Psyllid ID: psy16997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccEEEEEcccccEEEEEEcccEEEEEEcccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEccccEEEEEEcccEEEEEEEcc
Coil and Loop (DISEMBL)
madtevvsREEEKKIVhtyplvhktdmADELMTEVVDLCSMACEKHAANLEQASRVIKDTmdkkygpawHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Flexible Loop (DISEMBL)
madtevvsreeekkivhtyplvhktdMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Low Complexity Region (SEG)
MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Disordered region (IsUnstruct)
**************IVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKC*
Disordered Region (DISOPRED)
******************YPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Disordered Region (DISEMBL)
************KKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Disordered Region (DISPRO)
********REEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9DCM4	105	Dynein light chain 4, axo	yes	N/A	1.0	1.0	0.542	2e-30
A4F4L4	105	Dynein light chain 4, axo	yes	N/A	1.0	1.0	0.542	3e-30
O96015	105	Dynein light chain 4, axo	yes	N/A	1.0	1.0	0.542	3e-30
Q32KN5	105	Dynein light chain 4, axo	yes	N/A	1.0	1.0	0.542	3e-30
Q6FUJ0	86	Dynein light chain 1, cyt	yes	N/A	0.780	0.953	0.404	6e-11
Q22799	89	Dynein light chain 1, cyt	yes	N/A	0.780	0.921	0.360	3e-10
O96860	89	Dynein light chain 2, cyt	no	N/A	0.761	0.898	0.369	4e-10
Q24117	89	Dynein light chain 1, cyt	no	N/A	0.761	0.898	0.369	5e-10
Q78P75	89	Dynein light chain 2, cyt	no	N/A	0.761	0.898	0.369	9e-10
Q9D0M5	89	Dynein light chain 2, cyt	no	N/A	0.761	0.898	0.369	9e-10

>sp|Q9DCM4|DNAL4_MOUSE Dynein light chain 4, axonemal OS=Mus musculus GN=Dnal4 PE=2 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct: 1   MGETEGKKEEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct: 61  MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity.
Mus musculus (taxid: 10090)

>sp|A4F4L4|DNAL4_PIG Dynein light chain 4, axonemal OS=Sus scrofa GN=DNAL4 PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct: 1   MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct: 61  MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity.

Sus scrofa (taxid: 9823)

>sp|O96015|DNAL4_HUMAN Dynein light chain 4, axonemal OS=Homo sapiens GN=DNAL4 PE=2 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct: 1   MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct: 61  MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q32KN5|DNAL4_BOVIN Dynein light chain 4, axonemal OS=Bos taurus GN=DNAL4 PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct: 1   MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct: 61  MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q6FUJ0|DYL1_CANGA Dynein light chain 1, cytoplasmic OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DYN2 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
           +V  +DM DE+  EV  +   A  +H    E AS VIK  MD +YG  WHV+VG +FG  
Sbjct: 5   IVKASDMGDEMQQEVFRIAEEAMREHTLEREIAS-VIKKEMDSRYGHTWHVIVGRSFGSY 63

Query: 81  ITYECKSLLYMFFGGNLAICMWKC 104
           +T+E    +Y F+ G LA+ ++K 
Sbjct: 64  VTHEKGKFVY-FYVGPLALLVFKT 86

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM+D++  + +D  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSDDMQQDAIDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 80  EITYECKSLLYMFFGGNLAICMWKCS 105
            +T+E K  +Y F+ G +AI ++K  
Sbjct: 65  YVTHETKHFIY-FYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++E+  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E +  +Y F+ G +AI ++K
Sbjct: 65  YVTHETRHFIY-FYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++E+  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E +  +Y F+ G +AI ++K
Sbjct: 65  YVTHETRHFIY-FYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E K  +Y F+ G +AI ++K
Sbjct: 65  YVTHETKHFIY-FYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E K  +Y F+ G +AI ++K
Sbjct: 65  YVTHETKHFIY-FYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
405965119	105	Dynein light chain 4, axonemal [Crassost	1.0	1.0	0.6	2e-32
194753321	105	GF12295 [Drosophila ananassae] gi|190620	1.0	1.0	0.590	9e-32
91093709	105	PREDICTED: similar to dynein light chain	0.990	0.990	0.609	9e-32
443732171	107	hypothetical protein CAPTEDRAFT_157041 [	0.914	0.897	0.614	3e-31
195333616	104	GM21336 [Drosophila sechellia] gi|195551	0.990	1.0	0.590	5e-31
327272503	106	PREDICTED: dynein light chain 4, axonema	1.0	0.990	0.584	7e-31
24652892	104	CG8407, isoform A [Drosophila melanogast	0.990	1.0	0.580	1e-30
195384535	104	GJ19905 [Drosophila virilis] gi|19414576	0.990	1.0	0.590	2e-30
387015640	106	Dynein light chain 4, axonemal [Crotalus	1.0	0.990	0.575	2e-30
449271914	106	Dynein light chain 4, axonemal [Columba	1.0	0.990	0.575	3e-30

