Psyllid ID: psy17033

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQSPQKS
ccccccHHHHHHHHHHHHHHccEEEcccEEEEEcccccccHHHHHHHHHccccEEcccccHHHHHHHHccccccEEHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccc
ccccccHHHHHHHHHHHHHccccEccccEEEEEEccccccHHHHHHHHHccccEEEccccHHHHHHHHHccHEEEEEEEcccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHccc
mepafdnstRQIIIDSLKELgfkfhdkgtavciegprfssraeSNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDydcwrdtgnkVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVetsnmspqspqks
mepafdnstrQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKsvvetsnmspqspqks
MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQSPQKS
**********QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELK****************
MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVET****P******
********TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSV**************
**PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMS*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQSPQKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query148 2.2.26 [Sep-21-2011]
Q7Q9N9278 S-methyl-5'-thioadenosine yes N/A 0.972 0.517 0.645 1e-50
E3XFR6281 S-methyl-5'-thioadenosine N/A N/A 0.972 0.512 0.662 6e-50
Q16MW6279 S-methyl-5'-thioadenosine N/A N/A 0.972 0.516 0.648 2e-49
F6V515281 S-methyl-5'-thioadenosine yes N/A 0.966 0.508 0.531 7e-40
Q9V813289 S-methyl-5'-thioadenosine yes N/A 0.952 0.487 0.560 1e-39
Q291H4289 S-methyl-5'-thioadenosine yes N/A 0.952 0.487 0.567 2e-39
Q7ZV22280 S-methyl-5'-thioadenosine yes N/A 0.966 0.510 0.517 6e-39
Q9CQ65283 S-methyl-5'-thioadenosine yes N/A 0.966 0.505 0.510 3e-38
F6RQL9283 S-methyl-5'-thioadenosine yes N/A 0.966 0.505 0.503 6e-38
Q13126283 S-methyl-5'-thioadenosine yes N/A 0.966 0.505 0.503 6e-38
>sp|Q7Q9N9|MTAP_ANOGA S-methyl-5'-thioadenosine phosphorylase OS=Anopheles gambiae GN=AGAP005129 PE=3 SV=4 Back     alignment and function desciption
 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 111/144 (77%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           MEPAF N TR ++I++ + +G   H+KGT V IEGPRFSS+AESNLFR W A LVNMTLV
Sbjct: 134 MEPAFCNRTRDVLIETARGIGLGVHEKGTVVTIEGPRFSSKAESNLFRQWGADLVNMTLV 193

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
           PEVVLAKEAGL YAA+AMATDYDCWR+ G  V VADVL TFK+NV K+T L ++ +PK+A
Sbjct: 194 PEVVLAKEAGLCYAAIAMATDYDCWREAGEDVNVADVLATFKKNVTKVTDLIINAIPKVA 253

