Psyllid ID: psy1701

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSTSTSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccccccHHHEEEEEEEEHccccccccccccccHccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHcHHHHHHHHEccccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mststsvnfqefwidargfrdnhsgHFMYLLCTYAvtdlpdtstrhnvapftqfplFFSTVLFAMEGigtvlpiensmkkpghflgkfGVLNIAMAVVISFYGMVGYcgylkygedtkgsitlnlpkdpfseSIKILVALSILFTyglqfgvpsEIVWERikhrvpiprhnmgyYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGlfcpavidyvtfydpnkswyrprtIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Flexible Loop (DISEMBL)
mststsvnFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Low Complexity Region (SEG)
MSTSTSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFiiilislgalisgTYSSIEEIIAFYAINPFF
Disordered region (IsUnstruct)
******VNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINP**
Disordered Region (DISOPRED)
****TSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Disordered Region (DISEMBL)
********FQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Disordered Region (DISPRO)
*****SVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAIN***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSTSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYAINPFF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q8K4D3	475	Proton-coupled amino acid	yes	N/A	0.822	0.467	0.401	6e-35
Q924A5	475	Proton-coupled amino acid	yes	N/A	0.822	0.467	0.401	1e-34
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.822	0.425	0.382	4e-34
Q7Z2H8	476	Proton-coupled amino acid	yes	N/A	0.822	0.466	0.384	1e-33
Q495M3	483	Proton-coupled amino acid	no	N/A	0.859	0.480	0.360	1e-33
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.822	0.444	0.378	6e-32
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.825	0.442	0.366	1e-31
Q495N2	470	Proton-coupled amino acid	no	N/A	0.833	0.478	0.364	5e-31
Q4V8B1	477	Proton-coupled amino acid	no	N/A	0.796	0.450	0.367	8e-31
Q811P0	477	Proton-coupled amino acid	no	N/A	0.814	0.461	0.363	2e-30

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 133/229 (58%), Gaps = 7/229 (3%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           + V  +PD S    VAP+  +PLFF T +FA EGIG VLP+EN MK    F     +L +
Sbjct: 237 FIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPL---ILYL 293

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVP 153
            MA++   Y  +G  GYL++G + KGSITLNLP     +S+K+L ++ I FTY LQF V 
Sbjct: 294 GMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVA 353

Query: 154 SEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLF 213
           +EI+   I  RVP     M    +R  M+  T ++A +IP L  +ISLVG++  S L L 
Sbjct: 354 AEIIIPAIVSRVPEHFELMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALI 413

Query: 214 CPAVIDYVTFYDPNKSWYRPRTI-KNFIIILISLGALISGTYSSIEEII 261
            P +++ VT+Y    S   P T+ K+ +I ++     + GTY S+ E+I
Sbjct: 414 IPPLLEVVTYYGEGIS---PLTVTKDALISILGFVGFVVGTYESLCELI 459

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.
Mus musculus (taxid: 10090)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 131/229 (57%), Gaps = 7/229 (3%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           + V  +PD S    VAP+  +PLFF T +FA EGIG VLP+EN MK    F     +L +
Sbjct: 237 FIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPL---ILYL 293

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVP 153
            MA++   Y  +G  GYL++G D KGSITLNLP     +S+K+L ++ I FTY LQF V 
Sbjct: 294 GMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVA 353

Query: 154 SEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLF 213
           +EI+   I  RVP     +     R  M+  T ++A +IP L  +ISLVG++  S L L 
Sbjct: 354 AEIIIPAIVSRVPERFELVVDLSARTAMVCVTCVLAVLIPRLDLVISLVGSVSSSALALI 413

Query: 214 CPAVIDYVTFYDPNKSWYRPRTI-KNFIIILISLGALISGTYSSIEEII 261
            P +++  T+Y    S   P TI K+ +I ++     + GTY S+ E+I
Sbjct: 414 IPPLLEVTTYYGEGIS---PLTITKDALISILGFVGFVVGTYESLWELI 459

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y + +L D  T      +  +PLFF T +FA EGIG VLP+EN M+    F      LNI
Sbjct: 273 YVIRNLSDPRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLENRMRDKKDF---SKALNI 329

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGV 152
            MA+V + Y  +   GY  +G+  KGSITLNLP+D +  + +KIL +  I  TY +Q+ V
Sbjct: 330 GMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILYSFGIYVTYAIQYYV 389

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P+EI+   +  RV   R  +  + MR  ++  T  VA +IP L  +IS VGA+  S L L
Sbjct: 390 PAEIILPAVTSRVQKTRKLLCEFTMRFFLVCLTCAVAVLIPRLDLVISFVGAVSSSTLAL 449

Query: 213 FCPAVIDYVTFYDPNKS-WYRPRTIKNFIIILISLGALISGTYSSIEEII 261
             P +++ +T++  N S W     +K+  I +I     I+GTY +IEE+I
Sbjct: 450 ILPPLVEIITYHKENLSPWV---IMKDVGIAVIGFVGFIAGTYVTIEEMI 496

Xenopus laevis (taxid: 8355)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           + V  +PD S    VAP+  +PLFF T +F+ EGIG VLP+EN MK P  F     +L +
Sbjct: 238 FIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPL---ILYL 294

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVP 153
            M +V   Y  +G  GYL++G + +GSITLNLP     +S+K+L ++ I FTY LQF VP
Sbjct: 295 GMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVP 354

Query: 154 SEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLF 213
           +EI+      R P     +    +R +++  T ++A +IP L  +ISLVG++  S L L 
Sbjct: 355 AEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALI 414

Query: 214 CPAVIDYVTFYDPNKSWYRPRTI-KNFIIILISLGALISGTYSSIEEII 261
            P +++  TFY    S   P TI K+ +I ++     + GTY ++ E+I
Sbjct: 415 IPPLLEVTTFYSEGMS---PLTIFKDALISILGFVGFVVGTYEALYELI 460

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 15/247 (6%)

Query: 28  MYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGK 87
           + ++  Y   ++PD S    VA +  +PLFF T +F+ E IG VLP+EN MK   HF   
Sbjct: 239 LVIIIQYITQEIPDPSRLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKNARHFPA- 297

Query: 88  FGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
             +L++ M++V S Y  +   GYL++G+D K SI+LNLP     +S+K+L    IL TY 
Sbjct: 298 --ILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLPNCWLYQSVKLLYIAGILCTYA 355

Query: 148 LQFGVPSEIV----WERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVG 203
           LQF VP+EI+      R+  R  +P        +R +M+  T L+A +IP L  +ISLVG
Sbjct: 356 LQFYVPAEIIIPFAISRVSTRWALPLD----LSIRLVMVCLTCLLAILIPRLDLVISLVG 411

Query: 204 AICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTI-KNFIIILISLGALISGTYSSIEEIIA 262
           ++  + L L  P +++  TFY    S   P TI K+ +I ++     + GTY +++E++ 
Sbjct: 412 SVSGTALALIIPPLLEVTTFYSEGMS---PLTIFKDALISILGFVGFVVGTYQALDELLK 468

Query: 263 FYAINPF 269
               +PF
Sbjct: 469 SEDSHPF 475

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y V ++PD      VA + ++PLFF T +FA EGIG VLP+EN M++   F      LNI
Sbjct: 250 YVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQA---LNI 306

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGV 152
            MA+V   Y  +   GY+ + ++ KGSITLNLP+D +  +S+KIL +  I  TY +QF V
Sbjct: 307 GMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQFYV 366

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P+EI+   +  R+      +  + +R L++  T   A +IP L  +IS VGA+  S L L
Sbjct: 367 PAEIIIPGVTARLHAKWKRICEFGIRSLLVSITRAGAILIPRLDIVISFVGAVSSSTLAL 426

Query: 213 FCPAVIDYVTF-YDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261
             P +++ +TF  D    W     +KN  I    +   + GTY ++EEII
Sbjct: 427 ILPPLVEILTFSKDHYNIWM---ILKNISIAFTGVVGFLLGTYVTVEEII 473

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 6/229 (2%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y V ++PD      VA + ++PLFF T +FA EGIG VLP+EN MK+   F      LNI
Sbjct: 253 YVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMKESKRFP---QALNI 309

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGV 152
            M +V + Y  +   GY+ + ++ KGSITLNLP+D +  +S+KIL +  I  TY +QF V
Sbjct: 310 GMGIVTTLYVTLATLGYMCFHDEIKGSITLNLPQDVWLYQSVKILYSFGIFVTYSIQFYV 369

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P+EI+   I  +       +  + +R  ++  T   A +IP L  +IS VGA+  S L L
Sbjct: 370 PAEIIIPGITSKFHTKWKQICEFGIRSFLVSITCAGAILIPRLDIVISFVGAVSSSTLAL 429

Query: 213 FCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261
             P +++ +TF   + + +    +KN  I    +   + GTY ++EEII
Sbjct: 430 ILPPLVEILTFSKEHYNIW--MVLKNISIAFTGVVGFLLGTYITVEEII 476

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 28  MYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGK 87
           M L+  Y +  +P  S    +A +  F LFF T +F  EG+G VLP++N MK P  F   
Sbjct: 227 MALIFEYIMEGIPYPSNLPLMANWKTFLLFFGTAIFTFEGVGMVLPLKNQMKHPQQF--S 284

Query: 88  FGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
           F VL + M++VI  Y ++G  GY+K+G DT+ SITLNLP     +S+K++ ++ I FTY 
Sbjct: 285 F-VLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCWLYQSVKLMYSIGIFFTYA 343

Query: 148 LQFGVPSEIVWERIKHRVPIPRHNMGYYI---MRGLMIIGTVLVAAIIPNLGPIISLVGA 204
           LQF VP+EI+   I   +     +   ++   +R  ++  T + A +IP L  +ISLVG+
Sbjct: 344 LQFHVPAEII---IPFAISQVSESWALFVDLSVRSALVCLTCVSAILIPRLDLVISLVGS 400

Query: 205 ICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEI 260
           +  S L L  PA+++ V FY  + S       K+ +I ++ L   I GTY ++ E+
Sbjct: 401 VSSSALALIIPALLEIVIFYSEDMSCV--TIAKDIMISIVGLLGCIFGTYQALYEL 454

Homo sapiens (taxid: 9606)

>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 38  DLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAV 97
            +P  S    VA +  F LFF T +F  EG+G VLP+++ MK P  F     VL + M+ 
Sbjct: 244 QIPHHSHLPLVASWKTFLLFFGTAIFTFEGVGMVLPLKSQMKSPQQFPA---VLYLGMSF 300

Query: 98  VISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIV 157
           VI  Y  +G  GY+K+G DT+ SITLNLP     +S+K++ ++ I FTY LQF VP+EI+
Sbjct: 301 VIFLYICLGTLGYMKFGADTQASITLNLPNCWLYQSVKLMYSVGIFFTYALQFHVPAEII 360

Query: 158 WERIKHRVPIPRHNMGYYI---MRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFC 214
              +  R      N   +I   +R  ++  T   A +IP L  +ISLVG++  S L L  
Sbjct: 361 VPYVVSRA---SENWALFIDLTVRAALVCLTCFSAVLIPRLDLVISLVGSVSSSALALII 417

Query: 215 PAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEI 260
           P +++  TFY  N S       K+ +I ++ L   + GTY ++ E+
Sbjct: 418 PPLLEIATFYSENISC--TTIAKDIMISILGLLGCVLGTYQALYEM 461

Rattus norvegicus (taxid: 10116)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 128/234 (54%), Gaps = 14/234 (5%)

Query: 40  PDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVI 99
           P  S    VA +  F LFF T +F  EG+G VLP+++ MK P  F     VL + M+ VI
Sbjct: 246 PHHSNLPLVANWKTFLLFFGTAIFTFEGVGMVLPLKSQMKSPQQFPA---VLYLGMSFVI 302

Query: 100 SFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWE 159
             Y  +G  GY+K+G DT+ SITLNLP     +S+K++ ++ I FTY LQF VP+EI+  
Sbjct: 303 FLYICLGTLGYMKFGTDTQASITLNLPICWLYQSVKLMYSVGIFFTYALQFHVPAEIIVP 362

Query: 160 RIKHRVPIPRHNMGYYI---MRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPA 216
            +  RV     N   ++   +R  ++  T   A +IP L  +ISLVG++  S L +  P 
Sbjct: 363 YVVSRV---SENWALFVDLTVRTALVCLTCFSAVLIPRLDLVISLVGSVSSSALAIIIPP 419

Query: 217 VIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIA---FYAIN 267
           +++  TFY  N S      +K+ +I ++ L   + GTY ++ E+     FY  N
Sbjct: 420 LLEIATFYSENISC--ATIVKDIMISILGLLGCVLGTYQALYEMTQQTHFYMAN 471

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
345481623	936	PREDICTED: hypothetical protein LOC10012	0.855	0.246	0.508	3e-55
357628536	480	amino acid transporter [Danaus plexippus	0.855	0.481	0.478	4e-54
289740553	467	amino acid transporter protein [Glossina	0.792	0.458	0.511	1e-53
157115459	493	amino acid transporter [Aedes aegypti] g	0.833	0.456	0.495	1e-53
170050822	483	proton-coupled amino acid transporter 1	0.833	0.465	0.486	3e-53
195129333	592	GI13867 [Drosophila mojavensis] gi|19392	0.848	0.386	0.463	1e-52
345489802	515	PREDICTED: proton-coupled amino acid tra	0.844	0.442	0.5	2e-52
125806607	477	GA21321 [Drosophila pseudoobscura pseudo	0.825	0.467	0.473	3e-52
195124265	482	GI21155 [Drosophila mojavensis] gi|19391	0.818	0.458	0.463	4e-52
242022480	513	proton-coupled amino acid transporter, p	0.840	0.442	0.482	7e-52

>gi|345481623|ref|XP_001606954.2| PREDICTED: hypothetical protein LOC100123329 [Nasonia vitripennis]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 1/232 (0%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y  +DL   S  H V+ + Q P FF+TV+FA+EGIGTV+PIENSM  P HF+G  GVLNI
Sbjct: 648 YIFSDLKPLSEIHYVSTWAQMPKFFATVIFAIEGIGTVMPIENSMANPNHFIGCPGVLNI 707

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPK-DPFSESIKILVALSILFTYGLQFGV 152
           +M VVIS Y M+G  GYL +G+D KGSITLNLP  D  ++ + IL+AL+++ TYGLQF V
Sbjct: 708 SMTVVISLYTMMGVFGYLSFGDDAKGSITLNLPPGDILAQVVNILIALAVILTYGLQFFV 767

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P EI+W  IKH+       +G  +MR LM++ TV VA ++P L P ISLVGAI FS LG+
Sbjct: 768 PLEIIWNSIKHKFSHRWEVLGETVMRILMVLLTVSVAMLVPRLEPFISLVGAIFFSFLGI 827

Query: 213 FCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFY 264
           F PAV++ V+ ++ +      R  KN  + L+++ ALISGT+ S+ +II+ Y
Sbjct: 828 FIPAVVETVSCWECHLGTCNWRLWKNCFLALVAVCALISGTWISLLDIISLY 879

