_probs=236.7

Q ss_pred             ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +||||++..|.......+|.+.+ +.-|++...-  .  ...-.+.|+||.||||.+.|.+||+.+|.|+|..|+.||||
T Consensus        55 vRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~--~--sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNC  130 (1041)
T KOG0243|consen   55 VRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI--A--SKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNC  130 (1041)
T ss_pred             EEeCCCCchhhhcCCCeEEecCCCcceEEEeccc--c--cccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCc
Confidence            39999999997766667777777 4446665431  0  11124589999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      |||||||||+||||||.|                                                              
T Consensus       131 TIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~  210 (1041)
T KOG0243|consen  131 TIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKL  210 (1041)
T ss_pred             eEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccccccc
Confidence            999999999999999999                                                              


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEe--CCCCCcceeEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPGSEELIMMS  215 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~--~~~~~~~~~~s  215 (932)
                                         +.+++|+++.|++.+|..|...|++++|.+|..|||||+||+|+|+..  .++|......|
T Consensus       211 ~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~G  290 (1041)
T KOG0243|consen  211 RIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIG  290 (1041)
T ss_pred             ccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhc
Confidence                               889999999999999999999999999999999999999999999887  44556778999


Q ss_pred             EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994        216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK  295 (932)
Q Consensus       216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~  295 (932)
                      +|+||||||||...++|+.+.|.+|+|.||+||.+||+||.||+++.       .|||||+|||||||+|+|||.. +||
T Consensus       291 KLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-------~HIPYRESKLTRLLQDSLGGkT-KT~  362 (1041)
T KOG0243|consen  291 KLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-------GHIPYRESKLTRLLQDSLGGKT-KTC  362 (1041)
T ss_pred             ccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHHHhCCCc-eeE
Confidence            99999999999999999999999999999999999999999999965       9999999999999999999999 999


Q ss_pred             EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      ||+||||+..+++||++||.||.||+.|+|+|..|
T Consensus       363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevN  397 (1041)
T KOG0243|consen  363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVN  397 (1041)
T ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccc
Confidence            99999999999999999999999999999999865

>KOG4280|consensus

Probab=100.00  E-value=2.5e-64  Score=548.58  Aligned_cols=265  Identities=31%  Similarity=0.475  Sum_probs=239.5

Q ss_pred             ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +|+||++..+.......++.+.. ...+.+.+|...   ....++.|+||.||+++++|.+||..++.|+|++|+.|||+
T Consensus        11 vr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNg   87 (574)
T KOG4280|consen   11 VRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG---IEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNG   87 (574)
T ss_pred             EeecCCCchhhhhhhccccccccccceeeecCCccc---ccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCc
Confidence            48999999886666666666544 455667666521   12334569999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      ||||||||||||||||.|                                                              
T Consensus        88 tvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~  167 (574)
T KOG4280|consen   88 TVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPK  167 (574)
T ss_pred             eEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCC
Confidence            999999999999999999                                                              


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC--CCCCcceeEEEEEEEeCCCCcc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD--PGSEELIMMSSFDICDLAGAER  227 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~--~~~~~~~~~s~l~~vDLagse~  227 (932)
                             |+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|++..  .++....+.|+|+|||||||||
T Consensus       168 ~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr  247 (574)
T KOG4280|consen  168 CGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSER  247 (574)
T ss_pred             CceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhh
Confidence                   8999999999999999999999999999999999999999999999942  3346778999999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcH
Q psy16994        228 QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA  307 (932)
Q Consensus       228 ~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~  307 (932)
                      ..++++.|.|++||++||+||++||+||.+|+++.      +.|||||||+||+||+|+||||+ +|+||+||+|...+|
T Consensus       248 ~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~------~~HIPYRdSkLT~LLqdSLGGN~-kT~mianvsp~~~~~  320 (574)
T KOG4280|consen  248 QSKTGAEGERLKEATNINLSLSALGNVISALVDGS------KTHIPYRDSKLTRLLQDSLGGNS-KTTMIANVSPSSDNY  320 (574)
T ss_pred             hcccCccchhhhhhcccchhHHHHHHHHHHHhccc------cCCCCcchhHHHHHHHHHcCCCc-eEEEEEecCchhhhh
Confidence            99999999999999999999999999999999975      35999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994        308 EETVQVLKISSVARDLLTVAKPRHLPP  334 (932)
Q Consensus       308 ~et~~~l~~~~~~~~i~~~~~~~~~~~  334 (932)
                      +||++||+||+||+.|.+.|++|-.|.
T Consensus       321 ~ETlsTLrfA~Rak~I~nk~~ined~~  347 (574)
T KOG4280|consen  321 EETLSTLRFAQRAKAIKNKPVINEDPK  347 (574)
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCcc
Confidence            999999999999999999999875553

>KOG0247|consensus

Probab=100.00  E-value=1.2e-61  Score=522.25  Aligned_cols=264  Identities=38%  Similarity=0.632  Sum_probs=242.0

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCC-CccccC---CCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMK-DMKCSI---TDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNG  135 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g  135 (932)
                      +|+||+.+   .....+|+++.+..+|.+..|. ....+.   +.....|+|.+||+|.++|.+||+.++.|+|.+++.|
T Consensus        37 ~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkg  113 (809)
T KOG0247|consen   37 CRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKG  113 (809)
T ss_pred             EeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcc
Confidence            49999886   2345689999999999988665 333331   1223479999999999999999999999999999999


Q ss_pred             CCceeeecccccCCCcEEEec-----------------------------------------------------------
Q psy16994        136 EDALLFSFGTTNSGKTFTIQD-----------------------------------------------------------  156 (932)
Q Consensus       136 ~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------------  156 (932)
                      .|+.+|+||.|||||||||+|                                                           
T Consensus       114 qn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~  193 (809)
T KOG0247|consen  114 QNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRK  193 (809)
T ss_pred             cceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhcccccc
Confidence            999999999999999999999                                                           


Q ss_pred             ------------------------------------------------------------------------------ce
Q psy16994        157 ------------------------------------------------------------------------------LT  158 (932)
Q Consensus       157 ------------------------------------------------------------------------------l~  158 (932)
                                                                                                    ++
T Consensus       194 ~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~  273 (809)
T KOG0247|consen  194 STSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLT  273 (809)
T ss_pred             CcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeecccc
Confidence                                                                                          99


Q ss_pred             EEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEEeCCCCccccccccchhh
Q psy16994        159 YVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDICDLAGAERQKRAHTSGDR  237 (932)
Q Consensus       159 ~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~vDLagse~~~~~~~~~~~  237 (932)
                      +|.|.|.+||+.+|..|.++|++++|.+|..|||||+||+|.|.+.... +...+.+|.|.|||||||||..++++.|.|
T Consensus       274 ~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~R  353 (809)
T KOG0247|consen  274 EVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGER  353 (809)
T ss_pred             EEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHH
Confidence            9999999999999999999999999999999999999999999998655 456789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHH
Q psy16994        238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKIS  317 (932)
Q Consensus       238 ~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~  317 (932)
                      |+||++||.||++||+||.+|+.++.++  ...+|||||||||++|+.||.|.+ +++|||||+|.+.+|+|++++|+||
T Consensus       354 LrEagNINtSLmTLg~Cie~LR~nqk~k--s~~~VPyRdSKLThlfq~~f~G~g-ki~MIV~vnp~~e~YdEnl~vlkFa  430 (809)
T KOG0247|consen  354 LREAGNINTSLMTLRRCIDVLRENQKSK--SQKIVPYRDSKLTHLFKNYFDGKG-KIRMIVCVNPKAEDYDENLNVLKFA  430 (809)
T ss_pred             HHhhccccHHHHHHHHHHHHHHHHhhhh--ccccCcchHHHHHHHHHHhcCCCC-cEEEEEecCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999999665  569999999999999999999999 9999999999999999999999999


Q ss_pred             HHhcccccccCC
Q psy16994        318 SVARDLLTVAKP  329 (932)
Q Consensus       318 ~~~~~i~~~~~~  329 (932)
                      +.|..|.+.++.
T Consensus       431 eiaq~v~v~~~~  442 (809)
T KOG0247|consen  431 EIAQEVEVARPV  442 (809)
T ss_pred             HhcccccccCcc
Confidence            999999887655

>KOG0245|consensus

Probab=100.00  E-value=4.9e-63  Score=547.45  Aligned_cols=267  Identities=27%  Similarity=0.453  Sum_probs=237.1

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY  132 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~  132 (932)
                      +|||||+..|.......++.+.+..+-.++|+.+      .....|+||+.|+..       ++|..||..++.++|+++
T Consensus        10 VRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~------k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A   83 (1221)
T KOG0245|consen   10 VRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS------KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA   83 (1221)
T ss_pred             EEeccchhhhhhcccceEEEecCCceeeecCCCc------ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence            4899999999666444444444544444444322      122359999999765       689999999999999999


Q ss_pred             cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994        133 LNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------------  156 (932)
Q Consensus       133 ~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------------  156 (932)
                      +.|||+||||||||||||||||+|                                                        
T Consensus        84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg  163 (1221)
T KOG0245|consen   84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKG  163 (1221)
T ss_pred             hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999                                                        


Q ss_pred             ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEE
Q psy16994        157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSF  217 (932)
Q Consensus       157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l  217 (932)
                                      |+.+.|+|+.|+..+|..|++.|++++|.||..|||||+||+|.+.+....   +.....+|++
T Consensus       164 ~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKI  243 (1221)
T KOG0245|consen  164 GLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKI  243 (1221)
T ss_pred             CceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeee
Confidence                            899999999999999999999999999999999999999999999998332   2457789999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      +|||||||||+..+|+.|.||+||.+||+||.+||.||.||++.+.++..+..+||||||.|||||++.||||+ +|+||
T Consensus       244 sLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS-KTaMI  322 (1221)
T KOG0245|consen  244 SLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS-KTAMI  322 (1221)
T ss_pred             eEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc-hhhhh
Confidence            99999999999999999999999999999999999999999998865556778999999999999999999999 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP  333 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~  333 (932)
                      +++||.+-+|+|||+|||||.+||.|+|.+++|-.|
T Consensus       323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdp  358 (1221)
T KOG0245|consen  323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDP  358 (1221)
T ss_pred             hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCc
Confidence            999999999999999999999999999999988554

>KOG0240|consensus

Probab=100.00  E-value=1.2e-60  Score=502.10  Aligned_cols=260  Identities=28%  Similarity=0.421  Sum_probs=230.6

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML  129 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v  129 (932)
                      .+.|+|    |+||++..+...+...+..+.+ ..+|.+...        .....|.||.||.|+++|.+||..++.|+|
T Consensus         8 ~IkV~c----R~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~--------~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv   75 (607)
T KOG0240|consen    8 SIKVVC----RFRPLNGLENNLGSKFIDCFENGENTVVLETT--------KETKTYVFDRVFSPNATQEDVYEFAAKPIV   75 (607)
T ss_pred             ceEEEE----EeecCCchhhhcCCcCccCCCCCcceEEEecc--------cccccceeeeecCCCccHHHHHHHHHHHHH
Confidence            455666    9999999884333222222223 445554321        122589999999999999999999999999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      ++|+.|||+||||||||||||||||.|                                                     
T Consensus        76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k  155 (607)
T KOG0240|consen   76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK  155 (607)
T ss_pred             HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc
Confidence            999999999999999999999999999                                                     


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI  219 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~  219 (932)
                                       ++.+.|.++++++.+++.|..+|.++.|.+|.+|||||+||+|+|.+.+... .....|+|+|
T Consensus       156 ~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-~~~~~gkLyL  234 (607)
T KOG0240|consen  156 TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-KRKLSGKLYL  234 (607)
T ss_pred             CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-hhhccccEEE
Confidence                             8899999999999999999999999999999999999999999999987663 4567899999


Q ss_pred             EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994        220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN  299 (932)
Q Consensus       220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~  299 (932)
                      |||||||++.++|+.|.-+.|+.+||+||++||+||.+|+.+      +..||||||||||++|+|+||||+ +|.+|+|
T Consensus       235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g------~~shipYRDSKLTRILqdSLGGNs-RTtlIi~  307 (607)
T KOG0240|consen  235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG------PKSHIPYRDSKLTRILQDSLGGNS-RTTLIIC  307 (607)
T ss_pred             EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC------CCCCCcchhhHHHHHHHHHhCCCc-ceEEEEe
Confidence            999999999999999999999999999999999999999987      369999999999999999999999 9999999


Q ss_pred             cCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        300 VNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      ++|+.-+..||.+||+|+.+|+.|++.+..|
T Consensus       308 csPss~n~~ET~STl~fg~rak~ikN~v~~n  338 (607)
T KOG0240|consen  308 CSPSSLNEAETKSTLRFGNRAKTIKNTVWVN  338 (607)
T ss_pred             cCCccccccccccchhhccccccccchhhhh
Confidence            9999999999999999999999999877643

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=5.4e-56  Score=507.90  Aligned_cols=255  Identities=30%  Similarity=0.453  Sum_probs=227.3

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +||||+...+.  + ..++...++.++.+.            +..|.||+||++.++|.+||+.++.|+|+.+++|||+|
T Consensus       104 VRVRPl~~~E~--g-~~iV~~~s~dsl~I~------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT  168 (1320)
T PLN03188        104 VRMKPLNKGEE--G-EMIVQKMSNDSLTIN------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS  168 (1320)
T ss_pred             EEcCCCCCccC--C-CeeEEEcCCCeEEEe------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence            49999988752  1 234444455566552            34799999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      |||||||||||||||+|                                                               
T Consensus       169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp  248 (1320)
T PLN03188        169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP  248 (1320)
T ss_pred             eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence            99999999999999987                                                               


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCC---CCCcceeE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP---GSEELIMM  214 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~---~~~~~~~~  214 (932)
                                         |+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+...   .+......
T Consensus       249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~  328 (1320)
T PLN03188        249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT  328 (1320)
T ss_pred             ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE
Confidence                               67788999999999999999999999999999999999999999987632   23345678


Q ss_pred             EEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCee
Q psy16994        215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTV  294 (932)
Q Consensus       215 s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~  294 (932)
                      |+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+..+...  +..|||||+||||+||+++|||++ +|
T Consensus       329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~g--k~~HIPYRDSKLTrLLQDSLGGNS-KT  405 (1320)
T PLN03188        329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTG--KQRHIPYRDSRLTFLLQESLGGNA-KL  405 (1320)
T ss_pred             EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccC--CCCcCCCCcchHHHHHHHhcCCCc-eE
Confidence            999999999999999999999999999999999999999999999754222  458999999999999999999999 99


Q ss_pred             EEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCC
Q psy16994        295 KMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHL  332 (932)
Q Consensus       295 ~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~  332 (932)
                      +|||||+|...++.+|++||+||++|+.|++.|+.|..
T Consensus       406 vMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~  443 (1320)
T PLN03188        406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV  443 (1320)
T ss_pred             EEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence            99999999999999999999999999999999987754

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=2.5e-58  Score=498.63  Aligned_cols=265  Identities=40%  Similarity=0.636  Sum_probs=238.3

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCcccc-----CCCCCcceecceecCCCCChHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCS-----ITDTCNLYRFSNIYGPHTTQAELFQNIV  125 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~f~fd~v~~~~~~q~~v~~~~~  125 (932)
                      ++.|+.    ||||+.+.|......+|+.+.++.+|.+++|......     .......|.||+||+++++|.+||+.++
T Consensus         2 ~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~   77 (345)
T cd01368           2 PVKVYL----RVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTA   77 (345)
T ss_pred             CEEEEE----EeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHH
Confidence            445554    9999999987777888999999999999998732211     1234558999999999999999999999


Q ss_pred             HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994        126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------  156 (932)
Q Consensus       126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------  156 (932)
                      .|+|+++++|+|+||||||+|||||||||+|                                                 
T Consensus        78 ~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~  157 (345)
T cd01368          78 LPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKK  157 (345)
T ss_pred             HHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccC
Confidence            9999999999999999999999999999998                                                 


Q ss_pred             ------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC-------Ccc
Q psy16994        157 ------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-------EEL  211 (932)
Q Consensus       157 ------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~-------~~~  211 (932)
                                        ++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.....       ...
T Consensus       158 ~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~  237 (345)
T cd01368         158 RQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQ  237 (345)
T ss_pred             CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCc
Confidence                              7889999999999999999999999999999999999999999999875432       245


Q ss_pred             eeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCC
Q psy16994        212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLS  291 (932)
Q Consensus       212 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~  291 (932)
                      ...|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++... .+..|||||+||||+||+++|+|++
T Consensus       238 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~-~~~~~iPyR~SkLT~lL~~~l~g~s  316 (345)
T cd01368         238 ITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG-STNKMVPYRDSKLTHLFQNYFDGEG  316 (345)
T ss_pred             eEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc-CCCCcCCCcCCHHHHHHHHhcCCCC
Confidence            678999999999999999999999999999999999999999999999865321 1469999999999999999999999


Q ss_pred             CeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994        292 STVKMIVNVNASPAYAEETVQVLKISSVAR  321 (932)
Q Consensus       292 ~~~~~i~~~~p~~~~~~et~~~l~~~~~~~  321 (932)
                       +|+||+||+|+..+++||++||+||++|+
T Consensus       317 -~t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         317 -KARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             -eEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence             99999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=2.2e-58  Score=498.29  Aligned_cols=259  Identities=32%  Similarity=0.518  Sum_probs=236.0

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCcc-----ccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMK-----CSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN  134 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~  134 (932)
                      +||||+.+.|...+...|+.+.++.++.+.|+....     .........|.||+||++.++|.+||+.++.|+|+++++
T Consensus         6 vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~   85 (338)
T cd01370           6 VRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLN   85 (338)
T ss_pred             EEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHC
Confidence            399999999877778899999998888887765211     112234568999999999999999999999999999999


Q ss_pred             CCCceeeecccccCCCcEEEec----------------------------------------------------------
Q psy16994        135 GEDALLFSFGTTNSGKTFTIQD----------------------------------------------------------  156 (932)
Q Consensus       135 g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------------  156 (932)
                      |+|+||||||+|||||||||+|                                                          
T Consensus        86 G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed  165 (338)
T cd01370          86 GYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELRED  165 (338)
T ss_pred             CCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEc
Confidence            9999999999999999999998                                                          


Q ss_pred             ---------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEEEEeCCCC
Q psy16994        157 ---------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFDICDLAGA  225 (932)
Q Consensus       157 ---------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~~vDLags  225 (932)
                               ++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+...  ......|+|+|||||||
T Consensus       166 ~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGs  245 (338)
T cd01370         166 PNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGS  245 (338)
T ss_pred             CCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence                     8899999999999999999999999999999999999999999999986542  45578899999999999


Q ss_pred             ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcC
Q psy16994        226 ERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA  305 (932)
Q Consensus       226 e~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~  305 (932)
                      ||...+++.|.+++|+.+||+||++|++||.+|+.++.    ...|||||+||||+||+|+|||++ +|+||+||+|...
T Consensus       246 Er~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~----~~~~ipyR~SkLT~lL~d~Lggn~-~t~~I~~vsp~~~  320 (338)
T cd01370         246 ERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK----KNKHIPYRDSKLTRLLKDSLGGNC-KTVMIANISPSSS  320 (338)
T ss_pred             ccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC----CCCcCCCcCCHHHHHHHHhcCCCC-eEEEEEEeCCchh
Confidence            99999999999999999999999999999999998752    348999999999999999999999 9999999999999


Q ss_pred             cHHHHHHHHHHHHHhccc
Q psy16994        306 YAEETVQVLKISSVARDL  323 (932)
Q Consensus       306 ~~~et~~~l~~~~~~~~i  323 (932)
                      +++||++||+||++|+.|
T Consensus       321 ~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         321 HYEETHNTLKYANRAKNI  338 (338)
T ss_pred             hHHHHHHHHHHHHHhccC
Confidence            999999999999999976

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=5.9e-58  Score=494.79  Aligned_cols=250  Identities=32%  Similarity=0.479  Sum_probs=226.9

Q ss_pred             cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994         61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL  140 (932)
Q Consensus        61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i  140 (932)
                      ||||+...|.......|+...++.++.+.+.         ....|.||+||++.++|.+||+.++.|+|+++++|+|+||
T Consensus         8 RvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~---------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti   78 (337)
T cd01373           8 RIRPPNEIEADGGQGQCLKKLSSDTLVWHSH---------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI   78 (337)
T ss_pred             EcCcCChhhcccCCCeEEEEcCCCcEEeeCC---------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence            9999999887666777887766666665432         1358999999999999999999999999999999999999


Q ss_pred             eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994        141 FSFGTTNSGKTFTIQD----------------------------------------------------------------  156 (932)
Q Consensus       141 ~~~G~tgsGKt~t~~G----------------------------------------------------------------  156 (932)
                      ||||+|||||||||+|                                                                
T Consensus        79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~  158 (337)
T cd01373          79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN  158 (337)
T ss_pred             EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence            9999999999999987                                                                


Q ss_pred             ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC-CcceeEEEEEEE
Q psy16994        157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-EELIMMSSFDIC  220 (932)
Q Consensus       157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~-~~~~~~s~l~~v  220 (932)
                                     ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..... ......|+|+||
T Consensus       159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V  238 (337)
T cd01373         159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV  238 (337)
T ss_pred             ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence                           8889999999999999999999999999999999999999999998875432 234678999999


Q ss_pred             eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994        221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV  300 (932)
Q Consensus       221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~  300 (932)
                      |||||||...+++.|.+++|+.+||+||++|++||.+|+..+..   +..|||||+||||+||+++|||++ +|+||+||
T Consensus       239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~---~~~~ipyR~SkLT~lL~dsLggns-~t~~I~~v  314 (337)
T cd01373         239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG---KQRHVPYRDSKLTFLLRDSLGGNA-KTTIIANV  314 (337)
T ss_pred             ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC---CCCccCCcccHHHHHHHHhcCCCc-eEEEEEEE
Confidence            99999999999999999999999999999999999999875421   368999999999999999999999 99999999


Q ss_pred             CCCcCcHHHHHHHHHHHHHhccc
Q psy16994        301 NASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       301 ~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      +|...+++||++||+||.+|+.|
T Consensus       315 sP~~~~~~eTl~TL~fa~rak~I  337 (337)
T cd01373         315 SPSSKCFGETLSTLKFAQRAKLI  337 (337)
T ss_pred             CCCcccHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999976

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0241|consensus

Probab=100.00  E-value=2.4e-57  Score=492.38  Aligned_cols=273  Identities=27%  Similarity=0.425  Sum_probs=240.2

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY  132 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~  132 (932)
                      +|||||+..|.+-...+++.+...++|...||.......+..+++|.||++|++.       ++|..||..++..+|+++
T Consensus        10 VRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~na   89 (1714)
T KOG0241|consen   10 VRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENA   89 (1714)
T ss_pred             EEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHHH
Confidence            3899999999877666666665555544433332222223456799999999875       589999999999999999


Q ss_pred             cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994        133 LNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------------  156 (932)
Q Consensus       133 ~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------------  156 (932)
                      ++|||+||||||||||||||||.|                                                        
T Consensus        90 f~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtl  169 (1714)
T KOG0241|consen   90 FQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTL  169 (1714)
T ss_pred             hhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCccee
Confidence            999999999999999999999999                                                        


Q ss_pred             --------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEe--CCC-CCcceeEEEEEE
Q psy16994        157 --------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPG-SEELIMMSSFDI  219 (932)
Q Consensus       157 --------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~--~~~-~~~~~~~s~l~~  219 (932)
                                    |+.+.|+|++++-.+|..|.+.|++++|.+|..|||||+||.|.|.+.  +.. +.....+|+|.|
T Consensus       170 kVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklsl  249 (1714)
T KOG0241|consen  170 KVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSL  249 (1714)
T ss_pred             EEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeE
Confidence                          888999999999999999999999999999999999999999999988  332 344568899999


Q ss_pred             EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994        220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN  299 (932)
Q Consensus       220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~  299 (932)
                      ||||||||+.++++.|.|++|+++||+||.+||.||.+|+....+. ++.++||||||-||+||+|+||||| +|+||+|
T Consensus       250 VDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~k-gkdKfvPYrDSVLTwLLkD~LGGNs-rTvMiat  327 (1714)
T KOG0241|consen  250 VDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGK-GKDKFVPYRDSVLTWLLKDNLGGNS-RTVMIAT  327 (1714)
T ss_pred             EEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCC-CccccccchhHHHHHHHHhhcCCCc-eeEEEEE
Confidence            9999999999999999999999999999999999999999865332 4678999999999999999999999 9999999


Q ss_pred             cCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994        300 VNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP  334 (932)
Q Consensus       300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~  334 (932)
                      |||+.++|++|++|||||.+|++|+|..++|..|.
T Consensus       328 vSPaAdnyeeTlStLRYadrAkrIvN~avvNedpn  362 (1714)
T KOG0241|consen  328 VSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN  362 (1714)
T ss_pred             ecccccchHHHHHHHHHHHHHHHhhccccccCCch
Confidence            99999999999999999999999999999886554

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=3.3e-56  Score=486.38  Aligned_cols=268  Identities=29%  Similarity=0.463  Sum_probs=239.2

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY  132 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~  132 (932)
                      +|+||+...|...+...++.+.+ .++.+.+|.... ........|.||+||++.       ++|.+||+.++.|+|+++
T Consensus         7 vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~-~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~   84 (356)
T cd01365           7 VRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAAD-ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHA   84 (356)
T ss_pred             EEeCcCChhhhccCCceEEEECC-CEEEEEcCCccc-ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            39999999987666667777666 788887765211 112345589999999999       999999999999999999


Q ss_pred             cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994        133 LNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------------  156 (932)
Q Consensus       133 ~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------------  156 (932)
                      ++|+|+||||||+|||||||||+|                                                        
T Consensus        85 l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~  164 (356)
T cd01365          85 FEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGN  164 (356)
T ss_pred             hCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcC
Confidence            999999999999999999999998                                                        


Q ss_pred             ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEE
Q psy16994        157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFD  218 (932)
Q Consensus       157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~  218 (932)
                                     ++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....   .......|+|+
T Consensus       165 l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~  244 (356)
T cd01365         165 LKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKIS  244 (356)
T ss_pred             ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEE
Confidence                           788999999999999999999999999999999999999999999987543   24567889999


Q ss_pred             EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK-ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~-~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      |||||||||...++..|.+++|+..||+||++|++||.+|+.++... ..+..|||||+||||+||+++|||++ +++||
T Consensus       245 ~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s-~t~~I  323 (356)
T cd01365         245 LVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS-KTAMI  323 (356)
T ss_pred             eeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc-eEEEE
Confidence            99999999999999999999999999999999999999999865321 12569999999999999999999999 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      +||+|...+++||++||+||+++++|++.|+.+
T Consensus       324 ~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~  356 (356)
T cd01365         324 ATISPADINYEETLSTLRYADRAKKIVNVAVVN  356 (356)
T ss_pred             EEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence            999999999999999999999999999998753

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=6e-56  Score=476.68  Aligned_cols=249  Identities=26%  Similarity=0.397  Sum_probs=226.7

Q ss_pred             cccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      ||||+.+.+...+...++.+.++.++.+++|.. ...........|.||+||++.++|.+||+.++.|+|+.+++|+|+|
T Consensus         8 RvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~   87 (322)
T cd01367           8 RKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVAT   87 (322)
T ss_pred             EcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence            999999998766667778887777899988762 2222222356899999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      |||||+|||||||||+|                                                               
T Consensus        88 i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~  167 (322)
T cd01367          88 CFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIV  167 (322)
T ss_pred             EEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeC
Confidence            99999999999999997                                                               


Q ss_pred             -ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccc-cc
Q psy16994        157 -LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAH-TS  234 (932)
Q Consensus       157 -l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~-~~  234 (932)
                       ++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+...    ....|+|+||||||||+...++ ..
T Consensus       168 ~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~l~~vDLAGsE~~~~~~~~~  243 (322)
T cd01367         168 GLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----NKLLGKLSFIDLAGSERGADTSEHD  243 (322)
T ss_pred             CCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----CeeEEEEEEeecCCccccccccccc
Confidence             88999999999999999999999999999999999999999999998764    4578999999999999988765 46


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHH
Q psy16994        235 GDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVL  314 (932)
Q Consensus       235 ~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l  314 (932)
                      +.++.|+.+||+||++|++||.+|+.++       .|||||+|+||+||+++|+|++ +|+||+||+|...+++||++||
T Consensus       244 ~~~~~e~~~IN~SL~~L~~vi~al~~~~-------~~iPyRdSkLT~lL~~~L~g~~-~t~~I~~vsp~~~~~~eTl~tL  315 (322)
T cd01367         244 RQTRKEGAEINKSLLALKECIRALASNK-------AHVPFRGSKLTQVLRDSFIGNS-KTVMIATISPSASSCEHTLNTL  315 (322)
T ss_pred             hhhHHhHhHHhHHHHHHHHHHHHHhcCC-------CcCCCccCHHHHHHHHhhCCCC-eEEEEEEeCCchhhHHHHHHHH
Confidence            8999999999999999999999999854       8999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhc
Q psy16994        315 KISSVAR  321 (932)
Q Consensus       315 ~~~~~~~  321 (932)
                      +||++++
T Consensus       316 ~fa~r~k  322 (322)
T cd01367         316 RYADRVK  322 (322)
T ss_pred             HHHHhhC
Confidence            9999985

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>KOG0242|consensus

Probab=100.00  E-value=5.4e-57  Score=515.12  Aligned_cols=262  Identities=30%  Similarity=0.460  Sum_probs=229.0

Q ss_pred             cccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         59 KQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        59 ~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      .+||||+.+.+...+....+.+.++..+......+...  ......|.||+||++.++|.+||+..+.|+|.+++.|+|+
T Consensus        11 ~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~   88 (675)
T KOG0242|consen   11 SVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPE--KSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNA   88 (675)
T ss_pred             EEEeCCCCccccccCCccceEecCCceeEeeccccccc--cccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCccc
Confidence            34899999885333333334444444433322111000  0114579999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      +|||||+|||||||||.|                                                              
T Consensus        89 TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi  168 (675)
T KOG0242|consen   89 TVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGI  168 (675)
T ss_pred             ceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCE
Confidence            999999999999999999                                                              


Q ss_pred             ----ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccc
Q psy16994        157 ----LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAH  232 (932)
Q Consensus       157 ----l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~  232 (932)
                          |++++|.|++++..+|..|..+|+++.|.+|..|||||+||+|.|.+...... . ..|+|+|||||||||+..++
T Consensus       169 ~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~lIDLAGSERas~T~  246 (675)
T KOG0242|consen  169 VVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNLIDLAGSERASRTG  246 (675)
T ss_pred             EecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c-hhheehhhhhhhhhhhhhhh
Confidence                99999999999999999999999999999999999999999999999876544 2 77899999999999999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHH
Q psy16994        233 TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ  312 (932)
Q Consensus       233 ~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~  312 (932)
                      +.|.|++||++||+||++||+||.+|+.+.     ...|||||||||||||+++|||++ +|+|||||+|...+|++|.+
T Consensus       247 ~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~-----~~~hipYRDSKLTRiLq~sLgGn~-rt~~I~tisp~~~~~~eT~n  320 (675)
T KOG0242|consen  247 NEGVRLKEGAHINRSLLALGTVINKLSEGK-----RPRHIPYRDSKLTRLLQDSLGGNA-RTAIIATISPSSSHYEETKN  320 (675)
T ss_pred             ccceeccccchhhHHHHHHHHHHHHHcccc-----ccCCCCccccHHHHhchhhcCCCc-cEEEEEEeCchhhHHHHHHH
Confidence            999999999999999999999999999874     346999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhcccccccCCC
Q psy16994        313 VLKISSVARDLLTVAKPR  330 (932)
Q Consensus       313 ~l~~~~~~~~i~~~~~~~  330 (932)
                      ||+||++|++|.+.+..|
T Consensus       321 TL~fAsrak~i~~~~~~n  338 (675)
T KOG0242|consen  321 TLKFASRAKEITTKAQVN  338 (675)
T ss_pred             HHHHHHHhhhcccccccc
Confidence            999999999999998765

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=5e-55  Score=477.56  Aligned_cols=260  Identities=30%  Similarity=0.486  Sum_probs=235.5

Q ss_pred             ccccCCCcccccCCCCceEEEeCC-CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQ-KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +|+||+.+.|...+...++.+.++ .+|.+.++..    .......|.||+||++.++|.+||+.++.|+|+++++|+|+
T Consensus         8 vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~   83 (352)
T cd01364           8 VRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNC   83 (352)
T ss_pred             EEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence            399999999876667778888765 6677765431    12344589999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      ||||||+|||||||||+|                                                              
T Consensus        84 ~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~  163 (352)
T cd01364          84 TIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESDLN  163 (352)
T ss_pred             EEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccccC
Confidence            999999999999999977                                                              


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCcceeEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIMMS  215 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~~s  215 (932)
                                         ++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....  +......|
T Consensus       164 ~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s  243 (352)
T cd01364         164 KPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIG  243 (352)
T ss_pred             ccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEE
Confidence                               667899999999999999999999999999999999999999999987543  34556789


Q ss_pred             EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994        216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK  295 (932)
Q Consensus       216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~  295 (932)
                      +|+||||||||+..+.++.+.+++|+..||+||++|++||.+|..++       .|||||+|+||+||+++|||++ +|+
T Consensus       244 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-------~~vpyR~S~LT~lL~~~Lgg~s-~t~  315 (352)
T cd01364         244 KLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-------PHIPYRESKLTRLLQDSLGGRT-KTS  315 (352)
T ss_pred             EEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-------CCCCCcccHHHHHHHHhcCCCc-eEE
Confidence            99999999999999999999999999999999999999999999754       8999999999999999999999 999


Q ss_pred             EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994        296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~  331 (932)
                      ||+||+|...+++||++||+||++|++|++.|..|.
T Consensus       316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~  351 (352)
T cd01364         316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ  351 (352)
T ss_pred             EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence            999999999999999999999999999999998763

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=6.5e-55  Score=471.61  Aligned_cols=254  Identities=29%  Similarity=0.520  Sum_probs=230.8

Q ss_pred             ccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +||||+++.+...+...++.+ .+..+|.+.+|...   .......|.||+||++.++|.+||+.++.|+|+++++|+|+
T Consensus         7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~   83 (333)
T cd01371           7 VRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD---AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNG   83 (333)
T ss_pred             EEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc---ccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCce
Confidence            399999998866666667665 45677888877521   12345589999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      ||||||+|||||||||+|                                                              
T Consensus        84 ~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~  163 (333)
T cd01371          84 TIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERP  163 (333)
T ss_pred             eEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcC
Confidence            999999999999999999                                                              


Q ss_pred             --------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCcceeEEEEEEEeCCCCc
Q psy16994        157 --------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIMMSSFDICDLAGAE  226 (932)
Q Consensus       157 --------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~~s~l~~vDLagse  226 (932)
                              ++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.+..  +......|+|+||||||||
T Consensus       164 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsE  243 (333)
T cd01371         164 DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSE  243 (333)
T ss_pred             CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCC
Confidence                    888999999999999999999999999999999999999999999988553  3456778999999999999


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCc
Q psy16994        227 RQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY  306 (932)
Q Consensus       227 ~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~  306 (932)
                      |..+++..|.+++|+..||+||++|++||.+|..+.      ..|||||+|+||+||+++|+|++ +|+||+||+|...+
T Consensus       244 r~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~------~~~ipyR~SkLT~lL~~~l~g~s-~t~~I~~vsP~~~~  316 (333)
T cd01371         244 RQSKTGATGDRLKEATKINLSLSALGNVISALVDGK------STHIPYRDSKLTRLLQDSLGGNS-KTVMCANIGPADYN  316 (333)
T ss_pred             cccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC------CCcCCCccCHHHHHHHHhcCCCc-eEEEEEEeCCcccc
Confidence            999999999999999999999999999999999753      46999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q psy16994        307 AEETVQVLKISSVARDL  323 (932)
Q Consensus       307 ~~et~~~l~~~~~~~~i  323 (932)
                      +++|++||+||++||.|
T Consensus       317 ~~eTl~TL~fa~r~r~I  333 (333)
T cd01371         317 YDETLSTLRYANRAKNI  333 (333)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99999999999999976

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=1.3e-54  Score=469.59  Aligned_cols=248  Identities=30%  Similarity=0.470  Sum_probs=231.3

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +||||+...+...+...|+.+.++.+|.+.+|.        ....|.||+||+++++|.+||+.++.|+|+.+++|+|+|
T Consensus         8 vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~--------~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~   79 (325)
T cd01369           8 CRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD--------DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGT   79 (325)
T ss_pred             EEcCcCChhhhccCCceEEEEcCCCEEEecCCC--------CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccce
Confidence            399999998876777889999888899887653        345899999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      ||+||+|||||||||+|                                                               
T Consensus        80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~  159 (325)
T cd01369          80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKN  159 (325)
T ss_pred             EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCC
Confidence            99999999999999988                                                               


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.|+++++.+|..|..+|..++|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||+..
T Consensus       160 ~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~-~~~~~~s~l~~VDLAGsE~~~  238 (325)
T cd01369         160 RGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE-TGSKKRGKLFLVDLAGSEKVS  238 (325)
T ss_pred             CCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC-CCCEEEEEEEEEECCCCCccc
Confidence                   889999999999999999999999999999999999999999999988654 345688999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      ++++.|.+++|+..||+||++|++||.+|..++      ..|||||+|+||+||+++|+|++ +|+||+||+|...++++
T Consensus       239 ~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~------~~~vpyR~S~LT~lL~~~L~g~s-~t~~I~~vsp~~~~~~e  311 (325)
T cd01369         239 KTGAEGQTLEEAKKINKSLSALGNVINALTDGK------STHIPYRDSKLTRILQDSLGGNS-RTTLIICCSPSSYNESE  311 (325)
T ss_pred             ccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC------CCcCCCccCHHHHHHHHhcCCCC-eEEEEEEeCCccccHHH
Confidence            999999999999999999999999999999753      38999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy16994        310 TVQVLKISSVARDL  323 (932)
Q Consensus       310 t~~~l~~~~~~~~i  323 (932)
                      |++||+||++|+.|
T Consensus       312 Tl~TL~~a~r~~~i  325 (325)
T cd01369         312 TLSTLRFGARAKTI  325 (325)
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999999875

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=3e-54  Score=463.58  Aligned_cols=244  Identities=30%  Similarity=0.488  Sum_probs=222.7

Q ss_pred             ccccCCCcccccCCCCceEEEeCC-----CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQ-----KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN  134 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~  134 (932)
                      +||||+.+.+.  +...|+.+.+.     .++.+.+|..     ......|.||+||++.++|.+||+.++.|+|+.+++
T Consensus         6 vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~-----~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~   78 (319)
T cd01376           6 VRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN-----RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS   78 (319)
T ss_pred             EEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC-----CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence            49999988883  34567776554     4777777641     123458999999999999999999999999999999


Q ss_pred             CCCceeeecccccCCCcEEEec----------------------------------------------------------
Q psy16994        135 GEDALLFSFGTTNSGKTFTIQD----------------------------------------------------------  156 (932)
Q Consensus       135 g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------------  156 (932)
                      |+|+|||+||+|||||||||+|                                                          
T Consensus        79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~  158 (319)
T cd01376          79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD  158 (319)
T ss_pred             CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence            9999999999999999999998                                                          


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+....   ....|+|+||||||||+..
T Consensus       159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~s~l~~VDLAGsE~~~  235 (319)
T cd01376         159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN---IQLEGKLNLIDLAGSEDNR  235 (319)
T ss_pred             CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC---ceEEEEEEEEECCCCCccc
Confidence                   889999999999999999999999999999999999999999999987643   3678999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      .+++.|.+++|+..||+||++|++||.+|..+.       .|||||+|+||+||+++|+|++ +|+||+||+|...++.|
T Consensus       236 ~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-------~~ipyr~S~LT~lL~~~L~g~s-~t~~i~~vsp~~~~~~e  307 (319)
T cd01376         236 RTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-------PRIPYRESKLTRLLQDSLGGGS-RCIMVANIAPERSFYQD  307 (319)
T ss_pred             ccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-------CcCCCccCHHHHHHHHhcCCCc-cEEEEEEeCCchhhHHH
Confidence            999999999999999999999999999998754       8999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy16994        310 TVQVLKISSVAR  321 (932)
Q Consensus       310 t~~~l~~~~~~~  321 (932)
                      |++||+||++||
T Consensus       308 Tl~TL~fa~r~~  319 (319)
T cd01376         308 TLSTLNFASRSK  319 (319)
T ss_pred             HHHHHHHHHhhC
Confidence            999999999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>KOG0246|consensus

Probab=100.00  E-value=1.8e-54  Score=452.97  Aligned_cols=257  Identities=26%  Similarity=0.388  Sum_probs=230.6

Q ss_pred             cccCCCcccccCCCCceEEEeCCCeEEEcCCC-CccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMK-DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      |=||++..|......++++++..+.++++.|. .+.....-..+.|.||++|+..+++..||..++.|+|..+|+|--+|
T Consensus       215 RKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~AT  294 (676)
T KOG0246|consen  215 RKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMAT  294 (676)
T ss_pred             ecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCcee
Confidence            55999999977777889999999999999887 22222222345899999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      +||||||||||||||.|                                                               
T Consensus       295 CFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLE  374 (676)
T KOG0246|consen  295 CFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLE  374 (676)
T ss_pred             eeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccccceEEee
Confidence            99999999999999977                                                               


Q ss_pred             ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994        157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE  226 (932)
Q Consensus       157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse  226 (932)
                                |++-.|.++++++.+|+.|...|+.+.|..|..|||||+||.|.+....    ....+|+++||||||+|
T Consensus       375 Dg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~----~~k~hGKfSlIDLAGnE  450 (676)
T KOG0246|consen  375 DGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG----EFKLHGKFSLIDLAGNE  450 (676)
T ss_pred             cCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC----cceeEeEEEEEEccCCc
Confidence                      8899999999999999999999999999999999999999999997632    24578999999999999


Q ss_pred             cccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCC-CCCeeEEEEecCCCc
Q psy16994        227 RQKR-AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSG-LSSTVKMIVNVNASP  304 (932)
Q Consensus       227 ~~~~-~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g-~~~~~~~i~~~~p~~  304 (932)
                      |... +.+..++-.||..||+||++|..||++|..++       .|+|||.||||++|+|+|-| ++ +||||+||||..
T Consensus       451 RGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-------~H~PFR~SKLTqVLRDSFIGenS-rTcMIA~ISPg~  522 (676)
T KOG0246|consen  451 RGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-------SHLPFRGSKLTQVLRDSFIGENS-RTCMIATISPGI  522 (676)
T ss_pred             cCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-------CCCCchhhhHHHHHHHhhcCCCC-ceEEEEEeCCCc
Confidence            9654 45566777899999999999999999998865       99999999999999999999 66 999999999999


Q ss_pred             CcHHHHHHHHHHHHHhcccccccCC
Q psy16994        305 AYAEETVQVLKISSVARDLLTVAKP  329 (932)
Q Consensus       305 ~~~~et~~~l~~~~~~~~i~~~~~~  329 (932)
                      ..++.||+|||||.|++++.....+
T Consensus       523 ~ScEhTLNTLRYAdRVKeLsv~~~~  547 (676)
T KOG0246|consen  523 SSCEHTLNTLRYADRVKELSVDGGP  547 (676)
T ss_pred             chhhhhHHHHHHHHHHHhhcCCCCc
Confidence            9999999999999999998876654

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=9.9e-54  Score=461.17  Aligned_cols=248  Identities=29%  Similarity=0.489  Sum_probs=227.2

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +|+||+...+.. +..+++.+.++.+|.+.+|.        ....|.||+||+++++|.+||+.++.|+|+.+++|+|+|
T Consensus         6 vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~--------~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~   76 (321)
T cd01374           6 VRVRPLNPRESD-NEQVAWSIDNDNTISLEEST--------PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT   76 (321)
T ss_pred             EEcCcCCccccc-CCcceEEECCCCEEEEcCCC--------CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence            399999988863 34566777777788887652        345899999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      ||+||+|||||||||+|                                                               
T Consensus        77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~  156 (321)
T cd01374          77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVV  156 (321)
T ss_pred             EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEE
Confidence            99999999999999997                                                               


Q ss_pred             ---ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEEEEeCCCCcccccc
Q psy16994        157 ---LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFDICDLAGAERQKRA  231 (932)
Q Consensus       157 ---l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~~vDLagse~~~~~  231 (932)
                         ++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+.....  ......|+|+|||||||||....
T Consensus       157 v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~  236 (321)
T cd01374         157 VAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQT  236 (321)
T ss_pred             eCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccC
Confidence               8899999999999999999999999999999999999999999999986543  35678899999999999999988


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHH
Q psy16994        232 HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV  311 (932)
Q Consensus       232 ~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~  311 (932)
                      + .+.+++|+.+||+||++|++||.+|+.++     ...|||||+|+||+||+++|+|++ +++||+||+|...++++|+
T Consensus       237 ~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~-----~~~~vpyR~SkLT~lL~~~L~g~s-~t~~i~~vsp~~~~~~eTl  309 (321)
T cd01374         237 G-AGERRKEGSFINKSLLTLGTVISKLSEGK-----NSGHIPYRDSKLTRILQPSLSGNA-RTAIICTISPASSHVEETL  309 (321)
T ss_pred             C-CCccccccchhhhHHHHHHHHHHHHHhcC-----CCCcCCCcCCHHHHHHHHhcCCCc-eEEEEEEeCCccccHHHHH
Confidence            8 89999999999999999999999999875     258999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy16994        312 QVLKISSVARDL  323 (932)
Q Consensus       312 ~~l~~~~~~~~i  323 (932)
                      +||+||+++++|
T Consensus       310 ~TL~~a~r~~~i  321 (321)
T cd01374         310 NTLKFASRAKKV  321 (321)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=2.2e-53  Score=463.75  Aligned_cols=249  Identities=31%  Similarity=0.486  Sum_probs=227.1

Q ss_pred             ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +|+||++..+...+...|+.+.+ +..+.+.+           ...|.||+||+++++|.+||+.++.|+|+.+++|+|+
T Consensus         7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-----------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~   75 (341)
T cd01372           7 VRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-----------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNA   75 (341)
T ss_pred             EECCCCCchhcccCCCeEEEEeCCCCEEEecC-----------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcc
Confidence            39999999887666677776644 44555533           3479999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      |||+||+|||||||||+|                                                              
T Consensus        76 ~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l  155 (341)
T cd01372          76 TVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPI  155 (341)
T ss_pred             ceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCc
Confidence            999999999999999987                                                              


Q ss_pred             --------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---------CCccee
Q psy16994        157 --------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---------SEELIM  213 (932)
Q Consensus       157 --------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---------~~~~~~  213 (932)
                                    ++++.|.|+++++.+|..|..+|..++|.+|..|||||+||+|+|.+....         ......
T Consensus       156 ~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~  235 (341)
T cd01372         156 QIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTL  235 (341)
T ss_pred             eEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCcee
Confidence                          788999999999999999999999999999999999999999999998654         345578


Q ss_pred             EEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994        214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSST  293 (932)
Q Consensus       214 ~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~  293 (932)
                      .|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|..++.    +..|||||+|+||+||+++|||++ +
T Consensus       236 ~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~----~~~~ipyR~S~LT~lL~~~Lgg~s-~  310 (341)
T cd01372         236 TSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK----KGSHVPYRDSKLTRLLQDSLGGNS-H  310 (341)
T ss_pred             eEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC----CCCCCCCcccHHHHHHHHhcCCCc-e
Confidence            89999999999999999999999999999999999999999999998752    348999999999999999999999 9


Q ss_pred             eEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994        294 VKMIVNVNASPAYAEETVQVLKISSVARDLL  324 (932)
Q Consensus       294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~  324 (932)
                      |+||+||+|...++++|++||+||++|++|+
T Consensus       311 t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         311 TLMIACVSPADSNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999884

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>KOG0239|consensus

Probab=100.00  E-value=3.7e-54  Score=489.16  Aligned_cols=264  Identities=30%  Similarity=0.477  Sum_probs=229.8

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML  129 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v  129 (932)
                      ..+.|+|    ||||+.+.+........+...+...+.+..|....   ......|.||+||+|.++|.+||.. +.|+|
T Consensus       314 GnIRV~C----RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv  385 (670)
T KOG0239|consen  314 GNIRVFC----RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGD---KLEPQSFKFDKVFGPLASQDDVFEE-VSPLV  385 (670)
T ss_pred             cCceEEE----EecCCCccccccccccccccCCcceeEeecCCCCC---CCccccceeeeecCCcccHHHHHHH-HHHHH
Confidence            3445666    99999998865422222222222345555554211   1122269999999999999999998 89999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      .++++|||+||||||||||||||||.|                                                     
T Consensus       386 ~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~  465 (670)
T KOG0239|consen  386 QSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYV  465 (670)
T ss_pred             HHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccc
Confidence            999999999999999999999999999                                                     


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI  219 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~  219 (932)
                                       ++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+.. ......+.|+|
T Consensus       466 ~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~-t~~~~~g~l~L  544 (670)
T KOG0239|consen  466 GKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL-TGIRVTGVLNL  544 (670)
T ss_pred             cceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC-cccccccceeE
Confidence                             778999999999999999999999999999999999999999999988544 35567899999


Q ss_pred             EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994        220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN  299 (932)
Q Consensus       220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~  299 (932)
                      ||||||||+.+++.+|.|++|+.+||+||++||.||.+|+..       ..|||||+||||+||+++|||++ +|.|+|+
T Consensus       545 VDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-------~~HiPyRNSKLT~lLq~sLGG~s-KTLmfv~  616 (670)
T KOG0239|consen  545 VDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-------RSHIPYRNSKLTQLLQDSLGGDS-KTLMFVN  616 (670)
T ss_pred             eecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-------CCCCcccccchHHHhHhhhCCcc-ceeeEEE
Confidence            999999999999999999999999999999999999999984       49999999999999999999999 9999999