>gi|405965119|gb|EKC30534.1| Dynein light chain 4, axonemal [Crassostrea gigas]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 83/105 (79%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           MA+ E   +E + K VHTYPL+  +DM DE+ TE ++LC  ACEK ++N E A+R+IK+T
Sbjct: 1   MAEQEEQKKEPDSKRVHTYPLIRHSDMNDEMKTEAMELCVTACEKFSSNNENAARMIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G +WH VVGE +GFEIT+E K+LLYMFFGGN+AI +WKCS
Sbjct: 61  MDKKFGASWHAVVGEGYGFEITHEVKNLLYMFFGGNMAIIVWKCS 105

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|194753321|ref|XP_001958962.1| GF12295 [Drosophila ananassae] gi|190620260|gb|EDV35784.1| GF12295 [Drosophila ananassae]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 82/105 (78%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           M D     +E EKKIVH YPLV  +DM +E+ TE ++L  MACEK+++N E A++VIK+T
Sbjct: 1   MGDEPEGGKEGEKKIVHVYPLVKHSDMNEEMRTEAIELTIMACEKYSSNYEHAAKVIKET 60

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G  WHVVVGE FGFE++YE +++LY+FF GNLAI +WKCS
Sbjct: 61  MDKKFGIYWHVVVGEGFGFEVSYETQNILYLFFAGNLAIVLWKCS 105

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093709|ref|XP_967210.1| PREDICTED: similar to dynein light chain 4, axonemal [Tribolium castaneum] gi|270013000|gb|EFA09448.1| hypothetical protein TcasGA2_TC010663 [Tribolium castaneum]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 1   MADTEVVSREEE-KKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
           M D E   + EE KKIVHTYPL+  +DM +E+  E ++L   ACEKH+ N E A+R+IK+
Sbjct: 1   MGDGEGREKPEETKKIVHTYPLIRHSDMPEEMKQESMELVVTACEKHSTNNEAAARMIKE 60

Query: 60  TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
            MDKK+GP +HVVVGE FGFEI++EC++LLYMFFGGNLAI +WKC
Sbjct: 61  EMDKKFGPPFHVVVGEGFGFEISFECQNLLYMFFGGNLAIVIWKC 105

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443732171|gb|ELU16999.1| hypothetical protein CAPTEDRAFT_157041 [Capitella teleta]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 80/96 (83%)

Query: 10  EEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAW 69
           +E K++VHTYPL+  +DMA+E+  E ++LC  ACEK ++N E A+++IK+TMDKK+G +W
Sbjct: 12  QETKRVVHTYPLIRHSDMAEEMRVEAMELCVTACEKFSSNNEVAAKMIKETMDKKFGASW 71

Query: 70  HVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           HVVVGE FGFEIT+E K+LLYMFF G +AIC+WKCS
Sbjct: 72  HVVVGEGFGFEITHEVKNLLYMFFAGTMAICLWKCS 107

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|195333616|ref|XP_002033486.1| GM21336 [Drosophila sechellia] gi|195551827|ref|XP_002076302.1| GD15397 [Drosophila simulans] gi|195551834|ref|XP_002076305.1| GD15399 [Drosophila simulans] gi|194125456|gb|EDW47499.1| GM21336 [Drosophila sechellia] gi|194201951|gb|EDX15527.1| GD15397 [Drosophila simulans] gi|194201954|gb|EDX15530.1| GD15399 [Drosophila simulans]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 1/105 (0%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           MAD E   +E EKKIVH YPLV  TDM +E+  E ++L   ACEK+++N E A+R+IK+ 
Sbjct: 1   MADEEA-GKEGEKKIVHVYPLVKHTDMNEEMRIEAIELSITACEKYSSNYEHAARIIKEN 59

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G  WHVVVGE FGFE++YE +++LY+FF GNLAI +WKCS
Sbjct: 60  MDKKFGIYWHVVVGEGFGFEVSYETENILYLFFAGNLAIVLWKCS 104

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327272503|ref|XP_003221024.1| PREDICTED: dynein light chain 4, axonemal-like [Anolis carolinensis]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 1   MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
           MADT    +EE + K +H++PL+  TDM +E+  E ++LC  ACEK+A N E A+++IK+
Sbjct: 1   MADTGDGKKEEADYKRLHSFPLIRHTDMPEEMRVEAMELCVTACEKYATNNESAAKMIKE 60