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628536|gb|EHJ77833.1| amino acid transporter [Danaus plexippus]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/232 (47%), Positives = 155/232 (66%), Gaps = 1/232 (0%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y   DLP+ + R  VA FTQ+PLF STV+FAMEGIG V+P+EN M KP  FLG  GVLN+
Sbjct: 233 YIFDDLPNPAERQMVASFTQWPLFISTVIFAMEGIGVVMPVENEMAKPQQFLGCPGVLNV 292

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDP-FSESIKILVALSILFTYGLQFGV 152
           AM +VIS YG+VG+ GY+KYG+  +GS+TLNLP+D   ++S KIL+AL+ILFTY LQF V
Sbjct: 293 AMTIVISLYGIVGFFGYIKYGDTVRGSVTLNLPQDEILAQSAKILMALAILFTYSLQFYV 352

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P E++W  +  ++ I  HN     +R   ++G+V +AA  P+L   I+L GA+  S LGL
Sbjct: 353 PMEMIWRELHSKISIKYHNFMQITIRTTAVVGSVAIAAAFPDLELFINLSGAVFLSSLGL 412

Query: 213 FCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFY 264
             PA++D V  ++     Y     KN +++++S  AL +G+Y SI  I+  Y
Sbjct: 413 LTPAIVDTVHNWNRGLGKYNWILWKNILVMMLSFIALFAGSYVSIVGIVEKY 464

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740553|gb|ADD19024.1| amino acid transporter protein [Glossina morsitans morsitans]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/215 (51%), Positives = 157/215 (73%), Gaps = 1/215 (0%)

Query: 48  VAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY 107
           VA  TQ PLFF+TV+FAMEGIG V+P+ENSMKKP HFLG  GVLN AM  V++ Y ++G+
Sbjct: 237 VAKATQLPLFFATVIFAMEGIGVVMPVENSMKKPQHFLGCPGVLNTAMMTVVALYAIIGF 296

Query: 108 CGYLKYGEDTKGSITLNLP-KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVP 166
            GY+++G + +GSITLNLP   P +++ K+L+AL+ILFTYGLQF +P++I+W +IKH+  
Sbjct: 297 FGYIRFGSEVRGSITLNLPYGAPLADAAKLLMALAILFTYGLQFYIPNDILWSKIKHKFD 356

Query: 167 IPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP 226
              HN+   ++R  +I+ +  VAA IPNL P ISLVGA+ FS+LG+F P++ + V  +  
Sbjct: 357 PKIHNISQILLRTGIILISGGVAAAIPNLEPFISLVGAVFFSLLGIFVPSLTETVYLWPN 416

Query: 227 NKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261
           N  + + + IKN I+ ++S+ ALI+G   SI EII
Sbjct: 417 NLGFCKWKLIKNIILCILSILALITGAAVSIIEII 451

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115459|ref|XP_001658216.1| amino acid transporter [Aedes aegypti] gi|108876914|gb|EAT41139.1| AAEL007197-PA [Aedes aegypti]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 154/228 (67%), Gaps = 3/228 (1%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y  TDLP  S R  VA     P+FF TV+FA+EGIG V+ +EN+MK P +F+G  GVLNI
Sbjct: 259 YITTDLPAFSERKGVADVHHMPMFFGTVIFALEGIGVVMSLENNMKTPQNFIGCPGVLNI 318

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLP-KDPFSESIKILVALSILFTYGLQFGV 152
            M VV+  Y +VG+ GYLKYGEDTKGS+TLNLP +D  ++ +KI++A++I  TY LQF V
Sbjct: 319 GMTVVVVLYALVGFLGYLKYGEDTKGSVTLNLPVEDILAQLVKIMIAVAIFLTYSLQFYV 378

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P EI+W+ ++H     ++   Y I  GL+ I TV +AA +PN+GP ++L+GA+C S LG+
Sbjct: 379 PMEIIWKNVQHNFNEHKNAAEYGIRIGLVAI-TVFIAAALPNIGPFVTLIGAVCLSTLGM 437

Query: 213 FCPAVIDYVTFYD-PNKSWYRPRTIKNFIIILISLGALISGTYSSIEE 259
             PAVI+ VTFY+ P    +     KN  +IL  +   I+GTY SIEE
Sbjct: 438 MFPAVIELVTFYEKPGYGRFNWILWKNIFLILFGVVGFITGTYVSIEE 485

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050822|ref|XP_001861484.1| proton-coupled amino acid transporter 1 [Culex quinquefasciatus] gi|167872286|gb|EDS35669.1| proton-coupled amino acid transporter 1 [Culex quinquefasciatus]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 155/228 (67%), Gaps = 3/228 (1%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y V DLP  S R  +A     P+FF TV+FA+EGIG V+ +EN+MK P HF+G  GVLN 
Sbjct: 249 YIVMDLPAFSERKGIADLHHMPMFFGTVIFALEGIGVVMSLENNMKTPQHFIGCPGVLNT 308

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLP-KDPFSESIKILVALSILFTYGLQFGV 152
            M+VV+  Y  VG+ GYLKYG+DTKGS+TLNLP +D  ++++KI++A++I  TY LQF V
Sbjct: 309 GMSVVVVLYAAVGFLGYLKYGDDTKGSVTLNLPVEDILAQAVKIMIAIAIFLTYSLQFYV 368

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P EI+W+ +KH     ++   Y I  GL+ I TV++AA +PN+GP ++L+GA+C S LG+
Sbjct: 369 PMEIIWKNVKHNFNEHKNVAEYGIRIGLVSI-TVIIAAALPNIGPFVTLIGAVCLSTLGM 427

Query: 213 FCPAVIDYVTFYD-PNKSWYRPRTIKNFIIILISLGALISGTYSSIEE 259
             PAVI+ VT+Y+ P    +     KN  +IL  +   I+GTY SIEE
Sbjct: 428 MFPAVIELVTYYEKPGYGRFNWILWKNIGLILFGVVGFITGTYVSIEE 475

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129333|ref|XP_002009110.1| GI13867 [Drosophila mojavensis] gi|193920719|gb|EDW19586.1| GI13867 [Drosophila mojavensis]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 152/231 (65%), Gaps = 2/231 (0%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y  +DLP  S R  + P  Q+PLFF TV+FA+EGIG V+ +EN MK P HF+G   VLN 
Sbjct: 351 YMFSDLPAPSERAGIVPPAQWPLFFGTVIFALEGIGVVMSLENDMKNPSHFIGCPSVLNF 410

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLP-KDPFSESIKILVALSILFTYGLQFGV 152
            M +VI  Y +VG+ GYLKYG++T+ SITLNLP +D  ++S+K+++A++I FT+ LQF V
Sbjct: 411 GMGLVIGLYTLVGFFGYLKYGDETQASITLNLPLEDKLAQSVKLMIAIAIFFTFTLQFYV 470

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P  I+W+ I+ ++P  R NM  Y MR  ++     +A  +PNLGP ISL+GA+C S LG+
Sbjct: 471 PVSILWKGIESKIPAARQNMSEYGMRVGLVCLCCGIAVALPNLGPFISLIGAVCLSTLGM 530

Query: 213 FCPAVIDYVTFY-DPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIA 262
             PAVI+   +Y +P    ++ R  KN  +IL  +   ++GTY SI E  A
Sbjct: 531 IVPAVIELAVYYEEPGFGRFKWRLWKNSGLILFGIVGFVTGTYVSIREFQA 581

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489802|ref|XP_001603760.2| PREDICTED: proton-coupled amino acid transporter 4-like [Nasonia vitripennis]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 153/232 (65%), Gaps = 4/232 (1%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y  TDLP  ST   VA  T+ PLFF   +FA+EGIG V+P+EN+MK P HF+G  GVLNI
Sbjct: 267 YIFTDLPAVSTVRPVASITEMPLFFGIAIFALEGIGVVMPLENNMKTPTHFIGCPGVLNI 326

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPK-DPFSESIKILVALSILFTYGLQFGV 152
            M  V++ Y  VG+ GYLKY + T+GSITLNL + D  ++S+K+++A +I FTYGLQF V
Sbjct: 327 GMFFVVTLYSTVGFFGYLKYQDKTQGSITLNLDEHDVLAQSVKLMIAAAIFFTYGLQFYV 386

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P EI+W+ IKHR    R     Y +R  ++I TV +A  IPNL P ISLVGA+C S LGL
Sbjct: 387 PMEIIWKNIKHRFG-ARKLAAEYAVRISLVIFTVCMAIAIPNLSPFISLVGALCLSTLGL 445

Query: 213 FCPAVIDYVTFYDPNKSWYRP--RTIKNFIIILISLGALISGTYSSIEEIIA 262
             P++I+ VT ++      R   R  KN +II   +  L++GTY+SI EI A
Sbjct: 446 MFPSIIELVTVWEQENGLGRCYWRLWKNILIIAFGVLGLLTGTYTSIGEITA 497

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125806607|ref|XP_001360088.1| GA21321 [Drosophila pseudoobscura pseudoobscura] gi|195148946|ref|XP_002015423.1| GL11031 [Drosophila persimilis] gi|54635259|gb|EAL24662.1| GA21321 [Drosophila pseudoobscura pseudoobscura] gi|194109270|gb|EDW31313.1| GL11031 [Drosophila persimilis]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 157/224 (70%), Gaps = 1/224 (0%)

Query: 43  STRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFY 102
           S +  +AP    PLFF+TV+FAMEGIG V+P+ENSM+KP  FLG  GVLN AM  V+  Y
Sbjct: 251 SDKPLIAPAAHIPLFFATVIFAMEGIGVVMPVENSMRKPQQFLGCPGVLNTAMITVVLLY 310

Query: 103 GMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGVPSEIVWERI 161
            ++G+ GY+++G+  +GSITLNLP+  +  ++ K+L+A++ILFT+GLQF VP+EI+W +I
Sbjct: 311 AIIGFFGYVRFGDTVRGSITLNLPEGSWLGDTAKLLMAVAILFTFGLQFYVPNEILWRKI 370

Query: 162 KHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYV 221
            H+    +HN+   ++R  +I+ +  VAA IPNL P ISLVGA+ FS+LG+F P+ ++ V
Sbjct: 371 NHKFSPEKHNITQIMLRSGIILVSGGVAAAIPNLEPFISLVGAVFFSLLGIFVPSFVETV 430

Query: 222 TFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAFYA 265
             Y     W   + +KN I+ ++S+ ALI+G  +SI EII  Y+
Sbjct: 431 YLYPDRLGWCNWKMVKNIILGILSILALIAGAVASIGEIIEMYS 474

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195124265|ref|XP_002006614.1| GI21155 [Drosophila mojavensis] gi|193911682|gb|EDW10549.1| GI21155 [Drosophila mojavensis]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 158/222 (71%), Gaps = 1/222 (0%)

Query: 41  DTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVIS 100
           D S +  +AP    PLFF+TV+FAMEGIG V+P+ENSM+KP  FLG  GVLN AM  V+ 
Sbjct: 256 DLSDKPLIAPAAHIPLFFATVIFAMEGIGVVMPVENSMRKPQQFLGCPGVLNTAMITVVV 315

Query: 101 FYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGVPSEIVWE 159
            Y ++G+ GY+++G++ +GSITLNLP   +  ++ K+L+A++ILFTYGLQF VP+E++W 
Sbjct: 316 LYAIIGFFGYVRFGDEVRGSITLNLPDGSWLGDTAKLLMAVAILFTYGLQFYVPNEVLWR 375

Query: 160 RIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVID 219
           +I+H+    +HN+   ++R  +I+ +  +AA IPNL P ISLVGA+ FS+LG+F P+ ++
Sbjct: 376 KIQHKFRPEKHNITQILLRTGIILVSGGIAAGIPNLEPFISLVGAVFFSLLGIFVPSFVE 435

Query: 220 YVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261
            V  +     W + + IKN ++ + S+ AL++G  +SI+EII
Sbjct: 436 TVYLWPDRLGWCKWKLIKNILLGVFSILALVAGAAASIDEII 477

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022480|ref|XP_002431668.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] gi|212516976|gb|EEB18930.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis]

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 151/230 (65%), Gaps = 3/230 (1%)

Query: 34  YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
           Y   DLP  + R   + F Q PLFF T +FA+EGIG V+P+EN+MK P  F+G  GVLNI
Sbjct: 279 YVFNDLPHVTERKYFSSFQQLPLFFGTAIFALEGIGVVMPLENNMKTPQKFIGCPGVLNI 338

Query: 94  AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDP-FSESIKILVALSILFTYGLQFGV 152
            M VV+  Y  VG+ GYLK+GEDT+ SITLNLPKD   ++S+K+++A++I  TY LQF V
Sbjct: 339 GMTVVVILYTAVGFFGYLKFGEDTQASITLNLPKDELLAQSVKVMIAVTIFLTYSLQFYV 398

Query: 153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
           P  I+W+  KH  P        Y +R  ++I +V +AA +PNLGP ISLVGA+C S LGL
Sbjct: 399 PMGIIWKGCKHWFP-KNEVPAEYCIRIFLVILSVGIAAAVPNLGPFISLVGAMCLSTLGL 457

Query: 213 FCPAVIDYVTFYD-PNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII 261
             PAVI+ VTF++ P    +  R  KN  ++L  +    +GT SS++EI+
Sbjct: 458 IFPAVIELVTFWEKPGMGKFYWRIWKNIFLMLFGILGFATGTISSLQEIM 507

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.881	0.502	0.428	2e-49
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.859	0.464	0.378	2e-40
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.714	0.382	0.451	8.7e-40
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.870	0.505	0.373	5.1e-35
WB|WBGene00012804	455	Y43F4B.7 [Caenorhabditis elega	0.855	0.507	0.353	4.6e-34
MGI|MGI:2445299	475	Slc36a1 "solute carrier family	0.844	0.48	0.382	5.8e-34
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.870	0.521	0.337	9.5e-34
RGD|619801	475	Slc36a1 "solute carrier family	0.840	0.477	0.385	9.5e-34
WB|WBGene00020837	449	T27A1.5 [Caenorhabditis elegan	0.870	0.523	0.369	1.2e-33
UNIPROTKB|E2RHF1	476	SLC36A1 "Uncharacterized prote	0.844	0.478	0.365	2.5e-33

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 105/245 (42%), Positives = 159/245 (64%)

Query:    28 MYLLCTYAVT-----DLPDT-STRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKP 81
             ++++ T+A+T     D P   S +  +A     PLFF+TV+FAMEGIG V+P+ENSM+KP
Sbjct:   227 IFIVVTFAITLYYMFDEPLVYSDKPLIAKAAHIPLFFATVIFAMEGIGVVMPVENSMRKP 286

Query:    82 GHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVAL 140
              HFLG  GVLNIAM  V+S Y ++G+ GY+++G+  +GSITLNLP+  +  ++ K+L+A+
Sbjct:   287 QHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPEGAWLGDTAKLLMAV 346

Query:   141 SILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIIS 200
             +ILFT+GLQF VP+EI+W +I H+    +HN+   ++R  +I+ +  VAA IPNL P IS
Sbjct:   347 AILFTFGLQFYVPNEILWRKISHKFSPEKHNITQILLRSGIILLSGGVAAAIPNLEPFIS 406