Q ss_pred             cCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        300 VNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      |+|..+++.||+.+|+||++++.+..++...
T Consensus       617 isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~  647 (670)
T KOG0239|consen  617 ISPAAAALFETLCSLRFATRVRSVELGSARK  647 (670)
T ss_pred             eCccHHHHhhhhhccchHHHhhceecccccc
Confidence            9999999999999999999999999888654

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=3.3e-53  Score=457.88  Aligned_cols=250  Identities=28%  Similarity=0.486  Sum_probs=223.1

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc-ccc--CCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM-KCS--ITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGE  136 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~  136 (932)
                      +|+||+...+    ...+....++.+|.++.|... ...  .......|.||+||++ ++|.+||+.++.|+|+++++|+
T Consensus         6 vRvRP~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~   80 (334)
T cd01375           6 VRVRPTPTKQ----GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGY   80 (334)
T ss_pred             EECCCCCCCC----CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCC
Confidence            3899988744    234555677888888888732 221  2233457999999999 9999999999999999999999


Q ss_pred             CceeeecccccCCCcEEEec------------------------------------------------------------
Q psy16994        137 DALLFSFGTTNSGKTFTIQD------------------------------------------------------------  156 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~t~~G------------------------------------------------------------  156 (932)
                      |+||||||+|||||||||+|                                                            
T Consensus        81 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~  160 (334)
T cd01375          81 NGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPA  160 (334)
T ss_pred             ccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCc
Confidence            99999999999999999988                                                            


Q ss_pred             ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEE
Q psy16994        157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDIC  220 (932)
Q Consensus       157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~v  220 (932)
                                     ++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... .......|+|+||
T Consensus       161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~V  240 (334)
T cd01375         161 VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLV  240 (334)
T ss_pred             eEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEE
Confidence                           788999999999999999999999999999999999999999999987322 2345678999999


Q ss_pred             eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994        221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV  300 (932)
Q Consensus       221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~  300 (932)
                      |||||||..+++..|.+++|+..||+||++|++||.+|+.++      ..|||||+|+||+||+++|||++ +|+||+||
T Consensus       241 DLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~------~~~ipyRdSkLT~lL~d~Lgg~~-~t~~I~~v  313 (334)
T cd01375         241 DLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA------RTHVPYRNSKLTHVLRDSLGGNC-KTVMLATI  313 (334)
T ss_pred             ECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC------CCCCCCcccHHHHHHHHhcCCCc-eEEEEEEe
Confidence            999999999999999999999999999999999999999753      48999999999999999999998 99999999


Q ss_pred             CCCcCcHHHHHHHHHHHHHhc
Q psy16994        301 NASPAYAEETVQVLKISSVAR  321 (932)
Q Consensus       301 ~p~~~~~~et~~~l~~~~~~~  321 (932)
                      +|...++.+|++||+||+|++
T Consensus       314 sp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         314 WVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             CCchhhHHHHHHHHHHHHhcC
Confidence            999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>KOG0244|consensus

Probab=100.00  E-value=8.8e-51  Score=453.18  Aligned_cols=253  Identities=29%  Similarity=0.424  Sum_probs=230.1

Q ss_pred             ccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994         62 LNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL  140 (932)
Q Consensus        62 vRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i  140 (932)
                      |||+...+...+...|+.+ ++...|++.           ...+|+||+||....+|.++|+.+|.|+++.+++|||+++
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-----------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatv   69 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-----------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATV   69 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeec-----------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhccee
Confidence            6899988877777888774 334444442           3347999999999999999999999999999999999999


Q ss_pred             eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994        141 FSFGTTNSGKTFTIQD----------------------------------------------------------------  156 (932)
Q Consensus       141 ~~~G~tgsGKt~t~~G----------------------------------------------------------------  156 (932)
                      +|||||||||||||.+                                                                
T Consensus        70 laygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~  149 (913)
T KOG0244|consen   70 LAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPK  149 (913)
T ss_pred             eeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccccC
Confidence            9999999999999976                                                                


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.+..++...|..|...|++++|.||..|||||+||+|.+.+....+.....+++|+|||||||||.+
T Consensus       150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k  229 (913)
T KOG0244|consen  150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK  229 (913)
T ss_pred             CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence                   6667788899999999999999999999999999999999999999875444455678999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      ++++.|+|++|+.+||.+|++||+||.+|...+     +..|||||+|+||+||+++||||+ .|+||+||||+..++.+
T Consensus       230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~k-----k~~~vpyRdSkltrlLQdslgGns-~tlmiaCiSpadsn~~E  303 (913)
T KOG0244|consen  230 KTKAEGDRLKEGININGGLLALGNVISALGEAK-----KGGEVPYRDSKLTRLLQDSLGGNS-DTLMIACISPADSNAQE  303 (913)
T ss_pred             ccccchhhhhhccCcchHHHHHHHHHHHHHhhh-----cCCcccchHHHHHHHHHHHhcCCc-ceeeeeecChhhhhhhh
Confidence            999999999999999999999999999999876     357999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCC
Q psy16994        310 TVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       310 t~~~l~~~~~~~~i~~~~~~~~  331 (932)
                      |++||+||.||+.|.+.|+.|.
T Consensus       304 tlnTl~ya~Rak~iknk~vvN~  325 (913)
T KOG0244|consen  304 TLNTLRYADRAKQIKNKPVVNQ  325 (913)
T ss_pred             HHHHHHHhhHHHHhcccccccc
Confidence            9999999999999999999885

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=1.9e-51  Score=446.09  Aligned_cols=249  Identities=33%  Similarity=0.515  Sum_probs=226.8

Q ss_pred             ccccCCCcccccCCCCceEEEeCC--CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQ--KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED  137 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~  137 (932)
                      +|+||+.+.+. ....+++.+.+.  .+|.+.++       ......|.||+||+++++|.+||+. +.|+|+.+++|+|
T Consensus         8 vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~   78 (329)
T cd01366           8 CRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG-------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYN   78 (329)
T ss_pred             EEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC-------CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCc
Confidence            39999988875 344567777765  67777553       1244589999999999999999998 6999999999999


Q ss_pred             ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994        138 ALLFSFGTTNSGKTFTIQD-------------------------------------------------------------  156 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~~G-------------------------------------------------------------  156 (932)
                      +|||+||+|||||||||+|                                                             
T Consensus        79 ~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~  158 (329)
T cd01366          79 VCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKH  158 (329)
T ss_pred             eEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEE
Confidence            9999999999999999998                                                             


Q ss_pred             ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994        157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE  226 (932)
Q Consensus       157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse  226 (932)
                                ++++.|.|++|+..++..|..+|..+.|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||
T Consensus       159 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-~~~~~~s~l~~VDLaGsE  237 (329)
T cd01366         159 DSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-TGEQTRGKLNLVDLAGSE  237 (329)
T ss_pred             CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-CCcEEEEEEEEEECCCCc
Confidence                      678999999999999999999999999999999999999999999998765 345688999999999999


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCc
Q psy16994        227 RQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY  306 (932)
Q Consensus       227 ~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~  306 (932)
                      +..+.++.|.+++|+..||+||++|++||.+|+.+       ..|||||+|+||+||+++|+|++ +++||+||+|...+
T Consensus       238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-------~~~ipyr~S~LT~lL~~~l~g~~-~t~~i~~vsp~~~~  309 (329)
T cd01366         238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-------DSHVPYRNSKLTYLLQDSLGGNS-KTLMFVNISPLESN  309 (329)
T ss_pred             ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-------CCcCCCcccHhHHHHHHhcCCCc-eEEEEEEeCCchhh
Confidence            99999999999999999999999999999999985       39999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccc
Q psy16994        307 AEETVQVLKISSVARDLLTV  326 (932)
Q Consensus       307 ~~et~~~l~~~~~~~~i~~~  326 (932)
                      ++||++||+||++++.|+++
T Consensus       310 ~~etl~tL~~a~~~~~i~~~  329 (329)
T cd01366         310 LSETLCSLRFASRVRSVELG  329 (329)
T ss_pred             HHHHHHHHHHHHHhhcccCC
Confidence            99999999999999999763

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=9.4e-51  Score=442.88  Aligned_cols=259  Identities=33%  Similarity=0.512  Sum_probs=235.7

Q ss_pred             ccccCCCcccccCCCCceEEEeCC--CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQ--KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED  137 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~  137 (932)
                      +||||+...+......+++.+.+.  .+|.+.++.     .......|.||+||+++++|.+||+.++.|+|+.++.|+|
T Consensus         6 vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~   80 (335)
T smart00129        6 VRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK-----NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN   80 (335)
T ss_pred             EEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC-----CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence            499999998876667778887655  467766553     1234458999999999999999999999999999999999


Q ss_pred             ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994        138 ALLFSFGTTNSGKTFTIQD-------------------------------------------------------------  156 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~~G-------------------------------------------------------------  156 (932)
                      +|||+||++||||||||+|                                                             
T Consensus        81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~  160 (335)
T smart00129       81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG  160 (335)
T ss_pred             eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence            9999999999999999997                                                             


Q ss_pred             ------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCC-CCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 ------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP-GSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 ------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~-~~~~~~~~s~l~~vDLagse~~~  229 (932)
                            ++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+... ........|+|+||||||+|+..
T Consensus       161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~  240 (335)
T smart00129      161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERAS  240 (335)
T ss_pred             CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccc
Confidence                  88999999999999999999999999999999999999999999997722 23456789999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      ..++.|.+++|+..||+||.+|++||.+|+.++     +..++|||+|+||+||+++|+|++ +++||+||+|...++++
T Consensus       241 ~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~-----~~~~ip~r~S~LT~lL~~~L~g~~-~~~~i~~vsp~~~~~~e  314 (335)
T smart00129      241 KTGAEGDRLKEAGNINKSLSALGNVINALADGQ-----KSRHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSLSNLEE  314 (335)
T ss_pred             cccChhHHHHhhchhhhHHHHHHHHHHHHHhcC-----CCCCCCCcCcHhHHHHHHHcCCCC-eEEEEEEcCCCccchHH
Confidence            999999999999999999999999999999864     458999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCC
Q psy16994        310 TVQVLKISSVARDLLTVAKP  329 (932)
Q Consensus       310 t~~~l~~~~~~~~i~~~~~~  329 (932)
                      |++||+||+++++|++.|+.
T Consensus       315 Tl~tL~~a~~~~~i~~~p~~  334 (335)
T smart00129      315 TLSTLRFASRAKEIKNKAIV  334 (335)
T ss_pred             HHHHHHHHHHHhhcccCCCc
Confidence            99999999999999999864

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=1.3e-49  Score=433.64  Aligned_cols=252  Identities=35%  Similarity=0.560  Sum_probs=229.1

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +|+||+...+ ..+...++.+.++.+|.+.+|...   .......|.||+||+++++|.+||+.++.|+|++++.|+|+|
T Consensus         6 vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~   81 (328)
T cd00106           6 VRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG---RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGT   81 (328)
T ss_pred             EEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc---cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCcee
Confidence            3999988766 334567888888899999887632   223456899999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      ||+||++||||||||+|                                                               
T Consensus        82 i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~  161 (328)
T cd00106          82 IFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPK  161 (328)
T ss_pred             EEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCC
Confidence            99999999999999999                                                               


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc-ceeEEEEEEEeCCCCccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE-LIMMSSFDICDLAGAERQ  228 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~-~~~~s~l~~vDLagse~~  228 (932)
                             ++++.|.|+++++.+|..|..+|..++|..|..|||||+||+|+|.+.+..... ....|+|+||||||+|+.
T Consensus       162 ~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~  241 (328)
T cd00106         162 GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERA  241 (328)
T ss_pred             CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcc
Confidence                   678999999999999999999999999999999999999999999998665321 478899999999999999


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHH
Q psy16994        229 KRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAE  308 (932)
Q Consensus       229 ~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~  308 (932)
                      ...++.+.++.|+..||+||++|++||.+|..++     +..|||||+|+||+||+++|+|++ +++||+||+|...++.
T Consensus       242 ~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~-----~~~~ip~r~SkLT~lL~~~l~g~~-~t~~I~~vsp~~~~~~  315 (328)
T cd00106         242 KKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ-----KKKHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSSENYD  315 (328)
T ss_pred             cccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC-----CCCcCCCcCcHHHHHHHHhcCCCC-eEEEEEEeCCchhhHH
Confidence            9999999999999999999999999999999864     258999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy16994        309 ETVQVLKISSVAR  321 (932)
Q Consensus       309 et~~~l~~~~~~~  321 (932)
                      +|++||+||++|+
T Consensus       316 eTl~tL~~a~r~~  328 (328)
T cd00106         316 ETLSTLRFASRAK  328 (328)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=5.5e-51  Score=445.68  Aligned_cols=255  Identities=33%  Similarity=0.546  Sum_probs=219.2

Q ss_pred             cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994         61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL  140 (932)
Q Consensus        61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i  140 (932)
                      ||||+++.|.......++.+.+.....  +..............|.||+||+++++|.+||+.++.|+|+.+++|+|+||
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i   78 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQ--NKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI   78 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEE--EEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCcccc--ccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence            789999999666666666554311000  000111112233458999999999999999999999999999999999999


Q ss_pred             eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994        141 FSFGTTNSGKTFTIQD----------------------------------------------------------------  156 (932)
Q Consensus       141 ~~~G~tgsGKt~t~~G----------------------------------------------------------------  156 (932)
                      |+||+|||||||||+|                                                                
T Consensus        79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~  158 (335)
T PF00225_consen   79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR  158 (335)
T ss_dssp             EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred             EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence            9999999999999999                                                                


Q ss_pred             ------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc---ceeEEEEEEEe
Q psy16994        157 ------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE---LIMMSSFDICD  221 (932)
Q Consensus       157 ------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~---~~~~s~l~~vD  221 (932)
                                  ++++.|.|+++++.+|..|..+|..+.|.+|..|||||+||+|+|.+.......   ....|+|+|||
T Consensus       159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD  238 (335)
T PF00225_consen  159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD  238 (335)
T ss_dssp             EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred             eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence                        778999999999999999999999999999999999999999999999655433   26889999999


Q ss_pred             CCCCcccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994        222 LAGAERQKRAHT-SGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV  300 (932)
Q Consensus       222 Lagse~~~~~~~-~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~  300 (932)
                      |||+|+....+. .+.+++|+..||+||++|++||.+|+.+.     ...+||||+|+||+||+++|+|++ +++||+||
T Consensus       239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~-----~~~~vpyr~SkLT~lL~d~l~g~s-~t~~I~~v  312 (335)
T PF00225_consen  239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGS-----KQSHVPYRDSKLTRLLKDSLGGNS-KTILIVCV  312 (335)
T ss_dssp             EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----STSSSCGGGSHHHHHTGGGTSSSS-EEEEEEEE
T ss_pred             cccccccccccccccccccccceecchhhhhhhhHhhhhccc-----cchhhhhhcccccceecccccccc-cceeEEEc
Confidence            999999998886 48889999999999999999999999872     359999999999999999999998 99999999


Q ss_pred             CCCcCcHHHHHHHHHHHHHhccc
Q psy16994        301 NASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       301 ~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      +|...+|++|++||+||+++++|
T Consensus       313 sp~~~~~~eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  313 SPSSEDYEETLSTLRFASRAREI  335 (335)
T ss_dssp             -SBGGGHHHHHHHHHHHHHHTTE
T ss_pred             CCccccHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999986

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-43  Score=403.84  Aligned_cols=223  Identities=35%  Similarity=0.564  Sum_probs=209.7

Q ss_pred             CcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------
Q psy16994        102 CNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------  156 (932)
Q Consensus       102 ~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------  156 (932)
                      ...|.||+||+|.++|.+||..++.|+++.++.||||||||||+|||||||||.|                         
T Consensus        55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~  134 (568)
T COG5059          55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT  134 (568)
T ss_pred             ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence            3479999999999999999999999999999999999999999999999999999                         


Q ss_pred             ------------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCc
Q psy16994        157 ------------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSH  194 (932)
Q Consensus       157 ------------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh  194 (932)
                                                                ++.+.|.++++++.+|..|..+|+++.|.+|..|||||
T Consensus       135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh  214 (568)
T COG5059         135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH  214 (568)
T ss_pred             cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence                                                      88899999999999999999999999999999999999


Q ss_pred             cEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccC
Q psy16994        195 CVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF  274 (932)
Q Consensus       195 ~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~  274 (932)
                      +||+++|.+.+..... ...++|+||||||||++..++..+.+++|+..||+||.+||+||.+|....     +..||||
T Consensus       215 si~~i~~~~~~~~~~~-~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~-----~~~~ipy  288 (568)
T COG5059         215 SIFQIELASKNKVSGT-SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKK-----KSGHIPY  288 (568)
T ss_pred             EEEEEEEEEeccCccc-eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccc-----cCCccch
Confidence            9999999999766332 233799999999999999999999999999999999999999999999742     4599999


Q ss_pred             CCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994        275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       275 r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~  331 (932)
                      |+|+||++|+++|||++ +|+|||||+|...++++|.+||+||++|+.|.+.+..+.
T Consensus       289 ReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~  344 (568)
T COG5059         289 RESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS  344 (568)
T ss_pred             hhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence            99999999999999999 999999999999999999999999999999999887653

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=100.00  E-value=5e-43  Score=346.17  Aligned_cols=174  Identities=31%  Similarity=0.515  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc---eEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccE
Q psy16994        120 LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL---TYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCV  196 (932)
Q Consensus       120 v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl---~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i  196 (932)
                      ||+.++ |+|..+++|+|+|||+||+|||||||||+|-   .-+.-...++++.++..|..+|.++.|.+|..|||||+|
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i   86 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSV   86 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHHHHhhccccccccccCCCCccCcccEE
Confidence            999988 9999999999999999999999999999982   233345567799999999999999999999999999999


Q ss_pred             EEEEEEEeCCC--CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccC
Q psy16994        197 FSIKLVKVDPG--SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF  274 (932)
Q Consensus       197 ~~i~v~~~~~~--~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~  274 (932)
                      |+|+|.+.+..  +......|+|+||||||||+...++..+.+++|+..||+||++|++||.+|+.++       .+|||
T Consensus        87 ~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-------~~vpy  159 (186)
T cd01363          87 FRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-------SHVPY  159 (186)
T ss_pred             EEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-------CCCCC
Confidence            99999988543  2355678999999999999999999999999999999999999999999999754       89999


Q ss_pred             CCCchHHhhhhhcCCCCCeeEEEEecCC
Q psy16994        275 RDSKLTQIFQRSLSGLSSTVKMIVNVNA  302 (932)
Q Consensus       275 r~s~LT~ll~~~l~g~~~~~~~i~~~~p  302 (932)
                      |+||||+||+|+|+|++ +|+||+||+|
T Consensus       160 r~SkLT~lL~~~L~g~~-~t~~i~~vsP  186 (186)
T cd01363         160 RESKLTRLLQDSLGGNS-RTLMVACISP  186 (186)
T ss_pred             cccHHHHHHHHhcCCCC-eEEEEEEeCc
Confidence            99999999999999999 9999999998

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG0933|consensus

Probab=99.69  E-value=1.3e-10  Score=131.76  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             ChHHHHHHHH----HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy16994        377 DPYETIRLLE----ARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE--DLERQRKFYKT  450 (932)
Q Consensus       377 ~~~el~~~~e----~~l~~~e~~~~~~~e~~~ree~~~~~~E~~~~l~e~~~~~~~~l~~e~~~~ee--~~~~~~e~l~~  450 (932)
                      .|.|+++++|    ++|| +.++..+...++.++.   ++.|++..|.+.+.|...+|+.++..+.+  .....++.+.+
T Consensus       157 Kp~EILsMvEEAAGTrmy-e~kKe~A~ktiekKet---KlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R  232 (1174)
T KOG0933|consen  157 KPSEILSMVEEAAGTRMY-ENKKEAAEKTIEKKET---KLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSR  232 (1174)
T ss_pred             CcHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999    8999 6666999999999999   99999999999999999999999999988  34566778888


Q ss_pred             HHHHHHhHhh
Q psy16994        451 QIETLMTLVK  460 (932)
Q Consensus       451 ~~~~~~~~~~  460 (932)
                      .+.++.|...
T Consensus       233 ~~ia~eY~~~  242 (1174)
T KOG0933|consen  233 ICIAYEYLQA  242 (1174)
T ss_pred             HHHHHHHHHH
Confidence            8888877543

>KOG0161|consensus

Probab=99.67  E-value=1.3e-10  Score=145.00  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             CCCCceeeecccccCCCcE
Q psy16994        134 NGEDALLFSFGTTNSGKTF  152 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~  152 (932)
                      ++.|.+|+..|-+|+|||-
T Consensus       165 ~renQSiLiTGESGAGKTe  183 (1930)
T KOG0161|consen  165 DRENQSILITGESGAGKTE  183 (1930)
T ss_pred             cCCCceEeeecCCCCCcch
Confidence            6889999999999999995

>KOG0161|consensus

Probab=99.64  E-value=1.1e-09  Score=136.82  Aligned_cols=76  Identities=25%  Similarity=0.331  Sum_probs=47.7

Q ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994        796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       796 ~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~  871 (932)
                      ...+..+......+..+++.++.+++........+...+.+++..++.|..++++.+..+..+...+..+..++..
T Consensus      1286 e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1286 EAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQ 1361 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555566666667777777766666677777777777777777777777666666555555544444443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.58  E-value=2.2e-09  Score=133.91  Aligned_cols=34  Identities=12%  Similarity=0.274  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q psy16994        842 NNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID  875 (932)
Q Consensus       842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~  875 (932)
                      ..+...+.........+...+..++..+..+...
T Consensus       649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~  682 (880)
T PRK02224        649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAE  682 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555556666666653

>PRK02224 chromosome segregation protein; Provisional

Probab=99.58  E-value=5.2e-09  Score=130.52  Aligned_cols=15  Identities=27%  Similarity=0.348  Sum_probs=11.5

Q ss_pred             eeeecccccCCCcEE
Q psy16994        139 LLFSFGTTNSGKTFT  153 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t  153 (932)
                      ..+-+|++|||||..
T Consensus        25 ~~~i~G~Ng~GKSti   39 (880)
T PRK02224         25 VTVIHGVNGSGKSSL   39 (880)
T ss_pred             eEEEECCCCCCHHHH
Confidence            334489999999874

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.55  E-value=1.3e-10  Score=151.13  Aligned_cols=64  Identities=9%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             hHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q psy16994        793 PSLEASAATPSQYRKQLEDQVNSLK----AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRS  860 (932)
Q Consensus       793 ~~L~~~l~~~~~~~~~l~~e~~~l~----~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~  860 (932)
                      ..++.++..++.    ..++|..+.    .+++++..+..+|...+..+...+..+...+...-....+...
T Consensus       968 ~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~ 1035 (1179)
T TIGR02168       968 EEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035 (1179)
T ss_pred             HHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555    333444445    7888999999999999999999999999998888755444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.49  E-value=1.5e-09  Score=141.08  Aligned_cols=16  Identities=19%  Similarity=0.272  Sum_probs=11.8

Q ss_pred             eeeecccccCCCcEEE
Q psy16994        139 LLFSFGTTNSGKTFTI  154 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~  154 (932)
                      +.+-+||+|||||..|
T Consensus        25 ~~~i~G~NGsGKS~ll   40 (1179)
T TIGR02168        25 ITGIVGPNGCGKSNIV   40 (1179)
T ss_pred             cEEEECCCCCChhHHH
Confidence            4456799999998744

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.47  E-value=1.4e-09  Score=141.10  Aligned_cols=58  Identities=9%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994        793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK  850 (932)
Q Consensus       793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~  850 (932)
                      ..+..++..+...+.....+|+.+..++.++..+..++...+..+...+..|+.....
T Consensus       961 ~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~ 1018 (1164)
T TIGR02169       961 QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018 (1164)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666667778899999999999999999999998888888888865544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.45  E-value=5.6e-07  Score=114.20  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=13.5

Q ss_pred             HhcCCCCceeeecccccCCCcEE
Q psy16994        131 RYLNGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       131 ~~~~g~~~~i~~~G~tgsGKt~t  153 (932)
                      .+..|+++.|   ||.|||||-.
T Consensus        21 ~f~~~~t~Iv---GPNGSGKSNI   40 (1163)
T COG1196          21 NFSPGFTAIV---GPNGSGKSNI   40 (1163)
T ss_pred             ecCCCCeEEE---CCCCCchHHH
Confidence            3345666543   9999999753

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.45  E-value=5.3e-09  Score=132.34  Aligned_cols=59  Identities=14%  Similarity=0.132  Sum_probs=47.3

Q ss_pred             hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16994        793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS  851 (932)
Q Consensus       793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~  851 (932)
                      ..++.++..+...+....++|+.+..+++.+..+..++...+..+.+.+.+++......
T Consensus       952 ~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196         952 ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666777777788899999999999999999999988888888888887766544

>KOG0996|consensus

Probab=99.44  E-value=8.9e-07  Score=103.22  Aligned_cols=11  Identities=36%  Similarity=0.549  Sum_probs=9.1

Q ss_pred             cccccCCCcEE
Q psy16994        143 FGTTNSGKTFT  153 (932)
Q Consensus       143 ~G~tgsGKt~t  153 (932)
                      .||.|||||-.
T Consensus       114 vGPNGSGKSNV  124 (1293)
T KOG0996|consen  114 VGPNGSGKSNV  124 (1293)
T ss_pred             ECCCCCCchHH
Confidence            49999999853

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.41  E-value=6.1e-08  Score=106.80  Aligned_cols=86  Identities=33%  Similarity=0.456  Sum_probs=44.1

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        510 MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL  589 (932)
Q Consensus       510 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l  589 (932)
                      ++.++.....+...+......++.+...++.++..++         ..+.....+...+......+......+..+...+
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~---------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L  211 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE---------AELEQEEEEMEQLKQQQKELTESSEELKEERESL  211 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666666666666665555         5555555555555444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q psy16994        590 SEERRLLTVRSAELE  604 (932)
Q Consensus       590 ~~~~~~l~~~l~~l~  604 (932)
                      ..+.......+..+.
T Consensus       212 ~~q~~e~~~ri~~LE  226 (546)
T PF07888_consen  212 KEQLAEARQRIRELE  226 (546)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK03918 chromosome segregation protein; Provisional

Probab=99.41  E-value=5.5e-07  Score=112.78  Aligned_cols=14  Identities=29%  Similarity=0.515  Sum_probs=11.1

Q ss_pred             eecccccCCCcEEE
Q psy16994        141 FSFGTTNSGKTFTI  154 (932)
Q Consensus       141 ~~~G~tgsGKt~t~  154 (932)
                      +-+|++|||||..|
T Consensus        27 ~i~G~nG~GKStil   40 (880)
T PRK03918         27 LIIGQNGSGKSSIL   40 (880)
T ss_pred             EEEcCCCCCHHHHH
Confidence            36799999998743

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.40  E-value=1.7e-08  Score=130.90  Aligned_cols=13  Identities=31%  Similarity=0.332  Sum_probs=10.3

Q ss_pred             eecccccCCCcEE
Q psy16994        141 FSFGTTNSGKTFT  153 (932)
Q Consensus       141 ~~~G~tgsGKt~t  153 (932)
                      +-+|++|||||..
T Consensus        27 ~i~G~NGsGKS~i   39 (1164)
T TIGR02169        27 VISGPNGSGKSNI   39 (1164)
T ss_pred             EEECCCCCCHHHH
Confidence            3479999999863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=99.38  E-value=2.3e-07  Score=119.12  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        730 CEELTQQVTKLEADCQSYLNTIKNMENDERST  761 (932)
Q Consensus       730 ~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l  761 (932)
                      +..++.++..+...+..+..++..+......+
T Consensus       986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l 1017 (1311)
T TIGR00606       986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWL 1017 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.37  E-value=1.8e-07  Score=103.14  Aligned_cols=89  Identities=20%  Similarity=0.243  Sum_probs=45.7

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL  582 (932)
Q Consensus       503 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l  582 (932)
                      ...+...+......++.+...++..+..++..+...+.....+.                .....+......+..+...+
T Consensus       148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~----------------~~~kel~~~~e~l~~E~~~L  211 (546)
T PF07888_consen  148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK----------------QQQKELTESSEELKEERESL  211 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555554444444                44444444444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        583 RSEVEKLSEERRLLTVRSAELEYEL  607 (932)
Q Consensus       583 ~~~l~~l~~~~~~l~~~l~~l~~~l  607 (932)
                      ..+..++...+..++..+..+....
T Consensus       212 ~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  212 KEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555665555555444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250|consensus

Probab=99.37  E-value=1.6e-06  Score=101.29  Aligned_cols=46  Identities=33%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             eecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCC--------CCccEEEEEEEEe
Q psy16994        141 FSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSS--------RSHCVFSIKLVKV  204 (932)
Q Consensus       141 ~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ss--------rsh~i~~i~v~~~  204 (932)
                      |..|+.|||||-               ++..|..|...|..+.   |..||        -+-+.++|++...
T Consensus        66 fI~G~NGSGKSA---------------IltAl~lglG~rAs~t---nRgsslK~lIK~G~~~A~IsItL~N~  119 (1074)
T KOG0250|consen   66 FIVGNNGSGKSA---------------ILTALTLGLGGRASAT---NRGSSLKDLIKDGCSSAKISITLSNS  119 (1074)
T ss_pred             EeecCCCCcHHH---------------HHHHHHHhhccccccc---cchhhHHHHHhCCCcceEEEEEEecC
Confidence            778999999954               5555666666664432   22222        1455677777654

>KOG0250|consensus

Probab=99.37  E-value=8.4e-07  Score=103.61  Aligned_cols=55  Identities=11%  Similarity=0.172  Sum_probs=25.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994        803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ  857 (932)
Q Consensus       803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~  857 (932)
                      ......+..++..+..+..............+......+..+..++....+.++.
T Consensus       754 ~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s  808 (1074)
T KOG0250|consen  754 EAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS  808 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            3334444444444444444444444444444444444455555555544444444

>TIGR00606 rad50 rad50

Probab=99.36  E-value=5.3e-07  Score=115.88  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL  596 (932)
Q Consensus       558 ~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l  596 (932)
                      +..++.++......+..+...+..+..+...+..++..+
T Consensus       824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4674|consensus

Probab=99.36  E-value=1.6e-06  Score=107.20  Aligned_cols=13  Identities=23%  Similarity=0.603  Sum_probs=8.2

Q ss_pred             HHHhhcCCCCCCC
Q psy16994         18 NILFNSLGPYLDK   30 (932)
Q Consensus        18 dviFnSi~~~~~~   30 (932)
                      |+.|..|.++++.
T Consensus        11 ~~~~~~~~~~V~~   23 (1822)
T KOG4674|consen   11 DVLSEDISPLVDV   23 (1822)
T ss_pred             hcchhhccccccc
Confidence            4677777666643

>KOG0996|consensus

Probab=99.35  E-value=3.4e-06  Score=98.53  Aligned_cols=70  Identities=13%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhcc
Q psy16994        807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDR  876 (932)
Q Consensus       807 ~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~  876 (932)
                      ..+...+..+..+++.+.....++.......+..+....+-+.++......+...+..++.....+..+|
T Consensus       945 ~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~r 1014 (1293)
T KOG0996|consen  945 SELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAER 1014 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444444444444444444444555555555555555555555555556666666666555543

>KOG4674|consensus

Probab=99.35  E-value=4.1e-06  Score=103.74  Aligned_cols=51  Identities=12%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        734 TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELA  784 (932)
Q Consensus       734 ~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~  784 (932)
                      ...+.....++..++..+.....-+......+.+....++.+++....++.
T Consensus       918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~t  968 (1822)
T KOG4674|consen  918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKIT  968 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.35  E-value=2.4e-06  Score=100.01  Aligned_cols=11  Identities=27%  Similarity=0.335  Sum_probs=4.1

Q ss_pred             hHHHHHHHHHH
Q psy16994        838 GEMINNLKAQM  848 (932)
Q Consensus       838 ~~~~~~L~~~l  848 (932)
                      .+.+..|..++
T Consensus       527 rek~~kl~~ql  537 (775)
T PF10174_consen  527 REKHEKLEKQL  537 (775)
T ss_pred             hhHHHHHHHHH
Confidence            33333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.35  E-value=4.1e-06  Score=98.09  Aligned_cols=49  Identities=20%  Similarity=0.301  Sum_probs=22.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994        802 PSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK  850 (932)
Q Consensus       802 ~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~  850 (932)
                      +..............+.+++.+...+..+......++..|..|...+++
T Consensus       553 Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek  601 (775)
T PF10174_consen  553 LEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEK  601 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444555555554433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK01156 chromosome segregation protein; Provisional

Probab=99.30  E-value=7.1e-06  Score=102.53  Aligned_cols=15  Identities=20%  Similarity=0.299  Sum_probs=12.2

Q ss_pred             eeeecccccCCCcEE
Q psy16994        139 LLFSFGTTNSGKTFT  153 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t  153 (932)
                      +.+-+|++|||||..
T Consensus        25 i~~I~G~NGsGKSsi   39 (895)
T PRK01156         25 INIITGKNGAGKSSI   39 (895)
T ss_pred             eEEEECCCCCCHHHH
Confidence            556789999999864

>KOG0964|consensus

Probab=99.30  E-value=8.8e-06  Score=93.06  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             cccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeC
Q psy16994        143 FGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDL  222 (932)
Q Consensus       143 ~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDL  222 (932)
                      .|..|||||-.++..+.|-+.-+..+..-=+.|+-+-..+++-       -|+.+-|.....+.  ..+...+.+.++-.
T Consensus        31 VGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~V-------~sA~VEIvF~nsdn--r~~~~k~Ev~lrRt  101 (1200)
T KOG0964|consen   31 VGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAMV-------MSASVEIVFDNSDN--RLPRGKSEVSLRRT  101 (1200)
T ss_pred             ecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcce-------EEEEEEEEEeCccc--ccCCCCCeEEEEEe
Confidence            4999999998777777666655544422222222222122211       24445554433322  22223344555544


Q ss_pred             CCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy16994        223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG  263 (932)
Q Consensus       223 agse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~  263 (932)
                      .|--            +.--.++.-+.+=|.|+.-|-+.+-
T Consensus       102 VGlK------------KDeY~lD~k~Vtk~evvnLLESAGF  130 (1200)
T KOG0964|consen  102 VGLK------------KDEYFLDNKMVTKGEVVNLLESAGF  130 (1200)
T ss_pred             eccc------------chhhhcccccccHHHHHHHHHhcCc
Confidence            4432            1233455555566778888877653

>KOG0964|consensus

Probab=99.21  E-value=2.3e-05  Score=89.76  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=15.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994        834 LLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM  869 (932)
Q Consensus       834 l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l  869 (932)
                      +..+...|..|..++..+....-+.......|+..+
T Consensus       787 l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l  822 (1200)
T KOG0964|consen  787 LSKLNKEINKLSVKLRALREERIDIETRKTALEANL  822 (1200)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444344444444444

>KOG0976|consensus

Probab=99.19  E-value=7.2e-06  Score=91.22  Aligned_cols=31  Identities=6%  Similarity=0.139  Sum_probs=12.3

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        795 LEASAATPSQYRKQLEDQVNSLKAELEQRHN  825 (932)
Q Consensus       795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~  825 (932)
                      +++.+.....++..|.....++...++.+.+
T Consensus       370 i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  370 IQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444344444444433334333333333

>KOG4643|consensus

Probab=99.17  E-value=1.1e-05  Score=92.55  Aligned_cols=29  Identities=31%  Similarity=0.389  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKL  589 (932)
Q Consensus       561 l~~~l~~~~~~l~~l~~~i~~l~~~l~~l  589 (932)
                      ++.+++++...-.-+.+..+-++.++..+
T Consensus       262 ykdRveelkedN~vLleekeMLeeQLq~l  290 (1195)
T KOG4643|consen  262 YKDRVEELKEDNRVLLEEKEMLEEQLQKL  290 (1195)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            44444444444333433444444444333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.16  E-value=0.0001  Score=93.90  Aligned_cols=9  Identities=11%  Similarity=0.014  Sum_probs=3.9

Q ss_pred             CCCceeeec
Q psy16994        135 GEDALLFSF  143 (932)
Q Consensus       135 g~~~~i~~~  143 (932)
                      |.-|||++|
T Consensus        79 G~~~~vvl~   87 (1201)
T PF12128_consen   79 GQLCCVVLS   87 (1201)
T ss_pred             CceeEEEEe
Confidence            433444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.16  E-value=8.6e-05  Score=94.65  Aligned_cols=15  Identities=33%  Similarity=0.266  Sum_probs=11.1

Q ss_pred             eeeecccccCCCcEE
Q psy16994        139 LLFSFGTTNSGKTFT  153 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t  153 (932)
                      -+-..|..|+|||+.
T Consensus        19 ~t~i~GTNG~GKTTl   33 (1201)
T PF12128_consen   19 HTHICGTNGVGKTTL   33 (1201)
T ss_pred             ceeeecCCCCcHHHH
Confidence            344569999999874

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.11  E-value=6.7e-05  Score=86.37  Aligned_cols=15  Identities=20%  Similarity=0.328  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHHH
Q psy16994        739 KLEADCQSYLNTIKN  753 (932)
Q Consensus       739 ~l~~~l~~l~~~l~~  753 (932)
                      .+...+..++.++..
T Consensus       306 ~L~~~vesL~~ELe~  320 (522)
T PF05701_consen  306 SLRASVESLRSELEK  320 (522)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=99.09  E-value=4e-05  Score=89.63  Aligned_cols=49  Identities=8%  Similarity=0.109  Sum_probs=30.7

Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16994        794 SLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN  842 (932)
Q Consensus       794 ~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~  842 (932)
                      .+..++....-....+..++......++.+..+..++......++..|.
T Consensus       459 ~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq  507 (569)
T PRK04778        459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ  507 (569)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666522233444447777777777777777777777666665554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.09  E-value=1.5e-11  Score=148.24  Aligned_cols=362  Identities=19%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL  564 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~  564 (932)
                      .|+.+......++.....+..++..+...+..+.......+.....++..+..+..++....         ..+..+...
T Consensus       139 qle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e---------r~~~el~~~  209 (859)
T PF01576_consen  139 QLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE---------RQRNELTEQ  209 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444455555544444444         444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16994        565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER  644 (932)
Q Consensus       565 l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~  644 (932)
                      ...+..++.++...+......+..+......+..++.+++..+.........+...+..+..++..+...+..    -..
T Consensus       210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee----E~e  285 (859)
T PF01576_consen  210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE----EEE  285 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh----hhh
Confidence            4444444444444444444444444444444444444444444444433334444444444444444444433    223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        645 LMSEKENLISQLKADLESNRAESNQSAHD-EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI  723 (932)
Q Consensus       645 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~-~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l  723 (932)
                      ....+...+..+..++..+...+..-... ...+...-..+...+..+...+......+..++.....+..++.++...+
T Consensus       286 ~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eL  365 (859)
T PF01576_consen  286 AKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSEL  365 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333321111 11222222223333333444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhcCch
Q psy16994        724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS  803 (932)
Q Consensus       724 ~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~~~L~~~l~~~~  803 (932)
                      .........+.+....+...+..+......+...+..+......           +..++-.+....  +.+...+..+.
T Consensus       366 e~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-----------~~te~~~Lk~~l--ee~~e~~e~le  432 (859)
T PF01576_consen  366 EKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-----------LETELFKLKNEL--EELQEQLEELE  432 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHhhh--HHHHHHHHHHH
Confidence            44444433444333333333333333333333333332222222           111222222211  34556666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994        804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI  872 (932)
Q Consensus       804 ~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l  872 (932)
                      ..+..|..++.++...+......+.+|...+..++..+..+..+|++....++..+.....++..|..+
T Consensus       433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~  501 (859)
T PF01576_consen  433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL  501 (859)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888888887777778888888888888888888888888888887777777777777654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0933|consensus

Probab=99.08  E-value=1.4e-05  Score=91.85  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE  732 (932)
Q Consensus       653 ~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~  732 (932)
                      ...+.-+.+.+..++...+..+..+...+..+..++..+...+...+.....+..++......+.....++..+-.....
T Consensus       817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~  896 (1174)
T KOG0933|consen  817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK  896 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence            33333333333333333333333333333333333333333333333333444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK  767 (932)
Q Consensus       733 l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~  767 (932)
                      +..+.......+..+..++..+..+.......+..
T Consensus       897 ~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~  931 (1174)
T KOG0933|consen  897 CLSEKSDGELERKKLEHEVTKLESEKANARKEVEK  931 (1174)
T ss_pred             HHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHH
Confidence            44444444444444444444444444444333333

>KOG0976|consensus

Probab=99.07  E-value=7.6e-05  Score=83.36  Aligned_cols=21  Identities=5%  Similarity=0.245  Sum_probs=10.4

Q ss_pred             HHHHHHHhccchhHHHHHHHH
Q psy16994        851 SQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       851 ~~~~~~~~~~~l~~le~~l~~  871 (932)
                      +.........++..+++++.+
T Consensus       488 lKaen~rqakkiefmkEeiQe  508 (1265)
T KOG0976|consen  488 LKAENERQAKKIEFMKEEIQE  508 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333455566666655

>KOG0971|consensus

Probab=99.06  E-value=9.9e-06  Score=91.56  Aligned_cols=12  Identities=8%  Similarity=0.210  Sum_probs=7.2

Q ss_pred             ceecceecCCCC
Q psy16994        104 LYRFSNIYGPHT  115 (932)
Q Consensus       104 ~f~fd~v~~~~~  115 (932)
                      .|.+|.-||.++
T Consensus        57 YF~Cd~ncG~FV   68 (1243)
T KOG0971|consen   57 YFECDENCGVFV   68 (1243)
T ss_pred             eEecCCCcceEe
Confidence            566666666554

>KOG4643|consensus

Probab=99.03  E-value=0.00015  Score=83.72  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy16994        483 KLKIQNLKQELSELEAKYKSLSEEHEDMS  511 (932)
Q Consensus       483 k~~i~~l~~~l~~l~~~l~~l~~~l~~~~  511 (932)
                      +..+.+++.....|.....-|++++..+.
T Consensus       263 kdRveelkedN~vLleekeMLeeQLq~lr  291 (1195)
T KOG4643|consen  263 KDRVEELKEDNRVLLEEKEMLEEQLQKLR  291 (1195)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            33444554444444444444444444433

>KOG0971|consensus

Probab=99.02  E-value=1.5e-05  Score=90.24  Aligned_cols=20  Identities=20%  Similarity=0.419  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHH
Q psy16994        489 LKQELSELEAKYKSLSEEHE  508 (932)
Q Consensus       489 l~~~l~~l~~~l~~l~~~l~  508 (932)
                      |..++.+|.++++.+..+..
T Consensus       229 Lr~QvrdLtEkLetlR~kR~  248 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRA  248 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            55555555555555544433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.90  E-value=0.00042  Score=80.12  Aligned_cols=17  Identities=24%  Similarity=0.149  Sum_probs=9.6

Q ss_pred             ccccccccccccccccc
Q psy16994        915 GLAENVNLITPRRIFFL  931 (932)
Q Consensus       915 ~~~~~~~~~~~~~~~~~  931 (932)
                      ..-++||+...|-|-|+
T Consensus       587 npq~~p~L~~~pcipff  603 (617)
T PF15070_consen  587 NPQEHPGLGSNPCIPFF  603 (617)
T ss_pred             CcccCCCCCCCCcccce
Confidence            33446666666666443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.89  E-value=0.00053  Score=80.34  Aligned_cols=9  Identities=22%  Similarity=0.412  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy16994        532 EGKVAQLSR  540 (932)
Q Consensus       532 ~~~~~~l~~  540 (932)
                      +..+..++.
T Consensus       171 e~~l~~~e~  179 (569)
T PRK04778        171 EKQLENLEE  179 (569)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.88  E-value=0.00036  Score=80.87  Aligned_cols=66  Identities=12%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994        805 YRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA  870 (932)
Q Consensus       805 ~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~  870 (932)
                      ....+..++..+..........+.+|+..+........+-...|...++.+......|..|+.++-
T Consensus       399 e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC  464 (717)
T PF09730_consen  399 EVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC  464 (717)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443333344566666666666666666666666666666666666666666664

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0977|consensus

Probab=98.87  E-value=3e-05  Score=85.95  Aligned_cols=74  Identities=16%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994        793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM  869 (932)
Q Consensus       793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l  869 (932)
                      ..|..++.++...+..|...+++|+-++....   +-.+..|..++..+..|..++..+-.+++.+-+---.|..++
T Consensus       306 ~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~---r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI  379 (546)
T KOG0977|consen  306 SGLRAKLSELESRNSALEKRIEDLEYQLDEDQ---RSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEI  379 (546)
T ss_pred             cchhhhhccccccChhHHHHHHHHHhhhhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHH
Confidence            34777888888888888888888877765432   233444555555566666666555555555544333444444

>KOG0994|consensus

Probab=98.86  E-value=0.00062  Score=79.36  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994        819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI  872 (932)
Q Consensus       819 el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l  872 (932)
                      +.+.+.....+|-.+-..+-..+++|+..+...+..+......|..|+++++.+
T Consensus      1690 rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence            344444555555555555556667777777777777777777777888877764

>KOG4673|consensus

Probab=98.85  E-value=0.00042  Score=76.53  Aligned_cols=49  Identities=10%  Similarity=0.097  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16994        806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ  854 (932)
Q Consensus       806 ~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~  854 (932)
                      ...+...+..-+.+......+...++..+.+++++++.|..++.+....
T Consensus       713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~  761 (961)
T KOG4673|consen  713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK  761 (961)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555556666666667777777766666555544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.83  E-value=5.6e-10  Score=134.86  Aligned_cols=87  Identities=16%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy16994        795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINI  874 (932)
Q Consensus       795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~  874 (932)
                      |...+..+......+..+...|..++..+...+.+....+..++.....|+.++.++...+.+++..+...+....++..
T Consensus       417 Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~  496 (859)
T PF01576_consen  417 LKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQV  496 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333343334444444444444444444444444444455566666666666666666666667777666666666666


Q ss_pred             ccCCCCC
Q psy16994        875 DRSPSGE  881 (932)
Q Consensus       875 ~~~~~~~  881 (932)
                      .....+.
T Consensus       497 el~~~r~  503 (859)
T PF01576_consen  497 ELQQLRQ  503 (859)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            6554433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.82  E-value=0.00073  Score=85.98  Aligned_cols=19  Identities=21%  Similarity=0.235  Sum_probs=14.8

Q ss_pred             ceeeecccccCCCcEEEec
Q psy16994        138 ALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~~G  156 (932)
                      +++.-+|++|+|||++|-.
T Consensus        28 ~~~~l~G~NGaGKSTll~a   46 (1486)
T PRK04863         28 LVTTLSGGNGAGKSTTMAA   46 (1486)
T ss_pred             CeEEEECCCCCCHHHHHHH
Confidence            3566679999999987654

>KOG0612|consensus

Probab=98.81  E-value=0.00053  Score=81.28  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994        828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQ  857 (932)
Q Consensus       828 ~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~  857 (932)
                      .+++++...+...+..++.+++....++..
T Consensus       789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~  818 (1317)
T KOG0612|consen  789 KMLEKQLKKLLDELAELKKQLEEENAQLRG  818 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344444444555555555555544444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.81  E-value=0.0017  Score=80.98  Aligned_cols=53  Identities=15%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccc--cccccCccCCCCCccEEEEEEE
Q psy16994        137 DALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLS--VAPTELNHRSSRSHCVFSIKLV  202 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~--~~~t~~n~~ssrsh~i~~i~v~  202 (932)
                      ++..+-+|+||||||.            .=||+.+--.|...|.  .....+....+++ +.|.+.+.
T Consensus        25 ~gi~lI~G~nGsGKSS------------IldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~   79 (908)
T COG0419          25 SGIFLIVGPNGAGKSS------------ILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE   79 (908)
T ss_pred             CCeEEEECCCCCcHHH------------HHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence            4455668999999975            3455555555555542  2222333333445 55555554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.80  E-value=0.00016  Score=78.45  Aligned_cols=12  Identities=42%  Similarity=0.506  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHh
Q psy16994        489 LKQELSELEAKY  500 (932)
Q Consensus       489 l~~~l~~l~~~l  500 (932)
                      |+.+...|+.++
T Consensus        23 LE~~N~~Le~~i   34 (312)
T PF00038_consen   23 LEQENKRLESEI   34 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHH
Confidence            333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612|consensus

Probab=98.78  E-value=0.00057  Score=81.03  Aligned_cols=9  Identities=11%  Similarity=0.453  Sum_probs=3.7

Q ss_pred             EEEEEEeCC
Q psy16994        215 SSFDICDLA  223 (932)
Q Consensus       215 s~l~~vDLa  223 (932)
                      |.|-|.|.+
T Consensus       212 GHikLADFG  220 (1317)
T KOG0612|consen  212 GHIKLADFG  220 (1317)
T ss_pred             CcEeeccch
Confidence            334444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.78  E-value=0.0008  Score=77.88  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994        842 NNLKAQMEKSQQQQQQQRSPLKGLENQMAKI  872 (932)
Q Consensus       842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l  872 (932)
                      ..|...|++++..+-++-.....|...+.+|
T Consensus       410 ~aLq~amekLq~~f~~~~~e~adl~e~~e~l  440 (617)
T PF15070_consen  410 QALQEAMEKLQSRFMDLMEEKADLKERVEKL  440 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3455556666666665555555555555554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.73  E-value=0.00056  Score=87.01  Aligned_cols=32  Identities=9%  Similarity=0.217  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q psy16994        487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELT  518 (932)
Q Consensus       487 ~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~  518 (932)
                      ......+...+..+..+...+..+...+..++
T Consensus       296 ~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLE  327 (1486)
T PRK04863        296 YTSRRQLAAEQYRLVEMARELAELNEAESDLE  327 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>KOG0995|consensus