Query: 60  TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           TMDKKYG +WHVV+GE FGFEIT+E K+LLYMFFGG+LA+C+W+CS
Sbjct: 61  TMDKKYGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAVCVWRCS 106

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|24652892|ref|NP_610734.1| CG8407, isoform A [Drosophila melanogaster] gi|281363199|ref|NP_001163124.1| CG8407, isoform B [Drosophila melanogaster] gi|7303519|gb|AAF58574.1| CG8407, isoform A [Drosophila melanogaster] gi|219990683|gb|ACL68715.1| IP07569p [Drosophila melanogaster] gi|272432444|gb|ACZ94399.1| CG8407, isoform B [Drosophila melanogaster]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 81/105 (77%), Gaps = 1/105 (0%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           MAD E   +E EKKIVH YPLV  TDM +E+  E ++L   ACEK+++N E A+++IK+ 
Sbjct: 1   MADEEA-GKEGEKKIVHVYPLVKHTDMNEEMRIEAIELSITACEKYSSNYEHAAKIIKEN 59

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G  WHVVVGE FGFE++YE +++LY+FF GNLAI +WKCS
Sbjct: 60  MDKKFGIYWHVVVGEGFGFEVSYETENILYLFFAGNLAIVLWKCS 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195384535|ref|XP_002050970.1| GJ19905 [Drosophila virilis] gi|194145767|gb|EDW62163.1| GJ19905 [Drosophila virilis]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 1   MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
           MAD E   +E +KKIVHTYPLV  TDM +E+  EV+DL    CEK+++N E A++ IK+T
Sbjct: 1   MADDEG-GKEGDKKIVHTYPLVKHTDMKEEMRQEVIDLSVSVCEKYSSNYELAAKTIKET 59

Query: 61  MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           MDKK+G  WHVVVGE FGFE++YE +++LY+FF GNLA+ +WKCS
Sbjct: 60  MDKKFGIYWHVVVGEGFGFEVSYETENILYLFFAGNLAVVLWKCS 104

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387015640|gb|AFJ49939.1| Dynein light chain 4, axonemal [Crotalus adamanteus]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 1   MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
           MADT    +EE + K +H++PL+  +DM +E+  E ++LC  ACEK+A N E A+++IK+
Sbjct: 1   MADTGEGKKEEADYKRLHSFPLIRHSDMPEEMRVEAMELCVTACEKYATNNESAAKMIKE 60

Query: 60  TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
           TMDKK+G +WHVV+GE FGFEIT+E K+LLYMFFGG+LA+C+WKCS
Sbjct: 61  TMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAVCVWKCS 106

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449271914|gb|EMC82088.1| Dynein light chain 4, axonemal [Columba livia]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 84/106 (79%), Gaps = 1/106 (0%)

Query: 1   MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
           MADT    +EE + K +H++PL+  TDM +E+  E ++LC  ACEK+A N E A+++IK+
Sbjct: 1   MADTGEGKKEESDYKRLHSFPLIRHTDMPEEMRVEAMELCVTACEKYATNNESAAKMIKE 60

Query: 60  TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
            MDKK+G +WHVV+GE FGFEIT+E K+LLYMFFGG+LA+C+WKCS
Sbjct: 61  MMDKKFGSSWHVVIGEAFGFEITHEVKNLLYMFFGGSLAVCVWKCS 106

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|Q5ZHX2	106	DNAL4 "Uncharacterized protein	1.0	0.990	0.575	9.8e-32
ZFIN|ZDB-GENE-050208-510	106	dnal4b "dynein, axonemal, ligh	1.0	0.990	0.575	2e-31
FB|FBgn0033687	104	CG8407 [Drosophila melanogaste	0.990	1.0	0.580	5.4e-31
UNIPROTKB|E2RL64	105	DNAL4 "Uncharacterized protein	1.0	1.0	0.542	4.9e-30
MGI|MGI:1859217	105	Dnalc4 "dynein, axonemal, ligh	1.0	1.0	0.542	4.9e-30
UNIPROTKB|Q32KN5	105	DNAL4 "Dynein light chain 4, a	1.0	1.0	0.542	7.9e-30
UNIPROTKB|O96015	105	DNAL4 "Dynein light chain 4, a	1.0	1.0	0.542	7.9e-30
UNIPROTKB|A4F4L4	105	DNAL4 "Dynein light chain 4, a	1.0	1.0	0.542	7.9e-30
ZFIN|ZDB-GENE-040801-122	106	dnal4a "dynein, axonemal, ligh	1.0	0.990	0.528	1.3e-29
WB|WBGene00001005	89	dlc-1 [Caenorhabditis elegans	0.761	0.898	0.369	3.9e-12

UNIPROTKB|Q5ZHX2 DNAL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 61/106 (57%), Positives = 84/106 (79%)