Query:   201 LVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFXXXXXXXXXXXXXTYSSIEEI 260
             LVGA+ FS+LG+F P+ ++ V  +       + + +KN                +SI EI
Sbjct:   407 LVGAVFFSLLGIFVPSFVETVYLWPDRLGVCKWKLVKNIFLGVFSILALVAGAVASINEI 466

Query:   261 IAFYA 265
             I  Y+
Sbjct:   467 IEMYS 471

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 89/235 (37%), Positives = 140/235 (59%)

Query:    34 YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
             Y V DLP    R +V  ++  P FFS  +FAME IG V+P+EN+MK P  FLG  GVL+ 
Sbjct:   263 YLVQDLPPVEERESVV-WSTLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQ 321

Query:    94 AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGLQFGV 152
              M+ V   Y ++G+ GYL+YG  T  SITLNLP + + ++++K+L++L++  T+GLQF V
Sbjct:   322 GMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFV 381

Query:   153 PSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGL 212
               EI+W+ IK +    R  +  Y++R +++   V++A  +P +GP + L+GA CFS+LGL
Sbjct:   382 CLEIIWDGIKEKCK-KRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSILGL 440

Query:   213 FCPAVIDYVTFYDPNKSWYRPRTIKNFXXXXXXXXXXXXXTYSSIEEIIAFYAIN 267
               P VI+ +  ++     Y     KN              T ++I++I+  Y+ N
Sbjct:   441 IFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVFGTQAAIKDIVKAYSNN 495

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 88/195 (45%), Positives = 123/195 (63%)

Query:    33 TYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLN 92
             +Y + DLPD  T   VA +   PL+F T ++A EGIG VLP+EN+M+ P  F G  GVLN
Sbjct:   269 SYMLVDLPDVHTVKPVATWATLPLYFGTAIYAFEGIGVVLPLENNMRTPEDFGGTTGVLN 328

Query:    93 IAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPK-DPFSESIKILVALSILFTYGLQFG 151
               M +V   Y  VG+ GYLKYGE  +GSITLNLP+ D  S+ ++I +A++I  +Y LQF 
Sbjct:   329 TGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDTLSQLVRISMAVAIFLSYTLQFY 388

Query:   152 VPSEIVWERIKHRVPIPR-HNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSML 210
             VP  IV   ++      R  ++   ++R +++  T L+A  IPNLG IISLVGA+  S L
Sbjct:   389 VPVNIVEPFVRSHFDTTRAKDLSATVLRVVLVTFTFLLATCIPNLGSIISLVGAVSSSAL 448

Query:   211 GLFCPAVIDYVTFYD 225
              L  P +I+ +TFY+
Sbjct:   449 ALIAPPIIEVITFYN 463

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 90/241 (37%), Positives = 135/241 (56%)

Query:    30 LLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFG 89
             ++C Y   +   T  +      + FPLFF TVLFA+E IG +LP+EN MK P  F G  G
Sbjct:   225 IICYYIFREPVTTEGKDAFGKPSNFPLFFGTVLFALEAIGVILPLENEMKTPQKFGGSCG 284

Query:    90 VLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPK-DPFSESIKILVALSILFTYGL 148
             VLN++M +++  Y  +G  GYL YG    GSITLN+P+ +  S  +K ++A +I  T+GL
Sbjct:   285 VLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGL 344

Query:   149 QFGVPSEIVW-ERIKHRVPIPRHNMGY-YIMR-GLMIIGTVLVAAIIPNLGPIISLVGAI 205
                V  +I W + +  R+   R+ + + Y +R GL++I T L+A  IPNL   ISL GA+
Sbjct:   345 ACYVAIDITWNDYVAKRLGAQRNALFWEYAVRTGLVLI-TFLLAVAIPNLELFISLFGAL 403

Query:   206 CFSMLGLFCPAVIDYVTFYDPNKSWYRP-RTIKNFXXXXXXXXXXXXXTYSSIEEIIAFY 264
             C S LGL  PA+I   T +   K + +    + NF             TY+S++EI+  +
Sbjct:   404 CLSALGLAFPALIQICTHWYNTKGFAKVWLVLSNFVLIIVGILGLVIGTYTSLKEIVLTF 463

Query:   265 A 265
             +
Sbjct:   464 S 464

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

WB|WBGene00012804 Y43F4B.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 82/232 (35%), Positives = 125/232 (53%)

Query:    34 YAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNI 93
             + ++DL   S+       T  PLFF TV+FA EG+  ++PIEN M+ P  F+   GVLN 
Sbjct:   225 FFLSDLRPISSLPWFGKATDLPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLNS 284

Query:    94 AMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVP 153
             +  VV++ + + G+ GYL  G D K + TLNLP  PF ++IK++    I+ +Y LQF VP
Sbjct:   285 SCLVVLAIFSVTGFYGYLSLGNDVKDTATLNLPMTPFYQTIKLMFVACIMISYPLQFYVP 344

Query:   154 SEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLF 213
              E + + I  ++P+ +  +  YI R   +I T  +A +IP+L   ISL+GA   + + L 
Sbjct:   345 MERIEKWITRKIPVDKQTLYIYIARYSGVILTCAIAELIPHLALFISLIGAFSGASMALL 404

Query:   214 CPAVIDYVTFYDPNKSWYRPRTIKNFXXXXXXXXXXXXXTYSSIEEIIAFYA 265
              P  I+ +T Y  N+       IKN              TYS++ EI   +A
Sbjct:   405 FPPCIELLTSYAKNEL-STGLWIKNIVLLTFAFIGFTTGTYSALIEIAKTFA 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

MGI|MGI:2445299 Slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 90/235 (38%), Positives = 130/235 (55%)

Query:    28 MYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGK 87
             + ++  + V  +PD S    VAP+  +PLFF T +FA EGIG VLP+EN MK    F   
Sbjct:   231 LIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPL- 289

Query:    88 FGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
               +L + MA++   Y  +G  GYL++G + KGSITLNLP     +S+K+L ++ I FTY 
Sbjct:   290 --ILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSIGIFFTYA 347

Query:   148 LQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICF 207
             LQF V +EI+   I  RVP     M    +R  M+  T ++A +IP L  +ISLVG++  
Sbjct:   348 LQFYVAAEIIIPAIVSRVPEHFELMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSVSS 407

Query:   208 SMLGLFCPAVIDYVTFYDPNKSWYRPRTI-KNFXXXXXXXXXXXXXTYSSIEEII 261
             S L L  P +++ VT+Y    S   P T+ K+              TY S+ E+I
Sbjct:   408 SALALIIPPLLEVVTYYGEGIS---PLTVTKDALISILGFVGFVVGTYESLCELI 459

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005280 "hydrogen:amino acid symporter activity" evidence=IDA

GO:0005302 "L-tyrosine transmembrane transporter activity" evidence=IDA

GO:0005764 "lysosome" evidence=ISO;ISA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISO

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=ISO

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA

GO:0015187 "glycine transmembrane transporter activity" evidence=IDA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IDA

GO:0015293 "symporter activity" evidence=IEA

GO:0015804 "neutral amino acid transport" evidence=ISO

GO:0015808 "L-alanine transport" evidence=IDA

GO:0015816 "glycine transport" evidence=IDA

GO:0015824 "proline transport" evidence=IDA

GO:0015992 "proton transport" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0035524 "proline transmembrane transport" evidence=IDA

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 80/237 (33%), Positives = 126/237 (53%)

Query:    30 LLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFG 89
             ++  Y   +LP  S R       + P FF TVLFA+E +G +L IE +M  P  F+G  G
Sbjct:   214 IILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFALEAVGVILAIEENMATPKSFVGPCG 273

Query:    90 VLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPF-SESIKILVALSILFTYGL 148
             +LN  M++V+  Y ++G+ GY KYG +++GSITLN+P+    ++ +K+  A++   +Y L
Sbjct:   274 ILNSGMSIVLGLYVLLGFFGYWKYGNESEGSITLNIPQSEIPAQVVKVFFAITTWISYAL 333

Query:   149 QFGVPSEIVWER-IKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICF 207
             Q  V + I+W++ +  R    R      I R ++++ T   A  IP+L   +SLVG+ C 
Sbjct:   334 QGYVTAHILWDKYLAKRFKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFCL 393

Query:   208 SMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFXXXXXXXXXXXXXTYSSIEEIIAFY 264
             S+LGL  P ++     Y      +R + I N              TY SI +IIA Y
Sbjct:   394 SILGLIFPVLLQICVQYTEGYGPFRIKLIINLLLLCFGIFGGVVGTYVSILDIIAVY 450

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

RGD|619801 Slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 91/236 (38%), Positives = 130/236 (55%)

Query:    28 MYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGK 87
             + ++  + V  +PD S    VAP+  +PLFF T +FA EGIG VLP+EN MK    F   
Sbjct:   231 LIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPL- 289

Query:    88 FGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
               +L + MA++   Y  +G  GYL++G D KGSITLNLP     +S+K+L ++ I FTY 
Sbjct:   290 --ILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLLYSIGIFFTYA 347

Query:   148 LQFGVPSEIVWERIKHRVPIPRHNMGYYIM-RGLMIIGTVLVAAIIPNLGPIISLVGAIC 206
             LQF V +EI+   I  RVP  R  +   +  R  M+  T ++A +IP L  +ISLVG++ 
Sbjct:   348 LQFYVAAEIIIPAIVSRVP-ERFELVVDLSARTAMVCVTCVLAVLIPRLDLVISLVGSVS 406

Query:   207 FSMLGLFCPAVIDYVTFYDPNKSWYRPRTI-KNFXXXXXXXXXXXXXTYSSIEEII 261
              S L L  P +++  T+Y    S   P TI K+              TY S+ E+I
Sbjct:   407 SSALALIIPPLLEVTTYYGEGIS---PLTITKDALISILGFVGFVVGTYESLWELI 459

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005280 "hydrogen:amino acid symporter activity" evidence=ISO

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=NAS;IDA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA;ISO

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA;ISO

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA;ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0015808 "L-alanine transport" evidence=ISO

GO:0015816 "glycine transport" evidence=ISO

GO:0015824 "proline transport" evidence=ISO

GO:0015992 "proton transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0035524 "proline transmembrane transport" evidence=ISO

GO:0005302 "L-tyrosine transmembrane transporter activity" evidence=ISO

WB|WBGene00020837 T27A1.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 91/246 (36%), Positives = 135/246 (54%)

Query:    26 HFMYLLCTYAV-TDL-PDTSTRHNVAPF---TQFPLFFSTVLFAMEGIGTVLPIENSMKK 80
             +F+Y++    V  DL  D     ++  F      PLFF TV+FA EG+  VLPIEN M +
Sbjct:   202 NFVYIIAVVIVLADLFSDWQPLDSLPAFGAVENLPLFFGTVMFAFEGVAVVLPIENQMNE 261

Query:    81 PGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVAL 140
             P HF+   GVLN +  +V+  Y  VG+ G+L+YG D K ++TLNLP+ PF ++IK++  L
Sbjct:   262 PIHFITPNGVLNTSCILVLLVYMTVGFFGFLRYGNDIKDTLTLNLPQTPFYQAIKVMFVL 321

Query:   141 SILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIIS 200
              IL +Y LQF VP E V + IK +V   +     Y +R   ++ T  +A +IP+L   IS
Sbjct:   322 CILVSYPLQFYVPMERVEKWIKRKVVEAKQEPMIYAIRFGGVLLTCAMAQLIPHLALFIS 381

Query:   201 LVGAICFSMLGLFCPAVIDYVTFYDPNK--SWYRPRTIKNFXXXXXXXXXXXXXTYSSIE 258
             LVG++  + L L  P +I+ +  Y   +   W     I+N              TY+S+ 
Sbjct:   382 LVGSVAGTSLTLVFPPLIELLCSYSKQELTKWV---WIRNIGLMAFAMVGFTTGTYASMV 438

Query:   259 EII-AF 263
             +II AF
Sbjct:   439 QIIEAF 444

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 86/235 (36%), Positives = 131/235 (55%)

Query:    28 MYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGK 87
             + +L  + V ++PD S    VA +  +PLFF T +FA EGIG VLP+EN MK P  F   
Sbjct:   232 LVMLYQFIVQNIPDPSHLPLVASWKTYPLFFGTAIFAFEGIGMVLPLENKMKDPQKFPL- 290

Query:    88 FGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYG 147
               +L + M ++ + Y  +G  GYL++G + +GSITLNLP     +S+K+L ++ I FTY 
Sbjct:   291 --ILYMGMTIITALYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYA 348

Query:   148 LQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICF 207
             LQF VP+EI+      RVP     +    +R +++  T ++A +IP L  +ISLVG++  
Sbjct:   349 LQFYVPAEIIIPFFVSRVPEHWELVVDLFVRTVLVCLTCVLAILIPRLDLVISLVGSVSS 408

Query:   208 SMLGLFCPAVIDYVTFYDPNKSWYRPRTI-KNFXXXXXXXXXXXXXTYSSIEEII 261
             S L L  P +++  T+Y    S   P TI K+              TY ++ E+I
Sbjct:   409 SALALIIPPLLEITTYYSEGMS---PLTIAKDALISILGFVGFVVGTYEALYELI 460

GO:0015992 "proton transport" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	270
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-34
PTZ00206	467	PTZ00206, PTZ00206, amino acid transporter; Provis	3e-04

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  126 bits (319), Expect = 6e-34
 Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 51  FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGY 110
             +  L    ++FA EG   +LPI+N+MK P  F     VL  A+ +V   Y +VG  GY
Sbjct: 192 LARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGY 251

Query: 111 LKYGEDTKGSITLNLPK-DPFSESIKILVALSILFTYGLQFGVPSEIV----WERIKHRV 165
           L +G + KG+I LNLPK D   +   +L+ L +L +Y LQ     +IV    + +     
Sbjct: 252 LAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGK 311

Query: 166 PIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225
             P+  +   ++R  +++ T L+A  +P LG  +SLVGA   + L    P +        
Sbjct: 312 HNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKT 371

Query: 226 PNKS--WYRPRTIKNFIIILISLGALISGTYSSI 257
             KS        I + I I+I L  +  G    I
Sbjct: 372 KKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 32/215 (14%)

Query: 64  AMEGIGT--------VLPIENSMKKPGHFLGKFGVL-NIAMAVVISFYGMVGYCGYLKYG 114
           A+EG+G         +   E  M      +GKF +   IAM +  + Y +  + GY+ +G
Sbjct: 258 AIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFG 317

Query: 115 EDTKGSITLNLPKDPFSES------IKILVALSI---LFTYGLQFGVPSEIVWERIKHRV 165
            +  GS+ L    DP +E       + +LV L +   L     +  +   I W+  K  V
Sbjct: 318 RNVTGSVLLMY--DPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARK--V 373

Query: 166 PIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYD 225
              +H +    +  +M+    L    IP +  ++   G+I   +LG   PA++     Y 
Sbjct: 374 AFWKHCIAVVTLSVVML----LCGLFIPKINTVLGFAGSISGGLLGFILPALL---FMYS 426