Probab=98.71  E-value=0.0011  Score=72.98  Aligned_cols=20  Identities=25%  Similarity=0.327  Sum_probs=8.5

Q ss_pred             HHHHHHHhHhhHHHHHHHHH
Q psy16994        503 LSEEHEDMSGKLKELTRENR  522 (932)
Q Consensus       503 l~~~l~~~~~~l~~l~~~~~  522 (932)
                      +-.+++.++.....+...+.
T Consensus       233 i~~~ie~l~~~n~~l~e~i~  252 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMIN  252 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333

>KOG0247|consensus

Probab=98.70  E-value=3.6e-09  Score=117.08  Aligned_cols=119  Identities=20%  Similarity=0.369  Sum_probs=71.0

Q ss_pred             CCCCCCCCcccchhHHHhhcCCCCCCCCCCccCCccccccccCchhhcccccccccccccCCCcccccCCCCceEEE---
Q psy16994          4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEV---   80 (932)
Q Consensus         4 ~Gs~~~~Gi~pr~ldviFnSi~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~---   80 (932)
                      +|++..+||+|||||||||||+++.++ .+.|+|...+.+.....+++....  +  |.-++..... .....+-..   
T Consensus       133 ~G~~~~~GIlPR~Ld~iF~siq~~~~~-k~~~kp~~s~~~e~~~~~~alL~l--k--r~~~~nd~~~-ts~~~~~~~~e~  206 (809)
T KOG0247|consen  133 TGTPDRPGILPRALDVIFNSIQGRQAK-KPVFKPLRSNLFEIKAEEDALLQL--K--REAMLNDRKS-TSKAHRQSTPEY  206 (809)
T ss_pred             ecCCCCCCchHHHHHHHHHHhhceecc-CceeccccchHHHHHHHHHHHHhh--h--hhhccccccC-cchhhccccHHH
Confidence            566999999999999999999999875 578999988777666555554310  1  1112211110 000000000   


Q ss_pred             eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHh-cCCCCce
Q psy16994         81 LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERY-LNGEDAL  139 (932)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~-~~g~~~~  139 (932)
                      .+.-++.-.|..           ...=|.+|..++|+.+||++.++||++.+ +.|.-..
T Consensus       207 ~e~~~~~e~~~~-----------~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~  255 (809)
T KOG0247|consen  207 AEHIHVIEQPAL-----------ELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQK  255 (809)
T ss_pred             Hhhcchhccccc-----------ccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhh
Confidence            000000000000           01237899999999999999999999987 4554333

>KOG0994|consensus

Probab=98.68  E-value=0.00056  Score=79.74  Aligned_cols=46  Identities=17%  Similarity=0.388  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994        808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ  853 (932)
Q Consensus       808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~  853 (932)
                      .|..+..+|-.+.......+++|+......+..+....++|..++.
T Consensus      1693 ~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence            3333333443333333333444443333333333333333333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.67  E-value=0.0015  Score=72.80  Aligned_cols=11  Identities=27%  Similarity=0.326  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHh
Q psy16994        380 ETIRLLEARLA  390 (932)
Q Consensus       380 el~~~~e~~l~  390 (932)
                      +.+..+-.+|+
T Consensus        74 e~ms~LySKL~   84 (786)
T PF05483_consen   74 EPMSRLYSKLY   84 (786)
T ss_pred             HHHHHHHHHHH
Confidence            44445555555

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0995|consensus

Probab=98.66  E-value=0.0015  Score=71.91  Aligned_cols=87  Identities=28%  Similarity=0.432  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL  564 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~  564 (932)
                      +++.++....++...+.    ++......++.++.....++.++++++.-+.++......+.         ..+..+..+
T Consensus       236 ~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~---------~~l~~l~~E  302 (581)
T KOG0995|consen  236 EIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHME---------KKLEMLKSE  302 (581)
T ss_pred             HHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHH---------HHHHHHHHH
Confidence            44455554444444444    22233334445555555555666666555555555555555         455555554


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy16994        565 LDEAKEEFKEQTTEIEQLRS  584 (932)
Q Consensus       565 l~~~~~~l~~l~~~i~~l~~  584 (932)
                      ++.-..+++.++.+...|+.
T Consensus       303 ie~kEeE~e~lq~~~d~Lk~  322 (581)
T KOG0995|consen  303 IEEKEEEIEKLQKENDELKK  322 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.62  E-value=0.0031  Score=73.35  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994        810 EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ  857 (932)
Q Consensus       810 ~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~  857 (932)
                      .+.+..|+.++........+.+..+...+..+..+-.+|..+.-..=.
T Consensus       418 qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~  465 (717)
T PF09730_consen  418 QERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM  465 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666666666666666666666666666555443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1029|consensus

Probab=98.60  E-value=0.00025  Score=79.30  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=12.9

Q ss_pred             cHHHHHHHHHHHHHhccccccc
Q psy16994        306 YAEETVQVLKISSVARDLLTVA  327 (932)
Q Consensus       306 ~~~et~~~l~~~~~~~~i~~~~  327 (932)
                      .++|-+-.+-++..|+.=..-|
T Consensus       247 ~~dEfilam~liema~sGq~lP  268 (1118)
T KOG1029|consen  247 SADEFILAMHLIEMAKSGQPLP  268 (1118)
T ss_pred             cHHHHHHHHHHHHHHhcCCCCC
Confidence            3566666666666676644444

>KOG4673|consensus

Probab=98.60  E-value=0.0023  Score=70.92  Aligned_cols=30  Identities=17%  Similarity=0.426  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKL  514 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l  514 (932)
                      .+..+++.+..+-.+.+.+..++..++.++
T Consensus       410 Rva~lEkKvqa~~kERDalr~e~kslk~el  439 (961)
T KOG4673|consen  410 RVATLEKKVQALTKERDALRREQKSLKKEL  439 (961)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            555555555555555555555555444444

>KOG1029|consensus

Probab=98.48  E-value=0.0031  Score=70.92  Aligned_cols=8  Identities=25%  Similarity=0.430  Sum_probs=4.0

Q ss_pred             HHHhhcCC
Q psy16994         18 NILFNSLG   25 (932)
Q Consensus        18 dviFnSi~   25 (932)
                      |--|.++.
T Consensus        19 ~~qF~~Lk   26 (1118)
T KOG1029|consen   19 DAQFGQLK   26 (1118)
T ss_pred             HHHHhccC
Confidence            44555554

>KOG0018|consensus

Probab=98.46  E-value=0.0085  Score=70.65  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             hcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994        286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA  327 (932)
Q Consensus       286 ~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~  327 (932)
                      +.+|.+ ...||-+-.-+...|...|..+.+--.||++.++.
T Consensus        91 ~I~~G~-seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQ  131 (1141)
T KOG0018|consen   91 AINGGT-SEYMIDNEIVTREEYLEELEKINILVKARNFLVFQ  131 (1141)
T ss_pred             hhcCCc-eeEEEcceeccHHHHHHHHhhcceeeeeeeEEEec
Confidence            344333 67788777777788888888888888888776553

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.42  E-value=0.00039  Score=81.65  Aligned_cols=64  Identities=11%  Similarity=0.077  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN  753 (932)
Q Consensus       690 ~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~  753 (932)
                      .+...+..++++-..|+..+..-..--.+|=..+-+.+.+++-++..+...+.+|.+++.++.+
T Consensus       591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~  654 (697)
T PF09726_consen  591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ  654 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443333222222333334444444444444444444444444444433

; GO: 0016021 integral to membrane

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.41  E-value=0.01  Score=69.33  Aligned_cols=19  Identities=16%  Similarity=0.331  Sum_probs=7.2

Q ss_pred             HHHHHHHHhccchhHHHHH
Q psy16994        850 KSQQQQQQQRSPLKGLENQ  868 (932)
Q Consensus       850 ~~~~~~~~~~~~l~~le~~  868 (932)
                      .+...+..+...+..|...
T Consensus       469 ~v~~~l~~a~~~v~~L~~~  487 (560)
T PF06160_consen  469 EVNKQLEEAEDDVETLEEK  487 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.41  E-value=0.0002  Score=84.96  Aligned_cols=15  Identities=20%  Similarity=0.268  Sum_probs=11.4

Q ss_pred             ceeeecccccCCCcE
Q psy16994        138 ALLFSFGTTNSGKTF  152 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~  152 (932)
                      +..+-+|++|+|||.
T Consensus        28 g~~~i~G~NG~GKSt   42 (562)
T PHA02562         28 KKTLITGKNGAGKST   42 (562)
T ss_pred             CEEEEECCCCCCHHH
Confidence            355568999999975

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.37  E-value=0.024  Score=71.58  Aligned_cols=16  Identities=38%  Similarity=0.484  Sum_probs=13.1

Q ss_pred             CceeeecccccCCCcE
Q psy16994        137 DALLFSFGTTNSGKTF  152 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~  152 (932)
                      .+.+.-+|+||||||.
T Consensus        30 ~~l~~I~G~tGaGKSt   45 (1047)
T PRK10246         30 NGLFAITGPTGAGKTT   45 (1047)
T ss_pred             CCEEEEECCCCCCHHH
Confidence            4566778999999986

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.36  E-value=0.00082  Score=79.06  Aligned_cols=59  Identities=7%  Similarity=0.111  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK  767 (932)
Q Consensus       709 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~  767 (932)
                      +..++++-..|+..|..-..-..+|=..+.+...++..++..+..-..+|..|+.++.+
T Consensus       596 L~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~  654 (697)
T PF09726_consen  596 LSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ  654 (697)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333443333333333344444444444444444444444444444444444

; GO: 0016021 integral to membrane

>KOG0946|consensus

Probab=98.36  E-value=0.0013  Score=74.63  Aligned_cols=10  Identities=40%  Similarity=0.594  Sum_probs=3.8

Q ss_pred             cccchhHHHh
Q psy16994         12 IIPRTLNILF   21 (932)
Q Consensus        12 i~pr~ldviF   21 (932)
                      |+--.||.+.
T Consensus        79 ~ik~~LdTl~   88 (970)
T KOG0946|consen   79 IIKYALDTLL   88 (970)
T ss_pred             HHHHHHHHHH
Confidence            3333344333

>KOG0018|consensus

Probab=98.34  E-value=0.016  Score=68.39  Aligned_cols=10  Identities=40%  Similarity=0.634  Sum_probs=8.1

Q ss_pred             cccccCCCcE
Q psy16994        143 FGTTNSGKTF  152 (932)
Q Consensus       143 ~G~tgsGKt~  152 (932)
                      .||.|||||-
T Consensus        31 IGPNGSGKSN   40 (1141)
T KOG0018|consen   31 IGPNGSGKSN   40 (1141)
T ss_pred             eCCCCCchHH
Confidence            3999999965

>KOG0963|consensus

Probab=98.33  E-value=0.011  Score=65.93  Aligned_cols=50  Identities=18%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy16994        824 HNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN  873 (932)
Q Consensus       824 ~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~  873 (932)
                      ..+...|......+..++..+....+...........-+..++.-+.+.+
T Consensus       389 q~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~  438 (629)
T KOG0963|consen  389 QNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQ  438 (629)
T ss_pred             hHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence            33344444555555556666666666655555544444455555555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.32  E-value=0.00025  Score=84.16  Aligned_cols=21  Identities=19%  Similarity=0.433  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHH
Q psy16994        488 NLKQELSELEAKYKSLSEEHE  508 (932)
Q Consensus       488 ~l~~~l~~l~~~l~~l~~~l~  508 (932)
                      .++.++..+..++..+..++.
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444433333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=98.30  E-value=0.0057  Score=63.41  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=11.2

Q ss_pred             hhhccCCCcccccccccccccccccc
Q psy16994        900 KRQLKKPSTHLNSTAGLAENVNLITP  925 (932)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (932)
                      ++....|  .+.|++..++-+|+-|.
T Consensus       460 R~qad~P--~e~~aiAaedt~~~GPl  483 (499)
T COG4372         460 RSQADTP--SERSAIAAEDTVGPGPL  483 (499)
T ss_pred             HHhcCCc--ccccCCCCCCCcCCCch
Confidence            3344444  34445555554444443

>KOG0946|consensus

Probab=98.28  E-value=0.001  Score=75.42  Aligned_cols=37  Identities=14%  Similarity=0.190  Sum_probs=16.0

Q ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        798 SAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL  834 (932)
Q Consensus       798 ~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l  834 (932)
                      ++.....+...+.-.+.+....+..+.+.+.+|....
T Consensus       905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~  941 (970)
T KOG0946|consen  905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV  941 (970)
T ss_pred             cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence            3333344444444444444444444444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.18  E-value=0.0067  Score=57.59  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=12.2

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVA  536 (932)
Q Consensus       503 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~  536 (932)
                      |..+...++..+......-..+..++..+...+.
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~   53 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLK   53 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.09  E-value=0.021  Score=65.99  Aligned_cols=16  Identities=19%  Similarity=0.165  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHhc
Q psy16994        246 SSLHVLARCFNVLREN  261 (932)
Q Consensus       246 ~sl~~l~~~i~~l~~~  261 (932)
                      .+...+..+...+...
T Consensus       127 ~~~~l~~~i~~~i~~~  142 (594)
T PF05667_consen  127 KSALLQRSIAQAIREQ  142 (594)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            4444555666666553

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.03  E-value=2.1e-06  Score=103.65  Aligned_cols=34  Identities=26%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994        839 EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI  872 (932)
Q Consensus       839 ~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l  872 (932)
                      +.+..|..++..++.....+...+..|+.++.++
T Consensus       503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~  536 (722)
T PF05557_consen  503 EELNELQKEIEELERENERLRQELEELESELEKL  536 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555555555666666553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4593|consensus

Probab=98.01  E-value=0.051  Score=61.57  Aligned_cols=17  Identities=24%  Similarity=0.481  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy16994        840 MINNLKAQMEKSQQQQQ  856 (932)
Q Consensus       840 ~~~~L~~~l~~~~~~~~  856 (932)
                      .+..|+.++.......+
T Consensus       601 ev~qlk~ev~s~ekr~~  617 (716)
T KOG4593|consen  601 EVAQLKKEVESAEKRNQ  617 (716)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44445544444444333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.99  E-value=0.037  Score=59.14  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=12.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        513 KLKELTRENRDLVTKNKELEGKVAQLSRR  541 (932)
Q Consensus       513 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~  541 (932)
                      .++.++.....+..+...++.-...++.+
T Consensus       296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K  324 (622)
T COG5185         296 KIKTLREKWRALKSDSNKYENYVNAMKQK  324 (622)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33344444444444444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.97  E-value=0.011  Score=68.18  Aligned_cols=9  Identities=22%  Similarity=0.346  Sum_probs=4.2

Q ss_pred             CHHHHHHHH
Q psy16994        164 SCEEAYRVL  172 (932)
Q Consensus       164 s~~~~~~~l  172 (932)
                      +..++..+|
T Consensus        93 ~e~~~R~ll  101 (594)
T PF05667_consen   93 NEKDLRRLL  101 (594)
T ss_pred             ChHHHHHHH
Confidence            344555444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.86  E-value=9.1e-06  Score=98.14  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        809 LEDQVNSLKAELEQRHNVVRDLQLKLL  835 (932)
Q Consensus       809 l~~e~~~l~~el~~~~~~~~~l~~~l~  835 (932)
                      |..++..|..++..+...+..|..++.
T Consensus       508 L~~~~~~Le~e~~~L~~~~~~Le~~l~  534 (722)
T PF05557_consen  508 LQKEIEELERENERLRQELEELESELE  534 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.86  E-value=3.2e-06  Score=101.75  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHH
Q psy16994        831 QLKLLQKGEMINNLKAQMEK  850 (932)
Q Consensus       831 ~~~l~~~~~~~~~L~~~l~~  850 (932)
                      ...+......|..|+.+++.
T Consensus       628 ~~ql~e~~~~i~~lE~~~e~  647 (713)
T PF05622_consen  628 KKQLQEKDRRIESLEKELEK  647 (713)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            33444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0978|consensus

Probab=97.84  E-value=0.11  Score=59.98  Aligned_cols=12  Identities=17%  Similarity=0.147  Sum_probs=5.2

Q ss_pred             hhhhccCCCccc
Q psy16994        899 KKRQLKKPSTHL  910 (932)
Q Consensus       899 ~~~~~~~~~~~~  910 (932)
                      .|+..-..+.|.
T Consensus       653 ~Kd~vI~kC~H~  664 (698)
T KOG0978|consen  653 WKDAVITKCGHV  664 (698)
T ss_pred             hhhHHHHhcchH
Confidence            344444444443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.045  Score=55.48  Aligned_cols=51  Identities=14%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL  740 (932)
Q Consensus       690 ~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l  740 (932)
                      ....+...++..-..++..+..+..-..+++..+..|..+...+..-+..+
T Consensus       152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~  202 (265)
T COG3883         152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL  202 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333444333333333333333

>KOG0980|consensus

Probab=97.83  E-value=0.1  Score=60.48  Aligned_cols=45  Identities=20%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE  532 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~  532 (932)
                      .+..+..++..+...+..+..   ..+..+...+..+..++.++...+
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~---ear~~~~q~~~ql~~le~~~~e~q  378 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKE---EARRRIEQYENQLLALEGELQEQQ  378 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            555555555555544443322   233344444444444444444333

>KOG0980|consensus

Probab=97.80  E-value=0.12  Score=60.07  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=10.1

Q ss_pred             HHhhhHHHHHHHhHhhHHHHHHHH
Q psy16994        498 AKYKSLSEEHEDMSGKLKELTREN  521 (932)
Q Consensus       498 ~~l~~l~~~l~~~~~~l~~l~~~~  521 (932)
                      ..+..++..+..+.-++...+...
T Consensus       358 ~~~~q~~~ql~~le~~~~e~q~~~  381 (980)
T KOG0980|consen  358 RRIEQYENQLLALEGELQEQQREA  381 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334444444444444444433333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.78  E-value=0.06  Score=54.80  Aligned_cols=14  Identities=36%  Similarity=0.515  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q psy16994        806 RKQLEDQVNSLKAE  819 (932)
Q Consensus       806 ~~~l~~e~~~l~~e  819 (932)
                      ++.|..++..|+..
T Consensus       280 NKeL~ne~n~LkEr  293 (305)
T PF14915_consen  280 NKELINECNHLKER  293 (305)
T ss_pred             hHHHHHHHHHHHHH
Confidence            33444444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.70  E-value=0.12  Score=62.18  Aligned_cols=14  Identities=29%  Similarity=0.430  Sum_probs=11.5

Q ss_pred             eeeecccccCCCcE
Q psy16994        139 LLFSFGTTNSGKTF  152 (932)
Q Consensus       139 ~i~~~G~tgsGKt~  152 (932)
                      +++-+|+.|+|||.
T Consensus        30 ~~~i~G~Ng~GKtt   43 (650)
T TIGR03185        30 IILIGGLNGAGKTT   43 (650)
T ss_pred             EEEEECCCCCCHHH
Confidence            55678999999986

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.68  E-value=0.036  Score=54.40  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMS  511 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~  511 (932)
                      +|..+..++.++...+..+..+..-++
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk   39 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLK   39 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555444333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.62  E-value=1.2e-05  Score=96.73  Aligned_cols=6  Identities=33%  Similarity=0.573  Sum_probs=0.0

Q ss_pred             HHHHHH
Q psy16994        864 GLENQM  869 (932)
Q Consensus       864 ~le~~l  869 (932)
                      .|+..|
T Consensus       580 ~Le~~L  585 (713)
T PF05622_consen  580 ELEEAL  585 (713)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0962|consensus

Probab=97.58  E-value=0.41  Score=59.04  Aligned_cols=62  Identities=15%  Similarity=0.084  Sum_probs=31.3

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16994        795 LEASAATPSQYRKQLEDQVNSLK-----AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQ  856 (932)
Q Consensus       795 L~~~l~~~~~~~~~l~~e~~~l~-----~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~  856 (932)
                      +..++.++..+...+..++....     .+...+......+......+.+....++.++.....++.
T Consensus      1013 l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            44444444444444443333222     344444455555555555555666666666666666555

>KOG0978|consensus

Probab=97.55  E-value=0.3  Score=56.67  Aligned_cols=16  Identities=31%  Similarity=0.358  Sum_probs=8.2

Q ss_pred             CChHHHHHHHHHHHhh
Q psy16994        376 DDPYETIRLLEARLAE  391 (932)
Q Consensus       376 ~~~~el~~~~e~~l~~  391 (932)
                      +..+++..+.++++.+
T Consensus       153 ~~iee~~~~~~~~~~e  168 (698)
T KOG0978|consen  153 DEIEELRELASTRMEE  168 (698)
T ss_pred             cchhHHHHHHHHHHHH
Confidence            3344555555566553

>KOG0963|consensus

Probab=97.49  E-value=0.29  Score=55.11  Aligned_cols=8  Identities=25%  Similarity=0.463  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q psy16994        778 AVQDELAE  785 (932)
Q Consensus       778 ~~~~el~~  785 (932)
                      ++..++.-
T Consensus       348 eIK~ELsi  355 (629)
T KOG0963|consen  348 EIKKELSI  355 (629)
T ss_pred             HHHHHHHH
Confidence            33334333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.46  E-value=0.24  Score=53.25  Aligned_cols=12  Identities=17%  Similarity=0.578  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q psy16994        775 RLKAVQDELAEM  786 (932)
Q Consensus       775 ~~~~~~~el~~l  786 (932)
                      +++.+++++.++
T Consensus       534 E~eklE~el~~l  545 (622)
T COG5185         534 EIEKLEKELNDL  545 (622)
T ss_pred             HHHHHHHHHHHh
Confidence            344444444443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.37  E-value=0.49  Score=54.86  Aligned_cols=63  Identities=24%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994        809 LEDQVNSLKAELEQRH--NVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       809 l~~e~~~l~~el~~~~--~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~  871 (932)
                      -..++..+...+....  ..-.+++..+..+.+.+-.=...++.+..++..+.-.+..++.++..
T Consensus       367 ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~  431 (511)
T PF09787_consen  367 KESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE  431 (511)
T ss_pred             HHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence            3444444444443322  22346666777666666666777778877777777788888877763

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF13514 AAA_27: AAA domain

Probab=97.35  E-value=0.99  Score=58.03  Aligned_cols=9  Identities=56%  Similarity=0.689  Sum_probs=4.9

Q ss_pred             CCceeeecc
Q psy16994        136 EDALLFSFG  144 (932)
Q Consensus       136 ~~~~i~~~G  144 (932)
                      ....+|+-|
T Consensus       114 lg~~Lf~ag  122 (1111)
T PF13514_consen  114 LGQLLFSAG  122 (1111)
T ss_pred             HHHHHHHhc
Confidence            345566655

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.29  E-value=0.44  Score=52.64  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=9.1

Q ss_pred             hcCchHHHHHHHHHHHHHHHHHH
Q psy16994        799 AATPSQYRKQLEDQVNSLKAELE  821 (932)
Q Consensus       799 l~~~~~~~~~l~~e~~~l~~el~  821 (932)
                      ..........+..++.+..-.++
T Consensus       449 ~~~~~~~i~~l~~eLse~pinm~  471 (570)
T COG4477         449 FFTAGHEIQDLMKELSEVPINME  471 (570)
T ss_pred             HHhhhhHHHHHHHHHhhcCCcHH
Confidence            33334444444444443333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.22  E-value=1.1  Score=58.38  Aligned_cols=22  Identities=14%  Similarity=0.227  Sum_probs=15.2

Q ss_pred             CCccCCCC--chHHhhhhhcCCCC
Q psy16994        270 KLIPFRDS--KLTQIFQRSLSGLS  291 (932)
Q Consensus       270 ~~vp~r~s--~LT~ll~~~l~g~~  291 (932)
                      +.++|+-.  .++.+|++||.+.+
T Consensus       195 P~Ls~~~~~~~l~~~l~~~l~~l~  218 (1353)
T TIGR02680       195 PQLSKKPDEGVLSDALTEALPPLD  218 (1353)
T ss_pred             CCCCCCCChHHHHHHHHHhCCCCC
Confidence            55666654  47788888887765

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG1853|consensus

Probab=97.20  E-value=0.25  Score=48.55  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Q psy16994        828 RDLQLKLLQKGEMINNLKAQMEKS  851 (932)
Q Consensus       828 ~~l~~~l~~~~~~~~~L~~~l~~~  851 (932)
                      .|+..++.+..+.++-|+.+|.+.
T Consensus       136 eDfeqrLnqAIErnAfLESELdEk  159 (333)
T KOG1853|consen  136 EDFEQRLNQAIERNAFLESELDEK  159 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            344444444444444444444333

>KOG0962|consensus

Probab=97.20  E-value=1.1  Score=55.49  Aligned_cols=13  Identities=38%  Similarity=0.716  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q psy16994        774 DRLKAVQDELAEM  786 (932)
Q Consensus       774 ~~~~~~~~el~~l  786 (932)
                      .++..+..++..+
T Consensus      1015 ~q~~e~~re~~~l 1027 (1294)
T KOG0962|consen 1015 RKLKELERELSEL 1027 (1294)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.17  E-value=0.72  Score=52.78  Aligned_cols=46  Identities=24%  Similarity=0.275  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE  530 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~  530 (932)
                      .+..+......++..+..+.........++.....+.+.+...+.+
T Consensus       163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk  208 (739)
T PF07111_consen  163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK  208 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443333333333333333333333333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.16  E-value=0.37  Score=49.31  Aligned_cols=13  Identities=8%  Similarity=0.125  Sum_probs=5.1

Q ss_pred             CchHHHHHHHHHH
Q psy16994        801 TPSQYRKQLEDQV  813 (932)
Q Consensus       801 ~~~~~~~~l~~e~  813 (932)
                      ++..++..|.+.+
T Consensus       282 eL~ne~n~LkEr~  294 (305)
T PF14915_consen  282 ELINECNHLKERL  294 (305)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333344444333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.09  E-value=0.61  Score=50.58  Aligned_cols=20  Identities=25%  Similarity=0.380  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHH
Q psy16994        486 IQNLKQELSELEAKYKSLSE  505 (932)
Q Consensus       486 i~~l~~~l~~l~~~l~~l~~  505 (932)
                      +.+|...+.+.+..+.+++.
T Consensus        77 c~EL~~~I~egr~~~~~~E~   96 (325)
T PF08317_consen   77 CRELKKYISEGRQIFEEIEE   96 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444433333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.04  E-value=0.68  Score=50.25  Aligned_cols=16  Identities=25%  Similarity=0.268  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHh
Q psy16994        485 KIQNLKQELSELEAKY  500 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l  500 (932)
                      .|.+....+.+++.++
T Consensus        83 ~I~egr~~~~~~E~~~   98 (325)
T PF08317_consen   83 YISEGRQIFEEIEEET   98 (325)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>TIGR00618 sbcc exonuclease SbcC

Probab=96.94  E-value=2.2  Score=54.48  Aligned_cols=15  Identities=33%  Similarity=0.563  Sum_probs=12.6

Q ss_pred             ceeeecccccCCCcE
Q psy16994        138 ALLFSFGTTNSGKTF  152 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~  152 (932)
                      ++++-+|+||||||.
T Consensus        27 gl~~I~G~nGaGKST   41 (1042)
T TIGR00618        27 PIFLICGKTGAGKTT   41 (1042)
T ss_pred             CeEEEECCCCCCHHH
Confidence            566678999999986

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.89  E-value=0.53  Score=46.59  Aligned_cols=32  Identities=13%  Similarity=0.223  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        736 QVTKLEADCQSYLNTIKNMENDERSTKHNQEK  767 (932)
Q Consensus       736 ~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~  767 (932)
                      ++..++..+...+.++..+...+..-..+..+
T Consensus       162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~E  193 (207)
T PF05010_consen  162 ELLALQASLKKEEMKVQSLEESLEQKTKENEE  193 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444454444444444444444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.85  E-value=0.83  Score=48.17  Aligned_cols=16  Identities=19%  Similarity=0.264  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy16994        561 LKSLLDEAKEEFKEQT  576 (932)
Q Consensus       561 l~~~l~~~~~~l~~l~  576 (932)
                      +..+++..+.+.+.+.
T Consensus        14 L~~eLe~cq~ErDqyK   29 (319)
T PF09789_consen   14 LSQELEKCQSERDQYK   29 (319)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.83  E-value=1.5  Score=50.89  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994        838 GEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       838 ~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~  871 (932)
                      +..+..|..-+-..+..+..+......|.-+|.+
T Consensus       391 E~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlEr  424 (511)
T PF09787_consen  391 ESRLTQLTESLIQKQTQLESLGSEKNALRLQLER  424 (511)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhhhhhccccHHH
Confidence            3333333333333334443333333333334444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.81  E-value=1.9  Score=51.67  Aligned_cols=10  Identities=50%  Similarity=0.584  Sum_probs=4.8

Q ss_pred             cchhHHHHHH
Q psy16994        860 SPLKGLENQM  869 (932)
Q Consensus       860 ~~l~~le~~l  869 (932)
                      .+|..++.++
T Consensus       300 ~kL~~~e~ql  309 (769)
T PF05911_consen  300 SKLSQLEAQL  309 (769)
T ss_pred             HHHHHHHHHH
Confidence            3444555555

The function of this family is unknown.

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=96.68  E-value=0.00023  Score=82.52  Aligned_cols=146  Identities=27%  Similarity=0.348  Sum_probs=106.8

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec---------------------------
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------  156 (932)
                      .|.||.+|.+......++.. ...+++..++|    +++||++++|+++++.-                           
T Consensus       354 ~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  428 (568)
T COG5059         354 EIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKY  428 (568)
T ss_pred             HHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence            67888888888777777765 55666776777    99999999999998754                           


Q ss_pred             ---------------------------------------ceEEEecCHHHHHH-HHHhhhhccccccccCccCCCCCccE
Q psy16994        157 ---------------------------------------LTYVNVHSCEEAYR-VLRFGKSHLSVAPTELNHRSSRSHCV  196 (932)
Q Consensus       157 ---------------------------------------l~~~~v~s~~~~~~-~l~~g~~~r~~~~t~~n~~ssrsh~i  196 (932)
                                                             .+............ ........+..+.+..|.+++++|++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~  508 (568)
T COG5059         429 KSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRSHSK  508 (568)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccchhhcccchhhhhcccchh
Confidence                                                   00111111111111 11134566777889999999999999


Q ss_pred             EEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16994        197 FSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLR  259 (932)
Q Consensus       197 ~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~  259 (932)
                      |+.+............    +..|||||+||. .+...|.++++...+|++|..+|.++.++.
T Consensus       509 ~~~~~~~~~~~~~~~~----~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~  566 (568)
T COG5059         509 FRDHLNGSNSSTKELS----LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG  566 (568)
T ss_pred             hhhcccchhhhhHHHH----hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence            9988866533211111    799999999999 899999999999999999999999987753

>KOG1899|consensus

Probab=96.55  E-value=0.73  Score=51.47  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994        842 NNLKAQMEKSQQQQQQQRSPLKGLENQM  869 (932)
Q Consensus       842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l  869 (932)
                      +.|+..|+.+-....+....+.++..-+
T Consensus       277 ~~lk~a~eslm~ane~kdr~ie~lr~~l  304 (861)
T KOG1899|consen  277 NTLKNALESLMRANEQKDRFIESLRNYL  304 (861)
T ss_pred             HHHHHHHHHHHhhchhhhhHHHHHHHHh
Confidence            3444444444444444444444444333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.33  E-value=0.6  Score=46.78  Aligned_cols=12  Identities=8%  Similarity=0.343  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q psy16994        810 EDQVNSLKAELE  821 (932)
Q Consensus       810 ~~e~~~l~~el~  821 (932)
                      ...|++|+..|.
T Consensus       161 ~sk~e~L~ekyn  172 (307)
T PF10481_consen  161 DSKYEELQEKYN  172 (307)
T ss_pred             hhhHHHHHHHHH
Confidence            344555555543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR00634 recN DNA repair protein RecN

Probab=96.30  E-value=2.1  Score=50.45  Aligned_cols=13  Identities=31%  Similarity=0.478  Sum_probs=10.3

Q ss_pred             eecccccCCCcEE
Q psy16994        141 FSFGTTNSGKTFT  153 (932)
Q Consensus       141 ~~~G~tgsGKt~t  153 (932)
                      +-+|+||||||..
T Consensus        26 vitG~nGaGKS~l   38 (563)
T TIGR00634        26 VLTGETGAGKSMI   38 (563)
T ss_pred             EEECCCCCCHHHH
Confidence            4579999999763

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.25  E-value=3.2  Score=47.80  Aligned_cols=11  Identities=18%  Similarity=0.471  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q psy16994        842 NNLKAQMEKSQ  852 (932)
Q Consensus       842 ~~L~~~l~~~~  852 (932)
                      ..+..++...+
T Consensus       559 ~~lR~EL~~QQ  569 (739)
T PF07111_consen  559 AELRRELTQQQ  569 (739)
T ss_pred             HHHHHHHHHHH
Confidence            34444443333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.22  E-value=1.3  Score=44.47  Aligned_cols=13  Identities=23%  Similarity=0.560  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q psy16994        822 QRHNVVRDLQLKL  834 (932)
Q Consensus       822 ~~~~~~~~l~~~l  834 (932)
                      .+...+.+|+..|
T Consensus       289 EL~ski~ELE~rL  301 (307)
T PF10481_consen  289 ELRSKINELELRL  301 (307)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333344444333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.10  E-value=7.8  Score=50.77  Aligned_cols=16  Identities=25%  Similarity=0.384  Sum_probs=11.7

Q ss_pred             eeeecccccCCCcEEE
Q psy16994        139 LLFSFGTTNSGKTFTI  154 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~  154 (932)
                      .++-.|+.|||||.+|
T Consensus        26 ~~~~~G~NGsGKS~~l   41 (1353)
T TIGR02680        26 RLLLRGNNGAGKSKVL   41 (1353)
T ss_pred             eEEEECCCCCcHHHHH
Confidence            4455699999998754

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.08  E-value=1  Score=55.50  Aligned_cols=12  Identities=25%  Similarity=0.346  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q psy16994        247 SLHVLARCFNVL  258 (932)
Q Consensus       247 sl~~l~~~i~~l  258 (932)
                      |=..+.+||..|
T Consensus        83 Sr~v~~~VV~~L   94 (754)
T TIGR01005        83 SNEILKQVVDKL   94 (754)
T ss_pred             cHHHHHHHHHHc
Confidence            333344444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.95  E-value=1.7  Score=50.65  Aligned_cols=16  Identities=13%  Similarity=0.476  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHh
Q psy16994        531 LEGKVAQLSRRVEEME  546 (932)
Q Consensus       531 l~~~~~~l~~~~~~l~  546 (932)
                      ++.++..++.++...+
T Consensus       166 l~~ql~~~~~~L~~ae  181 (498)
T TIGR03007       166 IDEQIKTYEKKLEAAE  181 (498)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444443333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.94  E-value=2.9  Score=48.72  Aligned_cols=22  Identities=14%  Similarity=0.138  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy16994        723 IAELKTKCEELTQQVTKLEADC  744 (932)
Q Consensus       723 l~~l~~~~~~l~~~l~~l~~~l  744 (932)
                      +..++.+....+.....+..++
T Consensus       357 l~~L~Re~~~~~~~Y~~l~~r~  378 (498)
T TIGR03007       357 LTQLNRDYEVNKSNYEQLLTRR  378 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0979|consensus

Probab=95.88  E-value=5.9  Score=47.62  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=24.9

Q ss_pred             eecccccCCCcEEEe------cceEEEecCHHHHHHHHHhhh
Q psy16994        141 FSFGTTNSGKTFTIQ------DLTYVNVHSCEEAYRVLRFGK  176 (932)
Q Consensus       141 ~~~G~tgsGKt~t~~------Gl~~~~v~s~~~~~~~l~~g~  176 (932)
                      |-.||.|||||..+-      |.+--.+.-+..+-.++..|.
T Consensus        46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~   87 (1072)
T KOG0979|consen   46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGE   87 (1072)
T ss_pred             eEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCC
Confidence            456999999998643      344445666677777887763

>TIGR00634 recN DNA repair protein RecN

Probab=95.83  E-value=4.8  Score=47.51  Aligned_cols=12  Identities=0%  Similarity=-0.003  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q psy16994        568 AKEEFKEQTTEI  579 (932)
Q Consensus       568 ~~~~l~~l~~~i  579 (932)
                      ...+++.++.++
T Consensus       187 ~~~eld~L~~ql  198 (563)
T TIGR00634       187 LAQRLDFLQFQL  198 (563)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF13514 AAA_27: AAA domain

Probab=95.80  E-value=9.3  Score=49.30  Aligned_cols=7  Identities=29%  Similarity=0.771  Sum_probs=3.4

Q ss_pred             ecceecC
Q psy16994        106 RFSNIYG  112 (932)
Q Consensus       106 ~fd~v~~  112 (932)
                      .|..+|+
T Consensus        88 ~f~~iF~   94 (1111)
T PF13514_consen   88 TFEAIFS   94 (1111)
T ss_pred             HHHHHHc
Confidence            3455554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.64  E-value=3.4  Score=43.12  Aligned_cols=8  Identities=25%  Similarity=0.335  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q psy16994        649 KENLISQL  656 (932)
Q Consensus       649 l~~~~~~l  656 (932)
                      +...+..+
T Consensus       140 L~k~i~~L  147 (310)
T PF09755_consen  140 LQKKIERL  147 (310)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG2129|consensus

Probab=95.62  E-value=3.9  Score=43.62  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=8.4

Q ss_pred             hccCCCcccccccccccccc
Q psy16994        902 QLKKPSTHLNSTAGLAENVN  921 (932)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~  921 (932)
                      ...+|..+.+||.+.+-+||
T Consensus       361 s~~sPvs~t~s~~s~~~SPg  380 (552)
T KOG2129|consen  361 SANSPVSNTNSPASSTSSPG  380 (552)
T ss_pred             ccCCCcccCCCcccccCCCc
Confidence            33444444444444333333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.48  E-value=2  Score=53.01  Aligned_cols=31  Identities=13%  Similarity=0.058  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16994        516 ELTRENRDLVTKNKELEGKVAQLSRRVEEME  546 (932)
Q Consensus       516 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  546 (932)
                      .......-+..++..++.++...+.++...+
T Consensus       191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk  221 (754)
T TIGR01005       191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYR  221 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555555554444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.46  E-value=5.6  Score=44.39  Aligned_cols=6  Identities=33%  Similarity=0.495  Sum_probs=2.4

Q ss_pred             cccccC
Q psy16994        323 LLTVAK  328 (932)
Q Consensus       323 i~~~~~  328 (932)
                      +.+.|+
T Consensus        40 l~~lPv   45 (570)
T COG4477          40 LLNLPV   45 (570)
T ss_pred             HHcCCc
Confidence            334443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.33  E-value=3.4  Score=41.14  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        520 ENRDLVTKNKELEGKVAQLSRRV  542 (932)
Q Consensus       520 ~~~~l~~~~~~l~~~~~~l~~~~  542 (932)
                      +...+...+..+..++..+...+
T Consensus        56 eN~~L~epL~~a~~e~~eL~k~L   78 (201)
T PF13851_consen   56 ENKRLSEPLKKAEEEVEELRKQL   78 (201)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.32  E-value=4.4  Score=42.35  Aligned_cols=8  Identities=13%  Similarity=0.364  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q psy16994        805 YRKQLEDQ  812 (932)
Q Consensus       805 ~~~~l~~e  812 (932)
                      ++..|+..
T Consensus       269 EN~rLqr~  276 (310)
T PF09755_consen  269 ENRRLQRK  276 (310)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.19  E-value=3.4  Score=40.36  Aligned_cols=16  Identities=44%  Similarity=0.488  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHhh
Q psy16994        486 IQNLKQELSELEAKYK  501 (932)
Q Consensus       486 i~~l~~~l~~l~~~l~  501 (932)
                      |.-|..++.+...++.
T Consensus        12 IsLLKqQLke~q~E~~   27 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVN   27 (202)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333334433333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.17  E-value=1.9  Score=51.65  Aligned_cols=9  Identities=11%  Similarity=0.479  Sum_probs=4.0

Q ss_pred             CCCcEEEec
Q psy16994        148 SGKTFTIQD  156 (932)
Q Consensus       148 sGKt~t~~G  156 (932)
                      .|-+|.+.+
T Consensus       249 ng~v~~~~~  257 (717)
T PF10168_consen  249 NGDVYLLYT  257 (717)
T ss_pred             CCCEEEEEE
Confidence            444444433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.11  E-value=0.44  Score=47.38  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT  738 (932)
Q Consensus       705 le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~  738 (932)
                      +...+..+..++..+...+......+..+.+++.
T Consensus       121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~  154 (194)
T PF08614_consen  121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQ  154 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR00618 sbcc exonuclease SbcC

Probab=94.86  E-value=17  Score=46.64  Aligned_cols=6  Identities=17%  Similarity=0.324  Sum_probs=2.3

Q ss_pred             EEEEEE
Q psy16994        198 SIKLVK  203 (932)
Q Consensus       198 ~i~v~~  203 (932)
                      .|++..
T Consensus         5 ~L~l~n   10 (1042)
T TIGR00618         5 RLTLKN   10 (1042)
T ss_pred             EEEEeC
Confidence            344433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0982|consensus

Probab=94.75  E-value=7.3  Score=41.96  Aligned_cols=6  Identities=17%  Similarity=0.695  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy16994        722 DIAELK  727 (932)
Q Consensus       722 ~l~~l~  727 (932)
                      +++.++
T Consensus       411 evkrLr  416 (502)
T KOG0982|consen  411 EVKRLR  416 (502)
T ss_pred             HHHHhc
Confidence            333333

>KOG4809|consensus

Probab=94.39  E-value=10  Score=42.19  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=18.2

Q ss_pred             ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994        162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL  201 (932)
Q Consensus       162 v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v  201 (932)
                      +.+.......+.....++.+.-.-.  .+.+||.+|.|..
T Consensus       122 i~dlQ~q~k~lqrE~~nlkvelelk--eekLsssMnsIKT  159 (654)
T KOG4809|consen  122 LADLQRQAKLLQREEHNLKVELELK--EEKLSSSMNSIKT  159 (654)
T ss_pred             hhhhHHHHHHHHHHhhhhhHHHHHH--HHHhcCccccccc
Confidence            3444444444444444444432221  2345677777655

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.34  E-value=1.1  Score=48.14  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        691 KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER  759 (932)
Q Consensus       691 l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~  759 (932)
                      ++.+...+..++..++.+...+..++..++.+...+.......-.....+..++.....+.+.+..++.
T Consensus        55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1850|consensus

Probab=94.26  E-value=7.6  Score=40.07  Aligned_cols=78  Identities=10%  Similarity=0.187  Sum_probs=36.1

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994        795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI  872 (932)
Q Consensus       795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l  872 (932)
                      .+.+++.+...+..++.+---.+...+.....+-++.....-....+..+...|..++.-.+.+.....++...+..+
T Consensus       248 fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~  325 (391)
T KOG1850|consen  248 FKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDL  325 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            333344444444444444444444444444444444444444444455555555555555554444444444444443

>KOG4360|consensus

Probab=94.02  E-value=5.2  Score=44.12  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy16994        565 LDEAKEEFKEQTTEIEQLRSEV  586 (932)
Q Consensus       565 l~~~~~~l~~l~~~i~~l~~~l  586 (932)
                      .+.+..++..+.+++..+..+.
T Consensus       161 ~EaL~ekLk~~~een~~lr~k~  182 (596)
T KOG4360|consen  161 LEALQEKLKPLEEENTQLRSKA  182 (596)
T ss_pred             HHHHHhhcCChHHHHHHHHHHH
Confidence            3344444444444444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.97  E-value=1.2  Score=47.87  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        728 TKCEELTQQVTKLEADCQSYLNTIKNMENDERS  760 (932)
Q Consensus       728 ~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~  760 (932)
                      .....+..++.....+...+..++.....++..
T Consensus        99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen   99 REYNELQLELIEFQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0804|consensus

Probab=93.82  E-value=4.6  Score=43.85  Aligned_cols=49  Identities=6%  Similarity=0.085  Sum_probs=28.9

Q ss_pred             ccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCC-CCCccEEEEEEEEe
Q psy16994        146 TNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRS-SRSHCVFSIKLVKV  204 (932)
Q Consensus       146 tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~s-srsh~i~~i~v~~~  204 (932)
                      .|.+--|++    -+...+..+|..++..-+      +..+|..- --.|.||...|.-.
T Consensus       110 d~~pnrymv----LIkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~  159 (493)
T KOG0804|consen  110 DGMPNRYMV----LIKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT  159 (493)
T ss_pred             cCCCceEEE----EEEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence            778888855    466777778877775421      12222221 13588887766554

>KOG0979|consensus

Probab=93.80  E-value=20  Score=43.34  Aligned_cols=6  Identities=17%  Similarity=0.457  Sum_probs=3.4

Q ss_pred             EEEEEE
Q psy16994        215 SSFDIC  220 (932)
Q Consensus       215 s~l~~v  220 (932)
                      +.|+||
T Consensus        42 psLNmI   47 (1072)
T KOG0979|consen   42 PSLNMI   47 (1072)
T ss_pred             CceeeE
Confidence            456655

>KOG0804|consensus

Probab=93.78  E-value=5.2  Score=43.45  Aligned_cols=8  Identities=13%  Similarity=0.222  Sum_probs=3.5

Q ss_pred             HHHHHHHH
Q psy16994        165 CEEAYRVL  172 (932)
Q Consensus       165 ~~~~~~~l  172 (932)
                      ..|++.++
T Consensus        88 ~~Dll~F~   95 (493)
T KOG0804|consen   88 SHDLLRFC   95 (493)
T ss_pred             HHHHHHHH
Confidence            34444444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.69  E-value=6.5  Score=37.27  Aligned_cols=11  Identities=18%  Similarity=0.498  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q psy16994        776 LKAVQDELAEM  786 (932)
Q Consensus       776 ~~~~~~el~~l  786 (932)
                      +...+.++..+
T Consensus       135 ~rkke~E~~kL  145 (151)
T PF11559_consen  135 LRKKEREIEKL  145 (151)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.62  E-value=0.033  Score=56.69  Aligned_cols=69  Identities=23%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------ceEEEecCHHHHHHHHH
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD----------LTYVNVHSCEEAYRVLR  173 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------l~~~~v~s~~~~~~~l~  173 (932)
                      .|+||..+.. .++...|.. +..+... .......+|-||++|+||||.+.+          -..|..-+++++..-+.
T Consensus         4 ~~tFdnfv~g-~~N~~a~~~-~~~ia~~-~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~   80 (219)
T PF00308_consen    4 KYTFDNFVVG-ESNELAYAA-AKAIAEN-PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA   80 (219)
T ss_dssp             T-SCCCS--T-TTTHHHHHH-HHHHHHS-TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred             CCccccCCcC-CcHHHHHHH-HHHHHhc-CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence            5999986653 444555543 4444444 222233578899999999997665          12345555666655444


Q ss_pred             hh
Q psy16994        174 FG  175 (932)
Q Consensus       174 ~g  175 (932)
                      .+
T Consensus        81 ~~   82 (219)
T PF00308_consen   81 DA   82 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK10869 recombination and repair protein; Provisional

Probab=93.25  E-value=21  Score=41.88  Aligned_cols=11  Identities=36%  Similarity=0.570  Sum_probs=8.7

Q ss_pred             ecccccCCCcE
Q psy16994        142 SFGTTNSGKTF  152 (932)
Q Consensus       142 ~~G~tgsGKt~  152 (932)
                      -.|+||||||-
T Consensus        27 itGetGaGKS~   37 (553)
T PRK10869         27 ITGETGAGKSI   37 (553)
T ss_pred             EECCCCCChHH
Confidence            46999999965

>KOG0992|consensus

Probab=93.11  E-value=17  Score=40.24  Aligned_cols=28  Identities=25%  Similarity=0.457  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994        841 INNLKAQMEKSQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       841 ~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~  871 (932)
                      +..++.++...+.   .....|++|+.++..
T Consensus       387 leelk~~f~a~q~---K~a~tikeL~~El~~  414 (613)
T KOG0992|consen  387 LEELKVQFTAKQE---KHAETIKELEIELEE  414 (613)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            4444444444333   233467777777765

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.96  E-value=5.1  Score=43.73  Aligned_cols=12  Identities=8%  Similarity=-0.022  Sum_probs=5.4

Q ss_pred             cHHHHHHHHHHH
Q psy16994        306 YAEETVQVLKIS  317 (932)
Q Consensus       306 ~~~et~~~l~~~  317 (932)
                      +.+.|.+.+=..
T Consensus        68 DPn~~~~~Il~~   79 (359)
T PF10498_consen   68 DPNATISNILDE   79 (359)
T ss_pred             CHHHHHHHHHHH
Confidence            334555544333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG2129|consensus

Probab=92.85  E-value=16  Score=39.28  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=9.6

Q ss_pred             hcCchHHHHHHHHHHHHHHHHHH
Q psy16994        799 AATPSQYRKQLEDQVNSLKAELE  821 (932)
Q Consensus       799 l~~~~~~~~~l~~e~~~l~~el~  821 (932)
                      +..+..+.....++...++..+.
T Consensus       280 ~~qy~~Ee~~~reen~rlQrkL~  302 (552)
T KOG2129|consen  280 LMQYRAEEVDHREENERLQRKLI  302 (552)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333344444444444444443

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=92.84  E-value=0.09  Score=56.98  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHhcCC----CCceeeecccccCCCcEEEe
Q psy16994        118 AELFQNIVHNMLERYLNG----EDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       118 ~~v~~~~~~~~v~~~~~g----~~~~i~~~G~tgsGKt~t~~  155 (932)
                      ...|.....-++.++...    ..+.|.-.||||.|||+|+.
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA  221 (407)
T COG1419         180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA  221 (407)
T ss_pred             hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence            344444444444444433    36677778999999999853