Query:     1 MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
             MADT    +EE + K +H++PL+  TDM +E+  E ++LC  ACEK+A N E A+++IK+
Sbjct:     1 MADTGEGKKEEADYKRLHSFPLIRHTDMPEEMRVEAMELCVTACEKYATNNESAAKMIKE 60

Query:    60 TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
              MDKK+G +WHVV+GE FGFEIT+E K+LLYMFFGG+LA+C+WKCS
Sbjct:    61 MMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAVCVWKCS 106

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-050208-510 dnal4b "dynein, axonemal, light chain 4b" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 61/106 (57%), Positives = 83/106 (78%)

Query:     1 MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
             MADT    +EE + K +H +PL+  TDM +E+  E ++LC  ACEK A N E A+++IK+
Sbjct:     1 MADTVDGKKEEADYKRLHNFPLIRHTDMPEEMRVETMELCVTACEKFATNNESAAKMIKE 60

Query:    60 TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             +MDKK+G +WHVV+GE FGFEIT+E K+LLYMFFGG+LA+C+WKCS
Sbjct:    61 SMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAVCVWKCS 106

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0033687 CG8407 [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 61/105 (58%), Positives = 81/105 (77%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             MAD E   +E EKKIVH YPLV  TDM +E+  E ++L   ACEK+++N E A+++IK+ 
Sbjct:     1 MADEEA-GKEGEKKIVHVYPLVKHTDMNEEMRIEAIELSITACEKYSSNYEHAAKIIKEN 59

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G  WHVVVGE FGFE++YE +++LY+FF GNLAI +WKCS
Sbjct:    60 MDKKFGIYWHVVVGEGFGFEVSYETENILYLFFAGNLAIVLWKCS 104

GO:0030286 "dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|E2RL64 DNAL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct:     1 MGETEGKKEEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct:    61 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

MGI|MGI:1859217 Dnalc4 "dynein, axonemal, light chain 4" [Mus musculus (taxid:10090)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct:     1 MGETEGKKEEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct:    61 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

GO:0003774 "motor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q32KN5 DNAL4 "Dynein light chain 4, axonemal" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct:     1 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct:    61 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

GO:0035085 "cilium axoneme" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|O96015 DNAL4 "Dynein light chain 4, axonemal" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct:     1 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct:    61 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

GO:0005874 "microtubule" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0042623 "ATPase activity, coupled" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

UNIPROTKB|A4F4L4 DNAL4 "Dynein light chain 4, axonemal" [Sus scrofa (taxid:9823)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 57/105 (54%), Positives = 80/105 (76%)

Query:     1 MADTEVVSREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT 60
             M +TE    E + K + T+PLV  +DM +E+  E ++LC  ACEK + N E A+++IK+T
Sbjct:     1 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 60

Query:    61 MDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             MDKK+G +WHVV+GE FGFEIT+E K+LLY++FGG LA+C+WKCS
Sbjct:    61 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105

GO:0035085 "cilium axoneme" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-040801-122 dnal4a "dynein, axonemal, light chain 4a" [Danio rerio (taxid:7955)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 56/106 (52%), Positives = 84/106 (79%)

Query:     1 MADTEVVSREE-EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKD 59
             MA+T    +E+ + K + ++PL+  TDM +E+  E ++LC  ACEK A+N E A+++IK+
Sbjct:     1 MAETGDGKKEDADYKRLQSFPLIRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKE 60

Query:    60 TMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKCS 105
             +MDKK+G +WHVV+GE FGFE+T+E ++LLYMFFGG+LA+C+WKCS
Sbjct:    61 SMDKKFGSSWHVVIGEGFGFEVTHEVRNLLYMFFGGSLAVCVWKCS 106

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

WB|WBGene00001005 dlc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query:    21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
             ++   DM+D++  + +D  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct:     7 VIKNADMSDDMQQDAIDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query:    80 EITYECKSLLYMFFGGNLAICMWK 103
              +T+E K  +Y F+ G +AI ++K
Sbjct:    65 YVTHETKHFIY-FYLGQVAILLFK 87

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.3604	0.7809	0.9213	yes	N/A
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.4047	0.7809	0.9534	yes	N/A
Q9UR05	DYL1_SCHPO	No assigned EC number	0.3058	0.7904	0.9764	yes	N/A
Q9DCM4	DNAL4_MOUSE	No assigned EC number	0.5428	1.0	1.0	yes	N/A
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.3023	0.8	0.9230	yes	N/A
Q86A88	DYL_DICDI	No assigned EC number	0.3521	0.6476	0.7472	yes	N/A
O94111	DYL1_EMENI	No assigned EC number	0.3452	0.7809	0.8723	yes	N/A
Q6CWX4	DYL1_KLULA	No assigned EC number	0.3488	0.8	0.9655	yes	N/A
Q32KN5	DNAL4_BOVIN	No assigned EC number	0.5428	1.0	1.0	yes	N/A
O96015	DNAL4_HUMAN	No assigned EC number	0.5428	1.0	1.0	yes	N/A
Q02647	DYL1_YEAST	No assigned EC number	0.3372	0.8	0.9130	yes	N/A
Q759T0	DYL1_ASHGO	No assigned EC number	0.3411	0.7904	0.9431	yes	N/A
A4F4L4	DNAL4_PIG	No assigned EC number	0.5428	1.0	1.0	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	7e-24
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	3e-15
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-05