Query: 226 PNKSWYRP---RTIKNFIIILISLGALISGTYSSI 257
              +W +      I  +++++  + A++ GT ++I
Sbjct: 427 GGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATI 461

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG1304|consensus	449		100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG4303|consensus	524		99.97
KOG1303|consensus	437		99.97
KOG1305|consensus	411		99.96
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.62
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.93
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.92
PRK15132	403	tyrosine transporter TyrP; Provisional	98.69
PRK10483	414	tryptophan permease; Provisional	98.42
PRK09664	415	tryptophan permease TnaB; Provisional	98.25
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.2
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.08
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.96
PRK10746	461	putative transport protein YifK; Provisional	97.78
PRK10249	458	phenylalanine transporter; Provisional	97.77
PRK10655	438	potE putrescine transporter; Provisional	97.75
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.74
PRK10644	445	arginine:agmatin antiporter; Provisional	97.66
TIGR00909	429	2A0306 amino acid transporter.	97.63
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.59
PRK15049	499	L-asparagine permease; Provisional	97.49
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.48
PRK11021	410	putative transporter; Provisional	97.47
PRK11387	471	S-methylmethionine transporter; Provisional	97.46
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.45
TIGR00913	478	2A0310 amino acid permease (yeast).	97.42
PRK10836	489	lysine transporter; Provisional	97.38
KOG1287|consensus	479		97.34
PRK10580	457	proY putative proline-specific permease; Provision	97.26
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.23
PRK10238	456	aromatic amino acid transporter; Provisional	97.22
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.19
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.16
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.12
TIGR00911	501	2A0308 L-type amino acid transporter.	97.12
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.12
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.07
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.05
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.01
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.88
TIGR00930	953	2a30 K-Cl cotransporter.	96.84
PRK15238	496	inner membrane transporter YjeM; Provisional	96.66
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.21
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.16
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.74
KOG1286|consensus	554		94.91
TIGR00912	359	2A0309 spore germination protein (amino acid perme	94.27
COG0833	541	LysP Amino acid transporters [Amino acid transport	93.16
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	87.92
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	87.85

>KOG1304|consensus

Probab=100.00  E-value=1.4e-47  Score=347.55  Aligned_cols=250  Identities=42%  Similarity=0.704  Sum_probs=233.9

Q ss_pred             HHHHhhcchh------hhhhH-hhhheeeeeecccCCCCCCCCCCCCCCchhHHHHHHHHHhhcccccccccccccCCCC
Q psy1701          11 EFWIDARGFR------DNHSG-HFMYLLCTYAVTDLPDTSTRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH   83 (270)
Q Consensus        11 ~~w~~~~~~~------~~~~~-~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~   83 (270)
                      -.|+|+.+.+      +|... +++.++++|.+.+.++.++.+...++++++.++|+.+|||+|+++++|++|+||+|++
T Consensus       193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~  272 (449)
T KOG1304|consen  193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK  272 (449)
T ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence            4577776655      33333 5778899999999999999999989999999999999999999999999999999999


Q ss_pred             CCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh
Q psy1701          84 FLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH  163 (270)
Q Consensus        84 ~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~  163 (270)
                      |+...++++.++.++.++|..+|++||++|||++++.|++|+|++++.+.+|+++++.+++|||+|+||+.+++|+.+.+
T Consensus       273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~  352 (449)
T KOG1304|consen  273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK  352 (449)
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence            99777799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHH
Q psy1701         164 RVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIIL  243 (270)
Q Consensus       164 ~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~  243 (270)
                      +.+++++++..+.+|..++++++++|..+||++++++++||++++.+++++|+++|++.++++.++..+|+.++|.++++
T Consensus       353 k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~  432 (449)
T KOG1304|consen  353 KFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIV  432 (449)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHH
Confidence            88877788999999999999999999999999999999999999999999999999999999877778899999999999


Q ss_pred             HHHHHhHHHHHHHHHHH
Q psy1701         244 ISLGALISGTYSSIEEI  260 (270)
Q Consensus       244 ~Gv~~~v~gt~~~i~~l  260 (270)
                      +|+++++.|||.+++++
T Consensus       433 ~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  433 FGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHhhhhhcC
Confidence            99999999999999864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1e-35  Score=278.75  Aligned_cols=209  Identities=17%  Similarity=0.182  Sum_probs=179.6

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccC-CCc-
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNL-PKD-  128 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~-~~~-  128 (270)
                      ..+.+.++|+++|||.||.+.+|+++|||||+. +|+.+++..++.++.++|..+|++||++||+++++++++|+ |.+ 
T Consensus       255 ~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~-~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~  333 (467)
T PTZ00206        255 GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV-GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE  333 (467)
T ss_pred             chHHHhhhhHHHhhhhhhhhhHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence            346889999999999999999999999999885 56667899999999999999999999999999999999999 554 


Q ss_pred             hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHH
Q psy1701         129 PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFS  208 (270)
Q Consensus       129 ~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~  208 (270)
                      +...++++++.+.++++||++.+|+|+.+++.+..+. ++.+.+++...+..+...+.++|+.+|+++.+++++||++++
T Consensus       334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~  412 (467)
T PTZ00206        334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG  412 (467)
T ss_pred             chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence            8888999999999999999999999999988874322 234456676777777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1701         209 MLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEII  261 (270)
Q Consensus       209 ~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li  261 (270)
                      .++|++|+++|++....+.++..+++++.+++++++|++..+.|||+++.+.+
T Consensus       413 ~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        413 LLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999984311111123455688999999999999999999998875

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.1e-33  Score=264.63  Aligned_cols=212  Identities=17%  Similarity=0.214  Sum_probs=181.5

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccc--cccccCCC
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKG--SITLNLPK  127 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~--~il~n~~~  127 (270)
                      ++..++.++++++|||++|+.+||+++|||||++|++   ++..+...+.++|..+|+.||++|||++++  +.+.|+|+
T Consensus       231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~  307 (473)
T PLN03074        231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR  307 (473)
T ss_pred             hHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence            3445666777899999999999999999999999988   778889999999999999999999999764  56777987


Q ss_pred             chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHH
Q psy1701         128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICF  207 (270)
Q Consensus       128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~  207 (270)
                      +....+++++++++++.+||+++.|..+..|+.+..+  ++++...|..+|..+++.++++|+.+|+|+++++++||+++
T Consensus       308 ~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~  385 (473)
T PLN03074        308 SGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLV  385 (473)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            7667899999999999999999999988877765432  34556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCC--CC--------CCc--hhhHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhCC
Q psy1701         208 SMLGLFCPAVIDYVTFYDPN--KS--------WYR--PRTIKNFIIILI-SLGALISGTYSSIEEIIAFYAI  266 (270)
Q Consensus       208 ~~l~filP~l~~l~~~~~~~--~~--------~~~--~~~~~~~~i~~~-Gv~~~v~gt~~~i~~li~~~~~  266 (270)
                      +.+++++|+++|++.++++.  ++        ..+  |+.++|++++++ |+++++.|+|.+++++++++++
T Consensus       386 s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        386 SFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence            99999999999999776531  11        123  346899999975 6666799999999999999987

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=4.3e-34  Score=263.39  Aligned_cols=209  Identities=32%  Similarity=0.517  Sum_probs=187.6

Q ss_pred             CCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc
Q psy1701          49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD  128 (270)
Q Consensus        49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~  128 (270)
                      .++.+++.++|+++|||.||++++|+++|||+|++++|..++...++.+++++|..+|..||++||+++++|+++|+|++
T Consensus       189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~  268 (409)
T PF01490_consen  189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND  268 (409)
T ss_pred             chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc
Confidence            45678999999999999999999999999999999886677999999999999999999999999999999999999988


Q ss_pred             -hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh--------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCchhhH
Q psy1701         129 -PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR--------VPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGPII  199 (270)
Q Consensus       129 -~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~--------~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~  199 (270)
                       +...++++++.++++.+||++.+|+++.+++.+.++        .+++.++++|..+|+.++..++++|+.+|++++++
T Consensus       269 ~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~  348 (409)
T PF01490_consen  269 DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDII  348 (409)
T ss_pred             ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhh
Confidence             799999999999999999999999999999998653        12234567899999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchh--hHHHHHHHHHHHHHhHHHHHHHH
Q psy1701         200 SLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPR--TIKNFIIILISLGALISGTYSSI  257 (270)
Q Consensus       200 ~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~--~~~~~~i~~~Gv~~~v~gt~~~i  257 (270)
                      +++|+++++.++|++|+++|++.+++++.+..++.  ...++.++++|+++++.|+|+++
T Consensus       349 ~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  349 SLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             cccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            99999999999999999999999887643332222  25688999999999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303|consensus

Probab=99.97  E-value=7.3e-34  Score=246.29  Aligned_cols=251  Identities=22%  Similarity=0.305  Sum_probs=221.7

Q ss_pred             ccchhhHHHHhhcchhhhhhHhhhheeeeeecccCCCC--CCCCCCCCCCchhHHHHHHHHHhhcccccccccccccCCC
Q psy1701           5 TSVNFQEFWIDARGFRDNHSGHFMYLLCTYAVTDLPDT--STRHNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPG   82 (270)
Q Consensus         5 ~~~~~~~~w~~~~~~~~~~~~~~~~~i~~y~~~~~~~~--~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~   82 (270)
                      |-|+-.++|....++.-|+      +++.|+.....++  ++....-|..+++.++|+++|+|..|.-.|+++.+|++|+
T Consensus       259 k~VS~lSf~ct~sH~viN~------i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps  332 (524)
T KOG4303|consen  259 KIVSRLSFFCTISHLVINL------IMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS  332 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChh
Confidence            4577788999988888777      4556777766654  4444445677899999999999999999999999999999


Q ss_pred             CCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh
Q psy1701          83 HFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK  162 (270)
Q Consensus        83 ~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~  162 (270)
                      +|..   .+.|+-+...++-..+|.+||++||++++..|++|+|+..+...+++.+.+..++|||+.+|.+.+.+|+.++
T Consensus       333 ~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF  409 (524)
T KOG4303|consen  333 QFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLF  409 (524)
T ss_pred             Hhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhh
Confidence            9987   7899999999999999999999999999999999999988999999999999999999999999999999987


Q ss_pred             hhCCCC----------CcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy1701         163 HRVPIP----------RHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR  232 (270)
Q Consensus       163 ~~~~~~----------~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~  232 (270)
                      ...++.          +-+-+.+.+|++++..+.++|+.+|++..+++++|+++++.++|+.|++||+++.++.   ...
T Consensus       410 ~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~---L~~  486 (524)
T KOG4303|consen  410 LGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT---LNN  486 (524)
T ss_pred             cCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh---hhh
Confidence            655431          2234567899999999999999999999999999999999999999999999998764   334


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Q psy1701         233 PRTIKNFIIILISLGALISGTYSSIEEIIAFYAIN  267 (270)
Q Consensus       233 ~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~~~~~~  267 (270)
                      .++.++..++++|....+.|.|.+..+++++++.+
T Consensus       487 ~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~  521 (524)
T KOG4303|consen  487 FEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSA  521 (524)
T ss_pred             HHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhcc
Confidence            56889999999999999999999999999998865

>KOG1303|consensus

Probab=99.97  E-value=3.7e-30  Score=236.77  Aligned_cols=202  Identities=23%  Similarity=0.331  Sum_probs=180.1

Q ss_pred             hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCC-CchHHHH
Q psy1701          55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLP-KDPFSES  133 (270)
Q Consensus        55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~-~~~~~~~  133 (270)
                      ++++|++.|+|++|+..|+|+++||+|++|+|   ++..+..+++.+|+.+++.||++|||+++|+++.|++ ..++...
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~  307 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIAL  307 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHH
Confidence            79999999999999999999999999999887   8999999999999999999999999999999999997 5599999


Q ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCC--CCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHH
Q psy1701         134 IKILVALSILFTYGLQFGVPSEIVWERIKHRVPI--PRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLG  211 (270)
Q Consensus       134 ~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~--~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~  211 (270)
                      +++++.++++.++++...|..+.+|+....+.++  ++..+.|.+.|..++..++++|+.+|+|+++++++||+...+++
T Consensus       308 ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t  387 (437)
T KOG1303|consen  308 ANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLT  387 (437)
T ss_pred             HHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988655441  24567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCchhhHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q psy1701         212 LFCPAVIDYVTFYDPNKSWYRPRTIKNFII-ILISLGALISGTYSSIEEIIA  262 (270)
Q Consensus       212 filP~l~~l~~~~~~~~~~~~~~~~~~~~i-~~~Gv~~~v~gt~~~i~~li~  262 (270)
                      +++|+++|+..++.++.   ..+...++.+ +++|++.++.+...++.+++.
T Consensus       388 ~ilP~~~yl~~~k~~~~---s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  388 FILPCLMYLLIKKPKRF---SPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHHHHHHHhhhhhhh---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999765422   2234455555 788888888888888887765

>KOG1305|consensus

Probab=99.96  E-value=5.5e-29  Score=227.81  Aligned_cols=206  Identities=21%  Similarity=0.288  Sum_probs=185.2

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc--h
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD--P  129 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~--~  129 (270)
                      .+++.++++++|||.||.|+.|+++|||+|++ +++.++...+...+.++|..+|.+||++|||++++|++.+++++  .
T Consensus       194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~  272 (411)
T KOG1305|consen  194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNN  272 (411)
T ss_pred             hhhhhhhhhhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccch
Confidence            57999999999999999999999999999996 77788999999999999999999999999999999999999876  2


Q ss_pred             -----HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCC--CCcchhHHHHHHHHHHHHHHHHHhcCCchhhHHHh
Q psy1701         130 -----FSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPI--PRHNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLV  202 (270)
Q Consensus       130 -----~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~--~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lv  202 (270)
                           ....+|..+..+.+.++|++.+|+|..+.+.+.++.++  +.++.++.+++..++..+.+.|+.+|+++++++++
T Consensus       273 ~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~v  352 (411)
T KOG1305|consen  273 LLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFV  352 (411)
T ss_pred             hHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence                 24789999999999999999999999988887665543  25567889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1701         203 GAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSSIEEIIAF  263 (270)
Q Consensus       203 Gs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~i~~li~~  263 (270)
                      ||+++..++|++|+++|++..++     +.+++...+...++|+...++|+...+.++..+
T Consensus       353 GAT~~~~i~FI~P~~~yl~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  353 GATSSTSISFILPALYYLKASKK-----KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             hhhhhhhhHHHHHHHhhheeecc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998865     234567778889999999999999988888764

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.62  E-value=4.3e-15  Score=137.50  Aligned_cols=204  Identities=15%  Similarity=0.121  Sum_probs=148.5

Q ss_pred             CCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcccccccccCCCc
Q psy1701          49 APFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGSITLNLPKD  128 (270)
Q Consensus        49 ~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~il~n~~~~  128 (270)
                      .++.++..++|+++|||+||+|++++.+|||++++ ++.+++...+..+..++|..+++.+|..+|+++.++++++.+++
T Consensus       190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~-~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~  268 (415)
T COG0814         190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK-KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN  268 (415)
T ss_pred             hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch
Confidence            45778889999999999999999999999998886 34556999999999999999999999999999999999999887