>PRK12377 putative replication protein; Provisional

Probab=92.83  E-value=0.078  Score=54.73  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhhh
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFGK  176 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g~  176 (932)
                      .+||........+..++.. +..++..+..+. ..++-||++|+||||.+.+        -..|.+.++.+++..+..+.
T Consensus        71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~  148 (248)
T PRK12377         71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY  148 (248)
T ss_pred             CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH
Confidence            4566655444556556654 566677666554 4678899999999997655        23356667778887776553

>KOG4677|consensus

Probab=92.62  E-value=18  Score=39.36  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994        826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA  870 (932)
Q Consensus       826 ~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~  870 (932)
                      ....+...+.++...+-.-...++.+-..++.+...+..|+..+.
T Consensus       425 s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N  469 (554)
T KOG4677|consen  425 SVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN  469 (554)
T ss_pred             hHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence            445555555666666666666777777777777777777777665

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.30  E-value=0.045  Score=56.19  Aligned_cols=31  Identities=23%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994        125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~  155 (932)
                      +.|++..+.+-.++.|+.-|+||||||+||.
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA  143 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA  143 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence            5677788888999999999999999999653

>PRK06893 DNA replication initiation factor; Validated

Probab=92.13  E-value=0.096  Score=53.83  Aligned_cols=47  Identities=13%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .++||..++.. +...     +..+...+..+++..++-||++|+||||.+.+
T Consensus        12 ~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a   58 (229)
T PRK06893         12 DETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA   58 (229)
T ss_pred             cccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence            47899888654 2221     22222333346777889999999999996544

>PF13166 AAA_13: AAA domain

Probab=92.03  E-value=37  Score=41.64  Aligned_cols=16  Identities=25%  Similarity=0.497  Sum_probs=11.1

Q ss_pred             CceeeecccccCCCcE
Q psy16994        137 DALLFSFGTTNSGKTF  152 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~  152 (932)
                      ...-+-||..|||||.
T Consensus        16 ~~~n~IYG~NGsGKSt   31 (712)
T PF13166_consen   16 KKINLIYGRNGSGKST   31 (712)
T ss_pred             CceEEEECCCCCCHHH
Confidence            3334568888899865

>PF13166 AAA_13: AAA domain

Probab=91.89  E-value=38  Score=41.51  Aligned_cols=13  Identities=23%  Similarity=0.332  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhc
Q psy16994        249 HVLARCFNVLREN  261 (932)
Q Consensus       249 ~~l~~~i~~l~~~  261 (932)
                      ++|.++|..+..+
T Consensus        30 Stlsr~l~~~~~~   42 (712)
T PF13166_consen   30 STLSRILKSLCRG   42 (712)
T ss_pred             HHHHHHHHHHhhc
Confidence            5677777777653

>KOG1850|consensus

Probab=91.24  E-value=20  Score=37.10  Aligned_cols=17  Identities=0%  Similarity=0.372  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy16994        770 KIYEDRLKAVQDELAEM  786 (932)
Q Consensus       770 ~~~~~~~~~~~~el~~l  786 (932)
                      ..|..+++.+.+.+..+
T Consensus       246 ~~fK~E~ekmtKk~kkl  262 (391)
T KOG1850|consen  246 TKFKQEMEKMTKKIKKL  262 (391)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=91.23  E-value=26  Score=38.37  Aligned_cols=19  Identities=32%  Similarity=0.531  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy16994        556 EEVKYLKSLLDEAKEEFKE  574 (932)
Q Consensus       556 ~~~~~l~~~l~~~~~~l~~  574 (932)
                      ..+..++.++...+..+..
T Consensus        15 ~~V~~m~~~L~~~~~~L~~   33 (344)
T PF12777_consen   15 EQVEEMQEELEEKQPELEE   33 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444443333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK06620 hypothetical protein; Validated

Probab=91.11  E-value=0.12  Score=52.31  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCC---ceeeecccccCCCcEEEe
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED---ALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~---~~i~~~G~tgsGKt~t~~  155 (932)
                      .|+||..+. ..++...|..+ ..+... + |+|   ..++-||++|+||||.+.
T Consensus        12 ~~tfd~Fvv-g~~N~~a~~~~-~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~   62 (214)
T PRK06620         12 KYHPDEFIV-SSSNDQAYNII-KNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK   62 (214)
T ss_pred             CCCchhhEe-cccHHHHHHHH-HHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence            588888665 44445566553 333321 1 333   458999999999999554

>PRK06835 DNA replication protein DnaC; Validated

Probab=90.89  E-value=0.12  Score=55.89  Aligned_cols=49  Identities=27%  Similarity=0.375  Sum_probs=35.1

Q ss_pred             HHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHh
Q psy16994        125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRF  174 (932)
Q Consensus       125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~  174 (932)
                      +..+++.+..+. ..|+-||++|+||||.+.+        -..|...++.+++..+..
T Consensus       172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~  228 (329)
T PRK06835        172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE  228 (329)
T ss_pred             HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence            556777766554 6688999999999997655        235666677777776654

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.77  E-value=0.1  Score=57.99  Aligned_cols=32  Identities=38%  Similarity=0.407  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      -...+..++...++.|+.-||||||||+||+.
T Consensus       246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~  277 (500)
T COG2804         246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA  277 (500)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            34456677888999999999999999999876

>smart00242 MYSc Myosin

Probab=90.38  E-value=0.84  Score=54.76  Aligned_cols=69  Identities=25%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEE-----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN-----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV  202 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~-----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~  202 (932)
                      .|.|.||+.-|.+|||||.+..-    |..+.     ..+.++-..-....+..--.+.|..|..|||---++.|.+.
T Consensus        89 ~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~  166 (677)
T smart00242       89 DKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFD  166 (677)
T ss_pred             cCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEEC
Confidence            68999999999999999986432    11111     12233322211222233345779999999998778777764

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=90.35  E-value=28  Score=37.16  Aligned_cols=36  Identities=11%  Similarity=0.153  Sum_probs=22.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994        835 LQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA  870 (932)
Q Consensus       835 ~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~  870 (932)
                      ..+.+..+.|.++|++.+.+..++...+.--.+.|.
T Consensus       352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLd  387 (442)
T PF06637_consen  352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD  387 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            455566677777777777777666555544444443

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=90.32  E-value=32  Score=37.75  Aligned_cols=37  Identities=35%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI  579 (932)
Q Consensus       534 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i  579 (932)
                      .+.+....+..++         .++...+-.+.....+.+.+-..+
T Consensus         9 KL~et~~~V~~m~---------~~L~~~~~~L~~k~~e~e~ll~~i   45 (344)
T PF12777_consen    9 KLKETEEQVEEMQ---------EELEEKQPELEEKQKEAEELLEEI   45 (344)
T ss_dssp             HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666         666666555555554444444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK07952 DNA replication protein DnaC; Validated

Probab=90.19  E-value=0.31  Score=50.18  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=42.3

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhh
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFG  175 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g  175 (932)
                      ++||........+..++.. +..+++.+..|. ..++.+|++|+||||.+.+        -..+.+-++.+++..+...
T Consensus        69 ~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~  145 (244)
T PRK07952         69 CSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT  145 (244)
T ss_pred             CccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH
Confidence            5666644334455556554 445555554443 4688899999999997654        2244455677777666543

>PRK08116 hypothetical protein; Validated

Probab=90.16  E-value=0.19  Score=52.81  Aligned_cols=68  Identities=13%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcC--CCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHH
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLN--GEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLR  173 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~--g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~  173 (932)
                      .++||... ....+...|.. +..++..+..  +.+..++-||++|+||||.+..        -..+.+.++.+++.-+.
T Consensus        81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~  158 (268)
T PRK08116         81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK  158 (268)
T ss_pred             hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence            46777644 45555555544 5666665543  3455689999999999997554        12345556666665554

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=89.90  E-value=0.22  Score=55.14  Aligned_cols=48  Identities=29%  Similarity=0.489  Sum_probs=36.2

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|....-|.|..+|-.    .+..+|+.+-+|...-+ ..|.|||||||||..
T Consensus         4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~An   51 (663)
T COG0556           4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMAN   51 (663)
T ss_pred             ceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHH
Confidence            4777778888888754    46677777777765433 469999999999987

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=89.72  E-value=0.25  Score=54.31  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-----------ceEEEecCHHHHHHHH
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-----------LTYVNVHSCEEAYRVL  172 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------l~~~~v~s~~~~~~~l  172 (932)
                      .|+||.... ..++.-.|.  +..-+.....+..-.||-||++|+||||.|..           ...+.+++..-+..++
T Consensus        83 ~ytFdnFv~-g~~N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v  159 (408)
T COG0593          83 KYTFDNFVV-GPSNRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV  159 (408)
T ss_pred             CCchhheee-CCchHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHH
Confidence            699988555 444444442  23333343444566788999999999998764           4556666554444444


Q ss_pred             Hh
Q psy16994        173 RF  174 (932)
Q Consensus       173 ~~  174 (932)
                      ..
T Consensus       160 ~a  161 (408)
T COG0593         160 KA  161 (408)
T ss_pred             HH
Confidence            43

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.70  E-value=23  Score=40.48  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=14.5

Q ss_pred             hhhhhcCCCCCeeEEEEecCC
Q psy16994        282 IFQRSLSGLSSTVKMIVNVNA  302 (932)
Q Consensus       282 ll~~~l~g~~~~~~~i~~~~p  302 (932)
                      ..+...||-+ ...|+|-..+
T Consensus       187 ~vr~~~gGi~-~a~F~VyA~r  206 (652)
T COG2433         187 EVRESYGGIS-RAEFTVYAPR  206 (652)
T ss_pred             EEeeccCccc-eeEEEEEcCh
Confidence            3566788888 7888887655

>PRK10869 recombination and repair protein; Provisional

Probab=89.56  E-value=50  Score=38.88  Aligned_cols=42  Identities=12%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16994        505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME  546 (932)
Q Consensus       505 ~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  546 (932)
                      ..+..+-..+..+..++..+.........++.-++-+++++.
T Consensus       157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~  198 (553)
T PRK10869        157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN  198 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555555555555555555554444444

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=89.40  E-value=55  Score=39.20  Aligned_cols=14  Identities=36%  Similarity=0.335  Sum_probs=7.4

Q ss_pred             CCCceeeecccccC
Q psy16994        135 GEDALLFSFGTTNS  148 (932)
Q Consensus       135 g~~~~i~~~G~tgs  148 (932)
                      |+++-++.-|.+||
T Consensus       143 ~i~~~LL~sgt~G~  156 (984)
T COG4717         143 GILGYLLFSGTSGS  156 (984)
T ss_pred             hHHHHHHHhccCCC
Confidence            44555555555554

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=89.28  E-value=44  Score=37.85  Aligned_cols=14  Identities=21%  Similarity=0.416  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy16994        720 EKDIAELKTKCEEL  733 (932)
Q Consensus       720 ~~~l~~l~~~~~~l  733 (932)
                      ..++..+...+..+
T Consensus       461 ~eeL~~a~~~i~~L  474 (518)
T PF10212_consen  461 EEELKEANQNISRL  474 (518)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG0982|consensus

Probab=88.85  E-value=39  Score=36.73  Aligned_cols=10  Identities=40%  Similarity=0.378  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q psy16994        528 NKELEGKVAQ  537 (932)
Q Consensus       528 ~~~l~~~~~~  537 (932)
                      +..++..+.+
T Consensus       224 v~flerkv~e  233 (502)
T KOG0982|consen  224 VRFLERKVQE  233 (502)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK05642 DNA replication initiation factor; Validated

Probab=88.79  E-value=0.28  Score=50.57  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=28.1

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..+.. . +...+.. +..+........+..++-||++|+||||.+.+
T Consensus        15 ~~tfdnF~~~-~-~~~a~~~-~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a   64 (234)
T PRK05642         15 DATFANYYPG-A-NAAALGY-VERLCEADAGWTESLIYLWGKDGVGRSHLLQA   64 (234)
T ss_pred             cccccccCcC-C-hHHHHHH-HHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence            4888887743 2 2233322 22222221112235688999999999995443

>KOG2991|consensus

Probab=88.76  E-value=28  Score=34.91  Aligned_cols=7  Identities=0%  Similarity=0.349  Sum_probs=2.6

Q ss_pred             HHHHHHh
Q psy16994        540 RRVEEME  546 (932)
Q Consensus       540 ~~~~~l~  546 (932)
                      ..+..++
T Consensus       108 d~i~nLk  114 (330)
T KOG2991|consen  108 DDITNLK  114 (330)
T ss_pred             HHHHhhH
Confidence            3333333

>PRK09087 hypothetical protein; Validated

Probab=88.56  E-value=0.25  Score=50.53  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~  155 (932)
                      .|+||..+.... +..+|..     +.....-.+..++-||++||||||.+.
T Consensus        17 ~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         17 AYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence            578888775433 3446653     333222235568999999999999544

>PLN02939 transferase, transferring glycosyl groups

Probab=88.47  E-value=74  Score=39.46  Aligned_cols=17  Identities=35%  Similarity=0.681  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy16994        772 YEDRLKAVQDELAEMKC  788 (932)
Q Consensus       772 ~~~~~~~~~~el~~l~~  788 (932)
                      |....+..+..+..+..
T Consensus       381 ~~~~~~~~~~~~~~~~~  397 (977)
T PLN02939        381 YQESIKEFQDTLSKLKE  397 (977)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44444444444444433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.72  E-value=3.7  Score=39.89  Aligned_cols=76  Identities=14%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994        794 SLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM  869 (932)
Q Consensus       794 ~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l  869 (932)
                      +++.++.+...++..|.+++..+..+++.....+..+...++.++++...|..++.++...+.+++..+...+..+
T Consensus       139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~  214 (290)
T COG4026         139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL  214 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence            3556666666777777778888888888888888888888888888888888888888888888877665555444

>PLN02939 transferase, transferring glycosyl groups

Probab=87.40  E-value=85  Score=38.95  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL  538 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l  538 (932)
                      +++++..-+...++.+--|.+.....-..++.+-.+.+.++.+++-++..+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (977)
T PLN02939        129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSET  182 (977)
T ss_pred             cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence            566666666666666555544433344444444455555555555555544443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.38  E-value=14  Score=42.01  Aligned_cols=6  Identities=17%  Similarity=0.501  Sum_probs=2.4

Q ss_pred             CCCcee
Q psy16994        135 GEDALL  140 (932)
Q Consensus       135 g~~~~i  140 (932)
                      |+-+.+
T Consensus       128 G~ev~~  133 (652)
T COG2433         128 GTEVSV  133 (652)
T ss_pred             CceeEe
Confidence            444433

>PRK06526 transposase; Provisional

Probab=87.34  E-value=0.28  Score=51.05  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHH
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLR  173 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~  173 (932)
                      |.|+  +.+..+...+..-...+++.   .+.|  |+.||++|+||||...++        ..|.+.++.+++.-+.
T Consensus        73 fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~  142 (254)
T PRK06526         73 FDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA  142 (254)
T ss_pred             ccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence            4444  33444444444333334443   3343  788999999999987652        2344556666655554

>PRK08084 DNA replication initiation factor; Provisional

Probab=87.30  E-value=0.41  Score=49.41  Aligned_cols=47  Identities=13%  Similarity=0.354  Sum_probs=29.7

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..+..  ++...+.. +..+..   ......++-||++|+||||.+.+
T Consensus        18 ~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a   64 (235)
T PRK08084         18 DETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA   64 (235)
T ss_pred             cCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence            5788865544  44555544 333322   22235789999999999996654

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=87.04  E-value=2.2  Score=51.02  Aligned_cols=70  Identities=20%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEE-----EecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYV-----NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK  203 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~-----~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~  203 (932)
                      .|.|.||+.-|.+|||||.+..-    |..+     .+.+.++...-....+..--.+.|..|..|||---++.|++..
T Consensus        83 ~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~  161 (674)
T cd01378          83 ENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDF  161 (674)
T ss_pred             cCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECC
Confidence            58999999999999999986432    1111     1222333221112222233456799999999987787777743

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>KOG3859|consensus

Probab=87.02  E-value=39  Score=34.70  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             HhcCCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc
Q psy16994        131 RYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE  210 (932)
Q Consensus       131 ~~~~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~  210 (932)
                      ++-.|+.-.|++.|.||.|||+.|-.              ++     |     |.+... .-+|..-++.+....-.-..
T Consensus        36 sv~~GF~FNilCvGETg~GKsTLmdt--------------LF-----N-----t~f~~~-p~~H~~~~V~L~~~TyelqE   90 (406)
T KOG3859|consen   36 SVSQGFCFNILCVGETGLGKSTLMDT--------------LF-----N-----TKFESE-PSTHTLPNVKLQANTYELQE   90 (406)
T ss_pred             HHhcCceEEEEEeccCCccHHHHHHH--------------Hh-----c-----cccCCC-CCccCCCCceeecchhhhhh
Confidence            45589999999999999999873321              11     1     111111 12466666666544322223


Q ss_pred             ceeEEEEEEEeCCCCcc
Q psy16994        211 LIMMSSFDICDLAGAER  227 (932)
Q Consensus       211 ~~~~s~l~~vDLagse~  227 (932)
                      +...-+|++||.+|.-.
T Consensus        91 snvrlKLtiv~tvGfGD  107 (406)
T KOG3859|consen   91 SNVRLKLTIVDTVGFGD  107 (406)
T ss_pred             cCeeEEEEEEeeccccc
Confidence            44567899999999754

>PRK08181 transposase; Validated

Probab=86.76  E-value=0.61  Score=48.85  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=26.6

Q ss_pred             eeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHHhh
Q psy16994        139 LLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLRFG  175 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~~g  175 (932)
                      .|+-||++|+||||...++        ..|...++.+++.-|..+
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a  152 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA  152 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH
Confidence            3888999999999976552        235556677777777554

>PRK08939 primosomal protein DnaI; Reviewed

Probab=86.75  E-value=0.41  Score=51.34  Aligned_cols=70  Identities=17%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCC-CCceeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHHhh
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNG-EDALLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLRFG  175 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g-~~~~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~~g  175 (932)
                      .+|+.+-....+...++.. +..++..+..| ....++.||++|+||||.+.++        ..+.+-++.+++.-|..+
T Consensus       124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~  202 (306)
T PRK08939        124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS  202 (306)
T ss_pred             CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence            3455544333355666664 46677766554 3456889999999999976651        233444555665555443

>cd00124 MYSc Myosin motor domain

Probab=86.62  E-value=1.8  Score=52.20  Aligned_cols=76  Identities=18%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             HHHHHhc-CCCCceeeecccccCCCcEEEec----ceEEEe---cCHHHHHHHHHhhhhccccccccCccCCCCCccEEE
Q psy16994        127 NMLERYL-NGEDALLFSFGTTNSGKTFTIQD----LTYVNV---HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFS  198 (932)
Q Consensus       127 ~~v~~~~-~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v---~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~  198 (932)
                      ..+..++ .|.|.||+.-|.+|||||.+..-    |..+..   .+..+-..-....+..--.+.|..|..|||---++.
T Consensus        75 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~  154 (679)
T cd00124          75 RAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIE  154 (679)
T ss_pred             HHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEE
Confidence            3344433 58999999999999999975332    222221   122332222222233334578999999999777777


Q ss_pred             EEEE
Q psy16994        199 IKLV  202 (932)
Q Consensus       199 i~v~  202 (932)
                      |.+.
T Consensus       155 l~f~  158 (679)
T cd00124         155 LQFD  158 (679)
T ss_pred             EEEC
Confidence            7764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=86.32  E-value=78  Score=37.45  Aligned_cols=11  Identities=18%  Similarity=0.163  Sum_probs=5.0

Q ss_pred             CCCCcccchhHH
Q psy16994          8 EQPGIIPRTLNI   19 (932)
Q Consensus         8 ~~~Gi~pr~ldv   19 (932)
                      .|.+.++ .||-
T Consensus         4 sQv~tVq-GLDr   14 (861)
T PF15254_consen    4 SQVETVQ-GLDR   14 (861)
T ss_pred             hhcchhc-chHH
Confidence            3444444 4553

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=86.18  E-value=0.64  Score=48.40  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhh
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFG  175 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g  175 (932)
                      .|.|..+-.+...+..+|.. +..++..+.  ....++-||++|+||||...+        -..|.+.++.+++.-|..+
T Consensus        75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~  151 (254)
T COG1484          75 TFEEFDFEFQPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA  151 (254)
T ss_pred             CcccccccCCcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence            34444444444556667765 566666666  334456699999999996443        2334444555666555554


Q ss_pred             h
Q psy16994        176 K  176 (932)
Q Consensus       176 ~  176 (932)
                      .
T Consensus       152 ~  152 (254)
T COG1484         152 F  152 (254)
T ss_pred             H
Confidence            3

>KOG4677|consensus

Probab=86.14  E-value=57  Score=35.71  Aligned_cols=9  Identities=33%  Similarity=0.737  Sum_probs=6.0

Q ss_pred             ccccccccc
Q psy16994        923 ITPRRIFFL  931 (932)
Q Consensus       923 ~~~~~~~~~  931 (932)
                      -|+.||||.
T Consensus       524 ~psArif~~  532 (554)
T KOG4677|consen  524 LPSARIFWK  532 (554)
T ss_pred             CchhHHHHH
Confidence            356788874

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=85.92  E-value=2.6  Score=50.40  Aligned_cols=70  Identities=20%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEE--ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN--VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK  203 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~--v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~  203 (932)
                      .|.|.||+.-|.+|||||.+..-    |..+.  ..+.++-.--....+..--.+.|..|..|||---++.|++..
T Consensus        83 ~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~  158 (671)
T cd01381          83 EKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNK  158 (671)
T ss_pred             cCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence            58999999999999999986332    11111  011222111111112222456789999999988888887743

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=85.80  E-value=9  Score=29.62  Aligned_cols=50  Identities=12%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16994        803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ  852 (932)
Q Consensus       803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~  852 (932)
                      ......+..++...+...-.....+.+...+...+...+..|+.+|++..
T Consensus        10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455566666666666666666666666666666666666666666543

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=85.73  E-value=0.61  Score=53.05  Aligned_cols=69  Identities=20%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc----------eEEEecCHHHHHHHHH
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL----------TYVNVHSCEEAYRVLR  173 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl----------~~~~v~s~~~~~~~l~  173 (932)
                      .|+||..+.. .++...|.. +..+...--..+| .+|-||++|+||||.+..+          ..+..-+.+++..-+.
T Consensus       111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~  187 (450)
T PRK14087        111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV  187 (450)
T ss_pred             ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            4899986644 445555543 4444432111233 5788999999999977551          2344455566666554


Q ss_pred             hh
Q psy16994        174 FG  175 (932)
Q Consensus       174 ~g  175 (932)
                      .+
T Consensus       188 ~~  189 (450)
T PRK14087        188 DI  189 (450)
T ss_pred             HH
Confidence            43

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=85.36  E-value=0.74  Score=53.48  Aligned_cols=50  Identities=18%  Similarity=0.239  Sum_probs=32.6

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..+.... +.-.|.. +..++...-.++|. ||-||.+|+||||.+..
T Consensus       284 ~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A  333 (617)
T PRK14086        284 KYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA  333 (617)
T ss_pred             CCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence            689988665333 3344433 44455543345665 78999999999997654

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=85.24  E-value=2.6  Score=50.14  Aligned_cols=70  Identities=24%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEE---EecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYV---NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK  203 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~---~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~  203 (932)
                      .+.|-||+.-|.+|||||.+..-    |..+   ...+.++-..-.......--.+.|..|..|||---++.|.+..
T Consensus        83 ~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~  159 (653)
T cd01379          83 YNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTR  159 (653)
T ss_pred             cCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECC
Confidence            48899999999999999986432    1111   1112333222222223333457899999999988788887743

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>KOG4460|consensus

Probab=85.20  E-value=71  Score=35.96  Aligned_cols=9  Identities=33%  Similarity=0.372  Sum_probs=4.0

Q ss_pred             HHHHHHHHH
Q psy16994        310 TVQVLKISS  318 (932)
Q Consensus       310 t~~~l~~~~  318 (932)
                      .|+.|-|++
T Consensus       445 ~L~~l~~~S  453 (741)
T KOG4460|consen  445 SLQELSTES  453 (741)
T ss_pred             HHHhhhhhh
Confidence            344444444

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=84.78  E-value=2.1  Score=51.22  Aligned_cols=70  Identities=21%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             CCCCceeeecccccCCCcEEEec----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK  203 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~  203 (932)
                      .|.|.||+.-|.+|||||.+..-          ...-...+.++-..-.......--.+.|..|..|||---++.|++..
T Consensus        85 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  164 (674)
T cd01384          85 EGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDD  164 (674)
T ss_pred             cCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECC
Confidence            58999999999999999986322          11111123333222222223333457799999999988888887743

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>KOG2991|consensus

Probab=84.71  E-value=46  Score=33.41  Aligned_cols=19  Identities=16%  Similarity=0.202  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy16994        524 LVTKNKELEGKVAQLSRRV  542 (932)
Q Consensus       524 l~~~~~~l~~~~~~l~~~~  542 (932)
                      +...+..++..-..+..+.
T Consensus       106 l~d~i~nLk~se~~lkqQ~  124 (330)
T KOG2991|consen  106 LSDDITNLKESEEKLKQQQ  124 (330)
T ss_pred             hHHHHHhhHHHHHHHHHHH
Confidence            3444444444444444433

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=84.68  E-value=76  Score=35.83  Aligned_cols=46  Identities=11%  Similarity=0.105  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q psy16994        486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL  531 (932)
Q Consensus       486 i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l  531 (932)
                      ...+..++..+......++...-.+-.++..+...+.....++..+
T Consensus        22 ~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l   67 (531)
T PF15450_consen   22 VAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQL   67 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444344444444433333333333333

>PRK08727 hypothetical protein; Validated

Probab=84.56  E-value=0.44  Score=49.05  Aligned_cols=46  Identities=17%  Similarity=0.264  Sum_probs=26.4

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..+.. .++  .+.. +.++.   .......|+-||++|+||||.+..
T Consensus        15 ~~~f~~f~~~-~~n--~~~~-~~~~~---~~~~~~~l~l~G~~G~GKThL~~a   60 (233)
T PRK08727         15 DQRFDSYIAA-PDG--LLAQ-LQALA---AGQSSDWLYLSGPAGTGKTHLALA   60 (233)
T ss_pred             cCChhhccCC-cHH--HHHH-HHHHH---hccCCCeEEEECCCCCCHHHHHHH
Confidence            4788886643 332  2221 12221   122234589999999999995543

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=84.47  E-value=3.7  Score=49.37  Aligned_cols=70  Identities=20%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceE------------EEecCHHHHHHHHHhhhhccccccccCccCCCCCccEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTY------------VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF  197 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~------------~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~  197 (932)
                      .|.|.||+.-|.+|||||.+..-    |..            ....+.++-+.-....+..--.+.|..|..|||---++
T Consensus        88 ~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i  167 (693)
T cd01377          88 DRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFI  167 (693)
T ss_pred             cCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence            58999999999999999975322    111            11223333222222233334457899999999987777


Q ss_pred             EEEEEE
Q psy16994        198 SIKLVK  203 (932)
Q Consensus       198 ~i~v~~  203 (932)
                      .|.+..
T Consensus       168 ~l~f~~  173 (693)
T cd01377         168 RIHFGN  173 (693)
T ss_pred             EEEECC
Confidence            777643

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=84.25  E-value=76  Score=35.49  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHH
Q psy16994        485 KIQNLKQELSELEAKYKSLS  504 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~  504 (932)
                      ++..|..++.++..++....
T Consensus        95 kl~RL~~Ev~EL~eEl~~~~  114 (388)
T PF04912_consen   95 KLQRLRREVEELKEELEKRK  114 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            56666666666666555543

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=84.12  E-value=3.4  Score=49.64  Aligned_cols=70  Identities=21%  Similarity=0.152  Sum_probs=44.6

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceE--------EEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTY--------VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL  201 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~--------~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v  201 (932)
                      .|.|.||+.-|.+|||||.+..-    |..        ....+.++-+.-...-+..--.+.|..|..|||---++.|+.
T Consensus        83 ~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f  162 (691)
T cd01380          83 DEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILF  162 (691)
T ss_pred             cCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEE
Confidence            69999999999999999975322    111        112334332222222233334577999999999877777766


Q ss_pred             EE
Q psy16994        202 VK  203 (932)
Q Consensus       202 ~~  203 (932)
                      ..
T Consensus       163 ~~  164 (691)
T cd01380         163 DK  164 (691)
T ss_pred             CC
Confidence            43

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=83.92  E-value=0.65  Score=51.68  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=19.0

Q ss_pred             HHHHhc-CCCCceeeecccccCCCcEE
Q psy16994        128 MLERYL-NGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       128 ~v~~~~-~g~~~~i~~~G~tgsGKt~t  153 (932)
                      .+..++ .+...+++-||++|+|||++
T Consensus        30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l   56 (365)
T TIGR02928        30 ALRPILRGSRPSNVFIYGKTGTGKTAV   56 (365)
T ss_pred             HHHHHHcCCCCCcEEEECCCCCCHHHH
Confidence            334434 35567899999999999984

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>KOG0243|consensus

Probab=83.89  E-value=1.2e+02  Score=37.58  Aligned_cols=18  Identities=28%  Similarity=0.290  Sum_probs=10.7

Q ss_pred             cHHHHHHHHHHHHHhccc
Q psy16994        306 YAEETVQVLKISSVARDL  323 (932)
Q Consensus       306 ~~~et~~~l~~~~~~~~i  323 (932)
                      ..++-+..|.-++.=|++
T Consensus       237 ~A~ei~klLekGs~kRrt  254 (1041)
T KOG0243|consen  237 NADEIYKLLEKGSKKRRT  254 (1041)
T ss_pred             chhHHHHHHHhhhhHhHH
Confidence            456666666666655554

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=83.77  E-value=92  Score=36.06  Aligned_cols=8  Identities=50%  Similarity=0.908  Sum_probs=4.0

Q ss_pred             ccccCCCc
Q psy16994        144 GTTNSGKT  151 (932)
Q Consensus       144 G~tgsGKt  151 (932)
                      |-||+|||
T Consensus        29 GETGAGKS   36 (557)
T COG0497          29 GETGAGKS   36 (557)
T ss_pred             cCCCCcHh
Confidence            55555553

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=83.74  E-value=0.68  Score=53.03  Aligned_cols=50  Identities=20%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||.... ..++...|.. +..+....-..+ ..++-||++|+||||.+..
T Consensus       118 ~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~-~~l~l~G~~G~GKThL~~a  167 (450)
T PRK00149        118 KYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAY-NPLFIYGGVGLGKTHLLHA  167 (450)
T ss_pred             CCccccccc-CCCcHHHHHH-HHHHHhCcCccC-CeEEEECCCCCCHHHHHHH
Confidence            688888543 2344445544 344444321223 4578899999999997644

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=83.27  E-value=0.84  Score=46.87  Aligned_cols=47  Identities=21%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~  155 (932)
                      .|+||.+++. .. ..++. .+..++..  .+.+..++-||++|+||||.+.
T Consensus        14 ~~~~d~f~~~-~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~   60 (227)
T PRK08903         14 PPTFDNFVAG-EN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ   60 (227)
T ss_pred             hhhhcccccC-Cc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence            4788887732 22 23332 24444432  2445678999999999999543

>smart00053 DYNc Dynamin, GTPase

Probab=83.17  E-value=0.8  Score=47.02  Aligned_cols=51  Identities=12%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcc
Q psy16994        163 HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAER  227 (932)
Q Consensus       163 ~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~  227 (932)
                      .+++++...+......-  ..+    ...-|.-++.|+|...+        .-.|+||||+|-.+
T Consensus        87 ~~~~~v~~~i~~~~~~~--~~~----~~~~s~~~i~l~i~~p~--------~~~ltLIDlPGl~~  137 (240)
T smart00053       87 TDFDEVRNEIEAETDRV--TGT----NKGISPVPINLRVYSPH--------VLNLTLIDLPGITK  137 (240)
T ss_pred             CCHHHHHHHHHHHHHHh--cCC----CCcccCcceEEEEeCCC--------CCceEEEeCCCccc
Confidence            46777777776543321  111    12345667777775532        24799999999964

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.17  E-value=36  Score=36.20  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=15.1

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHH
Q psy16994        795 LEASAATPSQYRKQLEDQVNSLKAELEQ  822 (932)
Q Consensus       795 L~~~l~~~~~~~~~l~~e~~~l~~el~~  822 (932)
                      |.-++..+..+...|.+++..|+..++.
T Consensus       217 LDvRLkKl~~eke~L~~qv~klk~qLee  244 (302)
T PF09738_consen  217 LDVRLKKLADEKEELLEQVRKLKLQLEE  244 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555566666665555543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG1514|consensus

Probab=82.88  E-value=0.77  Score=52.90  Aligned_cols=54  Identities=20%  Similarity=0.371  Sum_probs=40.1

Q ss_pred             HHHHHHHhc--CCCCceeeecccccCCCcEEEec---------------------ceEEEecCHHHHHHHHHhhhhc
Q psy16994        125 VHNMLERYL--NGEDALLFSFGTTNSGKTFTIQD---------------------LTYVNVHSCEEAYRVLRFGKSH  178 (932)
Q Consensus       125 ~~~~v~~~~--~g~~~~i~~~G~tgsGKt~t~~G---------------------l~~~~v~s~~~~~~~l~~g~~~  178 (932)
                      +..++..++  +|-.+|+.--|..|||||.|+.+                     +-...+.++.+++..|......
T Consensus       408 I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg  484 (767)
T KOG1514|consen  408 IEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSG  484 (767)
T ss_pred             HHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhccc
Confidence            445555554  36667999999999999999887                     3345678899999888765543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=82.82  E-value=0.82  Score=51.92  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..+. ..++.-.|.. +..+... ...+| .+|-||++|+||||.+..
T Consensus       101 ~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n-~l~lyG~~G~GKTHLl~a  149 (440)
T PRK14088        101 DYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYN-PLFIYGGVGLGKTHLLQS  149 (440)
T ss_pred             CCccccccc-CCchHHHHHH-HHHHHhC-cCCCC-eEEEEcCCCCcHHHHHHH
Confidence            689998764 3455555654 3333332 12255 489999999999997764

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=82.66  E-value=3.1  Score=49.93  Aligned_cols=69  Identities=20%  Similarity=0.098  Sum_probs=43.6

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEE-----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN-----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV  202 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~-----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~  202 (932)
                      .|.|-||+.-|.+|||||.+..-    |..+.     ..+.++-+.--...+..--.+.|..|..|||---++.|+..
T Consensus        91 ~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~  168 (692)
T cd01385          91 KKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYR  168 (692)
T ss_pred             cCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEEC
Confidence            58899999999999999986432    11110     11233211111122223345779999999998888888774

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=82.18  E-value=0.87  Score=51.29  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=16.4

Q ss_pred             CCCCceeeecccccCCCcEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t  153 (932)
                      .+....++-||++|+|||++
T Consensus        52 ~~~~~~~lI~G~~GtGKT~l   71 (394)
T PRK00411         52 GSRPLNVLIYGPPGTGKTTT   71 (394)
T ss_pred             CCCCCeEEEECCCCCCHHHH
Confidence            44556789999999999984

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=81.17  E-value=5.2  Score=48.29  Aligned_cols=70  Identities=19%  Similarity=0.040  Sum_probs=43.8

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEEe--cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVNV--HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK  203 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v--~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~  203 (932)
                      .|.|.||+.-|.+|||||.+..-    |..+.-  .+.++-+.-....+..--.+.|..|..|||---++.|.+..
T Consensus        88 ~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  163 (717)
T cd01382          88 LKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  163 (717)
T ss_pred             cCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECC
Confidence            68999999999999999986432    111100  12222221112223333457799999999987777777643

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=81.15  E-value=0.86  Score=46.71  Aligned_cols=46  Identities=28%  Similarity=0.490  Sum_probs=29.5

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~  155 (932)
                      .|+||....+  .+..++.. +..++   ..+....|+-||++|+||||.+.
T Consensus        11 ~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~   56 (226)
T TIGR03420        11 DPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ   56 (226)
T ss_pred             chhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence            4777776632  33444443 22322   24567789999999999998653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=81.09  E-value=3.5  Score=49.43  Aligned_cols=68  Identities=24%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEE---ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN---VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL  201 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~---v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v  201 (932)
                      .|.|-||+.-|.+|||||.+..-    +..+.   -.+..+-..-....+..--.+.|..|..|||---++.|..
T Consensus        84 ~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f  158 (677)
T cd01387          84 AKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL  158 (677)
T ss_pred             cCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEe
Confidence            68999999999999999986432    11111   0112221111111222234577999999999877887766

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=80.77  E-value=70  Score=39.20  Aligned_cols=17  Identities=18%  Similarity=0.174  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy16994        244 INSSLHVLARCFNVLRE  260 (932)
Q Consensus       244 in~sl~~l~~~i~~l~~  260 (932)
                      |=+|-..+++||..|.-
T Consensus        93 iLkSr~v~~~VV~~L~L  109 (726)
T PRK09841         93 LLQSRMILGKTIAELNL  109 (726)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            44677777777777753

>PF13245 AAA_19: Part of AAA domain

Probab=80.19  E-value=0.45  Score=39.00  Aligned_cols=19  Identities=32%  Similarity=0.478  Sum_probs=14.1

Q ss_pred             CceeeecccccCCCcEEEe
Q psy16994        137 DALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~t~~  155 (932)
                      +..++..|+.|||||+|+.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLA   28 (76)
T ss_pred             CCeEEEECCCCCCHHHHHH
Confidence            4445558999999998654

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=80.15  E-value=1.2  Score=50.29  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             cceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       103 ~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      ..|+||.... ..++...|.. +..+.... .+....++-||++|+||||.+..
T Consensus       105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~-~~~~n~l~l~G~~G~GKThL~~a  155 (405)
T TIGR00362       105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENP-GKAYNPLFIYGGVGLGKTHLLHA  155 (405)
T ss_pred             CCCccccccc-CCcHHHHHHH-HHHHHhCc-CccCCeEEEECCCCCcHHHHHHH
Confidence            3688988443 3444445543 44444432 22223578899999999997643

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=80.08  E-value=1.3e+02  Score=35.31  Aligned_cols=14  Identities=29%  Similarity=0.437  Sum_probs=12.0

Q ss_pred             cccccCCCcEEEec
Q psy16994        143 FGTTNSGKTFTIQD  156 (932)
Q Consensus       143 ~G~tgsGKt~t~~G  156 (932)
                      .|..|+||++||.|
T Consensus        33 SGGNGAGKSTTMA~   46 (1480)
T COG3096          33 SGGNGAGKSTTMAA   46 (1480)
T ss_pred             cCCCCCcccchHHH
Confidence            36678999999999

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=80.02  E-value=0.77  Score=46.36  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             HHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      +.+++.++.-..-+.|+..|+||||||+||..
T Consensus       115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAa  146 (375)
T COG5008         115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAA  146 (375)
T ss_pred             CcHHHHHhhcccCceEEEECCCCCCchhhHHH
Confidence            55667777777888999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	932
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		3e-21
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		2e-19
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		3e-19
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		5e-19
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		5e-19
4a28_A	368	Eg5-2 Length = 368		5e-19
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		5e-19
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		6e-19
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		6e-19
4a1z_A	368	Eg5-1 Length = 368		6e-19
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		8e-19
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		1e-18
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		3e-18
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		6e-18
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		9e-18
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		1e-17
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		2e-17
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		9e-17
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		9e-17
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		1e-16
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		1e-16
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		1e-16
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		1e-16
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		2e-16
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		5e-16
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		7e-16
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		7e-16
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		8e-16
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		1e-15
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		1e-15
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		3e-15
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		6e-15
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		1e-14
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		4e-14
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		6e-14
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		7e-14
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		9e-14
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-13
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-13
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-13
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		2e-12
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		2e-12
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		2e-12
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		3e-11
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		8e-10
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		9e-10
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		1e-09
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		1e-09
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		1e-09
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		7e-09
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		1e-08
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		2e-08
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		4e-08
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		5e-08
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		1e-07

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF--SIKLVKVDPGSEEL 211
           ++DL+     S +E   V+  G  + SV  T +N  SSRSH +F  +I+  +V    E  
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           I +   ++ DLAG+ERQ +    G+RL+EA  IN SL  L    + L +       K   
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 302
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           IP+RDSKLT++ Q SL G + TV M+ NV  +    EET+  L+ ++ A+++
Sbjct: 303 IPYRDSKLTRLLQDSLGGNAKTV-MVANVGPASYNVEETLTTLRYANRAKNI 353

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK--VDPGSEEL 211
           ++ L  + V S +E Y V+R G +  +VA T +N  SSRSH +F I + +  V+ GS + 
Sbjct: 169 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAK- 227
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
                  + DLAG+E+  +   SG  L EA+ IN SL  L    N L +       K   
Sbjct: 228 --SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSH 279
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           +P+RDSKLT+I Q SL G S T  +I+N + S     ET+  L+    A+ +
Sbjct: 280 VPYRDSKLTRILQESLGGNSRTT-LIINCSPSSYNDAETLSTLRFGMRAKSI 330

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 198 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 255
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 256 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 308
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 309 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 362

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 252
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 253 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 305
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 306 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 359

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 187 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 244
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 297
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 298 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 351

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPGSEEL 211
           ++DLT V V   EE  R +R G    +VA T++N  SSRSH VF+I L ++  D  +++ 
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT 288
Query: 212 IMMSS-FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL--------RENN 262
              SS   + DLAG+ER K    +G RLRE   IN SL  L R    L        R ++
Sbjct: 289 TERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSS 348
Query: 263 GLKADKKK-------LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
            +K+ + +       ++P+RDS LT + + SL G S T  MI  +  SP   +ET+  L+
Sbjct: 349 PVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDETLSTLR 405
Query: 316 ISSVARDLLTVA 327
            +  A+ + T A
Sbjct: 406 YADQAKRIRTRA 417

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
           I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +      +D   E
Sbjct: 181 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 238
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           EL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L E       + 
Sbjct: 239 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 291
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 292 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 345

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 12/213 (5%)
Query: 111 YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYR 170
           Y    + AE++  ++ ++L +    ++ L        SG+ + +  LT   V S ++  +
Sbjct: 128 YTITVSAAEIYNEVLRDLLGK--EPQEKLEIRLCPDGSGQLY-VPGLTEFQVQSVDDINK 184
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           V  FG ++ +   T LN  SSRSH +  + +  VD  S  L      ++ DLAG+ER  +
Sbjct: 185 VFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC-STGLRTTGKLNLVDLAGSERVGK 243
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
           +   G RLREA+ IN SL  L      LR   G        +PFR+SKLT + Q SLSG 
Sbjct: 244 SGAEGSRLREAQHINKSLSALGDVIAALRSRQG-------HVPFRNSKLTYLLQDSLSGD 296
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           S T+ M+V V+       ET+  LK +   R +
Sbjct: 297 SKTL-MVVQVSPVEKNTSETLYSLKFAERVRSV 328

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
           KT  I ++T   + S +   +VL+      S A T  N  SSRSH +F I L   + G+ 
Sbjct: 198 KTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTG 257
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           E       ++ DLAG+ER   +   G+RLRE ++IN SL  L    + L   +G    +K
Sbjct: 258 EK-SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG----QK 312
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
           + IPFR+SKLT + Q SL G S T+ M VN++ +  +  ET+  L+ +S
Sbjct: 313 RHIPFRNSKLTYLLQYSLIGSSKTL-MFVNISPAALHLNETINSLRFAS 360

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 160 VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----------KLVKVDPGSE 209
           V+V   +E   +L  G +      T LNH SSRSH VF++          +L +  PG  
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ- 239
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
             +++S F   DLAG+ER  +  ++G+RL+E+  INSSL  L    + L    G    + 
Sbjct: 240 --LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL----GDPQRRG 293
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             IP+RDSK+T+I + SL G + TV MI  V+ S +  +ET+  L  +S A+
Sbjct: 294 SHIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 151 TFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--S 208
           +  IQ L  + VHS ++ Y++L  GK     A T +N +SSRSH VFSI +   + G   
Sbjct: 194 SVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253
Query: 209 EELIMMSSFDICDLAGAERQKRAHT-SGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
           E+++ +   ++ DLAG+E   +A    G R+RE   IN SL  L R    L        D
Sbjct: 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL-------VD 306
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           +   +P+R+SKLT++ Q SL G + T  +I  ++      EET+  L+ +  A+++
Sbjct: 307 RAPHVPYRESKLTRLLQESLGGRTKT-SIIATISPGHKDIEETLSTLEYAHRAKNI 361

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SSRSH +F I L     GS       S+   ++ DLAG+ER   +   GD
Sbjct: 260 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 315
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + IN SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 316 RLRETQNINKSLSALGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 370
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 371 FVNISPSSSHINETLNSLRFAS 392

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 148 SGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207
           +GKT T+ +++ +++ S E+A  +L       S A T+ N  SSRSH +F I L     G
Sbjct: 545 AGKT-TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL----QG 599
Query: 208 SEELIMMSSF---DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
              L   SS+   ++ DLAG+ER   +   GDRL+E + IN SL  L    + L   +G 
Sbjct: 600 YNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDG- 658
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
                  +P+R+SKLT + + SL G S T+ M VN++       ET+  L+ ++
Sbjct: 659 -----SHVPYRNSKLTYLLKHSLGGNSKTL-MFVNISPLTKDLNETINSLRFAT 706

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SSRSH +F I L     GS       S+   ++ DLAG+ER   +   GD
Sbjct: 215 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 270
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + IN SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 271 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 325
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 326 FVNISPSSSHINETLNSLRFAS 347

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SSRSH +F I L     GS       S+   ++ DLAG+ER   +   GD
Sbjct: 203 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 258
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + IN SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 259 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 313
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 314 FVNISPSSSHINETLNSLRFAS 335

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
           G  F ++++T + + + EE   +L  G     V+ T +N  SSRSH + S+ +  +D  +
Sbjct: 171 GMVF-VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQT 229
Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
           +           DLAG+ER K++ ++G++L+EA++IN SL  L      L   N      
Sbjct: 230 QS-AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN------ 282
Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
            + IP+R+ KLT +   SL G + T+ M VNV+ + +  +ET   L  +S  R ++
Sbjct: 283 -QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNVSPAESNLDETYNSLLYASRVRTIV 336

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 7/176 (3%)
Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
           K   +  LT     S EE   +L  G  + +  PT++N  SSRSH VF I L + D  + 
Sbjct: 185 KGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244
Query: 210 --ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
             + + ++   + DLAG+ER   +   G R  E   IN SL  L    N L ++      
Sbjct: 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK----R 300
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           K + IP+R+SKLT++ + SL G   T+ MI  V+ S  + ++T   LK ++ A+D+
Sbjct: 301 KNQHIPYRNSKLTRLLKDSLGGNCQTI-MIAAVSPSSVFYDDTYNTLKYANRAKDI 355

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL------VKVDPG 207
           +  L+ + V S ++   ++  G    +VA T +N  SSRSH VF I L      VK    
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
            E++  +S   + DLAG+ER  +   +GDRL+E   IN SL  L    + L + +  K +
Sbjct: 240 GEKVGKLS---LVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGK-N 295
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
           K K +P+RDS LT + + SL G S T  M+  V+ +    +ET+  L+ +  A+
Sbjct: 296 KNKFVPYRDSVLTWLLKDSLGGNSKTA-MVATVSPAADNYDETLSTLRYADRAK 348

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           I ++T + + S  +   +L+      S A T  N RSSRSH VF + +   +  + E   
Sbjct: 181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE-TS 239
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
               ++ DLAG+ER   +  +G+RLRE + IN SL  L      L   +      K+ IP
Sbjct: 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA----GKRYIP 295
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
           FR+SKLT + Q SL G S T+ M VN+   P +  ET+  L+ +S
Sbjct: 296 FRNSKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETLNSLRFAS 339

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SSRSH +F I L     GS       S+   ++ DLAG+ R   +   GD
Sbjct: 204 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + IN SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 160 VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----------KLVKVDPGSE 209
           V+V   +E   +L  G +      T LNH SSRSH VF++          +L +  PG  
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQ- 239
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
             +++S F   DLAG+ER  +  ++G+  +E+  INSSL  L    + L    G    + 
Sbjct: 240 --LLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISAL----GDPQRRG 293
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             IP+RDSK+T+I + SL G + TV MI  V+ S +  +ET+  L  +S A+
Sbjct: 294 SNIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SS SH +F I L     GS       S+   ++ DLAG+ER   +   GD
Sbjct: 204 STASTASNEHSSASHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + IN SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
           S A T  N  SSRSH +F I L     GS       S+   ++ DLAG+ER   +   GD
Sbjct: 204 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
           RLRE + I  SL  L    + L    G     K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNIKKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
            VN++ S ++  ET+  L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +S    +++++T V++ + EE   +++ G        T +N +SSRSH + S+ +++   
Sbjct: 160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV-IIESTN 218
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
              + I        DLAG+ER K++ ++G++L+EA++IN SL  L    + L   N    
Sbjct: 219 LQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN---- 274
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
              + IP+R+ KLT +   SL G + T+ M VN++ + +  +ET   L  +S  R ++
Sbjct: 275 ---QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLTYASRVRSIV 328

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG----SE 209
           + DLT   V++ E A + +  G+       T++N RSSRSH +F + L   + G     E
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
             + +S  ++ DLAG+ER  +   +G RL+E   IN SL +L +    L +         
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-----GQVG 277
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
             I +RDSKLT+I Q SL G + T ++I  +  +P   +ET+  L+ +S A+
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKT-RIICTI--TPVSFDETLTALQFASTAK 326

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V S E+ + V+  GKS+  +A T +N  SSRSH VF I  VK +    +  +     + D
Sbjct: 180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLIN-VKQENLENQKKLSGKLYLVD 238
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
           LAG+E+  +    G  L EA+ IN SL  L    + L + N      K  IP+RDSKLT+
Sbjct: 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN------KTHIPYRDSKLTR 292
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
           I Q SL G + T  +I     SPA   E+
Sbjct: 293 ILQESLGGNARTTIVIC---CSPASFNES 318