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score = 86.5 bits (215), Expect = 7e-24
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 18  TYPLVHKTDMADELMTEVVDLCSMACEKHAANLE-QASRVIKDTMDKKYGPAWHVVVGET 76
              +V   DM +E+  + ++  + A EK   N+E   +  IK   DKKYGP WH +VG+ 
Sbjct: 1   GKAVVKNADMPEEMQEDAIECAAEALEKF--NVEKDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 77  FGFEITYECKSLLYMFFGGNLAICMWKCS 105
           FG  +T+E K  +Y +  G LA  ++K  
Sbjct: 59  FGSYVTHETKHFIYFYI-GQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 64.8 bits (158), Expect = 3e-15
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 9   REEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGP 67
              ++K V     V   DM++++  + +D  + A EK   N+E+  +  IK   DKKY P
Sbjct: 1   MMSDRKAV-----VKNADMSEDMQQDAIDCANQALEKF--NIEKDIAAYIKKEFDKKYNP 53

Query: 68  AWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
            WH +VG  FG  +T+E K  +Y F+ G +AI ++K 
Sbjct: 54  TWHCIVGRNFGSYVTHETKHFIY-FYLGQVAILLFKS 89

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 57  IKDTMDKKYGPAWHVVVGETFGFEITYECKSLLY 90
           +K   D  YGPAWH +VG +FG  +T+     LY
Sbjct: 75  LKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLY 108

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
KOG3430|consensus	90		100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.01
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	86.33
PF10703	265	MoaF: Molybdenum cofactor biosynthesis protein F;	82.91

>KOG3430|consensus

Probab=100.00  E-value=1.6e-41  Score=218.92  Aligned_cols=88  Identities=38%  Similarity=0.732  Sum_probs=83.6

Q ss_pred             cCCCceEEeCCCCHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEEC
Q psy16997         16 VHTYPLVHKTDMADELMTEVVDLCSMACEKHA-ANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFG   94 (105)
Q Consensus        16 ~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~-~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~   94 (105)
                      +..+++|+.+|||++||++|+++|.+|+++|+ ++++ +|..||++||++||++||||||++|||+|||++++||||++ 
T Consensus         2 ~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~-iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~-   79 (90)
T KOG3430|consen    2 LERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKD-IAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL-   79 (90)
T ss_pred             CCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe-
Confidence            56789999999999999999999999999999 5666 78999999999999999999999999999999999999999 


Q ss_pred             CcEEEEEeeeC
Q psy16997         95 GNLAICMWKCS  105 (105)
Q Consensus        95 ~~~~~LlfKt~  105 (105)
                      |.++|||||++
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            89999999985

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=2.3e-40  Score=215.80  Aligned_cols=86  Identities=33%  Similarity=0.669  Sum_probs=82.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCcE
Q psy16997         18 TYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNL   97 (105)
Q Consensus        18 ~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~   97 (105)
                      .+++|+.+|||++||++|+++|.+|+++|+.++| +|++||++||++|||+||||||++|||+|||++++||||++ |++
T Consensus         5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kd-iA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~-~~~   82 (90)
T PTZ00059          5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKD-IAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL-GQV   82 (90)
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE-CCE
Confidence            4678999999999999999999999999999988 69999999999999999999999999999999999999999 899


Q ss_pred             EEEEeeeC
Q psy16997         98 AICMWKCS  105 (105)
Q Consensus        98 ~~LlfKt~  105 (105)
                      +|||||++
T Consensus        83 ~vLlfK~~   90 (90)
T PTZ00059         83 AILLFKSG   90 (90)
T ss_pred             EEEEEecC
Confidence            99999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=5.9e-40  Score=225.56  Aligned_cols=96  Identities=23%  Similarity=0.400  Sum_probs=89.6