Query: 121 AKDWTNEITELKSVVETSNMSPQS 144
           A DW++ I EL   V TS M P S
Sbjct: 254 ALDWSDTIEELGKTVNTSIMLPHS 277
Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
Anopheles gambiae (taxid: 7165)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 8
>sp|E3XFR6|MTAP_ANODA S-methyl-5'-thioadenosine phosphorylase OS=Anopheles darlingi GN=AND_22863 PE=3 SV=1 Back     alignment and function description
>sp|Q16MW6|MTAP_AEDAE S-methyl-5'-thioadenosine phosphorylase OS=Aedes aegypti GN=AAEL012172 PE=3 SV=1 Back     alignment and function description
>sp|F6V515|MTAP_XENTR S-methyl-5'-thioadenosine phosphorylase OS=Xenopus tropicalis GN=mtap PE=3 SV=1 Back     alignment and function description
>sp|Q9V813|MTAP_DROME S-methyl-5'-thioadenosine phosphorylase OS=Drosophila melanogaster GN=CG4802 PE=1 SV=1 Back     alignment and function description
>sp|Q291H4|MTAP_DROPS S-methyl-5'-thioadenosine phosphorylase OS=Drosophila pseudoobscura pseudoobscura GN=GA18442 PE=3 SV=1 Back     alignment and function description
>sp|Q7ZV22|MTAP_DANRE S-methyl-5'-thioadenosine phosphorylase OS=Danio rerio GN=mtap PE=2 SV=2 Back     alignment and function description
>sp|Q9CQ65|MTAP_MOUSE S-methyl-5'-thioadenosine phosphorylase OS=Mus musculus GN=Mtap PE=2 SV=1 Back     alignment and function description
>sp|F6RQL9|MTAP_MACMU S-methyl-5'-thioadenosine phosphorylase OS=Macaca mulatta GN=MTAP PE=3 SV=1 Back     alignment and function description
>sp|Q13126|MTAP_HUMAN S-methyl-5'-thioadenosine phosphorylase OS=Homo sapiens GN=MTAP PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
158292620 278 AGAP005129-PA [Anopheles gambiae str. PE 0.972 0.517 0.645 7e-49
374110659 281 RecName: Full=S-methyl-5'-thioadenosine 0.972 0.512 0.662 4e-48
170032153 278 S-methyl-5-thioadenosine phosphorylase [ 0.972 0.517 0.631 8e-48
157131660 279 methylthioadenosine phosphorylase [Aedes 0.972 0.516 0.648 1e-47
239789370154 ACYPI004629 [Acyrthosiphon pisum] 0.952 0.915 0.631 2e-46
193702422 272 PREDICTED: putative S-methyl-5'-thioaden 0.952 0.518 0.631 3e-46
156543366 283 PREDICTED: putative S-methyl-5'-thioaden 0.952 0.498 0.567 3e-42
307187452224 S-methyl-5'-thioadenosine phosphorylase 0.972 0.642 0.569 1e-41
340713815 285 PREDICTED: putative S-methyl-5'-thioaden 0.972 0.505 0.576 5e-41
345495836 274 PREDICTED: putative S-methyl-5'-thioaden 0.939 0.507 0.561 6e-41
>gi|158292620|ref|XP_314011.4| AGAP005129-PA [Anopheles gambiae str. PEST] gi|374110742|sp|Q7Q9N9.4|MTAP_ANOGA RecName: Full=S-methyl-5'-thioadenosine phosphorylase; AltName: Full=5'-methylthioadenosine phosphorylase; Short=MTA phosphorylase; Short=MTAP; Short=MTAPase gi|157017077|gb|EAA09511.4| AGAP005129-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 111/144 (77%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           MEPAF N TR ++I++ + +G   H+KGT V IEGPRFSS+AESNLFR W A LVNMTLV
Sbjct: 134 MEPAFCNRTRDVLIETARGIGLGVHEKGTVVTIEGPRFSSKAESNLFRQWGADLVNMTLV 193

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
           PEVVLAKEAGL YAA+AMATDYDCWR+ G  V VADVL TFK+NV K+T L ++ +PK+A
Sbjct: 194 PEVVLAKEAGLCYAAIAMATDYDCWREAGEDVNVADVLATFKKNVTKVTDLIINAIPKVA 253