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELIMMSSFDICDLAG 224
           E+A+ +L  G+++  +A   +N  SSRSHC+F+I L       SEE  + S  ++ DLAG
Sbjct: 208 EDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAG 267
Query: 225 AERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQ 284
           +ER  ++ + G  L+EA  IN SL  L +    L +       K+  IPFR  KLT   +
Sbjct: 268 SERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ------KRDHIPFRQCKLTHALK 321
Query: 285 RSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
            SL G  + V ++ N+    A  EET+  L+ +S
Sbjct: 322 DSLGGNCNMV-LVTNIYGEAAQLEETLSSLRFAS 354

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG----SE 209
           +  L+   V +  E   ++  G ++  VA T++N  SSRSH +F   +V+++      ++
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIF---MVRIECSEVIENK 229
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           E+I +   ++ DLAG+ERQ +   +G+ L E   IN SL  L    + L E         
Sbjct: 230 EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-------A 282
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
             IP+RDSKLT++ Q SL G S T+ M  N++ +    +ET+  L+ +  A+ +
Sbjct: 283 THIPYRDSKLTRLLQDSLGGNSKTL-MCANISPASTNYDETMSTLRYADRAKQI 335

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53  QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
            AF+     + ++ Q+ AG ++  +  +  DQ+ I+ +  +D+   I DT N     N+ 
Sbjct: 100 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 155
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
           Y    +  E++   V ++L     G     E  LL  +          ++DL+ + V S 
Sbjct: 156 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 205
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
            +   ++  G    +VA T +N  SSRSH VF+I   +    +E  I    +S   + DL
Sbjct: 206 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 265
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
           AG+ER       G RL+E   IN SL  L +  + L E +       K  K   IP+RDS
Sbjct: 266 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 325
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
            LT + + +L G S T  M+  ++ +    +ET+  L+ +  A+ +
Sbjct: 326 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 370

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 16/149 (10%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM----SSFDICDLAGAERQKRAHTSG 235
           +V  T LN RSSRSH V    LVKVD   E L           + DLAG+E  +R    G
Sbjct: 212 TVGATRLNQRSSRSHAVL---LVKVD-QRERLAPFRQREGKLYLIDLAGSEDNRRTGNKG 267
Query: 236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
            RL+E+  IN+SL VL +  + L  N GL       +P+RDSKLT++ Q SL G + ++ 
Sbjct: 268 LRLKESGAINTSLFVLGKVVDAL--NQGLPR-----VPYRDSKLTRLLQDSLGGSAHSI- 319
Query: 296 MIVNVNASPAYAEETVQVLKISSVARDLL 324
           +I N+     +  +TV  L  ++ +++++
Sbjct: 320 LIANIAPERRFYLDTVSALNFAARSKEVI 348

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53  QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
            AF+     + ++ Q+ AG ++  +  +  DQ+ I+ +  +D+   I DT N     N+ 
Sbjct: 84  HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
           Y    +  E++   V ++L     G     E  LL  +          ++DL+ + V S 
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
            +   ++  G    +VA T +N  SSRSH VF+I   +    +E  I    +S   + DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
           AG+ER       G RL+E   IN SL  L +  + L E +       K  K   IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
            LT + + +L G S T  M+  ++ +    +ET+  L+ +  A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 17/158 (10%)
Query: 152 FTIQDLTYVNVHSCE-EAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE 210
            T+ +  YV V SCE E   +L   + + +VA T  N RSSRSH VF ++ +  +  S  
Sbjct: 210 LTVTNARYVPV-SCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ-ISGEHSSRG 267
Query: 211 LIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNGLKA 266
           L   +   + DLAG+ER       G    +RLRE + INSSL  L      L       +
Sbjct: 268 LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL-------S 320
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 304
           +K+  +P+R+SKLT + Q SL G   + KM++ VN SP
Sbjct: 321 NKESHVPYRNSKLTYLLQNSLGG---SAKMLMFVNISP 355

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53  QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
            AF+     + ++ Q+ AG ++  +  +  DQ+ I+ +  +D+   I DT N     N+ 
Sbjct: 84  HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
           Y    +  E++   V ++L     G     E  LL  +          ++DL+ + V S 
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
            +   ++  G    +VA T +N  SSRSH VF+I   +    +E  I    +S   + DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
           AG+ER       G RL+E   IN SL  L +  + L E +       K  K   IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
            LT + + +L G S T  M+  ++ +    +ET+  L+ +  A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53  QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
            AF+     + ++ Q+ AG ++  +  +  DQ+ I+ +  +D+   I DT N     N+ 
Sbjct: 84  HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
           Y    +  E++   V ++L     G     E  LL  +          ++DL+ + V S 
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
            +   ++  G    +VA T +N  SSRSH VF+I   +    +E  I    +S   + DL
Sbjct: 190 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
           AG+ER       G RL+E   IN SL  L +  + L E +       K  K   IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
            LT + + +L G S T  M+  ++ +    +ET+  L+ +  A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 33/196 (16%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EEL 211
           I+DL+     + +E   V+  G    +V  T +N  SSRSH +F I +   + GS  ++ 
Sbjct: 189 IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDH 248
Query: 212 IMMSSFDICDLAGAERQKRA--HTSG----------------------DRLREARTINSS 247
           I +   ++ DLAG+ERQ +A  +T+G                      +R +EA  IN S
Sbjct: 249 IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLS 308
Query: 248 LHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA 307
           L  L    NV+     L  ++   IP+RDSKLT++ Q SL G + T+ +     AS +Y 
Sbjct: 309 LSALG---NVIA---ALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSY- 361
Query: 308 EETVQVLKISSVARDL 323
           +E++  L+ ++ A+++
Sbjct: 362 DESLSTLRFANRAKNI 377

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V S +E    +  GKS+  VA T +N  SSRSH +F I  VK +    E  +     + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
           LAG+E+  +    G  L EA+ IN SL  L    + L       A+    +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
           I Q SL G   T  +I     SP+   E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V S +E    +  GKS+  VA T +N  SSRSH +F I  VK +    E  +     + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
           LAG+E+  +    G  L EA+ IN SL  L    + L       A+    +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
           I Q SL G   T  +I     SP+   E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V S +E    +  GKS+  VA T +N  SSRSH +F I  VK +    E  +     + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
           LAG+E+  +    G  L EA+ IN SL  L    + L       A+    +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
           I Q SL G   T  +I     SP+   E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V   E+  +++  G S  +   T  N  SSRSH VF I L +         +   F + D
Sbjct: 271 VKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------LHGKFSLID 324
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
           LAG ER     ++  + R E   IN SL  L  C   L  N       K   PFR SKLT
Sbjct: 325 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-------KPHTPFRASKLT 377
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           Q+ + S  G +S   MI  ++   A  E T+  L+ ++  ++L
Sbjct: 378 QVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           ++   K + + A T  N RSSRSH V  ++L+      +E I + S ++ DLAG+E  K 
Sbjct: 251 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 308
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
              +  R+ E + IN SL  L      L +       K+  IP+R+SKLT +   SL G 
Sbjct: 309 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 358
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
           S T+ M +NV+      +E+V+ L+ ++
Sbjct: 359 SKTL-MFINVSPFQDCFQESVKSLRFAA 385

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V+S ++  +++  G +  +   T  N  SSRSH  F I L        +  M   F + D
Sbjct: 233 VNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL------RAKGRMHGKFSLVD 286
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
           LAG ER     ++  + R E   IN SL  L  C   L +N       K   PFR+SKLT
Sbjct: 287 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 339
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           Q+ + S  G +S   MI  ++   +  E T+  L+ +   ++L
Sbjct: 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           ++   K + + A T  N RSSRSH V  ++L+      +E I + S ++ DLAG+E  K 
Sbjct: 243 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 300
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
              +  R+ E + IN SL  L      L +       K+  IP+R+SKLT +   SL G 
Sbjct: 301 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 350
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
           S T+ M +NV+      +E+V+ L+ ++
Sbjct: 351 SKTL-MFINVSPFQDCFQESVKSLRFAA 377

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           ++   K + + A T  N RSSRSH V  ++L+      +E I + S ++ DLAG+E  K 
Sbjct: 237 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 294
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
              +  R+ E + IN SL  L      L +       K+  IP+R+SKLT +   SL G 
Sbjct: 295 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 344
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
           S T+ M +NV+      +E+V+ L+ ++
Sbjct: 345 SKTL-MFINVSPFQDCFQESVKSLRFAA 371

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           ++   K + + A T  N RSSRSH V  ++L+      +E I + S ++ DLAG+E  K 
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 297
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
              +  R+ E + IN SL  L      L +       K+  IP+R+SKLT +   SL G 
Sbjct: 298 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 347
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
           S T+ M +NV+      +E+V+ L+ ++
Sbjct: 348 SKTL-MFINVSPFQDCFQESVKSLRFAA 374

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
           ++   K + + A T  N RSSRSH V  ++L+      +E I + S ++ DLAG+E  K 
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 297
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
              +  R+ E + I  SL  L      L +       K+  IP+R+SKLT +   SL G 
Sbjct: 298 ---TSTRMTETKNIKRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 347
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
           S T+ M +NV+      +E+V+ L+ ++
Sbjct: 348 SKTL-MFINVSPFQDCFQESVKSLRFAA 374

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V   ++  +++  G +  +   T  N  SSRSH  F I L        +  +   F + D
Sbjct: 253 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL------RTKGRLHGKFSLVD 306
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
           LAG ER     ++  + R E   IN SL  L  C   L +N       K   PFR+SKLT
Sbjct: 307 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 359
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           Q+ + S  G +S   MI  ++   +  E T+  L+ +   ++L
Sbjct: 360 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
           V   ++  +++  G +  +   T  N  SSRSH  F I L        +  +   F + D
Sbjct: 181 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL------RTKGRLHGKFSLVD 234
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
           LAG ER     ++  + R E   IN SL  L  C   L +N       K   PFR+SKLT
Sbjct: 235 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 287
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           Q+ + S  G +S   MI  ++   +  E T+  L+ +   ++L
Sbjct: 288 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
           Q  T + +HS  + + +L  G  +  V PT +N  SSRSH + +I +       +     
Sbjct: 182 QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV-------KSKTHH 234
Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
           S  +I DLAG+E  +R    G   +E   IN  L  + +    +       A    +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
           RDS LT + Q SL+   S +  +  ++       ET+  L+  + A+ L
Sbjct: 288 RDSVLTTVLQASLTA-QSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           N  K   ++DL  + V + EE    +  G     +     N  SSRSH + +I L  ++ 
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK 225
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLK 265
            +     +      DLAG+ER     +   + + +   IN SL  L  C   +  +    
Sbjct: 226 NTS----LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD---- 277
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
              K  IPFRDS+LT++ +    G S ++ MI N++ + +  E+T+  L+ SS
Sbjct: 278 ---KNHIPFRDSELTKVLRDIFVGKSKSI-MIANISPTISCCEQTLNTLRYSS 326

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
           Q  T + +HS  + + +L  G  +  V PT +N  SSRSH + +I +       +     
Sbjct: 182 QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV-------KSKTHH 234
Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
           S  +I DLAG+E  +R    G   +E   IN  L  + +    +       A    +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
           RDS LT + Q SL+   S +  +  ++       ET+  L+  + A+
Sbjct: 288 RDSVLTTVLQASLTA-QSYLTFLACISPHQCDLSETLSTLRFGTSAK 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	932
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	2e-41
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	6e-41
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-39
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	2e-39
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	4e-39
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	2e-38
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	2e-07
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	3e-38
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	5e-06
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	4e-38
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	3e-06
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	6e-38
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	3e-04
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	6e-38
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	6e-06
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	7e-38
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	2e-37
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	5e-06
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	4e-37
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	5e-06
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	1e-36
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	4e-06
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	2e-36
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	4e-06
3u06_A	412	Protein claret segregational; motor domain, stalk	2e-36
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	4e-36
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	2e-05
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	7e-36
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	2e-05
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	8e-36
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	4e-35
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	1e-05
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	1e-34
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	2e-34
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	3e-06
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	4e-34
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	2e-05
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	5e-34
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-30
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	3e-06
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	9e-30
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	5e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	4e-12
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	7e-10
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	6e-09
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	5e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	5e-08
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	9e-07
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	2e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	9e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	2e-04
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	2e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	2e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	4e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-04
4dvy_P	877	Cytotoxicity-associated immunodominant antigen; on	5e-04

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  154 bits (392), Expect = 2e-41
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
            KT TI ++T   + S E    +L+      S A T  N  SS SH +F I L   +  +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232

Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
                  + ++ DLAG+ER   +   GDRLRE + IN SL  L    + L + +      
Sbjct: 233 GA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----T 287

Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++  ET+  L+
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLR 333

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  152 bits (387), Expect = 6e-41
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +      +  LT   V S ++  +V  FG ++ +   T LN  SSRSH +  + +  VD 
Sbjct: 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 220

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
            +         ++ DLAG+ER  ++   G RLREA+ IN SL  L      L        
Sbjct: 221 STGL-RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-------R 272

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
            ++  +PFR+SKLT + Q SLSG S T+ M+V V+       ET+  LK
Sbjct: 273 SRQGHVPFRNSKLTYLLQDSLSGDSKTL-MVVQVSPVEKNTSETLYSLK 320

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  150 bits (382), Expect = 1e-39
 Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 6/167 (3%)

Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
            KT TI ++T V + S E    +L+      S A T  N  SSRSH +F I L   +  +
Sbjct: 229 TKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 288

Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
                  + ++ DLAG+ER   +   GDRLRE + IN SL  L    + L + +      
Sbjct: 289 GA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS----T 343

Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++  ET+  L+
Sbjct: 344 KRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLR 389

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  149 bits (379), Expect = 2e-39
 Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +S    +++++T V++ + EE   +++ G        T +N +SSRSH + S+ +   + 
Sbjct: 160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL 219

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
            ++  I        DLAG+ER K++ ++G++L+EA++IN SL  L    + L       +
Sbjct: 220 QTQA-IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL-------S 271

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
              + IP+R+ KLT +   SL G + T+ M VN++ + +  +ET   L 
Sbjct: 272 SGNQHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLT 319

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  148 bits (375), Expect = 4e-39
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 6/169 (3%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           +  +   I ++T + + S  +   +L+      S A T  N RSSRSH VF + +   + 
Sbjct: 174 HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
            + E       ++ DLAG+ER   +  +G+RLRE + IN SL  L      L   +    
Sbjct: 234 HTGE-TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA--- 289

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
             K+ IPFR+SKLT + Q SL G S T+ M VN+   P +  ET+  L+
Sbjct: 290 -GKRYIPFRNSKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETLNSLR 336

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  147 bits (372), Expect = 2e-38
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           I  L+   + S  +  R       + +V  T LN RSSRSH V  +K+ + +  +     
Sbjct: 186 IPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQR 245

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
                + DLAG+E  +R    G RL+E+  IN+SL VL +  + L             +P
Sbjct: 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL-------NQGLPRVP 298

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           +RDSKLT++ Q SL G + ++ +I N+     +  +TV  L 
Sbjct: 299 YRDSKLTRLLQDSLGGSAHSI-LIANIAPERRFYLDTVSALN 339

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
              +  +D  S+     ++ + ++      Y+F   YG  +TQ +++   V  +L   L 
Sbjct: 42  PPCVRGMDSCSLEIANWRNHQETLK-----YQFDAFYGERSTQQDIYAGSVQPILRHLLE 96

Query: 135 GEDALLFSFGTTNSGKTFTIQ 155
           G++A + ++G T +GKT T+ 
Sbjct: 97  GQNASVLAYGPTGAGKTHTML 117

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  145 bits (369), Expect = 3e-38
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KV 204
            + +   I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +   + 
Sbjct: 180 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239

Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
               EEL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L      
Sbjct: 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL------ 293

Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
             ++   +P+R+SKLT+I Q SL G + T  +I  +  SPA    EET+  L+
Sbjct: 294 -VERTPHVPYRESKLTRILQDSLGGRTRTS-IIATI--SPASLNLEETLSTLE 342

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 34/51 (66%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           Y F  ++G  T Q ++++++V  +L+  + G +  +F++G T +GKTFT++
Sbjct: 57  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  145 bits (367), Expect = 4e-38
 Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKV 204
           ++ K   +  LT     S EE   +L  G  + +  PT++N  SSRSH VF I L     
Sbjct: 182 DTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241

Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
                + + ++   + DLAG+ER   +   G R  E   IN SL  L    N L ++   
Sbjct: 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR- 300

Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
              K + IP+R+SKLT++ + SL G   T+ MI  V  SP+    ++T   LK
Sbjct: 301 ---KNQHIPYRNSKLTRLLKDSLGGNCQTI-MIAAV--SPSSVFYDDTYNTLK 347

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYR-------------FSNIYGPHTTQAELF 121
             V+ V+D+  ++F P ++            +             F  ++   +TQ+E+F
Sbjct: 31  HKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVF 90

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           ++    +L  +LNG +  + ++G T +GKT T+ 
Sbjct: 91  EHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  143 bits (364), Expect = 6e-38
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           ++  T   V S +E    +  GKS+  VA T +N  SSRSH +F I + + +  +E+  +
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ-KL 223

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
                + DLAG+E+  +    G  L EA+ IN SL  L    + L       A+    +P
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVP 276

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
           +RDSK+T+I Q SL G   T  +++  + S     ET   L 
Sbjct: 277 YRDSKMTRILQDSLGGNCRTT-IVICCSPSSYNESETKSTLL 317

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 31/51 (60%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           Y F  ++   T+Q +++ +    +++  L G +  +F++G T+SGKT T++
Sbjct: 46  YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  145 bits (367), Expect = 7e-38
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
              +  T+ +  YV V   +E   +L   + + +VA T  N RSSRSH VF +++     
Sbjct: 205 PGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHS 264

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENN 262
                   +   + DLAG+ER       G    +RLRE + INSSL  L      L    
Sbjct: 265 SRGL-QCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL---- 319

Query: 263 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
              ++K+  +P+R+SKLT + Q SL G +  + M VN++       E++  L+
Sbjct: 320 ---SNKESHVPYRNSKLTYLLQNSLGGSAKML-MFVNISPLEENVSESLNSLR 368

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  143 bits (362), Expect = 2e-37
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 16/172 (9%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-------VKVD 205
            +  +  V+V   +E   +L  G +      T LNH SSRSH VF++ L        ++ 
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP 233

Query: 206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
             +   +++S F   DLAG+ER  +  ++G+RL+E+  INSSL  L    + L +     
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR-- 291

Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
             +   IP+RDSK+T+I + SL G + TV MI  V  SP+    +ET+  L 
Sbjct: 292 --RGSHIPYRDSKITRILKDSLGGNAKTV-MIACV--SPSSSDFDETLNTLN 338

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F  +      Q  ++Q  V  +LE +  G +A +F++G T SGKT+T+ 
Sbjct: 52  FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  142 bits (360), Expect = 4e-37
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELI 212
           +  L+   V +  E   ++  G ++  VA T++N  SSRSH +F +++       ++E+I
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI 232

Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
            +   ++ DLAG+ERQ +   +G+ L E   IN SL  L    + L        +    I
Sbjct: 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL-------VEGATHI 285

Query: 273 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
           P+RDSKLT++ Q SL G S T+ M  N+  SPA    +ET+  L+
Sbjct: 286 PYRDSKLTRLLQDSLGGNSKTL-MCANI--SPASTNYDETMSTLR 327

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 74  FENVLEVLDQK-SIMFKPMKDMKCSITDTCNLYRFS--NIYGPHTTQAELFQNIVHNMLE 130
             N++ + +    ++  P +  K +         F+   +Y   +    +FQ     +++
Sbjct: 24  ALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83

Query: 131 RYLNGEDALLFSFGTTNSGKTFTIQ 155
             L G ++ +F++G T +GKT+T+ 
Sbjct: 84  AVLEGFNSTIFAYGQTGAGKTWTMG 108

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  141 bits (358), Expect = 1e-36
 Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 15/168 (8%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGSEE 210
            IQ L  + VHS ++ Y++L  GK     A T +N +SSRSH VFSI +   +     E+
Sbjct: 196 IIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255

Query: 211 LIMMSSFDICDLAGAERQKRA-HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
           ++ +   ++ DLAG+E   +A +  G R+RE   IN SL  L R    L        D+ 
Sbjct: 256 MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL-------VDRA 308

Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
             +P+R+SKLT++ Q SL G + T  +I  +  SP     EET+  L+
Sbjct: 309 PHVPYRESKLTRLLQESLGGRTKTS-IIATI--SPGHKDIEETLSTLE 353

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F   +GP + Q +++  +V  ++E  LNG +  +F++G T +GKT T+ 
Sbjct: 69  FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  140 bits (354), Expect = 2e-36
 Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI 199
           L              Q  T + +HS  + + +L  G  +  V PT +N  SSRSH + +I
Sbjct: 167 LLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI 226

Query: 200 KLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLR 259
            +       +     S  +I DLAG+E  +R    G   +E   IN  L  + +    + 
Sbjct: 227 HV-------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM- 278

Query: 260 ENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
                 A    +IP+RDS LT + Q SL+  S     +  +  SP      ET+  L+
Sbjct: 279 ------AAGHTVIPYRDSVLTTVLQASLTAQSYLT-FLACI--SPHQCDLSETLSTLR 327

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 14/80 (17%), Positives = 37/80 (46%)

Query: 76  NVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNG 135
                  + S++  P      S+    N + F + +    +Q E++Q ++  ++++ L G
Sbjct: 34  RQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93

Query: 136 EDALLFSFGTTNSGKTFTIQ 155
                 ++G T +GK++++ 
Sbjct: 94  FQCTALAYGQTGTGKSYSMG 113

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  141 bits (358), Expect = 2e-36
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
           N+     + ++T   V        ++   K + + A T  N RSSRSH V  ++L+    
Sbjct: 219 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 278

Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
             +E I + S ++ DLAG+E  K    +  R+ E + IN SL  L      L        
Sbjct: 279 EKQE-ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILAL-------L 326

Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
            K+  IP+R+SKLT +   SL G S T+ M +NV+      +E+V+ L+
Sbjct: 327 QKQDHIPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVKSLR 374

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  139 bits (353), Expect = 4e-36
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGSEEL 211
           ++DL+     S +E   V+  G  + SV  T +N  SSRSH +F I +   +V    E  
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           I +   ++ DLAG+ERQ +    G+RL+EA  IN SL  L    + L +       K   
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 302

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
           IP+RDSKLT++ Q SL G + TV M+ NV   PA    EET+  L+
Sbjct: 303 IPYRDSKLTRLLQDSLGGNAKTV-MVANV--GPASYNVEETLTTLR 345

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F  +Y  +  Q EL+      +++  L G +  +F++G T +GKT+T++
Sbjct: 70  FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  138 bits (350), Expect = 7e-36
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----KLVKVDPGSE 209
           + DLT   V++ E A + +  G+       T++N RSSRSH +F +    +        E
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222

Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
             + +S  ++ DLAG+ER  +   +G RL+E   IN SL +L +    L +         
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-----VG 277

Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
             I +RDSKLT+I Q SL G + T  +I  +  +P   +ET+  L+
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTR-IICTI--TPVSFDETLTALQ 320

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 29/51 (56%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           + F  ++  + T   +++ I   +++  + G +  +F++G T SGKT+T+ 
Sbjct: 46  FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  138 bits (350), Expect = 8e-36
 Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
           +  L+ + V S ++   ++  G    +VA T +N  SSRSH VF I L   +        
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
              +    + DLAG+ER  +   +GDRL+E   IN SL  L    + L + +  K  K K
Sbjct: 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKN-KNK 298

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA---YAEETVQVLK 315
            +P+RDS LT + + SL G S T  M+  V  SPA   Y +ET+  L+
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTA-MVATV--SPAADNY-DETLSTLR 342

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  136 bits (345), Expect = 4e-35
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           ++  T   V S E+ + V+  GKS+  +A T +N  SSRSH VF I + + +  +++  +
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK-KL 230

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
                + DLAG+E+  +    G  L EA+ IN SL  L    + L +        K  IP
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG------NKTHIP 284

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
           +RDSKLT+I Q SL G + T  +++    SPA     ET   L 
Sbjct: 285 YRDSKLTRILQESLGGNARTT-IVICC--SPASFNESETKSTLD 325

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 31/51 (60%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           Y F  ++ P+ +Q +++     +++   L G +  +F++G T+SGKT T++
Sbjct: 53  YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  135 bits (342), Expect = 1e-34
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGS-EE 210
           ++DL+ + V S  +   ++  G    +VA T +N  SSRSH VF+I     + D  +   
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL-----RENNGLK 265
              +S   + DLAG+ER       G RL+E   IN SL  L +  + L       N   K
Sbjct: 238 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297

Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
             K   IP+RDS LT + + +L G S T  M+  +  SPA    +ET+  L+
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTA-MVAAL--SPADINYDETLSTLR 346

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  134 bits (340), Expect = 2e-34
 Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           ++ L  + V S +E Y V+R G +  +VA T +N  SSRSH +F I + + +  +     
Sbjct: 169 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS-AK 227

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
                + DLAG+E+  +   SG  L EA+ IN SL  L    N L +       K   +P
Sbjct: 228 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSHVP 281

Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
           +RDSKLT+I Q SL G S T  +I+N   SP+     ET+  L+
Sbjct: 282 YRDSKLTRILQESLGGNSRTT-LIINC--SPSSYNDAETLSTLR 322

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
           + ++      +      +            + F  ++     Q+++F   +   ++  LN
Sbjct: 27  QPIVTFQGPDTCTVDSKEAQGS--------FTFDRVFDMSCKQSDIFDFSIKPTVDDILN 78

Query: 135 GEDALLFSFGTTNSGKTFTIQ 155
           G +  +F++G T +GK++T+ 
Sbjct: 79  GYNGTVFAYGQTGAGKSYTMM 99

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  133 bits (337), Expect = 4e-34
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 17/166 (10%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
            ++DL  + V + EE    +  G     +     N  SSRSH + +I L        +  
Sbjct: 172 VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD----INKNT 227

Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKL 271
            +      DLAG+ER     +   + + +   IN SL  L  C   +          K  
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-------DSDKNH 280

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
           IPFRDS+LT++ +    G S ++ MI N+  SP  +  E+T+  L+
Sbjct: 281 IPFRDSELTKVLRDIFVGKSKSI-MIANI--SPTISCCEQTLNTLR 323

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCN--LYRFSNIYGPHTTQAELFQNIVHNMLERY 132
            +++ V +  ++     +  K  +T       +    ++        +++N +  ++   
Sbjct: 21  SDIITVKNNCTLYIDEPRY-KVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79

Query: 133 L-NGEDALLFSFGTTNSGKTFTIQ 155
             NG     F++G T SGKT+T+ 
Sbjct: 80  YENGCVCSCFAYGQTGSGKTYTML 103

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  135 bits (342), Expect = 5e-34
 Identities = 61/180 (33%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
           ++DLT V V   EE  R +R G    +VA T++N  SSRSH VF+I L          + 
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT 288

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL------------ 258
               S   + DLAG+ER K    +G RLRE   IN SL  L R    L            
Sbjct: 289 TERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSS 348

Query: 259 ---RENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
                          ++P+RDS LT + + SL G S T  MI  +  SP   +ET+  L+
Sbjct: 349 PVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDETLSTLR 405

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  124 bits (313), Expect = 1e-30
 Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 20/166 (12%)

Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
           +  L    V+S ++  +++  G +  +   T  N  SSRSH  F I L           M
Sbjct: 225 VVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG------RM 278

Query: 214 MSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
              F + DLAG ER     ++  + R E   IN SL  L  C   L          K   
Sbjct: 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAHT 331

Query: 273 PFRDSKLTQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
           PFR+SKLTQ+ + S +   S T  MI  +  SP  +  E T+  L+
Sbjct: 332 PFRESKLTQVLRDSFIGENSRTC-MIATI--SPGISSCEYTLNTLR 374

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNL-YRFSNIYGPHTTQAELFQNIVHNMLERYL 133
            +V+ +  +  ++    K          N  + F   +    +   +++     +++   
Sbjct: 72  IDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 131

Query: 134 NGEDALLFSFGTTNSGKTFTIQ 155
            G  A  F++G T SGKT T+ 
Sbjct: 132 EGGKATCFAYGQTGSGKTHTMG 153

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  121 bits (307), Expect = 9e-30
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
            +  L    V   ++  +++  G +  +   T  N  SSRSH  F I L           
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG------R 297

Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKL 271
           +   F + DLAG ER     ++  + R E   IN SL  L  C   L          K  
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAH 350

Query: 272 IPFRDSKLTQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
            PFR+SKLTQ+ + S +   S T  MI  +  SP  +  E T+  L+
Sbjct: 351 TPFRESKLTQVLRDSFIGENSRTC-MIAMI--SPGISSCEYTLNTLR 394

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCN--LYRFSNIYGPHTTQAELFQNIVHNMLERY 132
            +V+ V  +  ++    K  K  +T       + F   +    +   +++     +++  
Sbjct: 92  IDVISVPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 150

Query: 133 LNGEDALLFSFGTTNSGKTFTIQ 155
             G  A  F++G T SGKT T+ 
Sbjct: 151 FEGGKATCFAYGQTGSGKTHTMG 173

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 98.4 bits (245), Expect = 5e-21
 Identities = 74/409 (18%), Positives = 149/409 (36%), Gaps = 42/409 (10%)

Query: 431  KKLREQHEEDLERQRKF------YKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL 484
             K ++Q E     Q                L   +         E+E   +     + K 
Sbjct: 812  AKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKE 871

Query: 485  KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
            + Q  + EL ELE K+  L EE   +  KL+  T    +       L  K  +L   + E
Sbjct: 872  RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 545  MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
            ME   + E   E  + L++   + +++  +   ++E+  +  +KL  E+     +  ++E
Sbjct: 932  MEARIEEEE--ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989

Query: 605  YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
             ++   +      T   + L+E++  +     EE    E        L ++ ++ +    
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE----EEKAKNLTKLKNKHESMISELE 1045

Query: 665  AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724
                +     Q L+K  + L     D  + I +L+A+I +       +K     KE+++ 
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE-------LKAQLAKKEEELQ 1098

Query: 725  ELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELA 784
                + E+ T Q        +   + I +++ D  S K  + K  K   D    + +EL 
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD----LSEELE 1154

Query: 785  EMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLK 833
             +K                    +LED +++   + E R +  +D   K
Sbjct: 1155 ALK-------------------TELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 97.6 bits (243), Expect = 8e-21
 Identities = 63/328 (19%), Positives = 138/328 (42%), Gaps = 5/328 (1%)

Query: 383  RLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLE 442
            R  E   A+ E   + +   Q  E   +  E       E++   +  ++   E + E  E
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 443  RQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
             + +    + E    L + +   ++ E+ +    A + + + ++ +L+++L E EA  + 
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 503  LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
            L  E     GK+K++  +   +  +N +L  +   L  RV ++      E   E+ K L 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE--EKAKNLT 1031

Query: 563  SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
             L ++ +    E    +++     ++L + +R L   S++L  ++ +    IA       
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 623  ELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAESNQSAHDEQALQK 679
            + +E+L     + ++E+      + +   L   IS L+ DLES +A  N++   ++ L +
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 680  EIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
            E++ L + L D   T    +       K
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 90.3 bits (224), Expect = 1e-18
 Identities = 61/386 (15%), Positives = 131/386 (33%), Gaps = 54/386 (13%)

Query: 484  LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
            LK+   ++E+   + + +   E  +    +LKEL +++  L  +   L+ K+   +    
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 544  EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
            E E         E    L +   E +E   E    IE+     ++L  E++         
Sbjct: 910  EAE---------EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--------- 951

Query: 604  EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
                               ++Q+++  +E + +EE    ++L  EK     ++K   +  
Sbjct: 952  -------------------KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 664  RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
                +Q+      L KE K L   + D    + + + K     K     +      E  +
Sbjct: 993  LIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 724  AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
             + +   +EL +   KLE +       I  ++          +  L   E+ L+A    L
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ----IAELKAQLAKKEEELQAALARL 1104

Query: 784  AEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINN 843
             +           +      +  ++LE  ++ L+ +LE         + +     E +  
Sbjct: 1105 ED---------ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 844  LKAQMEKSQQQQQQQRSPLKGLENQM 869
            LK ++E +      Q+          
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 84.1 bits (208), Expect = 1e-16
 Identities = 48/295 (16%), Positives = 111/295 (37%), Gaps = 32/295 (10%)

Query: 397  KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
            K+E E  + E    ++E      EE+++      KK  +Q   DLE Q +  +   + L 
Sbjct: 922  KQELEEILHEMEARIEE------EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL- 974

Query: 457  TLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
               + ++   D + + + +          I  ++ + ++L  + K L E   D++  L E
Sbjct: 975  ---QLEKVTADGKIKKMEDD---------ILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 517  LTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQT 576
               + ++L     + E  +++L  R+++ E+  Q          L+ +  + + E  +  
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE---------LEKIKRKLEGESSDLH 1073

Query: 577  TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ 636
             +I +L++++ +L  +              LE              EL+  +  ++   +
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

Query: 637  EESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK 691
             E     +   +K      L  +LE+ + E   +       Q+   +      DK
Sbjct: 1134 SEKAARNKAEKQK----RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 33/208 (15%), Positives = 85/208 (40%), Gaps = 22/208 (10%)

Query: 701  KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME---ND 757
            ++   ++     KE ++  E ++ EL+ K  +L ++   L+   Q+        E     
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 758  ERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLK 817
              + K   E++L   E R++  ++   +++                  +K+++ Q+  L+
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAE----------------KKKMQQQMLDLE 961

Query: 818  AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
             +LE+     + LQL+ +     I  ++  +   + Q  +     K LE +++ +  + +
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021

Query: 878  PSGEDTDDPDFLPRSRCKSTSKKRQLKK 905
               E+ +    L + + K  S   +L+ 
Sbjct: 1022 ---EEEEKAKNLTKLKNKHESMISELEV 1046

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 90.7 bits (224), Expect = 1e-18
 Identities = 90/637 (14%), Positives = 196/637 (30%), Gaps = 166/637 (26%)

Query: 321 RDLLTVAKP--------RHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQ 372
           +D+L+V +         + +   P+     SI++       E D +   + +   T    
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPK-----SILSKE-----EIDHIIMSKDAVSGTLRL- 67

Query: 373 GSHDDPYETIRLLEARLAE--FEGFDKKEFEY---QIREEYREVQEDFRKMFEEQQTDWE 427
                 + T+   +  + +   E   +  +++    I+ E R+      +M+ EQ+    
Sbjct: 68  ------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLY 120

Query: 428 NNVKKLREQH----EEDLERQRKFYKTQIETLMTLV------K----NQQAEDDSEDETL 473
           N+ +   + +    +  L+ ++   + +    + +       K                +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 474 N--------------ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
           +              E+ +E   KL  Q +    +       ++      +  +L+ L +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 520 ENR--------DLVTKNKELEG-----KVAQLSRRVEEMER-GAQTENKPEEVKYLKSL- 564
                        V   K         K+   +R  +  +   A T        +  +L 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 565 LDEAKEEF-KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
            DE K    K      + L  EV   +   R L++ +  +   L   D    V  D    
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 624 LQEK----LDYMENK--------FQEESLVYERLMS---------EKENLISQL--KADL 660
           + E     L+  E +        F   + +   L+S         +   ++++L   + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 661 ESNRAESNQSAHDEQ-ALQKEIKNLGSLLVDKDKTIGDLKAKIHK--YEKYYAVMKEDRK 717
           E    ES  S       L+ +++N  +L               H+   + Y         
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYAL---------------HRSIVDHY-------NI 455

Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNT-----IKNMENDERSTKHNQEKLLKIY 772
            K  D  +L                D   Y  +     +KN+E+ ER           ++
Sbjct: 456 PKTFDSDDL-----------IPPYLD--QYFYSHIGHHLKNIEHPERM-----TLFRMVF 497

Query: 773 ED----RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQ-------VNSLKAELE 821
            D      K   D  A      +  +L         Y+  + D        VN++   L 
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 822 Q-RHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857
           +   N++      LL+   ++   +A  E++ +Q Q+
Sbjct: 554 KIEENLICSKYTDLLRIA-LMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 9e-15
 Identities = 92/615 (14%), Positives = 173/615 (28%), Gaps = 149/615 (24%)

Query: 254 CFNVLRENNGL--KADKKKLI--PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY--- 306
           C +V      +  K +   +I      S   ++F   LS     V+  V       Y   
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 307 ----AEETVQ---VLKISSVARDLL----TVAKPRHLP-PPPRKKTRF------------ 342
                 E  Q   + ++    RD L     V    ++    P  K R             
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 343 ---------SIMAARNLDWRESDIVFQERASGEMTDYF---QGSHDDPYETIRLLEARLA 390
                    + +A             Q +   ++   F     + + P   + +L+  L 
Sbjct: 155 IDGVLGSGKTWVALDVC----LSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLY 207

Query: 391 EFE--GFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLRE-QHEEDLERQRKF 447
           + +     + +    I+     +Q + R++ + +   +EN +  L   Q+ +       F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWN---AF 262

Query: 448 YKTQIETLMTLVKNQQAEDD-SEDETLNESAIEAQHKLKIQNLKQELSELEAKY-----K 501
                + L+T  + +Q  D  S   T + S       L       E+  L  KY     +
Sbjct: 263 -NLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQ 316

Query: 502 SLSEEHEDMS----GKLKELTRENRDLVT--KNKELEGKVAQLSRRVEEMERGAQTENK- 554
            L  E    +      + E  R+        K+   +     +   +  +E     E + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRK 373

Query: 555 --------PEEVK----YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR-------L 595
                   P         L  +  +  +             S VEK  +E         L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 596 LTVRSAELEYELEQR---DYLIAVKTDGAEELQEKLD-YMENKFQEESLVY---ERLMSE 648
                 E EY L +     Y I    D  + +   LD Y    +    + +        E
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSH--IGHHLKNIEHPE 488

Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK---TIGDLKAKIHKY 705
           +  L   +  D                 L+++I++  +          T+  LK     Y
Sbjct: 489 RMTLFRMVFLDFR--------------FLEQKIRHDSTAWNASGSILNTLQQLK----FY 530

Query: 706 EKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ 765
           + Y        +     I +   K EE       + +     L      E++        
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENL-----ICSKYTDLLRIALMAEDEA------- 578

Query: 766 EKLLKIYEDRLKAVQ 780
                I+E+  K VQ
Sbjct: 579 -----IFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.8 bits (188), Expect = 2e-14
 Identities = 87/546 (15%), Positives = 172/546 (31%), Gaps = 154/546 (28%)

Query: 487 QNLKQELSELEAKYKSLSEEHE-----DMSGK-LKELTRENRDLVTKNKELEGKVAQLSR 540
            ++  E  E + +YK +    E     +   K ++++ +     +   +E++  +     
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEEID-HIIMSKD 59

Query: 541 RVEEMERGAQT-ENKPEEV--KYLKSLLDE--------AKEEFKEQTTEIEQLRSEVEKL 589
            V    R   T  +K EE+  K+++ +L           K E ++ +        + ++L
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 590 ------------SEERRLLTVRSAELEYELEQRDYLI------------AVKTDGAEELQ 625
                       S  +  L +R A L  EL     ++            A+    + ++Q
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQA-L-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 626 EKLDY------MENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQK 679
            K+D+      ++N    E+++ E L    + L+ Q+  +  S    S+       ++Q 
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVL-EML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 680 EIKNL-------GSLLV-D--KDKTIG---DLKAKI-------------HKYEKYYAVMK 713
           E++ L         LLV    ++       +L  KI                   +  + 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 714 EDRKTKEKDIAE------LKTKCEELTQQVTK--------LEADCQSYLNTIKNMENDER 759
               T   D  +      L  + ++L ++V          +    +  L T  N      
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------ 346

Query: 760 STKH-NQEKLLKIYEDRLKAVQ-DELAEM--KCAQLKPSLEASAATPSQY-----RKQLE 810
             KH N +KL  I E  L  ++  E  +M  + +   PS        S       +  + 
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 811 DQVNSL-KAELEQRHN-----VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG 864
             VN L K  L ++        +  + L+L  K E    L   +           +  K 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-------VDHYNIPKT 458

Query: 865 LENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNSTAGLAENVNLIT 924
            ++       D  P   D      +                   HL       E + L  
Sbjct: 459 FDSD------DLIPPYLDQYFYSHIGH-----------------HL-KNIEHPERMTLF- 493

Query: 925 PRRIFF 930
            R +F 
Sbjct: 494 -RMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 1e-10
 Identities = 96/609 (15%), Positives = 182/609 (29%), Gaps = 166/609 (27%)

Query: 18  NILFNSLGPYLDKSDVLFRPTYASNVSMLSKE---DRVQAFDVKKQILNSFD--QSYAGS 72
           +IL      ++D  D         ++  LSKE     + + D     L  F    S    
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 73  TFENVLEVLDQKSIMF----------KPMKDMKCSITDTCNLYRFSNIYGP-HTTQAELF 121
             +  +E + + +  F          +P    +  I     LY  + ++   + ++ + +
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTF----TIQDLT----------YVNVHSCEE 167
             +    L      ++ L+   G   SGKT+                    ++N+ +C  
Sbjct: 138 LKL-RQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 168 AYRVLRFGKSHLSVAPTELNHRSSRS----HCVFSIK-----LVKVDPGSEELIMM---- 214
              VL   +  L         RS  S      + SI+     L+K  P    L+++    
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 215 -----SSFDI-C------------DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFN 256
                ++F++ C            D   A      H S D      T +    +L +  +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 257 VLRENNGLKADKKKLIPF---------RD-------------SKLTQIFQRSLSGLSST- 293
                  L  +     P          RD              KLT I + SL+ L    
Sbjct: 313 C--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 294 -----VKMIV---NVNASPAYAEETVQVL---KISSVARDLLTVAKPRHLPPPPRKKTRF 342
                 ++ V   + +         + ++    I S    ++       L     K++  
Sbjct: 371 YRKMFDRLSVFPPSAHIP----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 343 SIMAARNLDWRESDIVFQERASGE--------MTDYFQGSHDDPYETIRLLEAR--LAEF 392
           SI            I  + +   E        + D++        + +            
Sbjct: 427 SIP----------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 393 EGFDKKEFE-YQIREEYREVQEDFRKMFEEQQTDWENNVKKLR--------EQHEEDLER 443
            G   K  E  +    +R V  DFR  F EQ         K+R             +  +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR--FLEQ---------KIRHDSTAWNASGSILNTLQ 525

Query: 444 QRKFYKTQIETLMTLVKN----QQAEDDSED--ETLNESAIEAQHKLKIQNLKQELSELE 497
           Q KFYK  I        N    ++  +   D    + E+ I +++   ++        L 
Sbjct: 526 QLKFYKPYI------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------IALM 573

Query: 498 AKYKSLSEE 506
           A+ +++ EE
Sbjct: 574 AEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 1e-06
 Identities = 58/430 (13%), Positives = 121/430 (28%), Gaps = 150/430 (34%)

Query: 507 HEDMSGKLKELTRENRDLVTKNKELEGKVAQLS-RRVEEMERGAQTENKPEEVKYLKSLL 565
           H  M  +  E   + +D+++     +  V     + V++M +   +              
Sbjct: 4   HHHMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILS-------------- 47

Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQ 625
              KEE       I   +  V       RL       L  + E+      V+    E L+
Sbjct: 48  ---KEEIDH----IIMSKDAVSGT---LRLFWT----LLSKQEE-----MVQKFVEEVLR 88

Query: 626 EKLDYMENKFQEE----SLVYERLMSEKENLIS--QLKADLESNRAESNQSAHDEQALQK 679
               ++ +  + E    S++    + +++ L +  Q+ A    +R +          L++
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ------PYLKLRQ 142

Query: 680 EIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV--MKEDRKTKEKDIAELKTKCEELTQQV 737
            +  L                   +  K   +  +    KT              +   V
Sbjct: 143 ALLEL-------------------RPAKNVLIDGVLGSGKT-----------W--VALDV 170

Query: 738 TKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY----------EDRLKAVQDELAEMK 787
                 C SY      M+              KI+          E  L+ +Q  L    
Sbjct: 171 ------CLSY-KVQCKMDF-------------KIFWLNLKNCNSPETVLEMLQK-L---- 205

Query: 788 CAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRH--------------NVVR--DLQ 831
             Q+ P+  + +   S  + ++      L+  L+ +                     +L 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 832 LKLL---QKGEMINNLKAQMEK--SQQQQQQQRSPLKGLENQMAK-INIDRSPSGEDTDD 885
            K+L   +  ++ + L A      S        +P +     + K ++            
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDC----------R 314

Query: 886 PDFLPRSRCK 895
           P  LPR    
Sbjct: 315 PQDLPREVLT 324

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 79.8 bits (197), Expect = 3e-15
 Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 21/268 (7%)

Query: 402  YQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN 461
            Y +R+ Y+ +    R      Q         L     + + R+ K    Q      L + 
Sbjct: 829  YVVRKRYQCM----RDATIALQALLR---GYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881

Query: 462  QQAEDDSEDETLNESAIEAQHKLKIQNLKQE---LSELEAKYKSLSEEHEDMSGKLKELT 518
                       L         K +++ LK E   +   +  +  L  +   +  K+ E  
Sbjct: 882  HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 519  RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
            +E + L+ K   LE   +  + ++       +   +  E K   + +   +EE  +   E
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE--EAKNATNRVLSLQEEIAKLRKE 999

Query: 579  IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE 638
            + Q ++E + + E        + +L  EL++++ L+  +    EEL  ++        + 
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE---KEELNRRIH------DQA 1050

Query: 639  SLVYERLMSEKENLISQLKADLESNRAE 666
              + E +  +      QL+ DL   R  
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.1 bits (177), Expect = 6e-13
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 12/237 (5%)

Query: 541  RVEEMERGAQTENKPEEVKYLKS--LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTV 598
             ++ + RG    NK + +       ++ +    +  +      L++ V      RR++  
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903

Query: 599  R-SAELEYELEQRDYLIAVKTDG---AEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654
            R   +L+ E    +    +         +LQ K+D    +++        L         
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 655  QLKADLESNRA---ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
            +L++D+E  R    E+  + +   +LQ+EI  L   L         ++    KY+     
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HE 1020

Query: 712  MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
             ++     ++    LKT+ EEL +++     +    +      E  +     N E+L
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 66.3 bits (162), Expect = 4e-11
 Identities = 31/197 (15%), Positives = 82/197 (41%), Gaps = 25/197 (12%)

Query: 401  EYQIREEYREVQEDFRKMFEEQQ--TDWENNVKKLREQHEEDLERQRKFYKTQIETLMTL 458
                + E ++++ + R +   ++     EN + +L ++  ++  ++ K    ++  L   
Sbjct: 899  RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL-QRKIDEQNKEYKSLLEKMNNLEIT 957

Query: 459  VKNQQAEDDSEDETLNESAIEAQHKLK--------IQNLKQELSELEAKYKSLSEEHEDM 510
               +  +  S+ E L  S  EA++           I  L++EL + + + K++ E  +  
Sbjct: 958  YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017

Query: 511  SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKE 570
              + ++L  E   L  +N  L+ +  +L+RR+ +  +              +++  +  E
Sbjct: 1018 KHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEIT-----------ETMEKKLVE 1063

Query: 571  EFKEQTTEIEQLRSEVE 587
            E K+   ++   R   +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 33/286 (11%), Positives = 91/286 (31%), Gaps = 33/286 (11%)

Query: 536  AQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL 595
              + R+  +  R A    +      L+  L   K +   +  +   ++  V         
Sbjct: 828  MYVVRKRYQCMRDATIALQ----ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883

Query: 596  LTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQ 655
                 A +  +   R  +       A+   +KL       +    ++  L ++   L  +
Sbjct: 884  HRTLKAIVYLQCCYRRMM-------AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936

Query: 656  LKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
            +    +  ++   +  + E     E + L S +     +  + K   ++           
Sbjct: 937  IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR----------- 985

Query: 716  RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDR 775
              + +++IA+L+ +  +   +   +E     Y +  + + ++ +      +   +    R
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045

Query: 776  LKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
            +     E+ E    +L            +  KQLE  +N  +   +
Sbjct: 1046 IHDQAKEITETMEKKLV-----------EETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 34/240 (14%), Positives = 92/240 (38%), Gaps = 9/240 (3%)

Query: 379  YETIRLLEARL-AEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQH 437
            Y+ +R     L A   G+  +     +  E++ +           +  +   +K +    
Sbjct: 835  YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 438  EEDLERQ-RKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
                    ++  K       ++ + ++     E++ +       +   + ++L ++++ L
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954

Query: 497  EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM--ERGAQTENK 554
            E  Y + +E+      +L+    E ++   +   L+ ++A+L + + +   E+    E  
Sbjct: 955  EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014

Query: 555  PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE-----RRLLTVRSAELEYELEQ 609
             +     + L+ E KE+     TE E+L   +   ++E      + L   + +LE +L  
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 40/283 (14%), Positives = 97/283 (34%), Gaps = 37/283 (13%)

Query: 593  RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
            +R+  VR       +      +     G     +    +          + R    + + 
Sbjct: 826  QRMYVVRKRYQC--MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883

Query: 653  ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
               LKA +        Q  +     ++E+K L      + +++   K      E      
Sbjct: 884  HRTLKAIVYL------QCCYRRMMAKRELKKL----KIEARSVERYKKLHIGLEN----- 928

Query: 713  KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
                   ++ I E   + + L +++  LE    +    +++     R      E+  K  
Sbjct: 929  --KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR----MSEEEAKNA 982

Query: 773  EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
             +R+ ++Q+E+A+     L+  L  +       +K +E+  +  K E EQ  + +++   
Sbjct: 983  TNRVLSLQEEIAK-----LRKELHQTQTE----KKTIEEWADKYKHETEQLVSELKEQNT 1033