Q ss_pred             chhhHhhhcCCCceEEeCCCCHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEc
Q psy16997          8 SREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHA---ANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYE   84 (105)
Q Consensus         8 ~~~~~~~~~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~---~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~   84 (105)
                      .+++.-.+..+++.|+.+|||++||++|+++|.+|+++++   ++++ +|.+||++||++|||+||||||++|||+|||+
T Consensus        24 ~~~~~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekd-IA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe  102 (128)
T PLN03058         24 AKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKR-LALALKKEFDSAYGPAWHCIVGTSFGSYVTHS  102 (128)
T ss_pred             hhhHHhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHH-HHHHHHHHHhhhhCCceEEEECCcEEEEEEEc
Confidence            4477778889999999999999999999999999999985   3566 79999999999999999999999999999999


Q ss_pred             cCCEEEEEECCcEEEEEeeeC
Q psy16997         85 CKSLLYMFFGGNLAICMWKCS  105 (105)
Q Consensus        85 ~~~~i~F~~~~~~~~LlfKt~  105 (105)
                      +++||||++ |+++||||||+
T Consensus       103 ~~~fIyF~i-g~~aiLLfKt~  122 (128)
T PLN03058        103 TGGFLYFSI-DKVYILLFKTA  122 (128)
T ss_pred             CCcEEEEEE-CCEEEEEEecc
Confidence            999999999 89999999985

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=5.8e-39  Score=208.16  Aligned_cols=88  Identities=34%  Similarity=0.646  Sum_probs=82.0

Q ss_pred             cCCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECC
Q psy16997         16 VHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGG   95 (105)
Q Consensus        16 ~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~   95 (105)
                      ...+++|+.+|||++||++|+++|.+|+++++++++ +|++||++||++|||+||||||++|||++||++++++||++ +
T Consensus         2 ~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~e-iA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~-~   79 (89)
T PF01221_consen    2 SENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKE-IAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI-G   79 (89)
T ss_dssp             GSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE-T
T ss_pred             CCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHH-HHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE-C
Confidence            467899999999999999999999999999998888 79999999999999999999999999999999999999999 8


Q ss_pred             cEEEEEeeeC
Q psy16997         96 NLAICMWKCS  105 (105)
Q Consensus        96 ~~~~LlfKt~  105 (105)
                      +++||||||+
T Consensus        80 ~~~~li~kt~   89 (89)
T PF01221_consen   80 NIAFLIFKTQ   89 (89)
T ss_dssp             TEEEEEEEE-
T ss_pred             CEEEEEEecC
Confidence            9999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.01  E-value=0.011  Score=36.74  Aligned_cols=50  Identities=14%  Similarity=0.329  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEee
Q psy16997         52 QASRVIKDTMDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWK  103 (105)
Q Consensus        52 ~~A~~IK~~~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfK  103 (105)
                      ..++.|.+.+.++||+.+-||++. +|...+... ..|.-... +++..++|+
T Consensus        26 ~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~-~g~~c~af~   76 (76)
T PF04155_consen   26 ISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEK-NGVTCLAFA   76 (76)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeee-CCEEEEEEC
Confidence            368899999999999999999997 676666555 78888888 899999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=86.33  E-value=8.4  Score=30.33  Aligned_cols=52  Identities=12%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             HHHHHHHHhcccCCC-ceEEEEeC--------CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997         53 ASRVIKDTMDKKYGP-AWHVVVGE--------TFGFEITYECKSLLYMFFGGNLAICMWKC  104 (105)
Q Consensus        53 ~A~~IK~~~D~kyg~-~WhcIVG~--------~Fgs~vth~~~~~i~F~~~~~~~~LlfKt  104 (105)
                      .|..||+.||+.... .+-+||-.        .|.+...+....+|.-+-.|+..++||||
T Consensus       191 KAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  191 KADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            589999999997543 58888822        12222234556666554348999999998

>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []

Probab=82.91  E-value=2.2  Score=32.87  Aligned_cols=33  Identities=24%  Similarity=0.580  Sum_probs=25.5

Q ss_pred             ceEEEEeCCceeEEEEccCCEEEEEECCcEEEEEee
Q psy16997         68 AWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWK  103 (105)
Q Consensus        68 ~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~~~LlfK  103 (105)
                      +|||+.|..=|-.   +....=|+++.+++.++.||
T Consensus       182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~Wr  214 (265)
T PF10703_consen  182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWR  214 (265)
T ss_pred             EEEEeeccccCCC---CccceEEEEecCCEEEEEEE
Confidence            8999999755533   45667778887789999987

It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		4e-11
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		4e-11
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		4e-11
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		6e-11
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		7e-11
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		7e-11
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		8e-11
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		9e-11
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		2e-10
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-10
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-09
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		2e-09
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		3e-09

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++E+  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E +  +Y F+ G +AI ++K
Sbjct: 65  YVTHETRHFIY-FYLGQVAILLFK 87

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++E+  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E +  +Y F+ G +AI ++K
Sbjct: 65  YVTHETRHFIY-FYLGQVAILLFK 87