Q ss_pred             hHHHHHHHHHHHHHHHHhhcchhhHHHHHH--------------HHHhh-h-CCCCCcchh--HHHHHHHHHHHHHHHHH
Q psy1701         129 PFSESIKILVALSILFTYGLQFGVPSEIVW--------------ERIKH-R-VPIPRHNMG--YYIMRGLMIIGTVLVAA  190 (270)
Q Consensus       129 ~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~--------------~~l~~-~-~~~~~~~~~--~~~~r~~~~~~~~~lAi  190 (270)
                      ......+.....+...++|.+.++.+.+.-              +.+.+ + .+.++..+.  .....+..+......+.
T Consensus       269 ~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~  348 (415)
T COG0814         269 ISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAI  348 (415)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444444455666666666654422              22221 1 111222222  33445555566667788


Q ss_pred             hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHH
Q psy1701         191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPRTIKNFIIILISLGALISGTYSS  256 (270)
Q Consensus       191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~~~Gv~~~v~gt~~~  256 (270)
                      ..|..+.+++.+|+.....+.++.|...+.+....+.   .+..+..+++++++|+..+..-.+..
T Consensus       349 ~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~---~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         349 ALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV---YGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee---cCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988866654331   11112467888888888877766644

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.93  E-value=2.2e-08  Score=92.27  Aligned_cols=173  Identities=13%  Similarity=0.084  Sum_probs=124.5

Q ss_pred             CCCCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh--hHHH---------HhhcCc
Q psy1701          48 VAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG--YCGY---------LKYGED  116 (270)
Q Consensus        48 ~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g--~~gY---------~~fG~~  116 (270)
                      ..++.....++|+.++||+.|+.+|++.+.+++..  +|.++++..+..+..++|+..-  +.|-         ..-|++
T Consensus       180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~--~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~  257 (394)
T PF03222_consen  180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP--KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN  257 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence            45778888999999999999999999999988443  3344588888888888888653  2331         111222


Q ss_pred             ccc--cccccCCCc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcC
Q psy1701         117 TKG--SITLNLPKD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIP  193 (270)
Q Consensus       117 ~~~--~il~n~~~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip  193 (270)
                      +.+  ..+.+..++ .......+.-.+.+..||-=...-.+|.+.+.++.    +++...|............++|...|
T Consensus       258 ~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~----~~~~~~r~~~~~ltf~ppl~~a~~~p  333 (394)
T PF03222_consen  258 VSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL----KNNSSGRLKTWLLTFLPPLIFALLFP  333 (394)
T ss_pred             hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CccccchHHHHHHHHHhHHHHHHHCc
Confidence            211  223333333 66777788888888888877777788888776643    22223444455666777888899888


Q ss_pred             C-chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCC
Q psy1701         194 N-LGPIISLVGAICFSMLGLFCPAVIDYVTFYDPN  227 (270)
Q Consensus       194 ~-~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~  227 (270)
                      + +-..+++.| ...+.+..++|+++.++.+++++
T Consensus       334 ~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  334 NGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            8 888999999 88999999999999999987654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.92  E-value=1.7e-08  Score=92.56  Aligned_cols=170  Identities=9%  Similarity=0.040  Sum_probs=124.4

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---------c
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---------G  119 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---------~  119 (270)
                      ++.++..+++...++|++|.+++++.++++|++  |+.+++...+..++.++|+.+........+.+ .+         +
T Consensus       176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~--k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~  253 (381)
T TIGR00837       176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV--KKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD  253 (381)
T ss_pred             cHHHHHHHHHHHHHHHHcccccHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence            455678889999999999999999999998663  44455899999999999998865544444322 11         1


Q ss_pred             c---cccc-CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCc
Q psy1701         120 S---ITLN-LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNL  195 (270)
Q Consensus       120 ~---il~n-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~  195 (270)
                      +   ...+ .++.+...++.+.-.+.+..|+.-.....+|.+.+.+.+. ++++   +|.....+......++|...|+.
T Consensus       254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~-~~~~---~~~~~~~~~~~~pl~~a~~~p~~  329 (381)
T TIGR00837       254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD-DSKK---GRFKTGLLTFLPPLVFALFYPEG  329 (381)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccC---CCchhhhhhHHhHHHHHHHhhHH
Confidence            1   1111 2223566777778888888888887778888866666542 2222   24556677778888999999997


Q ss_pred             h-hhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         196 G-PIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       196 ~-~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      . ..++..| +..+.+.+++|++++++.|+++
T Consensus       330 ~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~  360 (381)
T TIGR00837       330 FLYAIGYAG-LAATIWAVIIPALLAWKARKKF  360 (381)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence            7 8999999 8889999999999999987653

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.69  E-value=2.3e-07  Score=85.60  Aligned_cols=192  Identities=11%  Similarity=0.057  Sum_probs=132.8

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-----ccc-----ccc
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-----TKG-----SIT  122 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-----~~~-----~il  122 (270)
                      -...++|++.+||+.|+++|++.+.+++..  +|.+++...+..+..++|+..=......-+.+     .++     +++
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~--~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNI--RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            378999999999999999999999987443  44456888888888888886544444333222     111     222


Q ss_pred             ccCC---Cc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-chh
Q psy1701         123 LNLP---KD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN-LGP  197 (270)
Q Consensus       123 ~n~~---~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~-~~~  197 (270)
                      ..+.   ++ +....+.+.-.+.+..||-=...-..|.+.+.++++.+    ...|..........+.++|..-|+ +..
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~F~~  335 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRGFVM  335 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHHHHH
Confidence            2222   22 66677777777888888877777778888777644221    223566677888888999999998 788


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc--hhhHHHHHHHHHHHHHhHH
Q psy1701         198 IISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR--PRTIKNFIIILISLGALIS  251 (270)
Q Consensus       198 v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~~i~~~Gv~~~v~  251 (270)
                      .++..|. ..+.+.+++|+++-++.+++++.+..|  -.+..+++.+.+|++..+.
T Consensus       336 al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        336 ALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence            8888876 579999999999999988653111111  1345566677777665544

>PRK10483 tryptophan permease; Provisional

Probab=98.42  E-value=5.9e-06  Score=76.31  Aligned_cols=167  Identities=11%  Similarity=0.070  Sum_probs=117.9

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHh-----------hcCcccc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLK-----------YGEDTKG  119 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~-----------fG~~~~~  119 (270)
                      +.....+++++++||+.|+++|++.+.+++..  +|.++++..+..+..++|+..=...-..           -|++++ 
T Consensus       191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-  267 (414)
T PRK10483        191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDP--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-  267 (414)
T ss_pred             HHHHHHHHHHHHhhccCCCcchHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-
Confidence            34577999999999999999999999887433  2445689999999999998732222211           222221 


Q ss_pred             cccccC---CCc-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-
Q psy1701         120 SITLNL---PKD-PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN-  194 (270)
Q Consensus       120 ~il~n~---~~~-~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~-  194 (270)
                      ..+..+   .++ .......+.-.+.+..||-=...-..|.+.+.++.+.    +...|...-........++|...|+ 
T Consensus       268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~----~~~~r~~~~~ltflPPl~~al~~P~~  343 (414)
T PRK10483        268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD----SAMGRFKTALLTFLPPVVGGLLFPNG  343 (414)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ccccceeeehhhHhhHHHHHHHhHHH
Confidence            111112   222 5566777777788888887776777888777665322    1223444555677888999999999 


Q ss_pred             chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                      |-.-++.-|.. ...+.-++|+++-++.|++
T Consensus       344 Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        344 FLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            88899999876 6788889999999999865

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.25  E-value=4.5e-05  Score=70.51  Aligned_cols=192  Identities=11%  Similarity=0.061  Sum_probs=124.3

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh--hHH---------HHhhcCcccccc
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG--YCG---------YLKYGEDTKGSI  121 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g--~~g---------Y~~fG~~~~~~i  121 (270)
                      ....++|++.+||+.|+++|++.+.+++..  ++.++.+.....+..++|+.-=  ..|         -..-|+++++.+
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~--~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~  271 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKRK--DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV  271 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH
Confidence            377799999999999999999999987443  2223466777777777875331  122         112233332211


Q ss_pred             ---cccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-chh
Q psy1701         122 ---TLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN-LGP  197 (270)
Q Consensus       122 ---l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~-~~~  197 (270)
                         ..+.+..+......+...+.+..||-=...-..|.+.+.++.+.    +...|...-........++|...|+ |-.
T Consensus       272 ~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~----~~~~r~~~~~ltflPPl~~al~~P~gFl~  347 (415)
T PRK09664        272 KSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN----SHGGRFKTVLLTFLPPALLYLIFPNGFIY  347 (415)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ccccceeeehhhHhhhHHHHHHhhHHHHH
Confidence               12222236667777777888888887666677787777664322    1223444555677888999999999 888


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCc--hhhHHHHHHHHHHHHHhHH
Q psy1701         198 IISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYR--PRTIKNFIIILISLGALIS  251 (270)
Q Consensus       198 v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~~i~~~Gv~~~v~  251 (270)
                      -++.-|.. .+.+.-++|+++-++.|++...+..|  -.+..-.+.+.+|++..+.
T Consensus       348 AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~  402 (415)
T PRK09664        348 GIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC  402 (415)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence            99999886 67888899999999999652211111  1233444555556554443

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.20  E-value=3.1e-05  Score=71.83  Aligned_cols=196  Identities=14%  Similarity=0.062  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHHhhcccccccccccccCC-C-----C--CCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc-----ccc
Q psy1701          54 FPLFFSTVLFAMEGIGTVLPIENSMKKP-G-----H--FLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT-----KGS  120 (270)
Q Consensus        54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p-~-----~--~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~-----~~~  120 (270)
                      ...++|+++|||+.|+.+++....+|+. +     +  .+|.++++..+..+..++|+..-+..-..-+++.     ++|
T Consensus       211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn  290 (443)
T PRK13629        211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQN  290 (443)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence            6788899999999999999999885432 1     2  3566678889988888888877665555544321     112


Q ss_pred             c--c----ccCCC---------chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh---hCCCC--CcchhHHHHHHH
Q psy1701         121 I--T----LNLPK---------DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH---RVPIP--RHNMGYYIMRGL  180 (270)
Q Consensus       121 i--l----~n~~~---------~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~---~~~~~--~~~~~~~~~r~~  180 (270)
                      +  +    +.+++         ........+...+.+..||-=...-.+|.+...+.+   +.+++  +.+..+....++
T Consensus       291 ~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~  370 (443)
T PRK13629        291 IPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIF  370 (443)
T ss_pred             CcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHH
Confidence            2  1    11232         123445556666677788777777888888877732   22222  233446677788


Q ss_pred             HHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCchh-hHHHHHHHHHHHHHhHHHHH
Q psy1701         181 MIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPNKSWYRPR-TIKNFIIILISLGALISGTY  254 (270)
Q Consensus       181 ~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~-~~~~~~i~~~Gv~~~v~gt~  254 (270)
                      +...++.+|+.=|++=.+++-+|+--...+.|++|...-+|.-.-+     +++ +..|+++.+.|++....-.|
T Consensus       371 ~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~-----~yr~~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        371 IMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLA-----KYRGRLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHH-----HhCCCchhHHHHHHHHHHHHHHHH
Confidence            8889999999999999999977777779999999998877654221     111 23478888888776554444

>TIGR00814 stp serine transporter

Probab=98.08  E-value=2.4e-05  Score=72.24  Aligned_cols=173  Identities=12%  Similarity=0.044  Sum_probs=120.1

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccc----cCCC-CCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc-----ccc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSM----KKPG-HFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT-----KGS  120 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m----~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~-----~~~  120 (270)
                      +.+...+.+..++||.+|+++++...+.    ++|+ +.+|.+++...+..+..++|+..-...-...+.+.     ++|
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n  264 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence            4568899999999999999999998444    3232 12444568888888888888877665555554331     112


Q ss_pred             c--cc----cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CC-C--CCcchhHHHHHHHHHHHHHHHHH
Q psy1701         121 I--TL----NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VP-I--PRHNMGYYIMRGLMIIGTVLVAA  190 (270)
Q Consensus       121 i--l~----n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~-~--~~~~~~~~~~r~~~~~~~~~lAi  190 (270)
                      +  +.    ..+.........+.-.+.+..||--...-.+|.+.+.+.+. .+ +  .+++..+.....+....++.+|.
T Consensus       265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  344 (397)
T TIGR00814       265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAY  344 (397)
T ss_pred             cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            1  11    12222555666667777888888888888899888876321 11 1  12334456777788888999999


Q ss_pred             hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy1701         191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTF  223 (270)
Q Consensus       191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~  223 (270)
                      .=|++=.+++-+|+--.+.+.|++|...-.|.-
T Consensus       345 ~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~  377 (397)
T TIGR00814       345 INPSILSFIEALGGPIIAMILFLMPMYAIYKVP  377 (397)
T ss_pred             hCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence            999999999966666678999999998877653

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.96  E-value=0.0012  Score=62.48  Aligned_cols=163  Identities=7%  Similarity=-0.003  Sum_probs=83.3

Q ss_pred             HHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc--ccc-------cccCCCch
Q psy1701          60 TVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK--GSI-------TLNLPKDP  129 (270)
Q Consensus        60 i~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~--~~i-------l~n~~~~~  129 (270)
                      ...|+|.|--.....-+|+|||+|  ..++++..+...+.++|......-...-+++ ..  ++.       .......+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK--NYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSW  279 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchH
Confidence            457899999999888999999984  2334889999999999987665433333322 11  111       01111112


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHHHHHHH-HHHHHHHHHhcCCchhhHH
Q psy1701         130 FSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYIMRGLM-IIGTVLVAAIIPNLGPIIS  200 (270)
Q Consensus       130 ~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~~r~~~-~~~~~~lAi~ip~~~~v~~  200 (270)
                      ...+..+...++.+.+.--.+....+.+...-        ..+.+ |++.+.+-..-... ..+..++....|+.++.++
T Consensus       280 ~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~  358 (474)
T TIGR03813       280 LGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQ  358 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            23333333333333332222222223332221        11222 23333332222222 2222333445677666666


Q ss_pred             HhhhhHH--HHHHHHHHHHHHHHHhcC
Q psy1701         201 LVGAICF--SMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       201 lvGs~~~--~~l~filP~l~~l~~~~~  225 (270)
                      .+.+.++  ..+.|+++.+..++++++
T Consensus       359 ~l~~~~~~~~~i~y~~~~~a~i~lr~~  385 (474)
T TIGR03813       359 ILSQLTVILYLVMYLLMFASAIYLRYS  385 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5554433  456788888887777654

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10746 putative transport protein YifK; Provisional

Probab=97.78  E-value=0.0022  Score=60.50  Aligned_cols=173  Identities=12%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-ccc---ccc---cc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTK---GSI---TL  123 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~---~~i---l~  123 (270)
                      +.++..++....|+|.|--.+...-.|+|||+|  ..+++...+.....++|.......-..... +.+   ++.   ..
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k--~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~  276 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQV--TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA  276 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH
Confidence            456778889999999999999999999999983  334477777777778887754333222221 111   111   11