Query: 833  KLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID 875
             L  + E +N       K   +  +++     L  +  ++ +D
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKK-----LVEETKQLELD 1071

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 241 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300
           A+ IN SL  L    + L E        K  +P+RDSK+T+I Q SL G   T  +++  
Sbjct: 1   AKNINKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLDGNCRTT-IVICC 53

Query: 301 NASPAYAEETVQVLKISSVAR 321
           + S     ET   L     A+
Sbjct: 54  SPSVFNEAETKSTLMFGQRAK 74

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 245 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 304
           N SL  L    + L E        K  +P+RDSK+T+I Q SL G   T  +++  + S 
Sbjct: 1   NKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLGGNCRTT-IVICCSPSV 53

Query: 305 AYAEETVQVLKISSVAR 321
               ET   L     A+
Sbjct: 54  FNEAETKSTLMFGQRAK 70

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 59.0 bits (141), Expect = 6e-09
 Identities = 44/449 (9%), Positives = 122/449 (27%), Gaps = 11/449 (2%)

Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
           +   +  E  +        ++ D            +     +++F   Q E      + +
Sbjct: 68  ENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTE 127

Query: 463 QAEDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
            A  D+         + A     ++  +  +  + + E + K      +  +  L E  R
Sbjct: 128 IAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYER 187

Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
               L T+  ELE                AQ      +       + EA+ +    T  +
Sbjct: 188 RKGILDTRLSELEKN-----GGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESL 242

Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES 639
              R+ + +  ++                ++    +   D      +       K    +
Sbjct: 243 NTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSA 302

Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
           ++  R         S L          +     D +  +K      +      + + D +
Sbjct: 303 VIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDAR 362

Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYLNTIKNMEN 756
            KI   E      + +   +  +          L ++   +          +   K  ++
Sbjct: 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQD 422

Query: 757 DERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSL 816
           + ++TK       +  +   +    +  ++       +         +  K  E     +
Sbjct: 423 ELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADI 482

Query: 817 KAELEQRHNVVRDLQLKLLQKGEMINNLK 845
             ++  +        L+ ++  ++ +NL 
Sbjct: 483 NKKINAKDRAAIAAALESVKLSDISSNLN 511

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 45.9 bits (107), Expect = 5e-05
 Identities = 48/412 (11%), Positives = 121/412 (29%), Gaps = 7/412 (1%)

Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
           +  + E        +  + + +N + E  +  +   +  E+ E+    L+    +  D+ 
Sbjct: 49  EKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADIT 108

Query: 526 -TKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR 583
             + + L+ ++ +   R E       +   +   +      L  +  E +    + E+ +
Sbjct: 109 RQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQ 168

Query: 584 SEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYE 643
            +        +      AE E      D  ++            LD  + +   +    +
Sbjct: 169 KD---AQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRND 225

Query: 644 RLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH 703
           R +SE  N +S +   L + R    ++       +        +  +K          I 
Sbjct: 226 RAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIV 285

Query: 704 KYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKH 763
                         T                  +             +      ++   +
Sbjct: 286 VSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYN 345

Query: 764 NQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQR 823
            +         RL   ++++   + A        SA T  Q  K   D +N+L  E E  
Sbjct: 346 AEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQ--KHANDALNALLKEKENI 403

Query: 824 HNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID 875
            N +  +  K+ ++    + LKA  +      +  +S  +    +  ++  +
Sbjct: 404 RNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLARE 455

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 55.7 bits (133), Expect = 5e-08
 Identities = 44/412 (10%), Positives = 120/412 (29%), Gaps = 47/412 (11%)

Query: 323 LLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDI------VFQERASGEMTDYFQGSHD 376
              V   + L P  +     S      +  + +D+      V  +++            +
Sbjct: 326 HDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVN 385

Query: 377 DPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQ 436
                +R                   +        Q    K     +      V +L ++
Sbjct: 386 RSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKE 445

Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
             E L+R R+     +  L         E+++ D  L     E   +     L + L   
Sbjct: 446 LPELLQRNREILDESLRLL--------DEEEATDNDLRAKFKERWQRTPSNELYKPLRAE 497

Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE 556
              ++            L +  + +  +    +     +  L +   E+           
Sbjct: 498 GTNFR----------TVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELN---------- 537

Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV 616
               + S       +  E    ++ L S ++++ +ER  L      + +++  +      
Sbjct: 538 --AAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALA 595

Query: 617 KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLK---ADLESNRAESNQSAHD 673
           +     E    +  ++  +   +   +  + ++E L+  ++    +    +  +N++   
Sbjct: 596 QDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655

Query: 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE 725
           E+ L+         L        +L A + +  K+Y  + E     +   ++
Sbjct: 656 EEVLKN--------LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD 699

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 46.5 bits (109), Expect = 4e-05
 Identities = 46/395 (11%), Positives = 132/395 (33%), Gaps = 19/395 (4%)

Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
             L + ++    +Y ++ +  + ++  L    ++N D +  ++  + K      +   ++
Sbjct: 287 AELIKTVASRYDEYVNVKDFSDKINRALAAAKKDN-DFIYHDRVPDLKDLDPIGKATLVK 345

Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
                    ++   L   +       +      ++    V +   + R  T  +  +   
Sbjct: 346 STPVNVPISQKFTDLFEKM-VPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLAS 404

Query: 607 LEQRDYLIAVKTDGA-EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRA 665
           L     +  V  D   + +  K   +  +   +++  ++L+ E   L+ + +  L+ +  
Sbjct: 405 LNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTV--DQLIKELPELLQRNREILDESLR 462

Query: 666 ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY-------YAVMKEDRKT 718
             ++    +  L+ + K         ++    L+A+   +             +KE  ++
Sbjct: 463 LLDEEEATDNDLRAKFKERWQRT-PSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQS 521

Query: 719 KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA 778
               I  L     EL   +           + + N+     S     +K  +  E+ LK+
Sbjct: 522 HRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581

Query: 779 VQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKG 838
           V  ++       L    +      +    +L+     L  ++++        Q  LL+  
Sbjct: 582 VNFDMTSKFLTALA--QDGVINEEALSVTELDRVYGGLTTKVQES----LKKQEGLLKNI 635

Query: 839 EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
           ++ +   ++M++S  +   +   LK L        
Sbjct: 636 QVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFV 670

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 48/289 (16%), Positives = 112/289 (38%), Gaps = 12/289 (4%)

Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
           K K+Q LK +      +      + +    + K+L  E   L  K K  E ++ + S  +
Sbjct: 5   KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64

Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE 602
           ++ +         E+++  +    +A+ +       I+    E+++  E       +  E
Sbjct: 65  KDAQ---------EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEE 115

Query: 603 LEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKAD 659
            E   ++ +  + V    A++ +EK++  E + +E   + E    + E +   +  +++D
Sbjct: 116 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 175

Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
           LE     +  S      L++EIK + + L   +        K  KYE+   V+ +  K  
Sbjct: 176 LERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
           E      +    +L + +  LE +  +     K +  +     ++   +
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 37/278 (13%), Positives = 98/278 (35%), Gaps = 5/278 (1%)

Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
           K++ L  +  + + +  E E        R +++E    +  K  ++K  +  LD+  E  
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK--KLKATEDELDKYSEAL 64

Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
           K+   ++E    +      +   L  R    E EL++    +A      EE ++  D  E
Sbjct: 65  KDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESE 124

Query: 633 NKFQE---ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLV 689
              +     +   E  M  +E  + + K   E    +  + A     ++ +++       
Sbjct: 125 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 184

Query: 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN 749
             +    +L+ +I         ++   +   +   + + + + L+ ++ + E   +    
Sbjct: 185 LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 244

Query: 750 TIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
           ++  +E      +         Y+   + +   L +M 
Sbjct: 245 SVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 38/284 (13%), Positives = 96/284 (33%), Gaps = 4/284 (1%)

Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEEL 624
           +D  K++ +    + E      ++   +++    RS +LE EL      +    D  ++ 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 625 QEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAESNQSAHDEQALQKEI 681
            E L   + K +          ++  +L   I   + +L+  +     +    +  +K  
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
                 +   +      + K+   E      K   +  ++   E+  K   +   + + E
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK-PSLEASAA 800
              +        +E + ++  +N + L    E   +       E+K    K    E  A 
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 801 TPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNL 844
              +   +LE  ++ L+ EL  +    + +  +L      + ++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 25/201 (12%), Positives = 66/201 (32%), Gaps = 12/201 (5%)

Query: 402 YQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIE----TLMT 457
           ++  ++  +  +   +   E +  + +   KLR    E           +I+     L  
Sbjct: 800 HKEYKKTEKPPK--GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK 857

Query: 458 LVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSG---KL 514
             +        E +   + A+  Q   +I    +  +  ++ Y   +E  + ++    KL
Sbjct: 858 AEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKL 917

Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
           K L   + +  +   +    +  +  ++ E+      E    +  +        K   + 
Sbjct: 918 KNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAET 977

Query: 575 QTTEIEQLRSEVEKLSEERRL 595
                  L +E+E+L +   L
Sbjct: 978 ---YKNTLLAELERLQKIEDL 995

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 15/211 (7%)

Query: 405  REEYREVQEDFR-KMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQ 463
             +EY++ ++  + +   E +  + +   KLR    E           +I++  + ++  +
Sbjct: 808  HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867

Query: 464  AEDDS----EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
             E       E +   + A+  Q   +I   K E           S E  D    ++   +
Sbjct: 868  QEHAEALRIELKRQKKIAVLLQKYNRIL-KKLENWATTKSVYLGSNETGDSITAVQAKLK 926

Query: 520  ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQT-TE 578
                   + + LEG+       +            PE  +   +   +     K    T 
Sbjct: 927  NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 986

Query: 579  IEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
               L +E+E+L +          +L +    
Sbjct: 987  KNTLLAELERLQKIE--------DLHHHHHH 1009

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 51.8 bits (123), Expect = 9e-07
 Identities = 43/417 (10%), Positives = 134/417 (32%), Gaps = 41/417 (9%)

Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
            +      +     E+ +  +E  +     + E       KF +            +   
Sbjct: 334 GKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393

Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
              + ET   S I+A          ++    E+   +  +  E ++   +EL   +    
Sbjct: 394 QQKDYETATLSEIKAL--------LKKHEAFESDLAAHQDRVEQIAAIAQELNELD---Y 442

Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
             +  +  +  ++  + + +   A T+ + E ++  + LL+   + + E         + 
Sbjct: 443 YDSPSVNARCQKICDQWDNLG--ALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNW 500

Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
           +E   E+     ++   + + +E             + L    +  +    +     + +
Sbjct: 501 MEGAMED-----LQDTFIVHTIE-----------EIQGLTTAHEQFKATLPDADKERQAI 544

Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKY 705
           +     +   ++    +    +  +    Q +  + +++  L+  +D+ + +  A+  + 
Sbjct: 545 LGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQN 604

Query: 706 EKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ 765
           E+                  ++TK EE+ +   ++    +  LN ++  E    + K   
Sbjct: 605 ERLRKQFGAQANVIG---PWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKI 661

Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
           ++L   ++   +A+  +               +        +QL   +     E+E 
Sbjct: 662 DQLEGDHQQIQEALIFD---------NKHTNYTMEHIRVGWEQLLTTIARTINEVEN 709

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEM--KCAQLKPSLEASAAT 801
           C    + +   +        + E +L   E++   V+  +  +       + S       
Sbjct: 23  CG-IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDA 81

Query: 802 PSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSP 861
            +   +++ +++   +A +    + +R LQ       + I NLK ++ + + Q Q+    
Sbjct: 82  ATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKD 141

Query: 862 LKGLENQMAK 871
              + +   K
Sbjct: 142 TVQIHDITGK 151

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 31/285 (10%), Positives = 97/285 (34%), Gaps = 7/285 (2%)

Query: 389 LAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFY 448
           L   E       + +     ++    + +   ++      ++++L + H +      + +
Sbjct: 309 LPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVF 368

Query: 449 KTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY-KSLSEEH 507
                +   +    Q E  ++ E   +   +   +         L  + +   + +    
Sbjct: 369 IR--SSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGI 426

Query: 508 EDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDE 567
               G  +   ++ +DL  K  E   K  Q    ++   +  ++    + +      L E
Sbjct: 427 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT--DAILQTDQTLTE 484

Query: 568 AKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ--RDYLIAVKTDGAEELQ 625
            ++E + +  + E  ++  + L E +R       + E   ++  +     ++ D  + L+
Sbjct: 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544

Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQS 670
           E+   +  K QE+  + +    ++  ++     DL++        
Sbjct: 545 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 41.9 bits (97), Expect = 9e-04
 Identities = 42/262 (16%), Positives = 97/262 (37%), Gaps = 6/262 (2%)

Query: 565 LDEAKEEFKEQTTEIEQLRSE-VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
           + +A   +++Q  +  QL +E +++L +  R     + E+      +D     + + A +
Sbjct: 328 VQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQ 387

Query: 624 LQEKLDYMENKFQEESLVY--ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
           L++K D    + QE S       L      L  ++KA + S            Q L+K+ 
Sbjct: 388 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 447

Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
                  +  ++ +                  +    KEK+I   + K E        L 
Sbjct: 448 YEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKML- 506

Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
              +      + ME  ERS + + ++L +  E+    +  E       +L+   +     
Sbjct: 507 --HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564

Query: 802 PSQYRKQLEDQVNSLKAELEQR 823
             +  + +++++  L+ ++ +R
Sbjct: 565 FQKESRIMKNEIQDLQTKMRRR 586

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 403 QIREE---YREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLV 459
           ++ +E    R+ +E+ RK  +E     +   ++ RE+ ++DLE   +    Q+E      
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------ 132

Query: 460 KNQQAEDDSEDETLNE 475
           KN+     ++     +
Sbjct: 133 KNKINNRIADKAFYQQ 148

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE-----E 557
           LS     +  KLKEL  E R+ + + K  +    +  + +EE+      E   E     +
Sbjct: 88  LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ 147

Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
              L   +    +   E+  ++ +L + ++K   ER
Sbjct: 148 FDILNKAVTSYNKILTEEDLQMRRLATALQKEIGER 183

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
           EDE  NE      +    +   +EL E+       +    +   +   L +         
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162

Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK-EQTTEIEQLRSEVE 587
            E + ++ +L+  +++ E G +T  +   VK  +  +D  K   + E+    E+   E+ 
Sbjct: 163 TEEDLQMRRLATALQK-EIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIA 221

Query: 588 KLSEE 592
            ++ +
Sbjct: 222 GMTAD 226

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 17/196 (8%), Positives = 60/196 (30%), Gaps = 8/196 (4%)

Query: 407 EYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKT-----QI-ETLMTLVK 460
              E  +D+              VK   ++  + +E  R   +      +I    ++   
Sbjct: 71  LNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKD 130

Query: 461 NQQAEDDSEDETLNESAIEAQHKLK--IQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
                ++       ++ +  Q  ++        ELS +  +     +  ++     +++ 
Sbjct: 131 YSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIE 190

Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
           + ++      K       +L               +       +   +    E ++   E
Sbjct: 191 KLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAE 250

Query: 579 IEQLRSEVEKLSEERR 594
            +++ ++  K+ ++R+
Sbjct: 251 EKKILNQFLKIKKKRK 266

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 15/151 (9%), Positives = 54/151 (35%), Gaps = 8/151 (5%)

Query: 401 EYQI---REEYREVQEDFRK----MFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIE 453
            Y+I      Y++           +  +    ++ +V+++  Q   +L R  +     I+
Sbjct: 118 SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ 177

Query: 454 TLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGK 513
                 + ++  +              +   +++  K    E+  +       +++  G+
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRG-SRYDEAEGR 236

Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
            + +  E   L  + K++  +  ++ ++ +E
Sbjct: 237 FEVINNETEQLKAEEKKILNQFLKIKKKRKE 267

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 14/180 (7%)

Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
           ++I +L +E+  LE   +   ++ +      +   +   +L  +   L+ +V++  + ++
Sbjct: 11  IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70

Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
           +            ++  ++  + E K E      E+  L  E +   E           L
Sbjct: 71  DTN---------AKIASIQKKMSEIKSE-----RELRSLNIEEDIAKERSNQANREIENL 116

Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
           + E++++            EL++    +E+  + E    +            L    E  
Sbjct: 117 QNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} Length = 877

 Score = 43.0 bits (100), Expect = 5e-04
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 5/286 (1%)

Query: 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
           +    RR  E +  A+  +  E  K +K  L   KE    +     +  +E +       
Sbjct: 553 ITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKE-LAGKALNFNKAVAEAKSTGNYDE 611

Query: 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYE--RLMSEKENL 652
           +      +LE  L +R++L        E      + ME K Q  S   E   L++++ N 
Sbjct: 612 V-KKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANR 670

Query: 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
            ++  A  ++ +    + +   + + K++K+      +         +K  +  K     
Sbjct: 671 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGS 730

Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
            +D     + I++++     L +       D         ++EN  +    NQ+   K+ 
Sbjct: 731 VKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKV- 789

Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKA 818
           ++  +AV    A    ++++  L        +   Q   +      
Sbjct: 790 DNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNT 835

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	932
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.92
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.88
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.44
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.27
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.26
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.14
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.84
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.35
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.69
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.09
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.66
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.19
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	93.44
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	93.02
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	92.38
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.89
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	89.98
2qgz_A	308	Helicase loader, putative primosome component; str	89.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.34
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	86.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	84.08
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.99
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	82.74
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	82.14
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	81.81
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	81.45
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	80.05

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=6.3e-65  Score=542.35  Aligned_cols=271  Identities=25%  Similarity=0.418  Sum_probs=213.4

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEe-CCCeEEEcCCCCc--cccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVL-DQKSIMFKPMKDM--KCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ++.|++    |+||+++.|...+...|+.+. +..+|.+.+|...  ..........|.||+||++.++|.+||+.++.|
T Consensus         5 ~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p   80 (350)
T 2vvg_A            5 NIKVIV----RCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKP   80 (350)
T ss_dssp             BCEEEE----EECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHH
T ss_pred             CeEEEE----EeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHH
Confidence            455555    999999999766777788765 4568888877521  111123345899999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||.|                                                   
T Consensus        81 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~  160 (350)
T 2vvg_A           81 LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK  160 (350)
T ss_dssp             HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEE
T ss_pred             HHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcC
Confidence            99999999999999999999999999998                                                   


Q ss_pred             ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEE
Q psy16994        157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDIC  220 (932)
Q Consensus       157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~v  220 (932)
                                     ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... +......|+|+||
T Consensus       161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lV  240 (350)
T 2vvg_A          161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV  240 (350)
T ss_dssp             ECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEE
T ss_pred             ceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEE
Confidence                           788999999999999999999999999999999999999999999987443 3345678999999


Q ss_pred             eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994        221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV  300 (932)
Q Consensus       221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~  300 (932)
                      |||||||..++++.|.+++|+.+||+||++||+||.+|..++       .|||||+||||+||+|+|||++ +|+||+||
T Consensus       241 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-kt~mI~~i  312 (350)
T 2vvg_A          241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-------THIPYRDSKLTRLLQDSLGGNS-KTLMCANI  312 (350)
T ss_dssp             ECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-------SSCCGGGCHHHHHTTTTTTSSS-EEEEEEEE
T ss_pred             eCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-------CCCCccccHHHHHHHHhcCCCc-cEEEEEEe
Confidence            999999999999999999999999999999999999999864       8999999999999999999999 99999999


Q ss_pred             CCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994        301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLP  333 (932)
Q Consensus       301 ~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~  333 (932)
                      +|...+++||++||+||++|+.|++.|..|..|
T Consensus       313 sP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~  345 (350)
T 2vvg_A          313 SPASTNYDETMSTLRYADRAKQIKNKPRINEDP  345 (350)
T ss_dssp             CCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred             CCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence            999999999999999999999999999988554

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4e-65  Score=547.44  Aligned_cols=271  Identities=27%  Similarity=0.408  Sum_probs=192.6

Q ss_pred             chhhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994         47 SKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH  126 (932)
Q Consensus        47 ~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~  126 (932)
                      ....++.|++    ||||+.+.|.......|+...++.++.+.++..     ......|.||+||++.++|.+||+.++.
T Consensus        18 ~~~~~irV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~-----~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~   88 (388)
T 3bfn_A           18 GPPARVRVAV----RLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN-----HQETLKYQFDAFYGERSTQQDIYAGSVQ   88 (388)
T ss_dssp             SCCCCCEEEE----EECCCC----------------------------------CEEEEECSEEECTTCCHHHHHHHHTG
T ss_pred             CCCCCEEEEE----ECCCCChhhhccCCCceEEecCCCeEEEecCCC-----CCCeeEEEcceEecCCCCHhHHHHHHHH
Confidence            3445556665    999999998666566788777777776654431     1234579999999999999999999999


Q ss_pred             HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994        127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------  156 (932)
Q Consensus       127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------  156 (932)
                      |+|+++++|||+||||||||||||||||+|                                                  
T Consensus        89 plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~  168 (388)
T 3bfn_A           89 PILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD  168 (388)
T ss_dssp             GGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSS
T ss_pred             HHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhc
Confidence            999999999999999999999999999988                                                  


Q ss_pred             --------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEE
Q psy16994        157 --------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSS  216 (932)
Q Consensus       157 --------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~  216 (932)
                                          ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.....+.....|+
T Consensus       169 ~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~sk  248 (388)
T 3bfn_A          169 PASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGK  248 (388)
T ss_dssp             CSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEE
T ss_pred             cCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEE
Confidence                                788999999999999999999999999999999999999999999988655445567899


Q ss_pred             EEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEE
Q psy16994        217 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM  296 (932)
Q Consensus       217 l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~  296 (932)
                      |+|||||||||..++++.|.+++|+++||+||++||+||.+|..+.       .|||||+||||+||+|+|||++ +|+|
T Consensus       249 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-------~hVPYRdSkLTrlLqdsLgGns-kT~m  320 (388)
T 3bfn_A          249 LYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-------PRVPYRDSKLTRLLQDSLGGSA-HSIL  320 (388)
T ss_dssp             EEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTTTSSSTTC-EEEE
T ss_pred             EEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-------CCCcCcccHHHHHHHHhhCCCc-cEEE
Confidence            9999999999999999999999999999999999999999999754       7999999999999999999999 9999


Q ss_pred             EEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994        297 IVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP  334 (932)
Q Consensus       297 i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~  334 (932)
                      |+||+|...+++||++||+||++|+.|++.|+.|..+.
T Consensus       321 Ia~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~  358 (388)
T 3bfn_A          321 IANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQ  358 (388)
T ss_dssp             EEEECCSGGGHHHHHHHHHHHCSEEEEC----------
T ss_pred             EEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCC
Confidence            99999999999999999999999999999998875443

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=2.1e-64  Score=540.36  Aligned_cols=265  Identities=27%  Similarity=0.430  Sum_probs=241.7

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM  128 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~  128 (932)
                      .+++.|++    |+||+++.|...+...|+.+.++.++.+.+.        .....|.||+||++.++|.+||+.++.|+
T Consensus         5 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl   72 (355)
T 1goj_A            5 ANSIKVVA----RFRPQNRVEIESGGQPIVTFQGPDTCTVDSK--------EAQGSFTFDRVFDMSCKQSDIFDFSIKPT   72 (355)
T ss_dssp             SCBCEEEE----EECCCCHHHHTTTCCBCEEECSTTEEEECST--------TCCEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred             CCCeEEEE----ECCCCChHHhhcCCceEEEEcCCCeEEEccC--------CCccEEeeCeEECCCCccHHHHHHHHHHH
Confidence            34556665    9999999997777778888888777766432        23458999999999999999999999999


Q ss_pred             HHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------------
Q psy16994        129 LERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------  156 (932)
Q Consensus       129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------  156 (932)
                      |+++++|||+||||||||||||||||+|                                                    
T Consensus        73 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~  152 (355)
T 1goj_A           73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP  152 (355)
T ss_dssp             HHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST
T ss_pred             HHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccC
Confidence            9999999999999999999999999987                                                    


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF  217 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l  217 (932)
                                         ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|+|
T Consensus       153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skL  231 (355)
T 1goj_A          153 QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET-GSAKSGQL  231 (355)
T ss_dssp             TCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT-TEEEEEEE
T ss_pred             ccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC-CceeeeEE
Confidence                               7889999999999999999999999999999999999999999999886542 45678999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      +|||||||||+.++++.|.+++|+.+||+||++||+||.+|..+.      ..|||||+||||+||+|+|||++ +|+||
T Consensus       232 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-~t~mI  304 (355)
T 1goj_A          232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK------SSHVPYRDSKLTRILQESLGGNS-RTTLI  304 (355)
T ss_dssp             EEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS------CSCCCGGGCHHHHHTGGGTTSSC-EEEEE
T ss_pred             EEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC------CCCCCCccCHHHHHHHHHhCCCC-cEEEE
Confidence            999999999999999999999999999999999999999999853      47999999999999999999999 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP  333 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~  333 (932)
                      +||+|...+++||++||+||++|+.|++.|+.|..+
T Consensus       305 ~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~  340 (355)
T 1goj_A          305 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL  340 (355)
T ss_dssp             EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSS
T ss_pred             EEECcccccHHHHHHHHHHHHHHhhccCCceeCCCC
Confidence            999999999999999999999999999999987544

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=1.7e-64  Score=541.50  Aligned_cols=273  Identities=28%  Similarity=0.476  Sum_probs=229.8

Q ss_pred             chhhcccccccccccccCCCcccccCCCCceEEEe-CCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994         47 SKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVL-DQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIV  125 (932)
Q Consensus        47 ~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~  125 (932)
                      ...+++.|++    |+||+++.|...+...|+.+. +..+|.+.+|...   .......|.||+||++.++|.+||+.++
T Consensus        18 ~~~~~irV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~---~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~   90 (372)
T 3b6u_A           18 GSSESVRVVV----RCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT---AHEMPKTFTFDAVYDWNAKQFELYDETF   90 (372)
T ss_dssp             ---CBCEEEE----EECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT---TTCCCEEEECSEEECTTCCHHHHHHHTH
T ss_pred             CCCCCeEEEE----EcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC---CCCCceEEEcCeEeCCcCchHHHHHHHH
Confidence            3344556665    999999999766677777765 4577888777521   1234558999999999999999999999


Q ss_pred             HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994        126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------  156 (932)
Q Consensus       126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------  156 (932)
                      .|+|+++++|||+||||||||||||||||.|                                                 
T Consensus        91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~  170 (372)
T 3b6u_A           91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS  170 (372)
T ss_dssp             HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTS
T ss_pred             HHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCC
Confidence            9999999999999999999999999999988                                                 


Q ss_pred             ---------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCccee
Q psy16994        157 ---------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIM  213 (932)
Q Consensus       157 ---------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~  213 (932)
                                           ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....  +.....
T Consensus       171 ~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~  250 (372)
T 3b6u_A          171 KDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR  250 (372)
T ss_dssp             SCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEE
T ss_pred             CCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceE
Confidence                                 788999999999999999999999999999999999999999999987532  345567


Q ss_pred             EEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994        214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSST  293 (932)
Q Consensus       214 ~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~  293 (932)
                      .|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++      ..|||||+||||+||+|+|||++ +
T Consensus       251 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-k  323 (372)
T 3b6u_A          251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK------STHIPYRDSKLTRLLQDSLGGNA-K  323 (372)
T ss_dssp             EEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---------CCCGGGSHHHHHTTTTTTSSS-E
T ss_pred             EEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC------CCCCcccccHHHHHHHHhcCCCc-c
Confidence            8999999999999999999999999999999999999999999999753      47999999999999999999999 9


Q ss_pred             eEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994        294 VKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP  333 (932)
Q Consensus       294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~  333 (932)
                      |+||+||+|...+++||++||+||++|+.|++.|..|..+
T Consensus       324 t~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~  363 (372)
T 3b6u_A          324 TVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP  363 (372)
T ss_dssp             EEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--
T ss_pred             EEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCCh
Confidence            9999999999999999999999999999999999987543

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=7.4e-64  Score=550.26  Aligned_cols=312  Identities=26%  Similarity=0.377  Sum_probs=216.8

Q ss_pred             ccchhHHHhhcCCCCCCCCCCccCCccccccccCchhhcccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCC
Q psy16994         13 IPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPM   91 (932)
Q Consensus        13 ~pr~ldviFnSi~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~   91 (932)
                      +|-+|++.+...-....++.+..++.............++.|++    ||||+++.|...+...++.+.+ ...+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vrV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~   76 (443)
T 2owm_A            1 MPNSLDVHQRQTRSNVSTPTLRPRDDTASSFVSKDPGANVRVVV----RVRAFLPRELERNAECIVEMDPATERTSLLVP   76 (443)
T ss_dssp             ---------------------------------CCCCEECEEEE----EEECCCHHHHHTTCCCCEEECSSSCEEEECCC
T ss_pred             CCccccccccccccCCCCCCCCcccCCCCCCccCCCCCCeEEEE----EeCCCChHHhhcCCceEEEEcCCCccEEEecC
Confidence            58889998888654443322222222222333333444556655    9999999996666555555543 345555554


Q ss_pred             CCccc--------cCCCCCcceecceecCC-------CCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994         92 KDMKC--------SITDTCNLYRFSNIYGP-------HTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus        92 ~~~~~--------~~~~~~~~f~fd~v~~~-------~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .....        ......+.|.||+||++       .++|.+||+.++.|+|+++++|||+||||||||||||||||+|
T Consensus        77 ~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G  156 (443)
T 2owm_A           77 QETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG  156 (443)
T ss_dssp             C---------------CCCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred             CCcccccccccccccccCCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence            31110        01123458999999976       4899999999999999999999999999999999999999988


Q ss_pred             ---------------------------------------------------------------------------ceEEE
Q psy16994        157 ---------------------------------------------------------------------------LTYVN  161 (932)
Q Consensus       157 ---------------------------------------------------------------------------l~~~~  161 (932)
                                                                                                 |+++.
T Consensus       157 ~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~  236 (443)
T 2owm_A          157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVP  236 (443)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEE
T ss_pred             CCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEE
Confidence                                                                                       77899


Q ss_pred             ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEEEEeCCCCccccccccchhhh
Q psy16994        162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFDICDLAGAERQKRAHTSGDRL  238 (932)
Q Consensus       162 v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~~vDLagse~~~~~~~~~~~~  238 (932)
                      |.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....   +......|+|+|||||||||+.++++.|.|+
T Consensus       237 V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rl  316 (443)
T 2owm_A          237 VRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRL  316 (443)
T ss_dssp             CCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC-----------
T ss_pred             cCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccc
Confidence            9999999999999999999999999999999999999999987432   2345578999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCC---------------CCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCC
Q psy16994        239 REARTINSSLHVLARCFNVLRENNGLK---------------ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNAS  303 (932)
Q Consensus       239 ~e~~~in~sl~~l~~~i~~l~~~~~~~---------------~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~  303 (932)
                      +|+.+||+||++||+||.+|+.++...               .....|||||+||||+||+|+|||++ +|+||+||+|.
T Consensus       317 kE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGns-kT~mIa~iSP~  395 (443)
T 2owm_A          317 REGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNS-KTAMIACISPT  395 (443)
T ss_dssp             ---CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSC-EEEEEEEECSS
T ss_pred             cchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCC-cEEEEEEeccc
Confidence            999999999999999999998764210               01246999999999999999999999 99999999995


Q ss_pred             cCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994        304 PAYAEETVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       304 ~~~~~et~~~l~~~~~~~~i~~~~~~~~  331 (932)
                        +|+||++||+||++|+.|++.|+.|.
T Consensus       396 --~~~ETlsTLrfA~rak~I~n~~~vN~  421 (443)
T 2owm_A          396 --DYDETLSTLRYADQAKRIRTRAVVNQ  421 (443)
T ss_dssp             --CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred             --cHHHHHHHHHHHHHHhhccccceecc
Confidence              59999999999999999999999885

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=8.4e-64  Score=536.67  Aligned_cols=259  Identities=30%  Similarity=0.500  Sum_probs=201.8

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc-cc------------cCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM-KC------------SITDTCNLYRFSNIYGPHTTQAELFQNIVH  126 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~-~~------------~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~  126 (932)
                      +|+||++..|...+...++.+.++.++.+.|+... ..            ........|.||+||++.++|.+||+.++.
T Consensus        16 vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~   95 (355)
T 3lre_A           16 VRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTK   95 (355)
T ss_dssp             EEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHHHHTTHH
T ss_pred             EEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHHHHHHHH
Confidence            39999999998778888999888887776654311 00            001233479999999999999999999999


Q ss_pred             HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994        127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------  156 (932)
Q Consensus       127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------  156 (932)
                      |+|+++++|||+||||||||||||||||+|                                                  
T Consensus        96 plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~  175 (355)
T 3lre_A           96 PILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG  175 (355)
T ss_dssp             HHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEESSSCCC
T ss_pred             HHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEECcCCCC
Confidence            999999999999999999999999999998                                                  


Q ss_pred             ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEE
Q psy16994        157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFD  218 (932)
Q Consensus       157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~  218 (932)
                                      ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+...  ......|+|+
T Consensus       176 ~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~  255 (355)
T 3lre_A          176 PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMS  255 (355)
T ss_dssp             CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEE
T ss_pred             CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEE
Confidence                            7888999999999999999999999999999999999999999999885432  3445679999


Q ss_pred             EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEE
Q psy16994        219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV  298 (932)
Q Consensus       219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~  298 (932)
                      |||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.    +..|||||+||||+||+|+|||++ +|+||+
T Consensus       256 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lL~dsLgGns-kt~mIa  330 (355)
T 3lre_A          256 LIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR----KNQHIPYRNSKLTRLLKDSLGGNC-QTIMIA  330 (355)
T ss_dssp             EEECCCCCC-----------------CHHHHHHHHHHHHHC------------CCGGGSHHHHHTTTTSSTTS-EEEEEE
T ss_pred             EEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCcCCcccCHHHHHHHHhcCCCc-eEEEEE
Confidence            999999999999999999999999999999999999999998642    347999999999999999999999 999999


Q ss_pred             ecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994        299 NVNASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       299 ~~~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      ||+|+..+|+||++||+||++||+|
T Consensus       331 ~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          331 AVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             EECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             EeCCchhhHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999986

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=5.9e-64  Score=537.97  Aligned_cols=259  Identities=28%  Similarity=0.451  Sum_probs=217.4

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeC---CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD---QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIV  125 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~  125 (932)
                      .+++.|++    |+||+.+.|...+...++.+++   ..++.+            .++.|.||+||++.++|.+||+.++
T Consensus        10 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~   73 (365)
T 2y65_A           10 EDSIKVVC----RFRPLNDSEEKAGSKFVVKFPNNVEENCISI------------AGKVYLFDKVFKPNASQEKVYNEAA   73 (365)
T ss_dssp             EEECEEEE----EECCCCHHHHHTTCCBCEECCSSSTTCEEEE------------TTEEEECSEEECTTCCHHHHHHHHT
T ss_pred             CCCeEEEE----EcCcCChhHhccCCceEEEeCCCCCCcEEEE------------CCEEEeCceEecCCCCHHHHHHHhh
Confidence            34556655    9999999996655555666554   234433            2347999999999999999999999


Q ss_pred             HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994        126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------  156 (932)
Q Consensus       126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------  156 (932)
                      .|+|+++++|||+||||||||||||||||.|                                                 
T Consensus        74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL  153 (365)
T 2y65_A           74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL  153 (365)
T ss_dssp             HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETT
T ss_pred             hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecc
Confidence            9999999999999999999999999999987                                                 


Q ss_pred             ---------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEE
Q psy16994        157 ---------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMS  215 (932)
Q Consensus       157 ---------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s  215 (932)
                                           ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|
T Consensus       154 ~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~s  232 (365)
T 2y65_A          154 DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-QKKLSG  232 (365)
T ss_dssp             CTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-CCEEEE
T ss_pred             cCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-CCEeEE
Confidence                                 7889999999999999999999999999999999999999999999876542 345789


Q ss_pred             EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994        216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK  295 (932)
Q Consensus       216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~  295 (932)
                      +|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++      ..|||||+||||+||+|+|||++ +|+
T Consensus       233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-kt~  305 (365)
T 2y65_A          233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN------KTHIPYRDSKLTRILQESLGGNA-RTT  305 (365)
T ss_dssp             EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCC------CSCCCGGGCHHHHHTGGGTTSSS-EEE
T ss_pred             EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCccccCHHHHHHHhhcCCCc-cEE
Confidence            99999999999999999999999999999999999999999999853      47999999999999999999999 999


Q ss_pred             EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994        296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~  331 (932)
                      ||+||+|+..+++||++||+||++|+.|++.|+.|.
T Consensus       306 mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~  341 (365)
T 2y65_A          306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE  341 (365)
T ss_dssp             EEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred             EEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCC
Confidence            999999999999999999999999999999998763

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=2.7e-63  Score=532.67  Aligned_cols=262  Identities=26%  Similarity=0.422  Sum_probs=230.8

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLE  130 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~  130 (932)
                      ++.|++    ||||+.+.|.......++...+..++.....       ......|.||+||++.++|.+||+. +.|+|+
T Consensus         6 ~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~   73 (369)
T 3cob_A            6 KIRVYC----RLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-------DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQ   73 (369)
T ss_dssp             BCEEEE----EECCCCHHHHHTTCCBCEEECSSSEEEEECT-------TSCEEEEECSEEECTTCCHHHHHHT-TTHHHH
T ss_pred             CeEEEE----ECCCCChhhccCCCcEEEEcCCcEEEEecCC-------CCCceEEecCEEECCCCCcceehhh-hhhhhH
Confidence            345554    9999999885544433333334434433211       1234589999999999999999999 799999


Q ss_pred             HhcCCCCceeeecccccCCCcEEEec------------------------------------------------------
Q psy16994        131 RYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------------  156 (932)
Q Consensus       131 ~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------------  156 (932)
                      ++++|||+||||||||||||||||+|                                                      
T Consensus        74 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~  153 (369)
T 3cob_A           74 SAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL  153 (369)
T ss_dssp             HHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred             hhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence            99999999999999999999999988                                                      


Q ss_pred             ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEE
Q psy16994        157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDIC  220 (932)
Q Consensus       157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~v  220 (932)
                                      ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+||
T Consensus       154 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL~lV  232 (369)
T 3cob_A          154 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLSFV  232 (369)
T ss_dssp             CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEEEE
T ss_pred             ceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-CCcEEEEEEEEE
Confidence                            788999999999999999999999999999999999999999999988654 345678999999


Q ss_pred             eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994        221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV  300 (932)
Q Consensus       221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~  300 (932)
                      |||||||+.++++.|.+++|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+|||++ +|+||+||
T Consensus       233 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-kt~mIa~i  304 (369)
T 3cob_A          233 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-------QHIPYRNHKLTMLMSDSLGGNA-KTLMFVNI  304 (369)
T ss_dssp             ECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-------SCCCGGGCHHHHHTTTTTTSSS-EEEEEEEE
T ss_pred             eCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-------CcCCCcCCHHHHHHHHhcCCCc-cEEEEEEe
Confidence            999999999999999999999999999999999999999854       7999999999999999999999 99999999


Q ss_pred             CCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994        301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLP  333 (932)
Q Consensus       301 ~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~  333 (932)
                      +|+..+++||++||+||++|+.|++.|..|..+
T Consensus       305 sP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~  337 (369)
T 3cob_A          305 SPAESNLDETHNSLTYASRVRSIVNDPSKNVSS  337 (369)
T ss_dssp             CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred             CCccccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence            999999999999999999999999999887443

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-63  Score=537.78  Aligned_cols=264  Identities=28%  Similarity=0.502  Sum_probs=220.7

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML  129 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v  129 (932)
                      +++.|++    ||||++..|.......++.+.++..+.+.++..     ......|.||+||++.++|.+||+.++.|+|
T Consensus        23 ~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv   93 (373)
T 2wbe_C           23 QNIQVYV----RVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD-----SKLTKKFTFDRSFGPESKQCDVYSVVVSPLI   93 (373)
T ss_dssp             EECEEEE----EECCCCHHHHHHTCCBCEEEETTTEEEESSSSS-----STTCEEEECSEEECTTCCHHHHHHHHHHHHH
T ss_pred             CCeEEEE----EcCCCChhhhccCCCceEEEcCCCeEEEecCCC-----CCCceEEeccEEeccccchhHHHHHHHHHHH
Confidence            4455555    999999998665667788888888887765431     1234589999999999999999999999999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      +++++|||+||||||||||||||||+|                                                     
T Consensus        94 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~D  173 (373)
T 2wbe_C           94 EEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCD  173 (373)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEE
T ss_pred             HHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEE
Confidence            999999999999999999999999986                                                     


Q ss_pred             --------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--C
Q psy16994        157 --------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--S  208 (932)
Q Consensus       157 --------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~  208 (932)
                                                ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.....+  +
T Consensus       174 LL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~  253 (373)
T 2wbe_C          174 LLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG  253 (373)
T ss_dssp             SSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTT
T ss_pred             CCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCC
Confidence                                      778899999999999999999999999999999999999999999987432  3


Q ss_pred             CcceeEEEEEEEeCCCCccccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc
Q psy16994        209 EELIMMSSFDICDLAGAERQKRAHTS-GDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL  287 (932)
Q Consensus       209 ~~~~~~s~l~~vDLagse~~~~~~~~-~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l  287 (932)
                      ......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|..++       .|||||+||||+||+|+|
T Consensus       254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsL  326 (373)
T 2wbe_C          254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-------PHVPYRESKLTRLLQESL  326 (373)
T ss_dssp             CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-------SCCCGGGCHHHHHTHHHH
T ss_pred             CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-------CcCccccchHHHHHHHHh
Confidence            34567899999999999999999987 9999999999999999999999999854       899999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        288 SGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       288 ~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      ||++ +|+||+||+|...+++||++||+||++|+.|++.|+.|
T Consensus       327 gGns-kt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN  368 (373)
T 2wbe_C          327 GGRT-KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN  368 (373)
T ss_dssp             HSSS-EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred             CCCc-eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceec
Confidence            9999 99999999999999999999999999999999999876

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=2.8e-63  Score=534.85  Aligned_cols=264  Identities=26%  Similarity=0.426  Sum_probs=214.4

Q ss_pred             cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC--------CChHHHHHHHHHHHHHHh
Q psy16994         61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH--------TTQAELFQNIVHNMLERY  132 (932)
Q Consensus        61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~--------~~q~~v~~~~~~~~v~~~  132 (932)
                      ||||++..|...+...++.+.+. ++.+.+|...    ......|.||+||++.        ++|.+||+.++.|+|+++
T Consensus        11 RvRP~~~~E~~~~~~~~v~~~~~-~~~i~~~~~~----~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~   85 (366)
T 2zfi_A           11 RVRPFNSREMSRDSKCIIQMSGS-TTTIVNPKQP----KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHA   85 (366)
T ss_dssp             EECCCCHHHHHTTCCBCEEEETT-EEEECCTTCT----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHH
T ss_pred             ECCCCChhhccCCCCeEEEECCC-cEEEeccCCC----CCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHH
Confidence            99999999866555555555554 4455444311    1234589999999987        899999999999999999


Q ss_pred             cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994        133 LNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------------  156 (932)
Q Consensus       133 ~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------------  156 (932)
                      ++|||+||||||||||||||||+|                                                        
T Consensus        86 l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~  165 (366)
T 2zfi_A           86 FEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN  165 (366)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSC
T ss_pred             hcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCC
Confidence            999999999999999999999988                                                        


Q ss_pred             ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEE
Q psy16994        157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFD  218 (932)
Q Consensus       157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~  218 (932)
                                     |+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....   +......|+|+
T Consensus       166 l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~  245 (366)
T 2zfi_A          166 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS  245 (366)
T ss_dssp             BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEE
T ss_pred             ceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEE
Confidence                           788999999999999999999999999999999999999999999886332   12345689999


Q ss_pred             EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994        219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL-----KADKKKLIPFRDSKLTQIFQRSLSGLSST  293 (932)
Q Consensus       219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~-----~~~~~~~vp~r~s~LT~ll~~~l~g~~~~  293 (932)
                      |||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.+     ...+..|||||+||||+||+|+|||++ +
T Consensus       246 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns-k  324 (366)
T 2zfi_A          246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNS-R  324 (366)
T ss_dssp             EEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTC-E
T ss_pred             EEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCc-e
Confidence            9999999999999999999999999999999999999999985411     112458999999999999999999999 9


Q ss_pred             eEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        294 VKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      |+||+||+|...+++||++||+||++|++|++.|+++
T Consensus       325 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~  361 (366)
T 2zfi_A          325 TAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN  361 (366)
T ss_dssp             EEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence            9999999999999999999999999999999998765

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.4e-63  Score=530.95  Aligned_cols=265  Identities=26%  Similarity=0.414  Sum_probs=223.8

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      .+++.|++    ||||++..|...+...++.+ .++.++...          .....|.||+||++.++|.+||+.++.|
T Consensus         3 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~i~~~----------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~p   68 (349)
T 1t5c_A            3 EGAVAVCV----RVRPLNSREESLGETAQVYWKTDNNVIYQV----------DGSKSFNFDRVFHGNETTKNVYEEIAAP   68 (349)
T ss_dssp             CCCEEEEE----EECCCSCSSCTTTTCCCCCEEEETTEEEET----------TSSCEEECSCEECTTSCHHHHHHHTTHH
T ss_pred             CCCEEEEE----ECCCCChhhhccCCCcEEEEeCCCCeEEEC----------CCCeEEECCEEECCCCCHHHHHHHHHHH
Confidence            34555555    99999999865444444433 334444332          1235899999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||+|                                                   
T Consensus        69 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~  148 (349)
T 1t5c_A           69 IIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKM  148 (349)
T ss_dssp             HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTT
T ss_pred             HHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCC
Confidence            99999999999999999999999999998                                                   


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC----CcceeEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS----EELIMMS  215 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~----~~~~~~s  215 (932)
                                       ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.....    ......|
T Consensus       149 ~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~s  228 (349)
T 1t5c_A          149 KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVS  228 (349)
T ss_dssp             CCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEE
T ss_pred             CCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEE
Confidence                             7889999999999999999999999999999999999999999999875432    2346789


Q ss_pred             EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994        216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK  295 (932)
Q Consensus       216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~  295 (932)
                      +|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++     ...|||||+||||+||+|+|||++ +|+
T Consensus       229 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~~~hvPyRdSkLT~lLqdsLgGns-kt~  302 (349)
T 1t5c_A          229 HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-----VGGFINYRDSKLTRILQNSLGGNA-KTR  302 (349)
T ss_dssp             EEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTC-----CTTSSCGGGSHHHHHTGGGTTSSS-EEE
T ss_pred             EEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccC-----CCCCCcccccHHHHHHHHhcCCCc-eEE
Confidence            99999999999999999999999999999999999999999999875     347999999999999999999999 999


Q ss_pred             EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCCC
Q psy16994        296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPP  335 (932)
Q Consensus       296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~~  335 (932)
                      ||+||+|.  +++||++||+||++|+.|++.|+.|..+.+
T Consensus       303 mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~  340 (349)
T 1t5c_A          303 IICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD  340 (349)
T ss_dssp             EEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred             EEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence            99999996  589999999999999999999998855543

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=1.2e-63  Score=528.84  Aligned_cols=249  Identities=27%  Similarity=0.434  Sum_probs=229.7

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML  129 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v  129 (932)
                      .++.|++    |+||+++.|...+...++.+.++.++.+.            ++.|.||+||++.++|.+||+.++.|+|
T Consensus         7 ~~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~------------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv   70 (325)
T 1bg2_A            7 CNIKVMC----RFRPLNESEVNRGDKYIAKFQGEDTVVIA------------SKPYAFDRVFQSSTSQEQVYNDCAKKIV   70 (325)
T ss_dssp             CEEEEEE----EECCCCHHHHHHTCCBCCEEETTTEEEET------------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred             CCEEEEE----EcCCCChhHhccCCeeEEEECCCCeEEEC------------CEEEECCeEeCCCCCHHHHHHHHhhhhH
Confidence            4455655    99999999976666677778888777662            2479999999999999999999999999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      +++++|||+||||||||||||||||.|                                                     
T Consensus        71 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~  150 (325)
T 1bg2_A           71 KDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK  150 (325)
T ss_dssp             HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC
T ss_pred             HHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC
Confidence            999999999999999999999999997                                                     


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI  219 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~  219 (932)
                                       ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|+|+|
T Consensus       151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skl~l  229 (325)
T 1bg2_A          151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-EQKLSGKLYL  229 (325)
T ss_dssp             CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-CCEEEEEEEE
T ss_pred             CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC-CcEEEEEEEE
Confidence                             7889999999999999999999999999999999999999999999876542 4457899999


Q ss_pred             EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994        220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN  299 (932)
Q Consensus       220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~  299 (932)
                      ||||||||..++++.|.+++|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+|||++ +|+||+|
T Consensus       230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-~t~mia~  301 (325)
T 1bg2_A          230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-------TYVPYRDSKMTRILQDSLGGNC-RTTIVIC  301 (325)
T ss_dssp             EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHGGGTSSSSC-EEEEEEE
T ss_pred             EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-------CCCcccccHHHHHHHHHhCCCC-cEEEEEE
Confidence            9999999999999999999999999999999999999999854       8999999999999999999999 9999999


Q ss_pred             cCCCcCcHHHHHHHHHHHHHhccc
Q psy16994        300 VNASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       300 ~~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      |+|+..+++||++||+||++|+.|
T Consensus       302 vsP~~~~~~ETl~TL~fa~rak~I  325 (325)
T 1bg2_A          302 CSPSSYNESETKSTLLFGQRAKTI  325 (325)
T ss_dssp             ECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             ECCccccHHHHHHHHHHHHHhccC
Confidence            999999999999999999999986

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=1.4e-63  Score=535.83  Aligned_cols=266  Identities=29%  Similarity=0.482  Sum_probs=217.8