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++E+  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 9   VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E +  +Y F+ G +AI ++K
Sbjct: 67  YVTHETRHFIY-FYLGQVAILLFK 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
           ++   DM++E+  + VD  + A EK+    + A+  IK   DKKY P WH +VG  FG  
Sbjct: 9   VIKNADMSEEMQQDAVDCATQALEKYNIEPDIAA-YIKKEFDKKYNPTWHCIVGRNFGSY 67
Query: 81  ITYECKSLLYMFFGGNLAICMWKCS 105
           +T+E +  +Y F+ G +AI ++K  
Sbjct: 68  VTHETRHFIY-FYLGQVAILLFKSG 91

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 10  VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 80  EITYECKSLLYMFFGGNLAICMWKCS 105
            +T+E K  +Y F+ G +AI ++K  
Sbjct: 68  YVTHETKHFIY-FYLGQVAILLFKSG 92

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 7   VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80  EITYECKSLLYMFFGGNLAICMWK 103
            +T+E K  +Y F+ G +AI ++K
Sbjct: 65  YVTHETKHFIY-FYLGQVAILLFK 87

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG  FG 
Sbjct: 12  VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 80  EITYECKSLLYMFFGGNLAICMWKCS 105
            +T+E K  +Y F+ G +AI ++K  
Sbjct: 70  YVTHETKHFIY-FYLGQVAILLFKSG 94

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
           +V   DM +E+  + +D  + A +K+    + A+  IK   D+KY P WH VVG  FG  
Sbjct: 20  VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAH-IKKEFDRKYDPTWHCVVGRNFGSY 78
Query: 81  ITYECKSLLYMFFGGNLAICMWKCS 105
           +T+E K+ +Y F+ G +AI ++K  
Sbjct: 79  VTHETKNFIY-FYIGQVAILLFKSG 102

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
           ++   DM++E+  + V+  + A EK+    + A+  IK   DKKY P WH +VG  FG  
Sbjct: 3   VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAH-IKKEFDKKYNPTWHCIVGRNFGSY 61
Query: 81  ITYECKSLLYMFFGGNLAICMWK 103
           +T+E K  +Y F+ G +AI ++K
Sbjct: 62  VTHETKHFIY-FYLGQVAILLFK 83

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
           ++   DM++E+  + V+  + A EK+    + A+  IK   DKKY P WH +VG  FG  
Sbjct: 7   VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAH-IKKEFDKKYNPTWHCIVGRNFGSY 65
Query: 81  ITYECKSLLYMFFGGNLAICMWK 103
           +T+E K  +Y F+ G +AI ++K
Sbjct: 66  VTHETKHFIY-FYLGQVAILLFK 87

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGET--F 77
           ++   DM++++  + VD  + A EK+  N+E+  +  IK   DKKY P WH +VG +  F
Sbjct: 7   VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 78  GFEITYECKSLLYMFFGGNLAICMWKCS 105
           G  +T+E K  +Y F+ G +AI ++K  
Sbjct: 65  GSYVTHETKHFIY-FYLGQVAILLFKSG 91

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 21  LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
           ++   DM ++L  + +D  + A EK+  N+E+  +  IK   D+K+ P WH VVG  FG 
Sbjct: 7   VIKNADMPEDLQQDAIDCANQALEKY--NIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 80  EITYECKSLLYMFFGGNLAICMWKCS 105
            +T+E    +Y F+ G +A+ ++K  
Sbjct: 65  YVTHETHHFIY-FYIGQVAVLLFKSG 89

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 20  PLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGF 79
           P+V  +D+ D+L  +++ +   A +K+    + A  V K  +D KYG  WHV+VG+ FG 
Sbjct: 14  PIVKASDITDKLKEDILTISKDALDKYQLERDIAGTV-KKQLDVKYGNTWHVIVGKNFGS 72
Query: 80  EITYECKSLLYMFFGGNLAICMWKCS 105
            +T+E    +Y F+ G LA  ++K +
Sbjct: 73  YVTHEKGHFVY-FYIGPLAFLVFKTA 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	2e-29
1yo3_A	102	Dynein light chain 1; structural genomics consorti	2e-27

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  100 bits (251), Expect = 2e-29
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 18  TYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETF 77
           + P+V  +D+ D+L  +++ +   A +K+    + A   +K  +D KYG  WHV+VG+ F
Sbjct: 12  STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGT-VKKQLDVKYGNTWHVIVGKNF 70

Query: 78  GFEITYECKSLLYMFFGGNLAICMWKCS 105
           G  +T+E    +Y F+ G LA  ++K +
Sbjct: 71  GSYVTHEKGHFVY-FYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score = 95.3 bits (237), Expect = 2e-27
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 10  EEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAW 69
                +V    +V   DM +E+  + +D  + A +K+    + A   IK   D+KY P W
Sbjct: 9   HHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIA-AHIKKEFDRKYDPTW 67