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhH-HHHHHHHHHHHHHHHHhcCC
Q psy1701         124 NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGY-YIMRGLMIIGTVLVAAIIPN  194 (270)
Q Consensus       124 n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~-~~~r~~~~~~~~~lAi~ip~  194 (270)
                      +........+...+..+..+.+.--.++...+.+...-++        +.+ +++.+.+ +.+.....++...+....|+
T Consensus       277 ~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~  355 (461)
T PRK10746        277 KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPN  355 (461)
T ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccC
Confidence            1111223344444555555554444445555555544221        222 2222322 22222222233334445666


Q ss_pred             chhhHHHhhhhHH--HHHHHHHHHHHHHHHhcCC
Q psy1701         195 LGPIISLVGAICF--SMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       195 ~~~v~~lvGs~~~--~~l~filP~l~~l~~~~~~  226 (270)
                      -+.+++.+-+.++  ..+.++++++.+++.++++
T Consensus       356 ~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~  389 (461)
T PRK10746        356 PQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH  389 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666665544433  5789999999999988653

>PRK10249 phenylalanine transporter; Provisional

Probab=97.77  E-value=0.0017  Score=61.17  Aligned_cols=170  Identities=15%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---cccc---
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---GSIT---  122 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---~~il---  122 (270)
                      .+.++..++....|+|.|--.+...-.|+|||++  ..++++..+.....++|...........+++ ..   ++..   
T Consensus       207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k--~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~  284 (458)
T PRK10249        207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPEK--SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIF  284 (458)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh--HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHH
Confidence            3455678889999999999999999999999984  3345888888888999977544333222221 10   1111   


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhH-HHHHHHHHHHHHHHHHhcC
Q psy1701         123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGY-YIMRGLMIIGTVLVAAIIP  193 (270)
Q Consensus       123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~-~~~r~~~~~~~~~lAi~ip  193 (270)
                      ++...++...+..++..+..+.+.--..+...+.+...-+        .+.+ +++.+.+ +.+..++..+..++....|
T Consensus       285 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~  363 (458)
T PRK10249        285 HNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLP  363 (458)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCh
Confidence            1111112333333344444444333333334444433311        1222 2223333 2333333333333322333


Q ss_pred             C--chhhHHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701         194 N--LGPIISLVGAICFSMLGLFCPAVIDYVTFY  224 (270)
Q Consensus       194 ~--~~~v~~lvGs~~~~~l~filP~l~~l~~~~  224 (270)
                      +  ++.+.++.  .....+.|++|++.+++.++
T Consensus       364 ~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        364 QKAFGLLMALV--VATLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            2  34444442  22578999999999999875

>PRK10655 potE putrescine transporter; Provisional

Probab=97.75  E-value=0.0035  Score=58.59  Aligned_cols=55  Identities=9%  Similarity=0.034  Sum_probs=45.1

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      .++..++....|+|.|-......-.|+|||+| .+|   ++..+..++.++|++.....
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            34556677889999999999999999999983 444   89999999999999876543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.74  E-value=0.0022  Score=60.50  Aligned_cols=168  Identities=14%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc----cccc----cccc
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED----TKGS----ITLN  124 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~----~~~~----il~n  124 (270)
                      ++..++....|+|.|--.......|.||+++.+|   ....+...+.++|.......+...+++    .+++    +.++
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~  272 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH  272 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence            4556777899999998888888888888766666   888999999999998876655433321    1111    1112


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHH-HHHHHHHHHHHHHH-hcCC
Q psy1701         125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYI-MRGLMIIGTVLVAA-IIPN  194 (270)
Q Consensus       125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~-~r~~~~~~~~~lAi-~ip~  194 (270)
                      ...++...+..++..++.+.+.--......+.+...-        ..+.+ |++.+.+-+ ....+..+..++.. .-+.
T Consensus       273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~  351 (468)
T TIGR03810       273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQA  351 (468)
T ss_pred             HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHH
Confidence            1112334444555555555444333333434433321        11222 223333322 22222211111111 1123


Q ss_pred             chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      ++.+.++.  .....+.|.++++.++++++++
T Consensus       352 ~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~  381 (468)
T TIGR03810       352 YNFAISLA--TSAILVPYLWSAAYQVKLSWRG  381 (468)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence            55555553  2346789999999999887654

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.66  E-value=0.0032  Score=59.05  Aligned_cols=56  Identities=9%  Similarity=0.049  Sum_probs=45.4

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      ..+..++....|+|.|-......-+|+|||+|  ..++++..+..++.++|.+....-
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r--~iPrai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        191 GAIQSTLNVTLWSFIGVESASVAAGVVKNPKR--NVPIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677889999999999999999999974  223489999999999999887653

>TIGR00909 2A0306 amino acid transporter

Probab=97.63  E-value=0.0017  Score=60.46  Aligned_cols=170  Identities=13%  Similarity=0.050  Sum_probs=92.3

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-c-c--c---ccc
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-T-K--G---SIT  122 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~-~--~---~il  122 (270)
                      ++.++..++....|+|.|.........|+|||+|  +.++.+..+..++.++|...........+.+ . +  +   .+.
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r--~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~  270 (429)
T TIGR00909       193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPER--DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG  270 (429)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc--cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence            3446778888999999999999999999999963  2234889999999999998865443222111 1 1  1   111


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYYIMRGLMIIGTVLVAAIIPN  194 (270)
Q Consensus       123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~  194 (270)
                      .+...++...+..+...++.+.+.--......+.+...-++        +.++|.+.+.+-..-..  .++.++ ....+
T Consensus       271 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~~  347 (429)
T TIGR00909       271 YDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLVP  347 (429)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHcC
Confidence            11122233444455555555555444334444444433211        11222233333111111  111111 23456


Q ss_pred             chhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      ++.+.++. + ....+.|++.++-.+++++++
T Consensus       348 ~~~l~~~~-~-~~~~~~y~~~~~a~~~lr~~~  377 (429)
T TIGR00909       348 LEGLAELT-S-IGTLIAFAAVNVAVIILRRRR  377 (429)
T ss_pred             HHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhc
Confidence            77777654 2 235677787777777766543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.59  E-value=0.0036  Score=58.82  Aligned_cols=170  Identities=15%  Similarity=0.072  Sum_probs=94.6

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc-Cccc----c---ccc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG-EDTK----G---SIT  122 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG-~~~~----~---~il  122 (270)
                      +.++..++....|+|.|-..+.....|+|||+|  ..++++..+...+.++|+...+.--..-. ++.+    +   ...
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r--~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~  257 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK--HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVL  257 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHH
Confidence            446788889999999999999999999999984  33447777888888889886554222211 1111    0   112


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHHHHHH-HHHHHHHHHHHhcC
Q psy1701         123 LNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYYIMRG-LMIIGTVLVAAIIP  193 (270)
Q Consensus       123 ~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~~~r~-~~~~~~~~lAi~ip  193 (270)
                      +.....+...+......+..+.+.--..+...+.+...-++        +.+ +++.+.+-..-. ++..+..++....|
T Consensus       258 ~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~  336 (446)
T PRK10197        258 ELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAP  336 (446)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcCh
Confidence            22222233444445455555555444445555555443221        122 222333322222 22222222222222


Q ss_pred             --CchhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         194 --NLGPIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       194 --~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                        .++.++++.|..  ..+.+.++++-+++++++
T Consensus       337 ~~~~~~l~~~~~~~--~li~y~~~~~a~i~lr~~  368 (446)
T PRK10197        337 AKVFKFLIDSSGAI--ALLVYLVIAVSQLRMRKI  368 (446)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence              366677765544  458899999999888763

>PRK15049 L-asparagine permease; Provisional

Probab=97.49  E-value=0.0077  Score=57.46  Aligned_cols=166  Identities=11%  Similarity=0.023  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-ccc---ccc---cccCCC
Q psy1701          55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTK---GSI---TLNLPK  127 (270)
Q Consensus        55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~---~~i---l~n~~~  127 (270)
                      ..++....|+|.|--.+...-.|+|||++  ..++++..++....++|+..........+. +.+   ++.   ......
T Consensus       223 ~~~~~~~~faf~G~e~i~~~aeE~knP~r--~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~  300 (499)
T PRK15049        223 LVLIQGVVFAFASIEMVGTAAGECKDPQT--MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV  300 (499)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc
Confidence            34455789999999999999999999985  334578888888888888766543333321 111   111   111111


Q ss_pred             chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh--------hCCCCCcchhHH-HHHHHHHHHHHHHHHhcCC--ch
Q psy1701         128 DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH--------RVPIPRHNMGYY-IMRGLMIIGTVLVAAIIPN--LG  196 (270)
Q Consensus       128 ~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~--------~~~~~~~~~~~~-~~r~~~~~~~~~lAi~ip~--~~  196 (270)
                      .+...+..+...+..+.+.--..+...+.+...-++        +.+ +++.+.+- ....++.++..++....|+  ++
T Consensus       301 ~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~  379 (499)
T PRK15049        301 PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFE  379 (499)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            233344444555555544443444455555443221        122 22333332 2222222222222223332  55


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         197 PIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                      .++++.  ..+..+.|.+|++.+++.+++
T Consensus       380 ~l~~~~--~~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        380 IVLNFA--SLGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence            555653  345788999999999988754

>TIGR00908 2A0305 ethanolamine permease

Probab=97.48  E-value=0.007  Score=56.64  Aligned_cols=52  Identities=10%  Similarity=0.010  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhh
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGY  107 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~  107 (270)
                      ++..++....|+|.|.......-.|+|||++ .+|   ++..+..++.++|...-.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence            4567777889999999999999999999974 444   888888888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11021 putative transporter; Provisional

Probab=97.47  E-value=0.013  Score=54.37  Aligned_cols=169  Identities=13%  Similarity=0.120  Sum_probs=91.4

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHhhH--HHHhhcCccc--ccc---
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVGYC--GYLKYGEDTK--GSI---  121 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--gY~~fG~~~~--~~i---  121 (270)
                      ++.++..++....|+|.|.-.....-+|+|||+| .+|   ....+...+.++|......  +...++|..+  +..   
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~  251 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGI  251 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHH
Confidence            4566788889999999999999999999999974 444   8999999999999988654  2222333211  111   


Q ss_pred             ccc-CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHH-HHHHHHHHHHHHHHH-
Q psy1701         122 TLN-LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYY-IMRGLMIIGTVLVAA-  190 (270)
Q Consensus       122 l~n-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~-~~r~~~~~~~~~lAi-  190 (270)
                      .+. +++ +...+..+...+..+.+.........+.+...-        ..+.+ |++.+.+- .....+..+..++.. 
T Consensus       252 ~~~~~G~-~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~  329 (410)
T PRK11021        252 FVQLFGG-YALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYA  329 (410)
T ss_pred             HHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            111 111 111222222233333332222222333333221        11222 22333332 222222222222222 


Q ss_pred             hcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         191 IIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       191 ~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                      .-.+++.+.++..  ....+.|.++++-.+++.++
T Consensus       330 ~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~  362 (410)
T PRK11021        330 LGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKG  362 (410)
T ss_pred             HhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc
Confidence            3457787777643  44678888888888887754

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.46  E-value=0.017  Score=54.67  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      ++..++....|+|.|-..+...-.|+|||++  ..++++..+...+.++|.......
T Consensus       207 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        207 PILMTMVAVNFAFSGTELIGIAAGETENPAK--VIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667789999999999999999999984  334588888888899998876543

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.45  E-value=0.0065  Score=57.40  Aligned_cols=171  Identities=15%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc-Cccc---ccc---ccc
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG-EDTK---GSI---TLN  124 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG-~~~~---~~i---l~n  124 (270)
                      .++..++....|+|.|--.+...-+|+|||+|  ..++++..+.....+.|..........-+ ++..   ++.   ...
T Consensus       211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r--~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~  288 (469)
T PRK11049        211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPEK--SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVL  288 (469)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh--HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHH
Confidence            45778889999999999999999999999984  23346666666777788766544332211 1111   111   111


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHHHHHHH-HHHHHHHHHhcCCc
Q psy1701         125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYIMRGLM-IIGTVLVAAIIPNL  195 (270)
Q Consensus       125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~~r~~~-~~~~~~lAi~ip~~  195 (270)
                      ....+...+..++..++.+.+.--..+...+.+...-+        .+.+ +++.+.+-+.-... ..+...+....|+.
T Consensus       289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~  367 (469)
T PRK11049        289 VGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSV  367 (469)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccH
Confidence            11112333344444444333332222333333333221        1222 22333333222222 22223344456665


Q ss_pred             hhhHHHhhhhH--HHHHHHHHHHHHHHHHhcC
Q psy1701         196 GPIISLVGAIC--FSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       196 ~~v~~lvGs~~--~~~l~filP~l~~l~~~~~  225 (270)
                      ...++.+-+.+  ...+.+.++++-+++++++
T Consensus       368 ~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~  399 (469)
T PRK11049        368 IGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ  399 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555433332  3557888999888888765

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.42  E-value=0.011  Score=55.83  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY  107 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~  107 (270)
                      +.++..++....|+|.|--.....-+|+|||+|  ..++++..+...+.++|.....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r--~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK--SIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777889999999999999999999984  3345889999999999998754

>PRK10836 lysine transporter; Provisional

Probab=97.38  E-value=0.012  Score=55.83  Aligned_cols=52  Identities=12%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          56 LFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      .......|+|.|--.+...-.|+|||+|  ..++++..++..+.++|......-
T Consensus       209 ~~~~~~~faf~G~e~~~~~a~E~knP~r--~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        209 GVAMIVGFSFQGTELIGIAAGESEDPAK--NIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567999999999999999999984  334588889999999999876543

>KOG1287|consensus

Probab=97.34  E-value=0.0049  Score=57.77  Aligned_cols=172  Identities=17%  Similarity=0.194  Sum_probs=107.7

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc--Cccccc-ccccCC
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG--EDTKGS-ITLNLP  126 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG--~~~~~~-il~n~~  126 (270)
                      +..++..++-.-.|||.|=...=.+-.|+|||+|  ..+++...++.++++.|+..=+..+-+-.  +-.+++ +-..+.
T Consensus       202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~k--tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa  279 (479)
T KOG1287|consen  202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR--TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFA  279 (479)
T ss_pred             chHHHHHHHHHhhhcccCchhhccchHhhcCccc--cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHH
Confidence            4456778898899999999888889999999984  33459999999999999998665443332  111111 111111


Q ss_pred             Cc---hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh--------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCc
Q psy1701         127 KD---PFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR--------VPIPRHNMGYYIMRGLMIIGTVLVAAIIPNL  195 (270)
Q Consensus       127 ~~---~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~--------~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~  195 (270)
                      +.   .+..++.++.+++.+.+.--.++...+.+...-++.        .+.++.+++   ..+...+..+.+...+.|+
T Consensus       280 ~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~---~allf~~~~~i~~~~~~d~  356 (479)
T KOG1287|consen  280 DRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR---PALLFSGLLSIVLSLIGDF  356 (479)
T ss_pred             HHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh---HHHHHHHHHHHHHHHHhhH
Confidence            11   223455555555555554444444444443332221        111221111   2233334444555567799