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM  128 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~  128 (932)
                      .++.|++    |+||++..|...+...++.+.+ ..+|.+..+..   ......+.|.||+||++.++|.+||+.++.|+
T Consensus         8 ~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~---~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl   80 (359)
T 1x88_A            8 KNIQVVV----RCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL---ADKSSRKTYTFDMVFGASTKQIDVYRSVVCPI   80 (359)
T ss_dssp             -CCEEEE----EECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE---TTEEEEEEEECSEEECTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEE----EeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc---cCCcCceEEeceEEEeccCchhHHHHHHHHHh
Confidence            3455555    9999999986666666776654 45565543210   00112358999999999999999999999999


Q ss_pred             HHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------------
Q psy16994        129 LERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------  156 (932)
Q Consensus       129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------  156 (932)
                      |+++++|||+||||||||||||||||+|                                                    
T Consensus        81 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~  160 (359)
T 1x88_A           81 LDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELF  160 (359)
T ss_dssp             HHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEE
T ss_pred             HHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceee
Confidence            9999999999999999999999999975                                                    


Q ss_pred             -----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC--
Q psy16994        157 -----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD--  205 (932)
Q Consensus       157 -----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~--  205 (932)
                                                   |+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..  
T Consensus       161 DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~  240 (359)
T 1x88_A          161 DLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT  240 (359)
T ss_dssp             ETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEEC
T ss_pred             ehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEeccc
Confidence                                         6778899999999999999999999999999999999999999998763  


Q ss_pred             CCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhh
Q psy16994        206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQR  285 (932)
Q Consensus       206 ~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~  285 (932)
                      ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|..++       .|||||+||||+||+|
T Consensus       241 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqd  313 (359)
T 1x88_A          241 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-------PHVPYRESKLTRILQD  313 (359)
T ss_dssp             TTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTGG
T ss_pred             CCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-------CCCccccchHHHHHHH
Confidence            333445678999999999999999999999999999999999999999999999753       8999999999999999


Q ss_pred             hcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994        286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       286 ~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      +|||++ +|+||+||+|+..+++||++||+||++|+.|++.|+.|
T Consensus       314 sLgGns-kt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn  357 (359)
T 1x88_A          314 SLGGRT-RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN  357 (359)
T ss_dssp             GSSSSS-EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC--
T ss_pred             HhCCCC-eEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeC
Confidence            999999 99999999999999999999999999999999999876

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=1e-62  Score=527.45  Aligned_cols=259  Identities=21%  Similarity=0.319  Sum_probs=226.3

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC-CCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN-GED  137 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~-g~~  137 (932)
                      +|+||++..|...+...|+.+.++.++.+.+|.. ...........|.||+||++.++|.+||+.++.|+|.++++ |+|
T Consensus         6 vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n   85 (360)
T 1ry6_A            6 VRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCV   85 (360)
T ss_dssp             EEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCE
T ss_pred             EECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCce
Confidence            3999999999776677889998999998887651 11111112357999999999999999999999999999995 999


Q ss_pred             ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994        138 ALLFSFGTTNSGKTFTIQD-------------------------------------------------------------  156 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~~G-------------------------------------------------------------  156 (932)
                      +||||||||||||||||.|                                                             
T Consensus        86 ~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~e  165 (360)
T 1ry6_A           86 CSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE  165 (360)
T ss_dssp             EEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--------
T ss_pred             eEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCccceeeE
Confidence            9999999999999999987                                                             


Q ss_pred             ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994        157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE  226 (932)
Q Consensus       157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse  226 (932)
                                ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+...    ....|+|+||||||||
T Consensus       166 ~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~----~~~~skL~lVDLAGSE  241 (360)
T 1ry6_A          166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK----NTSLGKIAFIDLAGSE  241 (360)
T ss_dssp             ---CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT----TEEEEEEEEEECCCTT
T ss_pred             cCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC----CcceeEEEEEECCCCc
Confidence                      78899999999999999999999999999999999999999999987542    3567999999999999


Q ss_pred             cccccccch-hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcC
Q psy16994        227 RQKRAHTSG-DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA  305 (932)
Q Consensus       227 ~~~~~~~~~-~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~  305 (932)
                      |..++++.| .+++|+.+||+||++||+||.+|..+       ..|||||+||||+||+|+|||++ +|+||+||+|+..
T Consensus       242 r~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hvPyRdSkLT~lLqdsLgGns-kt~mIa~isP~~~  313 (360)
T 1ry6_A          242 RGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-------KNHIPFRDSELTKVLRDIFVGKS-KSIMIANISPTIS  313 (360)
T ss_dssp             GGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-------TTSCCGGGCHHHHHTGGGGSSSC-EEEEEEEECCBGG
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-------CCCCccccCHHHHHHHHHhCCCC-eEEEEEEeCCCcc
Confidence            999998876 57899999999999999999999764       38999999999999999999999 9999999999999


Q ss_pred             cHHHHHHHHHHHHHhcccccccCCC
Q psy16994        306 YAEETVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       306 ~~~et~~~l~~~~~~~~i~~~~~~~  330 (932)
                      +++||++||+||++|+.|++.|..+
T Consensus       314 ~~~ETlsTLrfA~rak~i~n~~~~~  338 (360)
T 1ry6_A          314 CCEQTLNTLRYSSRVKNKGNSKLEG  338 (360)
T ss_dssp             GHHHHHHHHHHHHHHCC--------
T ss_pred             cHHHHHHHHHHHHHHhhcccCcccC
Confidence            9999999999999999999977654

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=9.9e-62  Score=515.25  Aligned_cols=252  Identities=29%  Similarity=0.479  Sum_probs=213.7

Q ss_pred             cccccccccccccCCCcccccC-CCCceEEEe--CCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGS-TFENVLEVL--DQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ++.|++    ||||+.+.|... ....++.+.  ++..+.+.+.        .....|.||+||++.++|.+||+. +.|
T Consensus         5 ~i~V~v----RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~   71 (330)
T 2h58_A            5 NIRVIA----RVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK--------GKPVSFELDKVFSPQASQQDVFQE-VQA   71 (330)
T ss_dssp             CEEEEE----EECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET--------TEEEEEECSEEECTTCCHHHHHTT-THH
T ss_pred             CEEEEE----EcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC--------CCeeEEecCeEeCCCCCcHhHHHH-HHH
Confidence            345554    999999988432 223344442  2333333221        234589999999999999999998 589


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||+|                                                   
T Consensus        72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~  151 (330)
T 2h58_A           72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ  151 (330)
T ss_dssp             HHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC
T ss_pred             HHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc
Confidence            99999999999999999999999999998                                                   


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF  217 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l  217 (932)
                                         ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|
T Consensus       152 ~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL  230 (330)
T 2h58_A          152 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-TGLRTTGKL  230 (330)
T ss_dssp             CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-TTEEEEEEE
T ss_pred             ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-CCcEEEEEE
Confidence                               788999999999999999999999999999999999999999999987654 245678999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      +|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+|||++ +|+||
T Consensus       231 ~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lL~dsLgGns-~t~mI  302 (330)
T 2h58_A          231 NLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-------GHVPFRNSKLTYLLQDSLSGDS-KTLMV  302 (330)
T ss_dssp             EEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTHHHHSTTC-EEEEE
T ss_pred             EEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-------CCCcccccHHHHHHHHHhCCCc-eEEEE
Confidence            999999999999999999999999999999999999999998754       8999999999999999999999 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLL  324 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~  324 (932)
                      +||+|+..+++||++||+||.+|+.|.
T Consensus       303 ~~isP~~~~~~ETl~TL~fA~rak~i~  329 (330)
T 2h58_A          303 VQVSPVEKNTSETLYSLKFAERVRSVE  329 (330)
T ss_dssp             EEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred             EEeCCccccHHHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999985

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=2.1e-62  Score=529.20  Aligned_cols=262  Identities=24%  Similarity=0.332  Sum_probs=207.8

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ..++.|++    |+||++..|...+..+++.+.++.++.+++|.. ...........|.||+||++.++|.+||+.++.|
T Consensus        70 ~~~I~V~v----RvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~p  145 (410)
T 1v8k_A           70 EHRICVCV----RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARP  145 (410)
T ss_dssp             CCCEEEEE----EECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHH
T ss_pred             CCCeEEEE----EeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHH
Confidence            34455555    999999999776677888888888888876641 1111111234799999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||.|                                                   
T Consensus       146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~D  225 (410)
T 1v8k_A          146 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFD  225 (410)
T ss_dssp             HHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEE
T ss_pred             HHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEE
Confidence            99999999999999999999999999987                                                   


Q ss_pred             ----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994        157 ----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM  214 (932)
Q Consensus       157 ----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~  214 (932)
                                            |+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..      ...
T Consensus       226 LL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~------~~~  299 (410)
T 1v8k_A          226 LLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG------RLH  299 (410)
T ss_dssp             TTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS------SEE
T ss_pred             CCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC------cce
Confidence                                  7889999999999999999999999999999999999999999998642      367


Q ss_pred             EEEEEEeCCCCccccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhh-cCCCCC
Q psy16994        215 SSFDICDLAGAERQKRAH-TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS-LSGLSS  292 (932)
Q Consensus       215 s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~-l~g~~~  292 (932)
                      |+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|..+       ..|||||+||||+||+|+ |||++ 
T Consensus       300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hIPYRdSKLTrLLqdsllGgns-  371 (410)
T 1v8k_A          300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLTQVLRDSFIGENS-  371 (410)
T ss_dssp             EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------------CCCCHHHHHTTHHHHSSSE-
T ss_pred             eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-------CCCCCcccchhHHHHhhcccCCCc-
Confidence            999999999999988776 46778889999999999999999999864       389999999999999999 59998 


Q ss_pred             eeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994        293 TVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK  328 (932)
Q Consensus       293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~  328 (932)
                      +|+||+||+|+..+++||++||+||++|+.|..+|.
T Consensus       372 kT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~  407 (410)
T 1v8k_A          372 RTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH  407 (410)
T ss_dssp             EEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred             eEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence            999999999999999999999999999999976553

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=1e-61  Score=520.24  Aligned_cols=261  Identities=28%  Similarity=0.428  Sum_probs=205.5

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEeC----CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLD----QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH  126 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~  126 (932)
                      ++.|++    ||||+.+.|.......++...+    ..++.+..+..     ....+.|.||+||++.++|.+||+. +.
T Consensus         6 nIrV~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~   75 (349)
T 3t0q_A            6 NIRVYC----RVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG-----RILSYNFQFDMIFEPSHTNKEIFEE-IR   75 (349)
T ss_dssp             EEEEEE----EECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC-------CEEEEEEESEEECTTCCHHHHHHH-HH
T ss_pred             CcEEEE----EeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC-----cccceeeecCEEECCCccHHHHHHH-HH
Confidence            455665    9999999885544333333222    22444443321     1223579999999999999999998 67


Q ss_pred             HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994        127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------  156 (932)
Q Consensus       127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------  156 (932)
                      |+|+++++|||+||||||||||||||||+|                                                  
T Consensus        76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~  155 (349)
T 3t0q_A           76 QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKS  155 (349)
T ss_dssp             HHHHGGGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----
T ss_pred             HHHHHHHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccc
Confidence            999999999999999999999999999987                                                  


Q ss_pred             ----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC
Q psy16994        157 ----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS  208 (932)
Q Consensus       157 ----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~  208 (932)
                                                  ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+...
T Consensus       156 ~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~  235 (349)
T 3t0q_A          156 HDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT  235 (349)
T ss_dssp             -----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT
T ss_pred             ccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC
Confidence                                        5678899999999999999999999999999999999999999999886543


Q ss_pred             CcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcC
Q psy16994        209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLS  288 (932)
Q Consensus       209 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~  288 (932)
                       .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.    ...|||||+||||+||+|+||
T Consensus       236 -~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lLqdsLg  310 (349)
T 3t0q_A          236 -GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA----GKRYIPFRNSKLTYLLQYSLV  310 (349)
T ss_dssp             -CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG----GGSCCCGGGSHHHHHHGGGSS
T ss_pred             -CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC----CCCcCCCcCCHHHHHHHHhcC
Confidence             345789999999999999999999999999999999999999999999987642    236999999999999999999


Q ss_pred             CCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994        289 GLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA  327 (932)
Q Consensus       289 g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~  327 (932)
                      |++ +|+||+||+|...+++||++||+||++++.|+..+
T Consensus       311 Gns-kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~  348 (349)
T 3t0q_A          311 GDS-KTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK  348 (349)
T ss_dssp             TTC-EEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred             CCc-eEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence            999 99999999999999999999999999999998765

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=9.9e-62  Score=520.41  Aligned_cols=260  Identities=27%  Similarity=0.457  Sum_probs=205.4

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc--cccCCCCCcceecceec--------CCCCChHHHHHHHHHHHH
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM--KCSITDTCNLYRFSNIY--------GPHTTQAELFQNIVHNML  129 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~f~fd~v~--------~~~~~q~~v~~~~~~~~v  129 (932)
                      +||||++..|...+...++.+ ++..+.+.+|...  ........+.|.||+||        ++.++|.+||+.++.|+|
T Consensus         7 vRvRPl~~~E~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv   85 (354)
T 3gbj_A            7 VRIRPMNRRETDLHTKCVVDV-DANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENIL   85 (354)
T ss_dssp             EEECCCCHHHHHHTCCBCEEE-ETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHH
T ss_pred             EECCCCChhhhccCCceEEEe-CCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHHHH
Confidence            399999999966555444444 4556677766521  11112335589999999        456889999999999999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      +++++|||+||||||||||||||||+|                                                     
T Consensus        86 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~  165 (354)
T 3gbj_A           86 QNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSR  165 (354)
T ss_dssp             HHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred             HHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCC
Confidence            999999999999999999999999988                                                     


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC---CCCCcceeEEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD---PGSEELIMMSS  216 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~---~~~~~~~~~s~  216 (932)
                                       ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..   ..+......|+
T Consensus       166 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~sk  245 (354)
T 3gbj_A          166 QTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGK  245 (354)
T ss_dssp             -CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             cceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEE
Confidence                             7889999999999999999999999999999999999999999998762   22234457899


Q ss_pred             EEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEE
Q psy16994        217 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM  296 (932)
Q Consensus       217 l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~  296 (932)
                      |+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.+ .++..|||||+||||+||+|+|||++ +|+|
T Consensus       246 L~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~-~~~~~hvPyRdSkLT~lLqdsLgGns-kt~m  323 (354)
T 3gbj_A          246 LSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAG-KNKNKFVPYRDSVLTWLLKDSLGGNS-KTAM  323 (354)
T ss_dssp             EEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC-------CCCCCGGGSHHHHHTHHHHSTTC-EEEE
T ss_pred             EEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcc-cCCCCcccccccHHHHHHHHHhCCCC-eEEE
Confidence            999999999999999999999999999999999999999999985421 12458999999999999999999999 9999


Q ss_pred             EEecCCCcCcHHHHHHHHHHHHHhcc
Q psy16994        297 IVNVNASPAYAEETVQVLKISSVARD  322 (932)
Q Consensus       297 i~~~~p~~~~~~et~~~l~~~~~~~~  322 (932)
                      |+||+|...+|+||++||+||.+|+.
T Consensus       324 Ia~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          324 VATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             EEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             EEEeCCCcchHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999985

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=3.1e-62  Score=524.01  Aligned_cols=253  Identities=30%  Similarity=0.460  Sum_probs=205.8

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCC-CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQ-KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ..++.|++    ||||+.+.|...+...|+.+.++ ..+.+.           ....|.||+||+++++|.+||+.++.|
T Consensus        10 ~~~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-----------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p   74 (344)
T 4a14_A           10 EAPVRVAL----RVRPLLPKELLHGHQSCLQVEPGLGRVTLG-----------RDRHFGFHVVLAEDAGQEAVYQACVQP   74 (344)
T ss_dssp             CCCCEEEE----EECCCCHHHHHTTCCBCEEEEGGGTEEEET-----------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred             ccceEEEE----EecccchHHHhccCeeEEEEcCCCceEEec-----------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence            44556655    99999999976667788877543 444442           234799999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||.|                                                   
T Consensus        75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL  154 (344)
T 4a14_A           75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL  154 (344)
T ss_dssp             HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETT
T ss_pred             HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHH
Confidence            99999999999999999999999999976                                                   


Q ss_pred             -----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC------
Q psy16994        157 -----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG------  207 (932)
Q Consensus       157 -----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~------  207 (932)
                                             ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....      
T Consensus       155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~  234 (344)
T 4a14_A          155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR  234 (344)
T ss_dssp             SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred             HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence                                   788999999999999999999999999999999999999999999987432      


Q ss_pred             -CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhh
Q psy16994        208 -SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS  286 (932)
Q Consensus       208 -~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~  286 (932)
                       .......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+++    +..|||||+||||+||+|+
T Consensus       235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~~~hvPyRdSkLT~lLqds  310 (344)
T 4a14_A          235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR----RGSHIPYRDSKITRILKDS  310 (344)
T ss_dssp             ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTT----TTSCCCGGGCHHHHHTTTS
T ss_pred             ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccc----cCCCCCcchhhHHHHhHhh
Confidence             12345789999999999999999999999999999999999999999999998652    3479999999999999999


Q ss_pred             cCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994        287 LSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR  321 (932)
Q Consensus       287 l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~  321 (932)
                      |||++ +|+||+||+|...+|+||++||+||+|||
T Consensus       311 LgGns-kt~mI~~vsP~~~~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          311 LGGNA-KTVMIACVSPSSSDFDETLNTLNYASRAQ  344 (344)
T ss_dssp             SSTTS-EEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             cCCCc-ceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence            99999 99999999999999999999999999996

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=2.8e-62  Score=525.16  Aligned_cols=260  Identities=24%  Similarity=0.336  Sum_probs=206.1

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ..++.|++    |+||++..|...+...++.+++..++.+.+|.. ...........|.||+||++.++|.+||+.++.|
T Consensus        50 ~~~I~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~p  125 (387)
T 2heh_A           50 EHRICVCV----RKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARP  125 (387)
T ss_dssp             CCSEEEEE----EECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHH
T ss_pred             CCCeEEEE----ECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHH
Confidence            34555555    999999999766677788888888888876641 1111111234799999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|||+||||||||||||||||.|                                                   
T Consensus       126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~D  205 (387)
T 2heh_A          126 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFD  205 (387)
T ss_dssp             HHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEE
T ss_pred             HHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEE
Confidence            99999999999999999999999999987                                                   


Q ss_pred             ----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994        157 ----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM  214 (932)
Q Consensus       157 ----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~  214 (932)
                                            |+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.      ....
T Consensus       206 LL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~  279 (387)
T 2heh_A          206 LLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK------GRMH  279 (387)
T ss_dssp             TTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS------SSEE
T ss_pred             CCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC------Ceee
Confidence                                  788999999999999999999999999999999999999999999864      2367


Q ss_pred             EEEEEEeCCCCccccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc-CCCCC
Q psy16994        215 SSFDICDLAGAERQKRAH-TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL-SGLSS  292 (932)
Q Consensus       215 s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l-~g~~~  292 (932)
                      |+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|..+       ..|||||+||||+||+|+| ||++ 
T Consensus       280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hvPYRdSKLTrlLqdsllGgns-  351 (387)
T 2heh_A          280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLTQVLRDSFIGENS-  351 (387)
T ss_dssp             EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-------CSCCCGGGSHHHHHTGGGGSSTTE-
T ss_pred             eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-------CCCCCccccHHHHHHhhhccCCCC-
Confidence            999999999999998776 46788899999999999999999999974       3899999999999999995 8888 


Q ss_pred             eeEEEEecCCCcCcHHHHHHHHHHHHHhcccccc
Q psy16994        293 TVKMIVNVNASPAYAEETVQVLKISSVARDLLTV  326 (932)
Q Consensus       293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~  326 (932)
                      +|+||+||+|+..+++||++||+||++|++|++.
T Consensus       352 kT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~  385 (387)
T 2heh_A          352 RTCMIATISPGISSCEYTLNTLRYADRVKELSPH  385 (387)
T ss_dssp             EEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             eEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence            9999999999999999999999999999999864

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-62  Score=525.17  Aligned_cols=257  Identities=28%  Similarity=0.456  Sum_probs=203.5

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCcc---ccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMK---CSITDTCNLYRFSNIYGPHTTQAELFQNIV  125 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~  125 (932)
                      .++.|++    ||||+...+.     .++.+ .+..+|.+.+|....   .......+.|.||+||+ +++|.+||+.++
T Consensus        24 ~~i~V~v----RvRP~~~~e~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~   93 (359)
T 3nwn_A           24 KKVHAFV----RVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA   93 (359)
T ss_dssp             CCEEEEE----EECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred             CCEEEEE----EcCCCCcccc-----cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHH
Confidence            4556666    9999876552     23443 456677777765221   11223345799999997 589999999999


Q ss_pred             HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994        126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------  156 (932)
Q Consensus       126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------  156 (932)
                      .|+|+++++|||+||||||||||||||||+|                                                 
T Consensus        94 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~  173 (359)
T 3nwn_A           94 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS  173 (359)
T ss_dssp             HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred             HHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccc
Confidence            9999999999999999999999999999998                                                 


Q ss_pred             -------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCc
Q psy16994        157 -------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEE  210 (932)
Q Consensus       157 -------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~  210 (932)
                                               ++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.... ...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~  253 (359)
T 3nwn_A          174 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE  253 (359)
T ss_dssp             SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred             cccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCc
Confidence                                     778899999999999999999999999999999999999999999887432 234


Q ss_pred             ceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCC
Q psy16994        211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL  290 (932)
Q Consensus       211 ~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~  290 (932)
                      ....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++      ..|||||+||||+||+|+|||+
T Consensus       254 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~------~~hVPYRdSkLT~lLqdsLgGn  327 (359)
T 3nwn_A          254 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK------RDHIPFRQCKLTHALKDSLGGN  327 (359)
T ss_dssp             CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----------CCGGGSHHHHHTHHHHSSS
T ss_pred             ccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcC------CCcCCcccCHHHHHHHHhcCCC
Confidence            5678999999999999999999999999999999999999999999998753      4799999999999999999999


Q ss_pred             CCeeEEEEecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994        291 SSTVKMIVNVNASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       291 ~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      + +|+||+||+|...+|+||++||+||++||.|
T Consensus       328 s-kt~mI~~isP~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          328 C-NMVLVTNIYGEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             S-EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred             c-cEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence            9 9999999999999999999999999999986

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=2e-61  Score=516.51  Aligned_cols=260  Identities=29%  Similarity=0.445  Sum_probs=209.1

Q ss_pred             cccccccccccccCCCc-ccccCCCCceEEEeC------CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQ-SYAGSTFENVLEVLD------QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQN  123 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~-~e~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~  123 (932)
                      ++.|++    ||||+.+ .|..  ...++.+..      ..++.+..+.     .......|.||+||++.++|.+||+.
T Consensus         4 nIrV~v----RvRP~~~~~e~~--~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~f~FD~Vf~~~~~Q~~Vy~~   72 (347)
T 1f9v_A            4 NIRVYC----RIRPALKNLENS--DTSLINVNEFDDNSGVQSMEVTKIQ-----NTAQVHEFKFDKIFDQQDTNVDVFKE   72 (347)
T ss_dssp             EEEEEE----EECCCCTTTCCC--TTEEEEECCCBTTTTBEEEEEEEGG-----GTTCEEEEEESEEECTTCCHHHHHHH
T ss_pred             CeEEEE----EeCCCCcccccC--CCceEEEecccCCCCceEEEEecCC-----CCcCceEEeeCEEECCCCCHHHHHHH
Confidence            345555    9999987 3321  223333321      1244444332     11234589999999999999999998


Q ss_pred             HHHHHHHHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------
Q psy16994        124 IVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------  156 (932)
Q Consensus       124 ~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------  156 (932)
                       +.|+|+++++|||+||||||||||||||||+|                                               
T Consensus        73 -v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~  151 (347)
T 1f9v_A           73 -VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS  151 (347)
T ss_dssp             -HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-
T ss_pred             -HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCC
Confidence             57999999999999999999999999999987                                               


Q ss_pred             -----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC
Q psy16994        157 -----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG  207 (932)
Q Consensus       157 -----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~  207 (932)
                                                   ++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~  231 (347)
T 1f9v_A          152 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK  231 (347)
T ss_dssp             ------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-
T ss_pred             ccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC
Confidence                                         566789999999999999999999999999999999999999999987654


Q ss_pred             CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc
Q psy16994        208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL  287 (932)
Q Consensus       208 ~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l  287 (932)
                      . .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.    +..|||||+||||+||+|+|
T Consensus       232 ~-~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lLqdsL  306 (347)
T 1f9v_A          232 T-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----TKRHIPFRNSKLTYLLQYSL  306 (347)
T ss_dssp             --CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CCCCGGGSHHHHHHHHHH
T ss_pred             C-CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC----CCCcCccccCHHHHHHHHHh
Confidence            2 345789999999999999999999999999999999999999999999987642    24899999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994        288 SGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK  328 (932)
Q Consensus       288 ~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~  328 (932)
                      ||++ +|+||+||+|+..+++||++||+||++++.|+..+.
T Consensus       307 gGns-kt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r  346 (347)
T 1f9v_A          307 TGDS-KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  346 (347)
T ss_dssp             STTC-EEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred             CCCc-cEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence            9999 999999999999999999999999999999988763

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.8e-61  Score=517.38  Aligned_cols=259  Identities=27%  Similarity=0.426  Sum_probs=194.0

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEE--------eCCCeEEEcCCCCccc-----cCCCCCcceecceecCCCCC
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEV--------LDQKSIMFKPMKDMKC-----SITDTCNLYRFSNIYGPHTT  116 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~--------~~~~~v~~~~~~~~~~-----~~~~~~~~f~fd~v~~~~~~  116 (932)
                      +++.|++    ||||+++.|...... ++.+        .++.++.+.+|.....     ........|.||+||++.++
T Consensus        22 ~~irV~v----RvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~   96 (376)
T 2rep_A           22 GNIRVFC----RVRPVLPGEPTPPPG-LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSG   96 (376)
T ss_dssp             -CEEEEE----EECCCCTTSCCCCGG-GSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCC
T ss_pred             CCeEEEE----EcCCCChhhcccCCc-eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCccc
Confidence            3455555    999999998544322 1211        3456677765431100     01123357999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------------------------------------
Q psy16994        117 QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------  156 (932)
Q Consensus       117 q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------  156 (932)
                      |.+||+. +.|+|+++++|||+||||||||||||||||.|                                        
T Consensus        97 Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~  175 (376)
T 2rep_A           97 QDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYV  175 (376)
T ss_dssp             HHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEE
T ss_pred             chhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEE
Confidence            9999998 56999999999999999999999999999987                                        


Q ss_pred             ---------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEE
Q psy16994        157 ---------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF  197 (932)
Q Consensus       157 ---------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~  197 (932)
                                                             ++++.|.|++|++.+|..|..+|++++|.+|..|||||+||
T Consensus       176 EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If  255 (376)
T 2rep_A          176 EIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVF  255 (376)
T ss_dssp             EEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEE
T ss_pred             EEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEE
Confidence                                                   66788999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccch----hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Q psy16994        198 SIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP  273 (932)
Q Consensus       198 ~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~----~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp  273 (932)
                      +|+|.+.+.. ......|+|+|||||||||+.++++.|    .|++|+.+||+||++||+||.+|+.++       .|||
T Consensus       256 ti~v~~~~~~-~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-------~hVP  327 (376)
T 2rep_A          256 QLQISGEHSS-RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-------SHVP  327 (376)
T ss_dssp             EEEEEEEESS-SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-------SCCC
T ss_pred             EEEEEEEecC-CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-------CccC
Confidence            9999987554 234568999999999999999999999    999999999999999999999999753       8999


Q ss_pred             CCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994        274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL  323 (932)
Q Consensus       274 ~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i  323 (932)
                      ||+||||+||+|+|||++ +|+||+||+|...+|+||++||+||+|++++
T Consensus       328 YRdSkLT~LLqdsLgGns-kT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~  376 (376)
T 2rep_A          328 YRNSKLTYLLQNSLGGSA-KMLMFVNISPLEENVSESLNSLRFASKVNQC  376 (376)
T ss_dssp             GGGSHHHHHTGGGTSTTC-EEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred             CcCCHHHHHHHHhhCCCC-eEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence            999999999999999999 9999999999999999999999999999864

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-61  Score=522.54  Aligned_cols=261  Identities=30%  Similarity=0.475  Sum_probs=213.0

Q ss_pred             cccccccccccccCCCcccccCCCCceEEEe--CC----CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHH
Q psy16994         51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVL--DQ----KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNI  124 (932)
Q Consensus        51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~--~~----~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~  124 (932)
                      ++.|++    ||||+.+.+.... ..++.+.  ++    .++.+..+.     .....+.|.||+||++.++|.+||+. 
T Consensus        60 nIrV~v----RvRP~~~~~e~~~-~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~F~FD~VF~~~~~Q~~Vf~~-  128 (403)
T 4etp_A           60 NIRVYL----RIRPALKNLENSD-TSLINVNEFDDNSGVQSMEVTKIQ-----NTAQVHEFKFDKIFDQQDTNVDVFKE-  128 (403)
T ss_dssp             SEEEEE----EECCCCTTTSCSC-CTTEEECCCBTTTTBEEEEEEECS-----SSCEEEEEEESEEECTTCCHHHHHHH-
T ss_pred             CeEEEE----EeCCCCCcccccC-CCeeEEeeccCCCCceEEEEecCC-----CCcCceEEEcCEEECCCCchHHHHHH-
Confidence            345555    9999987732211 2233332  11    133333222     11234579999999999999999998 


Q ss_pred             HHHHHHHhcCCCCceeeecccccCCCcEEEec------------------------------------------------
Q psy16994        125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------  156 (932)
Q Consensus       125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------  156 (932)
                      +.|+|+++++|||+||||||||||||||||+|                                                
T Consensus       129 v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~  208 (403)
T 4etp_A          129 VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSD  208 (403)
T ss_dssp             HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-
T ss_pred             HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCc
Confidence            66999999999999999999999999999987                                                


Q ss_pred             ----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC
Q psy16994        157 ----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS  208 (932)
Q Consensus       157 ----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~  208 (932)
                                                  ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+...
T Consensus       209 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~  288 (403)
T 4etp_A          209 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT  288 (403)
T ss_dssp             -------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT
T ss_pred             cccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC
Confidence                                        6778999999999999999999999999999999999999999999886543


Q ss_pred             CcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcC
Q psy16994        209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLS  288 (932)
Q Consensus       209 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~  288 (932)
                       .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.    ...|||||+||||+||+|+||
T Consensus       289 -~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~LLqdsLg  363 (403)
T 4etp_A          289 -GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS----TKRHIPFRNSKLTYLLQYSLT  363 (403)
T ss_dssp             -CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT----TTSCCCGGGSHHHHHTGGGTS
T ss_pred             -CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCCcCCcccchHHHHHHHhcC
Confidence             345679999999999999999999999999999999999999999999987642    236999999999999999999


Q ss_pred             CCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994        289 GLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK  328 (932)
Q Consensus       289 g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~  328 (932)
                      |++ +|+||+||+|...+++||++||+||++++.|...|.
T Consensus       364 Gns-kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r  402 (403)
T 4etp_A          364 GDS-KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  402 (403)
T ss_dssp             TTC-EEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred             CCc-eEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence            999 999999999999999999999999999999988763

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=4.2e-61  Score=511.62  Aligned_cols=246  Identities=24%  Similarity=0.389  Sum_probs=192.3

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeC---CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD---QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH  126 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~  126 (932)
                      .++.|++    ||||+.+.+.. ....++.+++   +.++.+            ....|.||+||++.++|.+||+.++.
T Consensus        22 ~~VrV~v----RvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~------------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~   84 (344)
T 3dc4_A           22 SAVRIAV----REAPYRQFLGR-REPSVVQFPPWSDGKSLIV------------DQNEFHFDHAFPATISQDEMYQALIL   84 (344)
T ss_dssp             SEEEEEE----EECCCC--------CCSEECCSSSCSSEEEE------------TTEEEECSEEECTTCCHHHHHHHHTH
T ss_pred             CCeEEEE----ECCCCCccccc-CCceEEEecCCCCCceEEe------------cCcEEEcceEECCCCCHHHHHHhhcc
Confidence            4455554    99999877632 2334554432   333333            23479999999999999999999999


Q ss_pred             HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994        127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------  156 (932)
Q Consensus       127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------  156 (932)
                      |+|+++++|||+||||||||||||||||.|                                                  
T Consensus        85 plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i  164 (344)
T 3dc4_A           85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKP  164 (344)
T ss_dssp             HHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCE
T ss_pred             chhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCee
Confidence            999999999999999999999999999964                                                  


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF  217 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l  217 (932)
                                         ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.       ...|+|
T Consensus       165 ~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------~~~skl  237 (344)
T 3dc4_A          165 FDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------THHSRM  237 (344)
T ss_dssp             EETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-------SCEEEE
T ss_pred             EEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-------CcEEEE
Confidence                               577899999999999999999999999999999999999999999652       256999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      +|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+|||++ +|+||
T Consensus       238 ~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-------~hiPyRdSkLT~lLqdsLgGns-kt~mI  309 (344)
T 3dc4_A          238 NIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-------TVIPYRDSVLTTVLQASLTAQS-YLTFL  309 (344)
T ss_dssp             EEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-------SSCCGGGSHHHHHTTTTSSTTC-EEEEE
T ss_pred             EEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-------CcCCccccHHHHHHHHHhCCCC-EEEEE
Confidence            999999999999999999999999999999999999999999754       8999999999999999999999 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLLTVA  327 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~  327 (932)
                      +||+|...+++||++||+||++|+.....|
T Consensus       310 a~isP~~~~~~ETlsTL~fA~ra~~~~~~~  339 (344)
T 3dc4_A          310 ACISPHQCDLSETLSTLRFGTSAKAAALEH  339 (344)
T ss_dssp             EEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred             EEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999987554

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=3e-60  Score=516.79  Aligned_cols=260  Identities=25%  Similarity=0.400  Sum_probs=209.1

Q ss_pred             hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994         50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML  129 (932)
Q Consensus        50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v  129 (932)
                      +++.|++    ||||+.+.+.... ..++...++.+|.+.++.... ........|.||+||++.++|.+||+. +.|+|
T Consensus        59 gnIrV~v----RvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv  131 (412)
T 3u06_A           59 DNIRVFC----RIRPPLESEENRM-CCTWTYHDESTVELQSIDAQA-KSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLI  131 (412)
T ss_dssp             CSEEEEE----EECCCCGGGTTSC-BCEEEEEETTEEEEECCC--------CCCEEECSEEECTTCCHHHHHTT-THHHH
T ss_pred             CCEEEEE----EcCCCCchhccCc-ceEEEecCCCEEEEecCCccc-ccccCceEEeeCeEcCCCCCHHHHHHH-HHHHH
Confidence            3445555    9999998884432 223445677888877654211 111224589999999999999999985 67999


Q ss_pred             HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994        130 ERYLNGEDALLFSFGTTNSGKTFTIQD-----------------------------------------------------  156 (932)
Q Consensus       130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------------------------------------------------  156 (932)
                      +++++|||+||||||||||||||||+|                                                     
T Consensus       132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~  211 (412)
T 3u06_A          132 QSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD  211 (412)
T ss_dssp             HHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCC
T ss_pred             HHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCC
Confidence            999999999999999999999999988                                                     


Q ss_pred             -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994        157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI  219 (932)
Q Consensus       157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~  219 (932)
                                       ++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+|
T Consensus       212 ~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~~kL~l  290 (412)
T 3u06_A          212 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-KQEISVGSINL  290 (412)
T ss_dssp             CCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-TTEEEEEEEEE
T ss_pred             ceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-CCCEEEEEEEE
Confidence                             788999999999999999999999999999999999999999999987654 24567899999


Q ss_pred             EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994        220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN  299 (932)
Q Consensus       220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~  299 (932)
                      ||||||||..    .|.|++|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+|||++ +|+||+|
T Consensus       291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hiPyRdSkLT~LLqdsLgGns-kt~mI~~  358 (412)
T 3u06_A          291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ-------DHIPYRNSKLTHLLMPSLGGNS-KTLMFIN  358 (412)
T ss_dssp             EECCCCCC--------------CTTTHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHHGGGTSTTC-EEEEEEE
T ss_pred             EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccC-------CCCCccccHHHHHHHHhcCCCc-eEEEEEE
Confidence            9999999874    46899999999999999999999999754       8999999999999999999999 9999999


Q ss_pred             cCCCcCcHHHHHHHHHHHHHhcccccccCC
Q psy16994        300 VNASPAYAEETVQVLKISSVARDLLTVAKP  329 (932)
Q Consensus       300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~  329 (932)
                      |+|...+|+||++||+||++++.|...+..
T Consensus       359 vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~  388 (412)
T 3u06_A          359 VSPFQDCFQESVKSLRFAASVNSCKMTKAK  388 (412)
T ss_dssp             ECCBGGGHHHHHHHHHHHHHHHHHCC----
T ss_pred             eCCChhhHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999999999999977654

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=3e-55  Score=524.05  Aligned_cols=215  Identities=29%  Similarity=0.492  Sum_probs=182.5

Q ss_pred             CCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec------------------------
Q psy16994        101 TCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------  156 (932)
Q Consensus       101 ~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------  156 (932)
                      ..+.|.||+||++.++|.+||+. +.|+|+++++|+|+||||||||||||||||.|                        
T Consensus       428 ~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~  506 (715)
T 4h1g_A          428 SNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKG  506 (715)
T ss_dssp             EEEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGT
T ss_pred             CCeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCC
Confidence            34589999999999999999987 56999999999999999999999999999988                        


Q ss_pred             ----------------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCC
Q psy16994        157 ----------------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRS  190 (932)
Q Consensus       157 ----------------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~s  190 (932)
                                                                    |+++.|.|+++++.+|..|..+|++++|.+|.+|
T Consensus       507 ~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~s  586 (715)
T 4h1g_A          507 WSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHS  586 (715)
T ss_dssp             EEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CG
T ss_pred             ceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCcc
Confidence                                                          7889999999999999999999999999999999


Q ss_pred             CCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q psy16994        191 SRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK  270 (932)
Q Consensus       191 srsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~  270 (932)
                      ||||+||+|+|.+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+.      ..
T Consensus       587 sRSH~i~~i~~~~~~~~~-~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~------~~  659 (715)
T 4h1g_A          587 SRSHSIFIIDLQGYNSLT-KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKD------GS  659 (715)
T ss_dssp             GGSEEEEEEEEEEEETTT-CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCS------CC
T ss_pred             ccccEEEEEEEEEEecCC-CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC------CC
Confidence            999999999999886543 44678999999999999999999999999999999999999999999998653      47


Q ss_pred             CccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994        271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL  324 (932)
Q Consensus       271 ~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~  324 (932)
                      |||||+||||+||+++|||++ +|+||+||+|+..+++||++||+||+||++|+
T Consensus       660 ~vpyR~SkLT~lL~~slggn~-~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~  712 (715)
T 4h1g_A          660 HVPYRNSKLTYLLKHSLGGNS-KTLMFVNISPLTKDLNETINSLRFATKVNNTR  712 (715)
T ss_dssp             CCCGGGCHHHHHTGGGTSTTC-EEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred             cCCCccCHHHHHHHhhcCCCc-eEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence            999999999999999999999 99999999999999999999999999999996

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.92  E-value=3.7e-26  Score=192.68  Aligned_cols=82  Identities=29%  Similarity=0.432  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994        242 RTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR  321 (932)
Q Consensus       242 ~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~  321 (932)
                      .+||+||++||+||.+|..+.      ..|||||+||||+||+|+|||++ +|+||+||+|...+++||++||+||++|+
T Consensus         2 ~~IN~SL~~Lg~vI~aL~~~~------~~hvPyRdSkLT~lL~dsLgGns-kt~mi~~vsp~~~~~~ETl~TL~fA~rak   74 (100)
T 2kin_B            2 KNINKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLDGNC-RTTIVICCSPSVFNEAETKSTLMFGQRAK   74 (100)
T ss_dssp             CBSSHHHHHHHHHHHHHHHTC------CSSCCGGGCHHHHHTHHHHHSSE-EEEEEEEECCBGGGHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhcC------CCCCCCccchHHHHHHHHhcCCC-ceeEEEEeCcccchHHHHHHHHHHHHHHH
Confidence            469999999999999999863      48999999999999999999999 99999999999999999999999999999


Q ss_pred             ccccccCCC
Q psy16994        322 DLLTVAKPR  330 (932)
Q Consensus       322 ~i~~~~~~~  330 (932)
                      .|.+.|+.|
T Consensus        75 ~i~~~~~~n   83 (100)
T 2kin_B           75 TIKNTVSVN   83 (100)
T ss_dssp             TCEEEECCE
T ss_pred             hccCcceec
Confidence            999999876

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.88  E-value=1.7e-23  Score=183.93  Aligned_cols=79  Identities=29%  Similarity=0.418  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994        245 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL  324 (932)
Q Consensus       245 n~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~  324 (932)
                      |+||++||+||.+|+.++      ..|||||+||||+||+|+|||++ +|+||+||+|+..+++||++||+||++|+.|.
T Consensus         1 N~SL~~Lg~vi~aL~~~~------~~hvPyRdSkLT~lL~dsLggn~-~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~   73 (117)
T 3kin_B            1 NKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLGGNC-RTTIVICCSPSVFNEAETKSTLMFGQRAKTIK   73 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSC------CSSCCGGGSHHHHHTHHHHHSSS-EEEEEEEECCSGGGHHHHHHHHHHHHHHTTCE
T ss_pred             CCCHHHHHHHHHHHHhCC------CCCCCCcchHHHHHHHHHcCCCc-cceeeeeeCCCcccHHHHHHHHHHHHHhCccc
Confidence            789999999999999863      47999999999999999999999 99999999999999999999999999999999


Q ss_pred             cccCCC
Q psy16994        325 TVAKPR  330 (932)
Q Consensus       325 ~~~~~~  330 (932)
                      +.|.+|
T Consensus        74 n~~~~n   79 (117)
T 3kin_B           74 NTVSVN   79 (117)
T ss_dssp             EEECCC
T ss_pred             CCceec
Confidence            999876

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.44  E-value=8e-09  Score=109.29  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV  542 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~  542 (932)
                      ++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL   64 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.27  E-value=5.9e-12  Score=158.23  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=18.2

Q ss_pred             CCCCceeeecccccCCCcEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t  153 (932)
                      ++.|.||+..|.+|||||.+
T Consensus       166 ~~~~Q~i~isGeSGaGKTe~  185 (1184)
T 1i84_S          166 DREDQSILCTGESGAGKTEN  185 (1184)
T ss_dssp             HTCCEEEECCCSTTSSTTHH
T ss_pred             cCCCcEEEEecCCCCCccHH
Confidence            68999999999999999953

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.26  E-value=1.1e-11  Score=155.79  Aligned_cols=12  Identities=0%  Similarity=0.025  Sum_probs=7.2

Q ss_pred             eeEEEEecCCCc
Q psy16994        293 TVKMIVNVNASP  304 (932)
Q Consensus       293 ~~~~i~~~~p~~  304 (932)
                      ...+|-||-|+.
T Consensus       677 ~phfvRCIkPN~  688 (1184)
T 1i84_S          677 NPNFVRCIIPNH  688 (1184)
T ss_dssp             EEEECCEECCCS
T ss_pred             CCCceeeeCCCC
Confidence            556666666654

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.5e-11  Score=121.96  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             cceecceecCCCCChH--HHHHHHHHHHHHHhcC-CCCceeeecccccCCCc
Q psy16994        103 NLYRFSNIYGPHTTQA--ELFQNIVHNMLERYLN-GEDALLFSFGTTNSGKT  151 (932)
Q Consensus       103 ~~f~fd~v~~~~~~q~--~v~~~~~~~~v~~~~~-g~~~~i~~~G~tgsGKt  151 (932)
                      +.|.||+||+|..+|.  +||++ +.++|+.+++ |||+|||||||||||||
T Consensus        57 k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT  107 (298)
T 2o0a_A           57 HVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL  107 (298)
T ss_dssp             CEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH
T ss_pred             ceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc
Confidence            5899999999999999  99999 8999999999 99999999999999998

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.84  E-value=0.0047  Score=63.08  Aligned_cols=50  Identities=8%  Similarity=0.078  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        488 NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ  537 (932)
Q Consensus       488 ~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~  537 (932)
                      .+..++..++..+..+...+..+...+..+...+..++..+......+..
T Consensus        29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~   78 (256)
T 3na7_A           29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS   78 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444333333333333333333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.48  E-value=0.037  Score=50.53  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL  517 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l  517 (932)
                      ++..|+.++.++...+..-.+....++....++
T Consensus         7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl   39 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEM   39 (168)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            444555555555555444444333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.38  E-value=0.053  Score=73.15  Aligned_cols=17  Identities=41%  Similarity=0.546  Sum_probs=13.4

Q ss_pred             ceeeecccccCCCcEEE
Q psy16994        138 ALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~  154 (932)
                      -.|+.+|++|+|||.++
T Consensus      1305 ~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A         1305 RPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp             CCCEEESSTTSSHHHHH
T ss_pred             CcEEEECCCCCCHHHHH
Confidence            45667899999999654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.35  E-value=0.069  Score=72.10  Aligned_cols=31  Identities=6%  Similarity=-0.094  Sum_probs=16.8

Q ss_pred             HHHHHHhcccccccCCCCCCCCCCcccchhh
Q psy16994        314 LKISSVARDLLTVAKPRHLPPPPRKKTRFSI  344 (932)
Q Consensus       314 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  344 (932)
                      |....|+.+|...|..+..-.+...+++-|+
T Consensus      1632 leHv~RI~RIL~qp~GhaLLVGvgGSGkqSL 1662 (3245)
T 3vkg_A         1632 LDHILRIDRVFRQPQGHALLIGVSGGGKSVL 1662 (3245)
T ss_dssp             HHHHHHHHHHHTSTTCCEEEEESTTSSHHHH
T ss_pred             HHHHHHHHHHHccCCCCeEEecCCCCcHHHH
Confidence            3445566666666665555555555554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.69  E-value=0.26  Score=43.90  Aligned_cols=8  Identities=25%  Similarity=0.368  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q psy16994        569 KEEFKEQT  576 (932)
Q Consensus       569 ~~~l~~l~  576 (932)
                      ...+..+.
T Consensus        82 e~~l~el~   89 (129)
T 2fxo_A           82 EAKVKEMN   89 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.27  E-value=0.14  Score=62.96  Aligned_cols=20  Identities=20%  Similarity=0.420  Sum_probs=18.2

Q ss_pred             CCCCceeeecccccCCCcEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t  153 (932)
                      ++.|.||+..|.+|||||.+
T Consensus       153 ~~~~QsIiisGESGAGKTe~  172 (1080)
T 2dfs_A          153 DERNQSIIVSGESGAGKTVS  172 (1080)
T ss_dssp             HTCCEEEEEECSTTSSHHHH
T ss_pred             cCCCcEEEEcCCCCCCccch
Confidence            68999999999999999953

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.09  E-value=0.28  Score=57.05  Aligned_cols=9  Identities=22%  Similarity=0.264  Sum_probs=4.1

Q ss_pred             EEEEeCCCC
Q psy16994        217 FDICDLAGA  225 (932)
Q Consensus       217 l~~vDLags  225 (932)
                      |..+||.+.
T Consensus       234 L~~L~L~~n  242 (597)
T 3oja_B          234 LTILKLQHN  242 (597)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.19  E-value=15  Score=45.32  Aligned_cols=16  Identities=25%  Similarity=0.260  Sum_probs=11.5

Q ss_pred             EEEEEEEeCCCCcccc
Q psy16994        214 MSSFDICDLAGAERQK  229 (932)
Q Consensus       214 ~s~l~~vDLagse~~~  229 (932)
                      ...|-++|..|-|...
T Consensus       430 ~~~IgvLDI~GFE~f~  445 (1080)
T 2dfs_A          430 HSFIGVLDIYGFETFE  445 (1080)
T ss_dssp             CEEEEEEEECCCCCCS
T ss_pred             CceEEeeccCCccccC
Confidence            4567778888888655

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=93.44  E-value=2.9  Score=34.74  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994        728 TKCEELTQQVTKLEADCQSYLNTIKNMENDER  759 (932)
Q Consensus       728 ~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~  759 (932)
                      ...+....++..+..++..+..++.....++.
T Consensus        60 ~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           60 REYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444443333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=93.02  E-value=3.8  Score=34.85  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHH
Q psy16994        485 KIQNLKQELSELEAKYKSLSEEH  507 (932)
Q Consensus       485 ~i~~l~~~l~~l~~~l~~l~~~l  507 (932)
                      .+.+++..+..++.++.+.+.++
T Consensus        12 ~ia~L~~D~~s~~~eleEnqeEL   34 (167)
T 4gkw_A           12 EVADLKQDTESLQKQLEENQEEL   34 (167)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=92.38  E-value=0.031  Score=53.67  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~  155 (932)
                      .++||.+.+....+..++.. +..++.++--.....++-||++|+|||+.+.
T Consensus         6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~   56 (180)
T 3ec2_A            6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV   56 (180)
T ss_dssp             TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred             hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence            36788766655567777765 5666666544445567889999999999653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=89.98  E-value=0.1  Score=51.11  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCC-CceeeecccccCCCcEEE
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGE-DALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~-~~~i~~~G~tgsGKt~t~  154 (932)
                      .++|+.++.....+..++.. +..++.....+. +..|+-||++|+|||+.+
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred             cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence            35677766555456666664 455555544332 267888999999999954

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=89.43  E-value=0.11  Score=54.58  Aligned_cols=51  Identities=22%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      ++|+.+.....++..++. .+..++.....+....|+-||++|+||||.+.+
T Consensus       121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a  171 (308)
T 2qgz_A          121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA  171 (308)
T ss_dssp             CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred             CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence            567765544334555665 355667665555456788899999999996543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.34  E-value=13  Score=41.55  Aligned_cols=10  Identities=20%  Similarity=0.076  Sum_probs=4.8