Query: 70  HVVVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
           H VVG  FG  +T+E K+ +Y F+ G +AI ++K 
Sbjct: 68  HCVVGRNFGSYVTHETKNFIY-FYIGQVAILLFKS 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=7.6e-43  Score=226.14  Aligned_cols=87  Identities=29%  Similarity=0.604  Sum_probs=83.6

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCc
Q psy16997         17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGN   96 (105)
Q Consensus        17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~   96 (105)
                      ..+++|+.+|||++||++|+++|.+|+++|+.+++ +|++||++||++|||+||||||++|||+|||++++||||++ |+
T Consensus         3 ~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~-iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~-g~   80 (89)
T 3rjs_A            3 DRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKD-IAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI-GQ   80 (89)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE-TT
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHH-HHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE-CC
Confidence            35799999999999999999999999999998888 68999999999999999999999999999999999999999 89


Q ss_pred             EEEEEeeeC
Q psy16997         97 LAICMWKCS  105 (105)
Q Consensus        97 ~~~LlfKt~  105 (105)
                      ++||||||+
T Consensus        81 ~~iLlfKtg   89 (89)
T 3rjs_A           81 VAVLLFKSG   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999999996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=6.4e-42  Score=226.79  Aligned_cols=90  Identities=32%  Similarity=0.628  Sum_probs=82.8

Q ss_pred             hhcCCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEE
Q psy16997         14 KIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFF   93 (105)
Q Consensus        14 ~~~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~   93 (105)
                      ..++++++|+.+|||++||++|+++|.+|+++|+++++ +|++||++||++|||+||||||++|||+|||++++||||++
T Consensus        13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekd-iA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~   91 (102)
T 1yo3_A           13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKD-IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYI   91 (102)
T ss_dssp             -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEE
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEE
Confidence            45678999999999999999999999999999998887 68999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeeeC
Q psy16997         94 GGNLAICMWKCS  105 (105)
Q Consensus        94 ~~~~~~LlfKt~  105 (105)
                       |+++||||||+
T Consensus        92 -g~~aiLlfKt~  102 (102)
T 1yo3_A           92 -GQVAILLFKSG  102 (102)
T ss_dssp             -TTEEEEEEECC
T ss_pred             -CCEEEEEEecC
Confidence             89999999986

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-42  Score=225.31  Aligned_cols=87  Identities=30%  Similarity=0.623  Sum_probs=83.6

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCc
Q psy16997         17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGN   96 (105)
Q Consensus        17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~   96 (105)
                      ..+++|+.+|||++||++|+++|.+|+++|+++++ +|++||++||++|||+||||||++|||+|||++++||||++ |+
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~-iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~-g~   88 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERD-IAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYI-GP   88 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEE-TT
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEE-CC
Confidence            56899999999999999999999999999998888 68999999999999999999999999999999999999999 89


Q ss_pred             EEEEEeeeC
Q psy16997         97 LAICMWKCS  105 (105)
Q Consensus        97 ~~~LlfKt~  105 (105)
                      ++||||||+
T Consensus        89 ~aiLlfKtg   97 (97)
T 4ds1_A           89 LAFLVFKTA   97 (97)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	7e-26

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 90.2 bits (224), Expect = 7e-26
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 12  EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHV 71
           ++K V     +   DM++E+  + VD  + A EK+    + A+  IK   DKKY P WH 
Sbjct: 1   DRKAV-----IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAY-IKKEFDKKYNPTWHC 54

Query: 72  VVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
           +VG  FG  +T+E +  +Y F+ G +AI ++K 
Sbjct: 55  IVGRNFGSYVTHETRHFIY-FYLGQVAILLFKS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4e-42  Score=220.40  Aligned_cols=86  Identities=33%  Similarity=0.665  Sum_probs=82.7

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCcE
Q psy16997         18 TYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNL   97 (105)
Q Consensus        18 ~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~   97 (105)
                      .+++|+.+|||++||++|+++|.+|+++|+.+++ +|++||++||++|||+||||||+||||+|||++++||||++ |++
T Consensus         2 ~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~d-iA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~-g~~   79 (87)
T d3e2ba1           2 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKD-IAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYL-GQV   79 (87)
T ss_dssp             CCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEE-TTE
T ss_pred             CcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEE-CCE
Confidence            3678999999999999999999999999999888 68999999999999999999999999999999999999999 899


Q ss_pred             EEEEeeeC
Q psy16997         98 AICMWKCS  105 (105)
Q Consensus        98 ~~LlfKt~  105 (105)
                      +|||||||
T Consensus        80 ~~Ll~Ktg   87 (87)
T d3e2ba1          80 AILLFKSG   87 (87)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999996