Q ss_pred             hhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         196 GPIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       196 ~~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      +.+++.++=.-.....+.+=+++++|.++++
T Consensus       357 ~~LIny~sf~~~l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  357 DQLINYVSFAYWLFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999888888888899999999988775

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.26  E-value=0.024  Score=53.40  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC  108 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~  108 (270)
                      .++..++....|+|.|--.....-.|+|||+|  ..+++...+.....++|......
T Consensus       199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k--~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK--SIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778899999999999999999999985  23346667777777788776543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.23  E-value=0.011  Score=55.40  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=46.0

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC  108 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~  108 (270)
                      +.++..++....|+|.|-......-+|+|||+|  ..++++..++.++.++|......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r--~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK--TMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc--cchHHHHHHHHHHHHHHHHHHHH
Confidence            345667778899999999999999999999984  22348999999999999887653

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.22  E-value=0.013  Score=55.19  Aligned_cols=168  Identities=14%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH--HHhhcCc--ccccc---cccC
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG--YLKYGED--TKGSI---TLNL  125 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g--Y~~fG~~--~~~~i---l~n~  125 (270)
                      ++..+++...|+|.|--.....-.|+|||+|  ..+++...+.....+.|...-...  ...+.+-  .+++.   +.+.
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r--~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~  278 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQ--SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL  278 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc
Confidence            4446677899999999999999999999984  233477666676777776542221  1111111  01111   1222


Q ss_pred             CCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHH-HHHHHHHHHHHHHHhcCC--
Q psy1701         126 PKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYI-MRGLMIIGTVLVAAIIPN--  194 (270)
Q Consensus       126 ~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~-~r~~~~~~~~~lAi~ip~--  194 (270)
                      .......+...+..+..+.+.--..+...+.++..-+        .+.+ +++.+.+-+ +..++..+..++....|+  
T Consensus       279 g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~  357 (456)
T PRK10238        279 GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESA  357 (456)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            2223333444444444444433334445455444321        1222 223333322 222222222222112232  


Q ss_pred             chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         195 LGPIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       195 ~~~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                      ++.+.++.  ..+..+.|.+|.+.+++.+++
T Consensus       358 f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~  386 (456)
T PRK10238        358 FGLLMALV--VSALVINWAMISLAHMKFRRA  386 (456)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            45555552  335678999999999998864

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.19  E-value=0.0084  Score=57.99  Aligned_cols=168  Identities=11%  Similarity=0.014  Sum_probs=93.6

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-c--cccc---ccc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-T--KGSI---TLN  124 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~--~~~i---l~n  124 (270)
                      +.++..+.....|+|.|--.+...-.|+|||++  ..++....++.++.++|..+...--..-+.+ .  ++.+   ...
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r--~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~  307 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR--AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEY  307 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc--cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHH
Confidence            345777888899999999999999999999985  2234899999999999998875433222211 1  1111   122


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--------hhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCch
Q psy1701         125 LPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERI--------KHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLG  196 (270)
Q Consensus       125 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l--------~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~  196 (270)
                      .+.++...+..+........+.--.++...+.+...-        ..+.++|.+.+.+-..-.  .+++.+++. +.+++
T Consensus       308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~-~~~~~  384 (557)
T TIGR00906       308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAF-LFDLK  384 (557)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHH-HcCHH
Confidence            2222333344444444444333333334444443331        122222333333322222  222233333 33577


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         197 PIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                      .+.++. + .+..+.|.++++..+.++++
T Consensus       385 ~l~~l~-s-ig~ll~y~lv~~~~l~lR~~  411 (557)
T TIGR00906       385 ALVDLL-S-IGTLLAYSLVAACVLILRYQ  411 (557)
T ss_pred             HHHHHH-H-HHHHHHHHHHHHHHHHhhcc
Confidence            777764 3 34679999998887777743

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.16  E-value=0.014  Score=54.64  Aligned_cols=57  Identities=11%  Similarity=-0.028  Sum_probs=48.2

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCC-CCCchhhHhhHHHHHHHHHHHHHhhHHH
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPG-HFLGKFGVLNIAMAVVISFYGMVGYCGY  110 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~gY  110 (270)
                      +.++..++....|+|.|--.+...-.|+|||+ +.+|   +...+...+.++|........
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999996 4555   889999999999998876544

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.12  E-value=0.019  Score=53.23  Aligned_cols=171  Identities=13%  Similarity=0.125  Sum_probs=98.6

Q ss_pred             CCCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCcc---cccc-----
Q psy1701          50 PFTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDT---KGSI-----  121 (270)
Q Consensus        50 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~---~~~i-----  121 (270)
                      .+.....+++..+|+|.|-.......+|+|| ++.+|   .+..+..++.++|......-....+++.   .++.     
T Consensus       186 ~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T PF13520_consen  186 GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFA  261 (426)
T ss_dssp             SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHH
T ss_pred             cccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccc
Confidence            4556788899999999999999999999887 44555   8999999999999998765555544321   1121     


Q ss_pred             --cccCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC------CCcchhHHHHHHHHHHHHHHHHH-h
Q psy1701         122 --TLNLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI------PRHNMGYYIMRGLMIIGTVLVAA-I  191 (270)
Q Consensus       122 --l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~------~~~~~~~~~~r~~~~~~~~~lAi-~  191 (270)
                        .+....++...+..++..+..+.+....+....+.++..-+++ .|+      |++.+.+-..-...+.....+.. .
T Consensus       262 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~  341 (426)
T PF13520_consen  262 VLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLF  341 (426)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHh
Confidence              1111112445555556666666666555556666666554332 121      22222232222222211111112 2


Q ss_pred             cC--CchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         192 IP--NLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       192 ip--~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      .|  +++.+.+.  +.....+.++++.+.+++.++++
T Consensus       342 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~  376 (426)
T PF13520_consen  342 IPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKR  376 (426)
T ss_dssp             SSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHS
T ss_pred             hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence            33  34555554  23346777788887777777654

...

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.12  E-value=0.0078  Score=57.35  Aligned_cols=57  Identities=18%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      +.++..++....|+|.|-..+...-.|+|||++  ..++++..+..++.++|.+....-
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r--~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR--TLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888999999999999999999999974  234489999999999999986543

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.12  E-value=0.02  Score=53.80  Aligned_cols=54  Identities=17%  Similarity=0.122  Sum_probs=43.0

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY  107 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~  107 (270)
                      .++..++....|+|.|--.....-.|+|||+|  ..+++...+......+|+....
T Consensus       201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r--~iPrAi~~~~~~~~~~y~l~~~  254 (452)
T TIGR01773       201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPIK--SITRATNSVIWRIIVFYLGSIF  254 (452)
T ss_pred             HHHHHHHHHHHHHhccHHHHhHHHHhhcChhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888999999999999999999999984  2334776777778888887544

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.07  E-value=0.043  Score=51.29  Aligned_cols=168  Identities=14%  Similarity=0.093  Sum_probs=92.3

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcC-cccccccccCC----
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGE-DTKGSITLNLP----  126 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~-~~~~~il~n~~----  126 (270)
                      ..+..+++...++|.|-......-+|+|||++-  .++....++..+.++|.......-...++ +.... ..+.|    
T Consensus       201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~--ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~  277 (466)
T COG0531         201 GGILAAILLAFFAFTGFEAIATLAEEVKNPKRT--IPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALA  277 (466)
T ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccc--ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHH
Confidence            356777788899999999999999999999642  23488899999999999988766666654 22211 11111    


Q ss_pred             -----CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHh--------hhCCCCCcchhHHHHHHHHHHHHHHHHHhc-
Q psy1701         127 -----KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIK--------HRVPIPRHNMGYYIMRGLMIIGTVLVAAII-  192 (270)
Q Consensus       127 -----~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~--------~~~~~~~~~~~~~~~r~~~~~~~~~lAi~i-  192 (270)
                           ..+...+..+...++.+.+..-......+.+...-+        .+.+++.+.+.+-..-..++..  .+.... 
T Consensus       278 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~  355 (466)
T COG0531         278 ALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFP  355 (466)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhh
Confidence                 112333333344444444432222222233322211        1222222233333222222222  122221 


Q ss_pred             ---CCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         193 ---PNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       193 ---p~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                         ..++.+.++  +.....+.|.++++..++.++++
T Consensus       356 ~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~  390 (466)
T COG0531         356 LSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRKK  390 (466)
T ss_pred             ccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence               234455554  34457889999999998888763

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.05  E-value=0.03  Score=52.96  Aligned_cols=55  Identities=11%  Similarity=0.092  Sum_probs=44.4

Q ss_pred             CchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHH
Q psy1701          52 TQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCG  109 (270)
Q Consensus        52 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~g  109 (270)
                      ..+..++....|+|.|--.....-+|+||+++.+|   .+..+..++.++|+......
T Consensus       199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~  253 (473)
T TIGR00905       199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLS  253 (473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHH
Confidence            34566777899999999999999999999444444   89999999999998886543

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.01  E-value=0.053  Score=51.88  Aligned_cols=48  Identities=19%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhhcccccccccccccCCCC-CCchhhHhhHHHHHHHHHHHHHh
Q psy1701          56 LFFSTVLFAMEGIGTVLPIENSMKKPGH-FLGKFGVLNIAMAVVISFYGMVG  106 (270)
Q Consensus        56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~y~~~g  106 (270)
                      ..+...+|+|.|--.....-+|+|||+| ++|   ++..+..++.++|....
T Consensus       198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       198 VVFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence            3444568999999999999999999974 555   88888888888887544

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.88  E-value=0.076  Score=50.28  Aligned_cols=50  Identities=14%  Similarity=0.016  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHh
Q psy1701          55 PLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVG  106 (270)
Q Consensus        55 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g  106 (270)
                      ..++-...|+|.|--.....-.|+|||+|  ..+++...+..+..+++....
T Consensus       220 ~~~~~~~~fsf~G~e~~~~~a~E~knP~r--~iP~Ai~~s~~i~~~~~~~~~  269 (482)
T TIGR00907       220 LLGLLNPAWSMTGYDGTAHMAEEIENPEV--VGPRAIIGAVAIGIVTGFCFN  269 (482)
T ss_pred             hhhhhhhHHHhcCcchhhHHHHhcCChhh--hcCHHHHHHHHHHHHHHHHHH
Confidence            34444567999999999999999999984  223477777776665544333

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.84  E-value=0.08  Score=54.38  Aligned_cols=52  Identities=17%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701          54 FPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY  107 (270)
Q Consensus        54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~  107 (270)
                      +...++++.+||.|.-....+-.|+|||++  ..++....++.+++++|+++.+
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~r--~IPratl~ai~i~~vlYllv~~  333 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQK--AIPKGTLLAILTTTVVYLGSVV  333 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhh--hhHHHHHHHHHHHHHHHHHHHH
Confidence            778888888899998888889999999984  3345899999999999999975

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.66  E-value=0.16  Score=48.31  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             chhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhh
Q psy1701          53 QFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGY  107 (270)
Q Consensus        53 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~  107 (270)
                      ++..++....|+|.|--.....-+|+|||++  ..+++...+...+..+|....+
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~--~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK--NFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc--cccHHHHHHHHHHHHHHHHHHH
Confidence            3555667788999999999999999999984  2234888999999999997644

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.21  E-value=0.5  Score=44.68  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701          56 LFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG  114 (270)
Q Consensus        56 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG  114 (270)
                      .+.-...|+|.|--.....-+|+|||+|  ..++.+..+..+..++|...-+......+
T Consensus       217 ~~~~~~~~~f~G~e~~~~~aeE~knP~r--~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       217 VSGLMAAYVMVGFGSAGELSEETKNPRR--VAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHhcCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3445678999999999999999999984  23447888888777666555443333333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.16  E-value=0.048  Score=50.71  Aligned_cols=213  Identities=15%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             hhHHHHhhcchhhhhhHhhhheeeeee-cccCC---CCCCCC-----CCCCCCchhHHHHHHHHHhhccccccccccccc
Q psy1701           9 FQEFWIDARGFRDNHSGHFMYLLCTYA-VTDLP---DTSTRH-----NVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMK   79 (270)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~~~~~i~~y~-~~~~~---~~~~~~-----~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~   79 (270)
                      .-|||...-+..+-+..+.+++.+... +.+..   +.++..     .+..+.++..++-+.+|||++.-.+=-.-+|-|
T Consensus       151 E~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~  230 (462)
T COG1113         151 ELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAK  230 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence            468998877776555554444433222 22221   112221     134466788999999999999988877788999


Q ss_pred             CCCCCCchhhHhhHHHH-----HHHHHHHHHhhHHHHhhcCcccccc--cccCCCchHHHHHHHHHHHHHHHHhhcchhh
Q psy1701          80 KPGHFLGKFGVLNIAMA-----VVISFYGMVGYCGYLKYGEDTKGSI--TLNLPKDPFSESIKILVALSILFTYGLQFGV  152 (270)
Q Consensus        80 ~p~~~~~~~~v~~~s~~-----~~~~~y~~~g~~gY~~fG~~~~~~i--l~n~~~~~~~~~~~i~~~i~~~~s~pl~~~p  152 (270)
                      ||++-  .+|+.+--..     -+..+..+..+.-|-.++++.++-+  +..++-.....+.+.........+.-=-.|.
T Consensus       231 dP~k~--ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys  308 (462)
T COG1113         231 DPEKA--IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS  308 (462)
T ss_pred             ChhhH--HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence            99852  2234333333     3334444555555555555433322  2222222222222222222222222223344


Q ss_pred             HHHHHHHHHhhhC-CC------CCc-chhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHH--HHHHHHHHHHHH
Q psy1701         153 PSEIVWERIKHRV-PI------PRH-NMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSML--GLFCPAVIDYVT  222 (270)
Q Consensus       153 ~~~~l~~~l~~~~-~~------~~~-~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l--~filP~l~~l~~  222 (270)
                      .-+++...-.+.. |+      |+. ...-+....+...+..++....|  +.++.++=+.++...  ...+=.+.|+|.
T Consensus       309 tsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~  386 (462)
T COG1113         309 TSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKL  386 (462)
T ss_pred             cchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555432221 11      122 23456677777778888888999  666666655554443  344456777787


Q ss_pred             hcC
Q psy1701         223 FYD  225 (270)
Q Consensus       223 ~~~  225 (270)
                      ++.
T Consensus       387 rk~  389 (462)
T COG1113         387 RKA  389 (462)
T ss_pred             Hhc
Confidence            763

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.74  E-value=0.037  Score=52.31  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhc
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYG  114 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG  114 (270)
                      +.++..++....++|.|--.....-.|.|||+|  ..++....+.....++|.......=...+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k--~IPra~~~~~~~~~v~y~~~~~~~~~~~~  260 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRK--TIPRATLLSVLRIGVFYVLTSYALTLAVP  260 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCchh--hhhhHhhhhhhhhhhhhhhhhhhcccccC
Confidence            667889999999999999999999999999984  33458889999999999987765444444