Q ss_pred             EEEEEeCCCC
Q psy16994        216 SFDICDLAGA  225 (932)
Q Consensus       216 ~l~~vDLags  225 (932)
                      .|..+||.+.
T Consensus       145 ~L~~L~Ls~N  154 (487)
T 3oja_A          145 RVQYLDLKLN  154 (487)
T ss_dssp             SEEEEECTTS
T ss_pred             CCCEEECCCC
Confidence            4445555443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=86.54  E-value=5  Score=30.89  Aligned_cols=69  Identities=17%  Similarity=0.119  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994        803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK  871 (932)
Q Consensus       803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~  871 (932)
                      ..+...|..+..+|..-...+.-...||-.++.++.....-|..++...+......+.++.+++.++.+
T Consensus         8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr   76 (77)
T 2w83_C            8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344555555555665555556666667777777777777777777777777777666666676666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.31  E-value=19  Score=40.22  Aligned_cols=12  Identities=17%  Similarity=0.354  Sum_probs=6.8

Q ss_pred             EEEEEEeCCCCc
Q psy16994        215 SSFDICDLAGAE  226 (932)
Q Consensus       215 s~l~~vDLagse  226 (932)
                      ..|..+||.+..
T Consensus       191 ~~L~~L~Ls~N~  202 (487)
T 3oja_A          191 AKLKTLDLSSNK  202 (487)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEECCCCC
Confidence            345666666553

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=84.08  E-value=0.39  Score=49.99  Aligned_cols=37  Identities=19%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHhcC--CC--CceeeecccccCCCcEEE
Q psy16994        118 AELFQNIVHNMLERYLN--GE--DALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       118 ~~v~~~~~~~~v~~~~~--g~--~~~i~~~G~tgsGKt~t~  154 (932)
                      ..+.+.++..++..++.  |.  ...|+-||++|+|||+..
T Consensus        13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A           13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            44555666666666553  22  246778999999999854

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.99  E-value=16  Score=29.95  Aligned_cols=10  Identities=10%  Similarity=-0.247  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q psy16994        744 CQSYLNTIKN  753 (932)
Q Consensus       744 l~~l~~~l~~  753 (932)
                      ...+..+++.
T Consensus        72 k~~l~~e~dn   81 (93)
T 3s4r_A           72 KARVEVERDN   81 (93)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=82.74  E-value=6.6  Score=30.94  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy16994        811 DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINI  874 (932)
Q Consensus       811 ~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~  874 (932)
                      ..+..+..+...+...+..++..+......-..++.++..+.+.+.---..|.+|...|++|..
T Consensus        13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A           13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            3333444444444444445555555544455555555555555555444455566666666544

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=82.14  E-value=0.83  Score=46.69  Aligned_cols=50  Identities=18%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHH-----HHhcCCCCceeeecccccCCCcEEE
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNML-----ERYLNGEDALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v-----~~~~~g~~~~i~~~G~tgsGKt~t~  154 (932)
                      .+.|+.+++.......+... +..+-     ..+-......|+-||++|+|||+++
T Consensus         7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            47788999887766666543 22211     1111233455889999999999854

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=81.81  E-value=6.8  Score=44.62  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=16.9

Q ss_pred             ceecceecCCCCCh----HHHH-HHHHHHHHHHhcCCCCce
Q psy16994        104 LYRFSNIYGPHTTQ----AELF-QNIVHNMLERYLNGEDAL  139 (932)
Q Consensus       104 ~f~fd~v~~~~~~q----~~v~-~~~~~~~v~~~~~g~~~~  139 (932)
                      .|.|-.-|.+....    .++. .-....+..+++.|.-.|
T Consensus        77 ~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c  117 (575)
T 2i1j_A           77 QFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYC  117 (575)
T ss_dssp             EEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             EEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCC
Confidence            45565555544321    1222 222345566667666543

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=81.45  E-value=20  Score=30.91  Aligned_cols=14  Identities=21%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy16994        807 KQLEDQVNSLKAEL  820 (932)
Q Consensus       807 ~~l~~e~~~l~~el  820 (932)
                      ......|.+|+..+
T Consensus       102 qa~Eerf~KLKe~y  115 (120)
T 3i00_A          102 QANEQRYSKLKEKY  115 (120)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=80.05  E-value=0.36  Score=50.60  Aligned_cols=21  Identities=14%  Similarity=0.257  Sum_probs=18.3

Q ss_pred             cCCCCceeeecccccCCCcEE
Q psy16994        133 LNGEDALLFSFGTTNSGKTFT  153 (932)
Q Consensus       133 ~~g~~~~i~~~G~tgsGKt~t  153 (932)
                      ..|...+|+-||++|+|||.+
T Consensus        41 ~~~~~~~lli~GpPGTGKT~~   61 (318)
T 3te6_A           41 MSSQNKLFYITNADDSTKFQL   61 (318)
T ss_dssp             HTTCCCEEEEECCCSHHHHHH
T ss_pred             cCCCCCeEEEECCCCCCHHHH
Confidence            367888999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	932
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	2e-30
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	3e-28
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	1e-27
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-26
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	5e-05
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	5e-25
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	1e-04
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	6e-25
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	1e-04
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	2e-23
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	1e-06
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	7e-21
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	2e-19
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.004

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  121 bits (304), Expect = 2e-30
 Identities = 68/303 (22%), Positives = 112/303 (36%), Gaps = 46/303 (15%)

Query: 64  SFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFS----------NIYGP 113
           SFD SY   T    +    QK +     ++M     +  N+  F+           + G 
Sbjct: 48  SFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK 107

Query: 114 HTTQAE------LFQNIVHNMLERYLNGEDALLFSFGTTNSGK----------------- 150
                +                    N   ++  S+      +                 
Sbjct: 108 QEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVRE 167

Query: 151 ----TFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD- 205
                  ++DL+ + V S  +   ++  G    +VA T +N  SSRSH VF+I   +   
Sbjct: 168 HPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRH 227

Query: 206 --PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRE--- 260
               +     +S   + DLAG+ER       G RL+E   IN SL  L +  + L E   
Sbjct: 228 DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDS 287

Query: 261 --NNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
             N   K  K   IP+RDS LT + + +L G S T  M+  ++ +    +ET+  L+ + 
Sbjct: 288 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYAD 346

Query: 319 VAR 321
            A+
Sbjct: 347 RAK 349

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  114 bits (286), Expect = 3e-28
 Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 148 SGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207
             KT TI ++T   + S E    +L+      S A T  N  SS SH +F I L   +  
Sbjct: 170 ETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK 229

Query: 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
           +       + ++ DLAG+ER   +   GDRLRE + IN SL  L    + L + +     
Sbjct: 230 TGA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS---- 284

Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
            K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++  ET+  L+ +S   
Sbjct: 285 TKRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLRFASKVN 337

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 1e-27
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 152 FTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEEL 211
             ++  T   V S +E    +  GKS+  VA T +N  SSRSH +F I + + +  +E+ 
Sbjct: 161 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ- 219

Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
            +     + DLAG+E+  +    G  L EA+ IN SL  L    + L       A+    
Sbjct: 220 KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTY 272

Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
           +P+RDSK+T+I Q SL G   T  +++  + S     ET   L     A+
Sbjct: 273 VPYRDSKMTRILQDSLGGNCRTT-IVICCSPSSYNESETKSTLLFGQRAK 321

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-26
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 10/181 (5%)

Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK--V 204
            + +   I+ L  + VH+ +E Y++L  G +  + A T +N  SSRSH VFS+ +     
Sbjct: 172 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 231

Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
               EEL+ +   ++ DLAG+E   R+     R REA  IN SL  L R    L      
Sbjct: 232 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL------ 285

Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
             ++   +P+R+SKLT+I Q SL G + T  +I  ++ +    EET+  L+ +  A+++L
Sbjct: 286 -VERTPHVPYRESKLTRILQDSLGGRTRTS-IIATISPASLNLEETLSTLEYAHRAKNIL 343

Query: 325 T 325
            
Sbjct: 344 N 344

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 5e-05
 Identities = 16/51 (31%), Positives = 34/51 (66%)

Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
           Y F  ++G  T Q ++++++V  +L+  + G +  +F++G T +GKTFT++
Sbjct: 49  YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 99

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (261), Expect = 5e-25
 Identities = 58/281 (20%), Positives = 100/281 (35%), Gaps = 17/281 (6%)

Query: 47  SKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYR 106
                V    +K  I++ ++     S F        +   M       +           
Sbjct: 62  VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121

Query: 107 FSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFS----FGTTNSGKTFTIQDLTYVNV 162
                  +    +  + I  +  E Y      LL          N  K   ++DL  + V
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRV 181

Query: 163 HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDL 222
            + EE    +  G     +     N  SSRSH + +I L  ++    +   +      DL
Sbjct: 182 LTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGKIAFIDL 237

Query: 223 AGAERQKRAHTSGD-RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
           AG+ER     +       +   IN SL  L  C   +          K  IPFRDS+LT+
Sbjct: 238 AGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS-------DKNHIPFRDSELTK 290

Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARD 322
           + +    G S ++ MI N++ + +  E+T+  L+ SS  ++
Sbjct: 291 VLRDIFVGKSKSI-MIANISPTISCCEQTLNTLRYSSRVKN 330

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 75  ENVLEVLDQKSIMFKPMK---DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLER 131
            +++ V +  ++     +   DM   I      +    ++        +++N +  ++  
Sbjct: 21  SDIITVKNNCTLYIDEPRYKVDMTKYIERHE--FIVDKVFDDTVDNFTVYENTIKPLIID 78

Query: 132 -YLNGEDALLFSFGTTNSGKTFTIQDL 157
            Y NG     F++G T SGKT+T+   
Sbjct: 79  LYENGCVCSCFAYGQTGSGKTYTMLGS 105

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  105 bits (262), Expect = 6e-25
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 14/173 (8%)

Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
           +   +  L    V   ++  +++  G +  +   T  N  SSRSH  F I L        
Sbjct: 200 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---- 255

Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADK 268
              +   F + DLAG ER     ++  + R E   IN SL  L  C   L          
Sbjct: 256 --RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQN 306

Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
           K   PFR+SKLTQ+ + S  G +S   MI  ++   +  E T+  L+ +   +
Sbjct: 307 KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 359

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCN--LYRFSNIYGPHTTQAELFQNIVHNMLERY 132
            +V+ V  +  ++      +K  +T       + F   +    +   +++     +++  
Sbjct: 51  IDVISVPSKCLLLVHE-PKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 109

Query: 133 LNGEDALLFSFGTTNSGKTFTIQ 155
             G  A  F++G T SGKT T+ 
Sbjct: 110 FEGGKATCFAYGQTGSGKTHTMG 132

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  100 bits (250), Expect = 2e-23
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
           +   ++ L  + V S +E Y V+R G +  +VA T +N  SSRSH +F I + + +  + 
Sbjct: 164 RGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG 223

Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
                    + DLAG+E+  +   SG  L EA+ IN SL  L    N L +       K 
Sbjct: 224 S-AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KS 276

Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
             +P+RDSKLT+I Q SL G S T  +I+N + S     ET+  L+    A+ +   AK
Sbjct: 277 SHVPYRDSKLTRILQESLGGNSRTT-LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAK 334

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 14/121 (11%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 75  ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
           + ++      +      +            + F  ++     Q+++F   +   ++  LN
Sbjct: 26  QPIVTFQGPDTCTVDSKEAQGS--------FTFDRVFDMSCKQSDIFDFSIKPTVDDILN 77

Query: 135 GEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSH 194
           G +  +F++G T +GK++T+   +  +        R++    + +  +   + +    S+
Sbjct: 78  GYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSY 137

Query: 195 C 195
            
Sbjct: 138 M 138

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 93.4 bits (231), Expect = 7e-21
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 91  MKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGK 150
           +  +  ++    +  R     G        F  I + +L   L+ E   +      N+  
Sbjct: 149 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 208

Query: 151 TFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE 210
              + ++T   V        ++   K + + A T  N RSSRSH V  ++L+      +E
Sbjct: 209 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 268

Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
            I + S ++ DLAG+E  K +     R+ E + IN SL  L      L         K+ 
Sbjct: 269 -ISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILAL-------LQKQD 316

Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
            IP+R+SKLT +   SL G S T+ M +NV+      +E+V+ L+ ++   
Sbjct: 317 HIPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVKSLRFAASVN 366

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 88.9 bits (219), Expect = 2e-19
 Identities = 48/179 (26%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
              +++++T V++ + EE   +++ G        T +N +SSRSH + S+ +   +  ++
Sbjct: 158 GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQ 217

Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
            +         DLAG+ER K++ ++G++L+EA++IN SL  L    + L       +   
Sbjct: 218 AIARGK-LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL-------SSGN 269

Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
           + IP+R+ KLT +   SL G + T+ M VN++ + +  +ET   L  +S  R ++    
Sbjct: 270 QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLTYASRVRSIVNDPS 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	932
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.58
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.53
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.17
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	86.39
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.06
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	82.64
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	81.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	81.37
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.13
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.03
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	80.3

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=1e-58  Score=504.29  Aligned_cols=254  Identities=26%  Similarity=0.425  Sum_probs=225.6

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +||||+.+.|...+...++.+.++.++...+..       ...+.|.||+||+++++|.+||+. +.|+|+++++|+|+|
T Consensus         6 vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n~~   77 (364)
T d1sdma_           6 CRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD-------DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVC   77 (364)
T ss_dssp             EEECCCCHHHHHTTCCBCEEECSTTEEEEECSS-------SSEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEE
T ss_pred             EEcCCCChhhcccCCCCeEEeCCCCeEEecCCC-------CCceEEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCcee
Confidence            399999998866667778888888877665432       234589999999999999999987 589999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      |||||+|||||||||+|                                                               
T Consensus        78 i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~  157 (364)
T d1sdma_          78 IFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSK  157 (364)
T ss_dssp             EEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTT
T ss_pred             eeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeeccc
Confidence            99999999999999998                                                               


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+...+ ......|+|+|||||||||..
T Consensus       158 ~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-~~~~~~~kl~~vDLAGsEr~~  236 (364)
T d1sdma_         158 GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLSFVDLAGSERVK  236 (364)
T ss_dssp             SCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEEEEECCCCSCCC
T ss_pred             CccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccC-cceeeeEEEEeechhhccccc
Confidence                   788999999999999999999999999999999999999999999988665 345688999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      .+++.|.+++|+.+||+||++|++||.+|+.++       .|||||+||||+||+++|||++ +|+||+||+|+..+|++
T Consensus       237 ~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-------~~ipyR~SkLT~lL~d~Lggns-~t~~I~~isp~~~~~~e  308 (364)
T d1sdma_         237 KSGSAGNQLKEAQSINKSLSALGDVISALSSGN-------QHIPYRNHKLTMLMSDSLGGNA-KTLMFVNISPAESNLDE  308 (364)
T ss_dssp             C---------CCCTTCHHHHHHHHHHHHHHHTC-------SCCCGGGCHHHHHTTTTTTSSS-EEEEEEEECCBGGGHHH
T ss_pred             cccccCceeeeccccccchhhHHHHHHHHHcCC-------CcCCchhhhhhHHHHhhcCCCc-eEEEEEEeCCCcchHHH
Confidence            999999999999999999999999999999865       7999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCC
Q psy16994        310 TVQVLKISSVARDLLTVAKPR  330 (932)
Q Consensus       310 t~~~l~~~~~~~~i~~~~~~~  330 (932)
                      |++||+||++|+.|++.|.+|
T Consensus       309 Tl~TL~fa~~ak~i~n~p~~n  329 (364)
T d1sdma_         309 THNSLTYASRVRSIVNDPSKN  329 (364)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHHHhhcccCCccc
Confidence            999999999999999998875

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=2.4e-58  Score=500.27  Aligned_cols=258  Identities=24%  Similarity=0.335  Sum_probs=208.3

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc-cccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM-KCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN  127 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~  127 (932)
                      ++++.|+.    ||||+++.|...+...++.+.+...+.+.+|... ........+.|.||+||+++++|.+||+.++.|
T Consensus        29 ~~~I~V~v----RvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~p  104 (362)
T d1v8ka_          29 EHRICVCV----RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARP  104 (362)
T ss_dssp             CCCEEEEE----EECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHH
T ss_pred             CCCEEEEE----EeCCCChHHhhCCCceEEEECCCcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHH
Confidence            44566655    9999999997777788888888888888776521 111112234799999999999999999999999


Q ss_pred             HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994        128 MLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------  156 (932)
Q Consensus       128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------  156 (932)
                      +|+++++|+|+||||||||||||||||+|                                                   
T Consensus       105 lv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~D  184 (362)
T d1v8ka_         105 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFD  184 (362)
T ss_dssp             HHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEE
T ss_pred             HHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEe
Confidence            99999999999999999999999999988                                                   


Q ss_pred             ----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994        157 ----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM  214 (932)
Q Consensus       157 ----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~  214 (932)
                                            ++++.|.|+++++.++..|..+|.+++|.+|..|||||+||+|+|.+..      ...
T Consensus       185 LL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~~------~~~  258 (362)
T d1v8ka_         185 LLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG------RLH  258 (362)
T ss_dssp             TTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS------SEE
T ss_pred             cccCCccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEecc------eee
Confidence                                  8889999999999999999999999999999999999999999997532      356


Q ss_pred             EEEEEEeCCCCcccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhh-cCCCCC
Q psy16994        215 SSFDICDLAGAERQKRAHT-SGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS-LSGLSS  292 (932)
Q Consensus       215 s~l~~vDLagse~~~~~~~-~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~-l~g~~~  292 (932)
                      ++|+|||||||||..+++. .+.++.|+.+||+||++||+||.+|+.++       .|||||+||||+||+|+ +||++ 
T Consensus       259 ~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~-------~hiPyR~SkLT~lLkdsllGgns-  330 (362)
T d1v8ka_         259 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-------AHTPFRESKLTQVLRDSFIGENS-  330 (362)
T ss_dssp             EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------------CCCCHHHHHTTHHHHSSSE-
T ss_pred             eeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCC-------CcCCCccCHHHHhhhhccCCCCc-
Confidence            8999999999999987755 45788899999999999999999998754       89999999999999998 68888 


Q ss_pred             eeEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994        293 TVKMIVNVNASPAYAEETVQVLKISSVARDLL  324 (932)
Q Consensus       293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~  324 (932)
                      +|+||+||+|+..+++||++||+||++||+|.
T Consensus       331 ~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It  362 (362)
T d1v8ka_         331 RTCMIAMISPGISSCEYTLNTLRYADRVKELS  362 (362)
T ss_dssp             EEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999884

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=8.3e-58  Score=496.99  Aligned_cols=263  Identities=27%  Similarity=0.436  Sum_probs=242.5

Q ss_pred             hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHH
Q psy16994         49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM  128 (932)
Q Consensus        49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~  128 (932)
                      .+++.|+.    ||||+.+.|...+...++.+.++.++.+.++.        ....|.||+||+++++|.+||+.++.|+
T Consensus         4 ~~~I~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~--------~~~~f~FD~vf~~~~~q~~vy~~~~~pl   71 (354)
T d1goja_           4 ANSIKVVA----RFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE--------AQGSFTFDRVFDMSCKQSDIFDFSIKPT   71 (354)
T ss_dssp             SCBCEEEE----EECCCCHHHHTTTCCBCEEECSTTEEEECSTT--------CCEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred             CCCEEEEE----EcCCCChHHHhcCCceEEEEECCCeEEEcCCC--------CcceEECCeEcCCCCCHHHHHHHHHHHH
Confidence            34556665    99999999977777888889888888886543        2347999999999999999999999999


Q ss_pred             HHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------------
Q psy16994        129 LERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------  156 (932)
Q Consensus       129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------  156 (932)
                      |+++++|+|+||||||+|||||||||+|                                                    
T Consensus        72 v~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~  151 (354)
T d1goja_          72 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP  151 (354)
T ss_dssp             HHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST
T ss_pred             HHHhhccCceeEEecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccccCceEEEEeehhheecceEeecccc
Confidence            9999999999999999999999999998                                                    


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF  217 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l  217 (932)
                                         ++++.|.++++++.++..|..+|.+++|.+|..|||||+||+|+|.+.... ......|+|
T Consensus       152 ~~~~l~~~e~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-~~~~~~s~l  230 (354)
T d1goja_         152 QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-TGSAKSGQL  230 (354)
T ss_dssp             TCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-TTEEEEEEE
T ss_pred             cccceeeeeecCCCEeecCceeecchhHHHHHHHHhhcccccccccccccccccccceEEEEEEEEeecC-CCCeEEEEE
Confidence                               889999999999999999999999999999999999999999999998655 345678999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI  297 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i  297 (932)
                      +|||||||||..++++.|.++.|+..||+||++|++||.+|+.++      ..|||||+|+||+||+++|||++ +|+||
T Consensus       231 ~~vDLAGsE~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL~~~~------~~~iPyR~SkLT~lLkd~Lgg~s-~t~~I  303 (354)
T d1goja_         231 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK------SSHVPYRDSKLTRILQESLGGNS-RTTLI  303 (354)
T ss_dssp             EEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS------CSCCCGGGCHHHHHTGGGTTSSC-EEEEE
T ss_pred             EEeeccCcccccccCCccchhhhhhhhhHHHHHHHHHHHHHhcCC------CCcCCcccCHHHHHHHHhcCCCC-eEEEE
Confidence            999999999999999999999999999999999999999999863      47999999999999999999998 99999


Q ss_pred             EecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994        298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRH  331 (932)
Q Consensus       298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~  331 (932)
                      +||+|...+|.+|++||+||++|+.|++.|..|.
T Consensus       304 ~~isp~~~~~~eTl~TL~fa~~~~~i~~~~~~n~  337 (354)
T d1goja_         304 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA  337 (354)
T ss_dssp             EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCS
T ss_pred             EEECCCcccHHHHHHHHHHHHHHhccCccceEcC
Confidence            9999999999999999999999999999998874

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=5.6e-57  Score=489.25  Aligned_cols=256  Identities=30%  Similarity=0.491  Sum_probs=215.4

Q ss_pred             ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +||||+.+.|...+...|+.+.+ ...+.+.++...   .....+.|.||+||+++++|.+||+.++.|+|+.+++|+|+
T Consensus         6 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~   82 (345)
T d1x88a1           6 VRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLA---DKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNC   82 (345)
T ss_dssp             EEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEET---TEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             EEECCCChhhhccCCCeEEEEcCCCceEEEecCCCC---CCCCcceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccCCc
Confidence            39999999987667777887654 456666554311   11223479999999999999999999999999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      ||||||+|||||||||+|                                                              
T Consensus        83 ~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~  162 (345)
T d1x88a1          83 TIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVS  162 (345)
T ss_dssp             EEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCTTSCTT
T ss_pred             eEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHHHhhhccCceEEEEEEEEEEECCeeEECCCCCCccc
Confidence            999999999999999986                                                              


Q ss_pred             -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC--CCCCcceeEE
Q psy16994        157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD--PGSEELIMMS  215 (932)
Q Consensus       157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~--~~~~~~~~~s  215 (932)
                                         ++++.|.|++|++.+|..|..+|+++.|.+|..|||||+||+|+|....  .........|
T Consensus       163 ~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~~~~s  242 (345)
T d1x88a1         163 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIG  242 (345)
T ss_dssp             CCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             ccceeeecccCCCCEEEcCCEEEEeCCHHHHHHHHHhhhccccccccCccccccccceEEEEEEEEeeccCCCCCceEee
Confidence                               7889999999999999999999999999999999999999999998873  3334566789


Q ss_pred             EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994        216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK  295 (932)
Q Consensus       216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~  295 (932)
                      +|+|||||||||....+..|.++.|+..||+||++|++||.+|+.++       .|||||+||||+||+++|||++ +|+
T Consensus       243 ~l~~vDLAGsEr~~~~~~~~~~~~e~~~in~Sl~~L~~vi~al~~~~-------~~iPyR~SkLT~lL~d~Lgg~s-~t~  314 (345)
T d1x88a1         243 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-------PHVPYRESKLTRILQDSLGGRT-RTS  314 (345)
T ss_dssp             EEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTGGGSSSSS-EEE
T ss_pred             eEEEEecCCccccccccchhhhhcccccccchHHHHHHHHHHHhcCC-------CcCCCccCHHHHHhHHhcCCCC-cEE
Confidence            99999999999999999999999999999999999999999998754       8999999999999999999999 999


Q ss_pred             EEEecCCCcCcHHHHHHHHHHHHHhcccccc
Q psy16994        296 MIVNVNASPAYAEETVQVLKISSVARDLLTV  326 (932)
Q Consensus       296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~  326 (932)
                      ||+||+|...++.||++||+||++|++|+|+
T Consensus       315 ~i~~vsp~~~~~~eTl~tL~fa~~~~~I~nk  345 (345)
T d1x88a1         315 IIATISPASLNLEETLSTLEYAHRAKNILNK  345 (345)
T ss_dssp             EEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEEeCCchhhHHHHHHHHHHHHHhhhccCC
Confidence            9999999999999999999999999999874

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.1e-56  Score=479.67  Aligned_cols=251  Identities=22%  Similarity=0.350  Sum_probs=226.3

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCC-CccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhc-CCCC
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMK-DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYL-NGED  137 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~-~g~~  137 (932)
                      +||||+.+.|...+..+++.+.++.++.+.+|. ..........+.|.||+||+++++|.+||+.++.|+|.+++ +|+|
T Consensus         6 vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n   85 (330)
T d1ry6a_           6 VRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCV   85 (330)
T ss_dssp             EEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCE
T ss_pred             EEeCCCChHHHhcCCceEEEECCCcEEEEcCCccccccccCcCcceEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            499999999877677889999999999988776 22212222335899999999999999999999999999887 5999


Q ss_pred             ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994        138 ALLFSFGTTNSGKTFTIQD-------------------------------------------------------------  156 (932)
Q Consensus       138 ~~i~~~G~tgsGKt~t~~G-------------------------------------------------------------  156 (932)
                      +||||||+|||||||||+|                                                             
T Consensus        86 ~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~  165 (330)
T d1ry6a_          86 CSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE  165 (330)
T ss_dssp             EEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--------
T ss_pred             eEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhhhcccceEEEEEEEEeeecccccccccccccceeee
Confidence            9999999999999999987                                                             


Q ss_pred             ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994        157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE  226 (932)
Q Consensus       157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse  226 (932)
                                ++++.|.|+++++.++..|..+|.++.|.+|..|||||+||+|+|.....    ....|+|+||||||||
T Consensus       166 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~----~~~~s~l~~vDLAGsE  241 (330)
T d1ry6a_         166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK----NTSLGKIAFIDLAGSE  241 (330)
T ss_dssp             ---CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT----TEEEEEEEEEECCCTT
T ss_pred             cCCCCccccCceEEEEeeccchhhhhhcccccccccccccccccCCcceEEEEEEEeccc----ccccceeeeecccccc
Confidence                      88999999999999999999999999999999999999999999987653    3467999999999999


Q ss_pred             cccccccchhhh-HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcC
Q psy16994        227 RQKRAHTSGDRL-REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA  305 (932)
Q Consensus       227 ~~~~~~~~~~~~-~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~  305 (932)
                      |..++++.|... .|+..||+||++|++||.+|+.++       .|||||+||||+||+++|||++ +|+||+||+|...
T Consensus       242 r~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~al~~~~-------~~iPyR~SkLT~lL~d~lggns-~t~~I~~vsp~~~  313 (330)
T d1ry6a_         242 RGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-------NHIPFRDSELTKVLRDIFVGKS-KSIMIANISPTIS  313 (330)
T ss_dssp             GGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-------TSCCGGGCHHHHHTGGGGSSSC-EEEEEEEECCBGG
T ss_pred             cccccccCCchhhhhhhhhhHHHHHHHHHHHHHhcCC-------CcCCCccCHHHHHHHHhcCCCC-eEEEEEEECCchh
Confidence            999888877664 699999999999999999998754       8999999999999999999999 9999999999999


Q ss_pred             cHHHHHHHHHHHHHhcc
Q psy16994        306 YAEETVQVLKISSVARD  322 (932)
Q Consensus       306 ~~~et~~~l~~~~~~~~  322 (932)
                      ++.||++||+||++||.
T Consensus       314 ~~~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         314 CCEQTLNTLRYSSRVKN  330 (330)
T ss_dssp             GHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            99999999999999984

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=1e-55  Score=479.49  Aligned_cols=256  Identities=27%  Similarity=0.454  Sum_probs=215.7

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC--------CChHHHHHHHHHHHHHH
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH--------TTQAELFQNIVHNMLER  131 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~--------~~q~~v~~~~~~~~v~~  131 (932)
                      +||||+.+.|...+...++.+.+..++.+.|...     ....+.|.||+||++.        ++|.+||+.++.|+|+.
T Consensus         7 vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~   81 (349)
T d2zfia1           7 VRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP-----KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQH   81 (349)
T ss_dssp             EEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT-----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHH
T ss_pred             EEeCCCChhHhcCCCcEEEEECCCcEEEECCCCC-----CcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHH
Confidence            4999999988666667777776665554443321     1234589999999987        58999999999999999


Q ss_pred             hcCCCCceeeecccccCCCcEEEec-------------------------------------------------------
Q psy16994        132 YLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------------  156 (932)
Q Consensus       132 ~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------------  156 (932)
                      +++|+|+||||||+|||||||||+|                                                       
T Consensus        82 ~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~~~~  161 (349)
T d2zfia1          82 AFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG  161 (349)
T ss_dssp             HHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCS
T ss_pred             HHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCEEEecccccccC
Confidence            9999999999999999999999998                                                       


Q ss_pred             ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEE
Q psy16994        157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSF  217 (932)
Q Consensus       157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l  217 (932)
                                      ++++.|.++++++.+|..|..+|.++.|.+|..|||||+||+|.+.+....   .......|+|
T Consensus       162 ~~~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~s~l  241 (349)
T d2zfia1         162 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKI  241 (349)
T ss_dssp             CBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEE
T ss_pred             CceEEecCCCCcEEEEeEEEeccCHHHHHHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCCCcccceeeEE
Confidence                            889999999999999999999999999999999999999999999887322   2344567999


Q ss_pred             EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCCCccCCCCchHHhhhhhcCCCCC
Q psy16994        218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL-----KADKKKLIPFRDSKLTQIFQRSLSGLSS  292 (932)
Q Consensus       218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~-----~~~~~~~vp~r~s~LT~ll~~~l~g~~~  292 (932)
                      +|||||||||...+++.|.++.|+.+||+||++|++||.+|+..+..     ...+..|||||+||||+||+++|||++ 
T Consensus       242 ~~VDLAGsEr~~~~~~~g~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~s-  320 (349)
T d2zfia1         242 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNS-  320 (349)
T ss_dssp             EEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTC-
T ss_pred             EEeecccchhhhhcCCcccchhhccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCCc-
Confidence            99999999999999999999999999999999999999999976521     112457999999999999999999999 


Q ss_pred             eeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994        293 TVKMIVNVNASPAYAEETVQVLKISSVAR  321 (932)
Q Consensus       293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~  321 (932)
                      +|+||+||+|...+|.||++||+||++||
T Consensus       321 ~t~~I~~vsp~~~~~~eTl~TL~fa~rak  349 (349)
T d2zfia1         321 RTAMVAALSPADINYDETLSTLRYADRAK  349 (349)
T ss_dssp             EEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-56  Score=477.38  Aligned_cols=243  Identities=27%  Similarity=0.439  Sum_probs=226.2

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +||||+.+.|...+...++.+.+..++.+.            .+.|+||+||+++++|.+||+.++.|+|+++++|+|+|
T Consensus        11 vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~------------~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~   78 (323)
T d1bg2a_          11 CRFRPLNESEVNRGDKYIAKFQGEDTVVIA------------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT   78 (323)
T ss_dssp             EEECCCCHHHHHHTCCBCCEEETTTEEEET------------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred             EEeCCCChHHhccCCceEEEECCCCeEEEC------------CceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            399999998866666777788888777652            24799999999999999999999999999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      |||||+|||||||||+|                                                               
T Consensus        79 i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~~  158 (323)
T d1bg2a_          79 IFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKN  158 (323)
T ss_dssp             EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTT
T ss_pred             eeeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhccccccceEEEEEEEEEEcCcccccccccccceeEeeccc
Confidence            99999999999999998                                                               


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.|+++++.++..|..+|+++.|..|..|||||+||+|+|.+.+.. ......|+|+||||||||+..
T Consensus       159 ~~~~v~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~-~~~~~~s~l~~vDLAGse~~~  237 (323)
T d1bg2a_         159 RVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-TEQKLSGKLYLVDLAGSEKVS  237 (323)
T ss_dssp             SCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-TCCEEEEEEEEEECCCSCCCC
T ss_pred             cceeecCCEEEEEeccHhHhHHhhhcccceeecccCCCCCCCccceEEEEEEEEEeCC-CCcEEEEEEEEEecccccccc
Confidence                   888999999999999999999999999999999999999999999998655 345678999999999999999


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                      +++..+.++.|+..||+||++|++||.+|+.++       .|||||+||||+||+++|||++ +|+||+||+|...+++|
T Consensus       238 ~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-------~~iPyR~SkLT~lL~d~L~g~~-~t~~I~~isp~~~~~~e  309 (323)
T d1bg2a_         238 KTGAEGAVLDEAKNINKSLSALGNVISALAEGS-------TYVPYRDSKMTRILQDSLGGNC-RTTIVICCSPSSYNESE  309 (323)
T ss_dssp             CCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHGGGTSSSSC-EEEEEEEECCBGGGHHH
T ss_pred             cccchhhhhhhhhcccccHHHHHHHHHHHhcCC-------CccCCccCHHHHHHHHhcCCCc-cEEEEEEECCcchhHHH
Confidence            999999999999999999999999999999864       8999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy16994        310 TVQVLKISSVARDL  323 (932)
Q Consensus       310 t~~~l~~~~~~~~i  323 (932)
                      |++||+||++|++|
T Consensus       310 Tl~tL~fa~r~k~I  323 (323)
T d1bg2a_         310 TKSTLLFGQRAKTI  323 (323)
T ss_dssp             HHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999986

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=2e-55  Score=475.87  Aligned_cols=258  Identities=29%  Similarity=0.427  Sum_probs=206.9

Q ss_pred             ccccCCCcccccCCCCceEEEeCC-CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQ-KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA  138 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~  138 (932)
                      +||||+.+.+... ...++.+... ..+.+.++...........+.|.||+||+++++|.+||+. +.|+|+.+++|+|+
T Consensus         7 vRvRP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~-v~~~v~~~l~G~n~   84 (342)
T d1f9va_           7 CRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNV   84 (342)
T ss_dssp             EEECCCCTTTCCC-TTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCE
T ss_pred             EEeCcCCcccccC-CCceEEeeccCCcceeeeccccccCCCCCceEeecCeEeCCCCCHHHHHHH-hhhhhcchhccccc
Confidence            3999998776433 3344444321 1111111110011122334589999999999999999987 66999999999999


Q ss_pred             eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994        139 LLFSFGTTNSGKTFTIQD--------------------------------------------------------------  156 (932)
Q Consensus       139 ~i~~~G~tgsGKt~t~~G--------------------------------------------------------------  156 (932)
                      ||||||+|||||||||+|                                                              
T Consensus        85 ~i~aYGqtgSGKT~T~~G~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~~~~~~~~  164 (342)
T d1f9va_          85 CIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE  164 (342)
T ss_dssp             EEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CCC
T ss_pred             ceeeeeccCCccccccccCcCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCCCccccccccceee
Confidence            999999999999999998                                                              


Q ss_pred             --------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeC
Q psy16994        157 --------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDL  222 (932)
Q Consensus       157 --------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDL  222 (932)
                                    ++++.|.|+++++.++..|..+|.+++|.+|..|||||+||+|+|...+.. ......|+|+||||
T Consensus       165 ~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~-~~~~~~s~l~~vDL  243 (342)
T d1f9va_         165 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-TGAHSYGTLNLVDL  243 (342)
T ss_dssp             EEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC---CCEEEEEEEEEEC
T ss_pred             eeecCCCCcEEEeeeEEEEecchHHHHHHHhhhhhccccccccccccCcccceeEEEEEEEecCC-ccceeeeeeeeeec
Confidence                          678999999999999999999999999999999999999999999988654 34567899999999


Q ss_pred             CCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCC
Q psy16994        223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNA  302 (932)
Q Consensus       223 agse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p  302 (932)
                      |||||...++..+.+++|+..||+||++|++||.+|+.++.    ...|||||+||||+||+++|||++ +|+||+||+|
T Consensus       244 AGse~~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~aL~~~~~----~~~~iPyR~SkLT~lL~d~lgg~s-~t~~I~~vsp  318 (342)
T d1f9va_         244 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----TKRHIPFRNSKLTYLLQYSLTGDS-KTLMFVNISP  318 (342)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CCCCGGGSHHHHHHHHHHSTTC-EEEEEEEECC
T ss_pred             cCCcccccccchhhhhhhhhhccHHHHHHHHHHHHHhcccC----CCCcCCCccCHHHHHHHHhcCCCc-eEEEEEEECC
Confidence            99999999999999999999999999999999999997653    347999999999999999999998 9999999999


Q ss_pred             CcCcHHHHHHHHHHHHHhccccc
Q psy16994        303 SPAYAEETVQVLKISSVARDLLT  325 (932)
Q Consensus       303 ~~~~~~et~~~l~~~~~~~~i~~  325 (932)
                      ...+|+||++||+||++|++|+.
T Consensus       319 ~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         319 SSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             SGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             chhhHHHHHHHHHHHHHhhccee
Confidence            99999999999999999999874

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=8.7e-54  Score=465.99  Aligned_cols=248  Identities=26%  Similarity=0.405  Sum_probs=210.6

Q ss_pred             ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994         60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL  139 (932)
Q Consensus        60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~  139 (932)
                      +||||+.+.|.... ..++...+..++.+.++... .........|.||+||+++++|.+||+. +.|+|+++++|+|+|
T Consensus        51 vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~-v~plv~~vl~G~n~t  127 (368)
T d2ncda_          51 CRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQ-AKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNIC  127 (368)
T ss_dssp             EEECCCCGGGTTSC-BCEEEEETTTEEEEECSCHH-HHTTTCCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCEEE
T ss_pred             EEeCCCCchhcCCC-CcEEEeCCCCeEEEccCCcc-ccCCcCceeeECCeEECCCCCccchHHH-HHHHHHHHhccccee
Confidence            39999999885433 33455567777777765521 1122334589999999999999999975 679999999999999


Q ss_pred             eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994        140 LFSFGTTNSGKTFTIQD---------------------------------------------------------------  156 (932)
Q Consensus       140 i~~~G~tgsGKt~t~~G---------------------------------------------------------------  156 (932)
                      |||||+|||||||||+|                                                               
T Consensus       128 i~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~  207 (368)
T d2ncda_         128 IFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNK  207 (368)
T ss_dssp             EEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCT
T ss_pred             EEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeecccccccccccceeecccc
Confidence            99999999999999998                                                               


Q ss_pred             -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994        157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK  229 (932)
Q Consensus       157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~  229 (932)
                             ++++.|.+++++..++..|..+|..+.|.+|..|||||+||+|+|.+.... ......|+|+||||||+|+..
T Consensus       208 ~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~-~~~~~~s~l~~VDLAGse~~~  286 (368)
T d2ncda_         208 NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-KQEISVGSINLVDLAGSESPK  286 (368)
T ss_dssp             TCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTT-SCCEEEEEEEEEECCCCCCC-
T ss_pred             ccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecC-CCceEeeeeeeeeeccccccc
Confidence                   888999999999999999999999999999999999999999999998665 345688999999999999865


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994        230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE  309 (932)
Q Consensus       230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e  309 (932)
                          .+.++.|+.+||+||++|++||.+|+.++       .|||||+||||+||+|+|||++ +|+||+||+|+..+|++
T Consensus       287 ----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~-------~~iPyR~SkLT~lL~dsLggns-~t~mI~~isp~~~~~~e  354 (368)
T d2ncda_         287 ----TSTRMTETKNINRSLSELTNVILALLQKQ-------DHIPYRNSKLTHLLMPSLGGNS-KTLMFINVSPFQDCFQE  354 (368)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHHGGGSSSSC-EEEEEEEECCBGGGHHH
T ss_pred             ----hhhhhcccccchhhHHHHHHHHHHHhcCC-------CCCCCcCCHHHHHHHHhcCCCC-eEEEEEEECCChhhHHH
Confidence                35689999999999999999999999864       7999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy16994        310 TVQVLKISSVARDL  323 (932)
Q Consensus       310 t~~~l~~~~~~~~i  323 (932)
                      |++||+||++|+++
T Consensus       355 Tl~TL~fa~rak~~  368 (368)
T d2ncda_         355 SVKSLRFAASVNSC  368 (368)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999863

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.58  E-value=0.015  Score=55.23  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      .|+||..|. ..++...|.. +..+++..-.++| .++-||++|+||||.+.+
T Consensus         6 ~~tFdnF~v-g~~N~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKTHLl~A   55 (213)
T d1l8qa2           6 KYTLENFIV-GEGNRLAYEV-VKEALENLGSLYN-PIFIYGSVGTGKTHLLQA   55 (213)
T ss_dssp             TCCSSSCCC-CTTTHHHHHH-HHHHHHTTTTSCS-SEEEECSSSSSHHHHHHH
T ss_pred             CCChhhccC-CCcHHHHHHH-HHHHHhCcCCCCC-cEEEECCCCCcHHHHHHH
Confidence            488987664 3445555544 4455554333344 588999999999996654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.53  E-value=0.071  Score=60.73  Aligned_cols=68  Identities=22%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             CCCCceeeecccccCCCcEEEec----c--------------eEEEecCHHHHHHHHHhhhhccccccccCccCCCCCcc
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----L--------------TYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHC  195 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l--------------~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~  195 (932)
                      .|.|-||+..|.+|||||.+..-    |              ..-...+.++-+.-....+..--.+.|..|..|||---
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGk  197 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGK  197 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEE
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHhHHHHhccccCCCCCCccCCcce
Confidence            68999999999999999975321    0              01112233332221122222334577999999999877


Q ss_pred             EEEEEE
Q psy16994        196 VFSIKL  201 (932)
Q Consensus       196 i~~i~v  201 (932)
                      ++.|++
T Consensus       198 ~~~l~f  203 (789)
T d1kk8a2         198 FIRIHF  203 (789)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            877776

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.17  E-value=0.026  Score=52.92  Aligned_cols=19  Identities=21%  Similarity=0.330  Sum_probs=10.7

Q ss_pred             CceeeecccccCCCcEEEe
Q psy16994        137 DALLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       137 ~~~i~~~G~tgsGKt~t~~  155 (932)
                      ...|+-.|+||+|||+|+.
T Consensus        12 p~vi~lvGptGvGKTTTiA   30 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAG   30 (211)
T ss_dssp             SEEEEEECSCCC----HHH
T ss_pred             CEEEEEECCCCCCHHHHHH
Confidence            3456667999999999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=0.053  Score=53.20  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHH-HhcC--C--CCceeeecccccCCCcEEE
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLN--G--EDALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~--g--~~~~i~~~G~tgsGKt~t~  154 (932)
                      .++|+.|.+.+..-..+++.+..|+.. ..+.  |  +...|+-||++|+|||+.+
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            378999999888888888887766653 2221  3  3567999999999999854

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.39  E-value=0.08  Score=52.32  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhcCCCCc-----eeeecccccCCCcEEEe
Q psy16994        121 FQNIVHNMLERYLNGEDA-----LLFSFGTTNSGKTFTIQ  155 (932)
Q Consensus       121 ~~~~~~~~v~~~~~g~~~-----~i~~~G~tgsGKt~t~~  155 (932)
                      ++.+..-+...+.+|...     +++.||++|+|||+++.
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~   64 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK   64 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHH
Confidence            344333344555555432     46778999999998553

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.06  E-value=0.28  Score=55.64  Aligned_cols=69  Identities=19%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             CCCCceeeecccccCCCcEEEec----ce--------------EEEecCHHHHHHHHHhhhhccccccccCccCCCCCcc
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LT--------------YVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHC  195 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~--------------~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~  195 (932)
                      .|.|-||+..|.+|||||.+..-    |.              .-...+.++-..-....+..--.+.|..|..|||---
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~~~~~~~~~~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk  199 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGK  199 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHHHHTCCCC-----------CCHHHHHHHHHHHHHHHHEECCSSCSSEECSEE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccccCcHHHHHHHhhhHHHHhcCCcccccCChhhhhe
Confidence            68999999999999999964322    10              1112233332221111122223467899999999766


Q ss_pred             EEEEEEE
Q psy16994        196 VFSIKLV  202 (932)
Q Consensus       196 i~~i~v~  202 (932)
                      ++.|+..
T Consensus       200 ~~~l~f~  206 (794)
T d2mysa2         200 FIRIHFG  206 (794)
T ss_dssp             EEEEEEC
T ss_pred             eeeeEEC
Confidence            6666663

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.73  E-value=0.72  Score=51.22  Aligned_cols=69  Identities=20%  Similarity=0.137  Sum_probs=41.4

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEEE---ecC---HHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN---VHS---CEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV  202 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~---v~s---~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~  202 (932)
                      .+.|-||+..|.+|||||.+..-    |..+.   -.+   .++-+.-.......--.+.|..|..|||.--++.|++.
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~s~~~~~~~~~i~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~f~  161 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFN  161 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEEC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccchHHHHHHhhhhhhhhcccccccCCCCcCceeeEEEEEec
Confidence            58899999999999999985433    11000   000   11111000111112234779999999998888888773

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=82.64  E-value=0.11  Score=54.10  Aligned_cols=30  Identities=23%  Similarity=0.431  Sum_probs=25.6

Q ss_pred             HHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994        127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD  156 (932)
Q Consensus       127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G  156 (932)
                      ..+..++...++.|+.-|+||||||+||..
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl~~  177 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTLYA  177 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHHHH
Confidence            445677888999999999999999998765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=81.76  E-value=0.11  Score=50.25  Aligned_cols=50  Identities=18%  Similarity=0.279  Sum_probs=30.4

Q ss_pred             ceecceecCCCCChHHHHHHHHHHHHH-Hhc----CCCCceeeecccccCCCcEEE
Q psy16994        104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYL----NGEDALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~----~g~~~~i~~~G~tgsGKt~t~  154 (932)
                      ..+|+.|++.+..-.++-+ .+..+-. ..+    -.....|+-|||+|+|||+++
T Consensus         8 ~~t~~Di~Gl~~~k~~l~e-~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_           8 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred             CCCHHHHhchHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHH
Confidence            4678999987655444432 2222111 111    223567899999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.37  E-value=0.32  Score=47.39  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             HHHHHHHhcCCCCc-----eeeecccccCCCcEE
Q psy16994        125 VHNMLERYLNGEDA-----LLFSFGTTNSGKTFT  153 (932)
Q Consensus       125 ~~~~v~~~~~g~~~-----~i~~~G~tgsGKt~t  153 (932)
                      +...+..++.|...     .|+.||++|+|||++
T Consensus        15 ~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~l   48 (273)
T d1gvnb_          15 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL   48 (273)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred             HHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHH
Confidence            34444555555443     488999999999983

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.13  E-value=0.42  Score=53.34  Aligned_cols=69  Identities=23%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             CCCCceeeecccccCCCcEEEec----ceEE------E-ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----LTYV------N-VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV  202 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~------~-v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~  202 (932)
                      .|.|-||+.-|.+|||||.+..-    |..+      . -...++-+.-....+..--.+.|..|..|||---++.|.+.
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL~~~s~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~f~  201 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFN  201 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEEC
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhCCCcccccchHHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEEEEEc
Confidence            58999999999999999985432    1100      0 01122211111111222234678899999997777777663

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.03  E-value=0.33  Score=54.37  Aligned_cols=69  Identities=22%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CCCCceeeecccccCCCcEEEec----c------e------------EEEecCHHHHHHHHHhhhhccccccccCccCCC
Q psy16994        134 NGEDALLFSFGTTNSGKTFTIQD----L------T------------YVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSS  191 (932)
Q Consensus       134 ~g~~~~i~~~G~tgsGKt~t~~G----l------~------------~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ss  191 (932)
                      .|.|-||+..|.+|||||.+..-    |      .            .....+.++-+.-....+..--.+.|..|..||
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT~~N~NSS  167 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSS  167 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC------------------CHHHHHHTTHHHHHHHHHEECCSSCTTEE
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCccccccccccccccchHHHHHHHHHHHHHHhCCCccCCCCCCC
Confidence            58999999999999999986322    0      0            001111222111111111222346789999999


Q ss_pred             CCccEEEEEEE
Q psy16994        192 RSHCVFSIKLV  202 (932)
Q Consensus       192 rsh~i~~i~v~  202 (932)
                      |---++.|++.
T Consensus       168 Rfgk~~~l~f~  178 (710)
T d1br2a2         168 RFGKFIRINFD  178 (710)
T ss_dssp             SSEEEEEEEEC
T ss_pred             CcceeeeeEEc
Confidence            98888888773

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=80.30  E-value=0.24  Score=47.60  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             eecceecCCCCChHHHHHHHHHHHHHHhcCCCC---ceeeecccccCCCcEEE
Q psy16994        105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGED---ALLFSFGTTNSGKTFTI  154 (932)
Q Consensus       105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~---~~i~~~G~tgsGKt~t~  154 (932)
                      |-.+.+++....-..|.+. +..+++.+..+.+   ..|+-||++|+|||+..
T Consensus         6 ~~~~~~i~~~~~i~~i~~~-~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la   57 (246)
T d1d2na_           6 YIMNGIIKWGDPVTRVLDD-GELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA   57 (246)
T ss_dssp             TCTTCCCCCSHHHHHHHHH-HHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred             hhccCCcCcCHHHHHHHHH-HHHHHHHHhccCCCCCeEEEEECcCCCCHHHHH
Confidence            3345554433333344444 4455655544433   46889999999999843