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286|consensus

Probab=94.91  E-value=0.6  Score=45.16  Aligned_cols=169  Identities=14%  Similarity=0.156  Sum_probs=98.6

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhH-HHHhhcCc--ccccccc----
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYC-GYLKYGED--TKGSITL----  123 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~-gY~~fG~~--~~~~il~----  123 (270)
                      +.++...+-...|+|.|--.+-..-.|-|||++  ..+++...++..+..+|....+. |-..=.++  ..++...    
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k--~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF  308 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRK--AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPF  308 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc--cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHH
Confidence            678889999999999999999999999999983  34558999999999999988753 33221222  2222110    


Q ss_pred             --cCCC---chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhC-CC----CCcchhHHHHHHHHH-HHHHHHHHhc
Q psy1701         124 --NLPK---DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRV-PI----PRHNMGYYIMRGLMI-IGTVLVAAII  192 (270)
Q Consensus       124 --n~~~---~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~-~~----~~~~~~~~~~r~~~~-~~~~~lAi~i  192 (270)
                        ...+   ..+..+++.+..+.+..+---.+++.-+.+...-+++. |+    -+++ .+=...+.+. +...++++..
T Consensus       309 ~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~  387 (554)
T KOG1286|consen  309 VIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNF  387 (554)
T ss_pred             HHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHh
Confidence              1111   13334666666666655555556677666665533221 11    0111 1111222222 2223333332


Q ss_pred             CC-----chhhHHHhhhhHHHHHHHHHHHHHHHHHhc
Q psy1701         193 PN-----LGPIISLVGAICFSMLGLFCPAVIDYVTFY  224 (270)
Q Consensus       193 p~-----~~~v~~lvGs~~~~~l~filP~l~~l~~~~  224 (270)
                      ..     ++.++++.|-  ++.+++.+=++.|++.++
T Consensus       388 ~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  388 SLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY  422 (554)
T ss_pred             ccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence            22     4888888654  366677777777777664

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=94.27  E-value=0.65  Score=42.07  Aligned_cols=164  Identities=12%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             CCCchhHHH-HHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccccc----cc--
Q psy1701          50 PFTQFPLFF-STVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTKGS----IT--  122 (270)
Q Consensus        50 ~~~~~~~~~-gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~----il--  122 (270)
                      ++.+...+. ....++|.+.....-...+++||++.+|   ....+..+...+|...-...-..+|.+.-++    ..  
T Consensus       176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~  252 (359)
T TIGR00912       176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL  252 (359)
T ss_pred             CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence            344444433 3678889887777777788888876555   8889999999999988877777777442211    11  


Q ss_pred             -ccC--CC--chHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhCCCCCcchhHHHHHHHHHHHHHHHHHhcCCchh
Q psy1701         123 -LNL--PK--DPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHRVPIPRHNMGYYIMRGLMIIGTVLVAAIIPNLGP  197 (270)
Q Consensus       123 -~n~--~~--~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~lAi~ip~~~~  197 (270)
                       +..  ++  +.+..+.-.......+...-+.++.....+.+.++.+    +.  +....-.+.  ....++ ..||-..
T Consensus       253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~--~~~~~~-~~~~~~~  323 (359)
T TIGR00912       253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKR----KY--SILILPVLM--VIFSIS-FFPDSSN  323 (359)
T ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----Cc--chhHHHHHH--HHHHHH-HccchHH
Confidence             111  10  0122222233344556666667777777776655432    21  122222222  222233 3555222


Q ss_pred             hHHHhh---hhHHHHHHHHHHHHHHHHHhcC
Q psy1701         198 IISLVG---AICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       198 v~~lvG---s~~~~~l~filP~l~~l~~~~~  225 (270)
                      -.....   ...+....+++|-++.+...-|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik  354 (359)
T TIGR00912       324 QLFDYLEFLPIIAIVFFLLLPLILFIIVKIK  354 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222   2334567778999887766543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=93.16  E-value=8  Score=37.10  Aligned_cols=213  Identities=11%  Similarity=0.090  Sum_probs=110.7

Q ss_pred             hhhHHHHhhcchhhhhhHhhhheeeeee-cccCCCC-----CCC-CCCCCCCchhHHHHHHHHHhhcccccccccccccC
Q psy1701           8 NFQEFWIDARGFRDNHSGHFMYLLCTYA-VTDLPDT-----STR-HNVAPFTQFPLFFSTVLFAMEGIGTVLPIENSMKK   80 (270)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~~~~~i~~y~-~~~~~~~-----~~~-~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~   80 (270)
                      -.-|||...-+.+..+..+.+.+++.+. ..+....     .++ +....+.++...+-+..|||.|.-.+---..|-+|
T Consensus       183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~n  262 (541)
T COG0833         183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESEN  262 (541)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCC
Confidence            3458999877776544333333322222 1221111     111 12233455666667788999998888778889999


Q ss_pred             CCCCCchhhHhhHHHHHHHHHHHHHhh-HHHHh-hcCc----------cccccc---ccCCCchHHHHHHHHHHHHHHHH
Q psy1701          81 PGHFLGKFGVLNIAMAVVISFYGMVGY-CGYLK-YGED----------TKGSIT---LNLPKDPFSESIKILVALSILFT  145 (270)
Q Consensus        81 p~~~~~~~~v~~~s~~~~~~~y~~~g~-~gY~~-fG~~----------~~~~il---~n~~~~~~~~~~~i~~~i~~~~s  145 (270)
                      |++  ..+++..-...=..++|+..-+ .|-+. |.|.          .+++..   +|.+-..+..+.+.....+++.+
T Consensus       263 P~K--~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa  340 (541)
T COG0833         263 PRK--SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSA  340 (541)
T ss_pred             chh--hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHH
Confidence            984  2334666556556666654332 23322 3220          111222   22221144556665565655555


Q ss_pred             hhcchhhHHHHHHHHHhhhC-CC------CCcchhHHHHHHHHHHHHHHHHHhcCC---chhhHHHhhhhHHHHHHHHHH
Q psy1701         146 YGLQFGVPSEIVWERIKHRV-PI------PRHNMGYYIMRGLMIIGTVLVAAIIPN---LGPIISLVGAICFSMLGLFCP  215 (270)
Q Consensus       146 ~pl~~~p~~~~l~~~l~~~~-~~------~~~~~~~~~~r~~~~~~~~~lAi~ip~---~~~v~~lvGs~~~~~l~filP  215 (270)
                      --=.+|..-+.+...-.++. |+      |+..+..-+.-+.++.+...++...+.   ++-++++.|-.  ..++.+-=
T Consensus       341 ~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I  418 (541)
T COG0833         341 ANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSI  418 (541)
T ss_pred             hhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHH
Confidence            44456777777777643322 11      233333333334444444444443333   45556665443  45666667


Q ss_pred             HHHHHHHhc
Q psy1701         216 AVIDYVTFY  224 (270)
Q Consensus       216 ~l~~l~~~~  224 (270)
                      ++.|++.++
T Consensus       419 ~~shirFR~  427 (541)
T COG0833         419 CLSHIRFRR  427 (541)
T ss_pred             HHHHHHHHH
Confidence            788888764

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=87.92  E-value=10  Score=35.00  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             CchhhHHHhhhhHHHHHHHHHHHHHHHHH
Q psy1701         194 NLGPIISLVGAICFSMLGLFCPAVIDYVT  222 (270)
Q Consensus       194 ~~~~v~~lvGs~~~~~l~filP~l~~l~~  222 (270)
                      .++.++++    +...+.+++|..+-+.+
T Consensus       323 Gl~~Ii~~----~~PvL~~~YP~~i~lil  347 (378)
T TIGR00796       323 GLTQIISI----SIPVLMIIYPLAIVLIL  347 (378)
T ss_pred             CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            67777764    57888889998766654

transmembrane helical spanners.

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=87.85  E-value=24  Score=33.03  Aligned_cols=74  Identities=9%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCC--CCCCCchhhHHHHHHHH
Q psy1701         170 HNMGYYIMRGLMIIGTVLVAAIIPNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDP--NKSWYRPRTIKNFIIIL  243 (270)
Q Consensus       170 ~~~~~~~~r~~~~~~~~~lAi~ip~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~--~~~~~~~~~~~~~~i~~  243 (270)
                      .+.+|...|......+.++.+..-+.+.++.+.+.+.+..+-+..++++.+...+++  +..-++|.....|...+
T Consensus       323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~  398 (416)
T COG1914         323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVI  398 (416)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHH
Confidence            445677788777777666666555999999999999988888888888887766541  22234555555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.97
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.91
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.34

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.97  E-value=0.00051  Score=63.67  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccc---cc-------ccc
Q psy1701          54 FPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTK---GS-------ITL  123 (270)
Q Consensus        54 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~---~~-------il~  123 (270)
                      ...++...+|+|.|.-.......|+|||++  ..++.+..++.++.++|....+......+++..   +.       +..
T Consensus       203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (511)
T 4djk_A          203 TLVVFVAFILSYMGVEASATHVNEMSNPGR--DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS  280 (511)
T ss_dssp             TTTTHHHHHHHHTTGGGGTGGGSSSSCCTT--THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH
Confidence            445677889999999999999999999984  334589999999999999988766665554321   11       122


Q ss_pred             cCC--CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhh-hCCC------CCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         124 NLP--KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKH-RVPI------PRHNMGYYIMRGLMIIGTVLVAAIIPN  194 (270)
Q Consensus       124 n~~--~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~-~~~~------~~~~~~~~~~r~~~~~~~~~lAi~ip~  194 (270)
                      +.+  ..+...+..+...+..+.+.--.+....+.++..-++ ..|+      +++.+.+-+.-.  .....++.+.+++
T Consensus       281 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~--~~~~~l~~~~~~~  358 (511)
T 4djk_A          281 HVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQ--LVITSIALIILTN  358 (511)
T ss_dssp             SSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHH--HHHHHHHHHHHHS
T ss_pred             HhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHH--HHHHHHHHHHhcc
Confidence            333  2345555555555555544333333333444333221 1111      122222222211  1122223334454


Q ss_pred             --------chhhHHHhhhhHHHHHHHHHHHHHHHHHhcC
Q psy1701         195 --------LGPIISLVGAICFSMLGLFCPAVIDYVTFYD  225 (270)
Q Consensus       195 --------~~~v~~lvGs~~~~~l~filP~l~~l~~~~~  225 (270)
                              ++.+.++.+  .+..+.|.+|.+.+++.+++
T Consensus       359 ~~~~~~~~f~~l~~~~~--~~~~~~y~~~~~~~~~~r~~  395 (511)
T 4djk_A          359 TGGGNNMSFLIALALTV--VIYLCAYFMLFIGYIVLVLK  395 (511)
T ss_dssp             SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence                    344444432  24677788888877776654

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.91  E-value=0.00024  Score=64.70  Aligned_cols=171  Identities=9%  Similarity=-0.015  Sum_probs=93.7

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCccc----cccc---c
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGEDTK----GSIT---L  123 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~~~----~~il---~  123 (270)
                      +.++..++....|+|.|.........|+|||++  ..++....+.....++|...........+.+.-    ++..   +
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r--~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~  267 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR--NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR  267 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH
Confidence            567888899999999999999999999999963  234488999999999999998776666654321    1110   1


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC------CCcchhHHHHHHHHHHHHHHHHH--hc--
Q psy1701         124 NLPKDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI------PRHNMGYYIMRGLMIIGTVLVAA--II--  192 (270)
Q Consensus       124 n~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~------~~~~~~~~~~r~~~~~~~~~lAi--~i--  192 (270)
                      +...++...+..+...+..+.+.--..+...+.+...-+++ .|+      +++.+.+-..-...+  +.+++.  ..  
T Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~--~~~~~~~~~~~~  345 (445)
T 3l1l_A          268 MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGIL--MTIFQLSSISPN  345 (445)
T ss_dssp             HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHH--HHHHHHSTTSHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHH--HHHHHHHHHccc
Confidence            10011233333333333333333223333444444332211 111      122222222221111  222222  12  


Q ss_pred             --CCchhhHHHhhhhHHHHHHHHHHHHHHHHHhcCCC
Q psy1701         193 --PNLGPIISLVGAICFSMLGLFCPAVIDYVTFYDPN  227 (270)
Q Consensus       193 --p~~~~v~~lvGs~~~~~l~filP~l~~l~~~~~~~  227 (270)
                        ..++.+.++.+  ....+.|.++++.+++.+++++
T Consensus       346 ~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          346 ATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence              23555555543  3467899999999999987653

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.34  E-value=0.00053  Score=62.39  Aligned_cols=169  Identities=12%  Similarity=0.094  Sum_probs=91.4

Q ss_pred             CCchhHHHHHHHHHhhcccccccccccccCCCCCCchhhHhhHHHHHHHHHHHHHhhHHHHhhcCc-cc---c-cccccC
Q psy1701          51 FTQFPLFFSTVLFAMEGIGTVLPIENSMKKPGHFLGKFGVLNIAMAVVISFYGMVGYCGYLKYGED-TK---G-SITLNL  125 (270)
Q Consensus        51 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-~~---~-~il~n~  125 (270)
                      +.++..++....|+|.|.........|+|||++  ..++....+...+.++|...........+.+ ..   + .+....
T Consensus       187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (444)
T 3gia_A          187 VSGMIFASAIFFLSYMGFGVITNASEHIENPKK--NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAA  264 (444)
T ss_dssp             HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc--chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHH
Confidence            345667778888999999999999999999974  2344889999999999998876554444321 10   0 000000


Q ss_pred             C---CchHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhh-CCC----C-CcchhHHHHHHHHHHHHHHHHHhcCCch
Q psy1701         126 P---KDPFSESIKILVALSILFTYGLQFGVPSEIVWERIKHR-VPI----P-RHNMGYYIMRGLMIIGTVLVAAIIPNLG  196 (270)
Q Consensus       126 ~---~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~l~~~l~~~-~~~----~-~~~~~~~~~r~~~~~~~~~lAi~ip~~~  196 (270)
                      .   .++...+..+...+..+.+.--.++...+.+...-+++ .|+    . ++.+.+-.  .....++.+++ .+.+++
T Consensus       265 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~--~~~~~~~~~~~-~~~~~~  341 (444)
T 3gia_A          265 KPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGL--YITSALGVLFA-LLFNME  341 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHH--HHHHHHHHHHH-HHSCHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHH--HHHHHHHHHHH-HHcCHH
Confidence            0   01112223333333333333333333444444332221 121    1 11122211  11111222222 234688


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHhcCC
Q psy1701         197 PIISLVGAICFSMLGLFCPAVIDYVTFYDP  226 (270)
Q Consensus       197 ~v~~lvGs~~~~~l~filP~l~~l~~~~~~  226 (270)
                      .+.++.+  .+..+.|.++++.+++.++++
T Consensus       342 ~l~~~~~--~~~~~~~~~~~~~~~~~r~~~  369 (444)
T 3gia_A          342 GVASITS--AVFMVIYLFVILSHYILIDEV  369 (444)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence            8777743  357889999999988887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00