Query: 121 AKDWTNEITELKSVVETSNMSPQS 144
           A DW++ I EL   V TS M P S
Sbjct: 254 ALDWSDTIEELGKTVNTSIMLPHS 277

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|374110659|sp|E3XFR6.1|MTAP_ANODA RecName: Full=S-methyl-5'-thioadenosine phosphorylase; AltName: Full=5'-methylthioadenosine phosphorylase; Short=MTA phosphorylase; Short=MTAP; Short=MTAPase gi|312370924|gb|EFR19223.1| hypothetical protein AND_22863 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170032153|ref|XP_001843947.1| S-methyl-5-thioadenosine phosphorylase [Culex quinquefasciatus] gi|167871896|gb|EDS35279.1| S-methyl-5-thioadenosine phosphorylase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157131660|ref|XP_001655912.1| methylthioadenosine phosphorylase [Aedes aegypti] gi|157131662|ref|XP_001655913.1| methylthioadenosine phosphorylase [Aedes aegypti] gi|122127167|sp|Q16MW6.1|MTAP_AEDAE RecName: Full=S-methyl-5'-thioadenosine phosphorylase; AltName: Full=5'-methylthioadenosine phosphorylase; Short=MTA phosphorylase; Short=MTAP; Short=MTAPase gi|108871452|gb|EAT35677.1| AAEL012172-PA [Aedes aegypti] gi|108871453|gb|EAT35678.1| AAEL012179-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|239789370|dbj|BAH71314.1| ACYPI004629 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193702422|ref|XP_001945751.1| PREDICTED: putative S-methyl-5'-thioadenosine phosphorylase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|156543366|ref|XP_001608215.1| PREDICTED: putative S-methyl-5'-thioadenosine phosphorylase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307187452|gb|EFN72536.1| S-methyl-5'-thioadenosine phosphorylase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340713815|ref|XP_003395431.1| PREDICTED: putative S-methyl-5'-thioadenosine phosphorylase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345495836|ref|XP_003427584.1| PREDICTED: putative S-methyl-5'-thioadenosine phosphorylase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
FB|FBgn0034215289 CG4802 [Drosophila melanogaste 0.952 0.487 0.560 8e-37
UNIPROTKB|F1NCV7273 MTAP "Uncharacterized protein" 0.952 0.516 0.521 8e-37
ZFIN|ZDB-GENE-040426-1505280 mtap "methylthioadenosine phos 0.952 0.503 0.528 1.7e-36
MGI|MGI:1914152283 Mtap "methylthioadenosine phos 0.952 0.498 0.521 3.5e-36
UNIPROTKB|B4DUC8300 MTAP "S-methyl-5'-thioadenosin 0.952 0.47 0.514 9.2e-36
UNIPROTKB|Q13126283 MTAP "S-methyl-5'-thioadenosin 0.952 0.498 0.514 9.2e-36
UNIPROTKB|F1P9L1281 MTAP "Uncharacterized protein" 0.952 0.501 0.507 4e-35
UNIPROTKB|J9P5I1285 MTAP "S-methyl-5'-thioadenosin 0.952 0.494 0.507 4e-35
RGD|1310114391 Mtap "methylthioadenosine phos 0.891 0.337 0.548 5.1e-35
UNIPROTKB|H9KUV2294 MTAP "S-methyl-5'-thioadenosin 0.952 0.479 0.492 6.5e-35
FB|FBgn0034215 CG4802 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 79/141 (56%), Positives = 97/141 (68%)

Query:     1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
             M PAF   TR I++ + KEL    HDK T V IEGPRFSSR+ES++FR W   L+NMT  
Sbjct:   146 MFPAFSERTRNILLQAAKELEIPAHDKATIVTIEGPRFSSRSESHMFRQWGGDLINMTTC 205

Query:    61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
             PEVVLAKEAGLLY +VA+ATDYDCWR     V V DVL+TF ENV K+ K+ V+ V +IA
Sbjct:   206 PEVVLAKEAGLLYGSVAIATDYDCWRMGCEGVNVQDVLRTFAENVIKVKKILVNAVGRIA 265

Query:   121 AKDWTNEITELKSVVETSNMS 141
              +DW+ +I   K  V  + MS
Sbjct:   266 KEDWSEDILNAKQCVCNNTMS 286
GO:0017061 "S-methyl-5-thioadenosine phosphorylase activity" evidence=ISS;NAS
GO:0016310 "phosphorylation" evidence=NAS
GO:0005575 "cellular_component" evidence=ND
GO:0004645 "phosphorylase activity" evidence=IEA
GO:0009116 "nucleoside metabolic process" evidence=IEA
UNIPROTKB|F1NCV7 MTAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1505 mtap "methylthioadenosine phosphorylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914152 Mtap "methylthioadenosine phosphorylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4DUC8 MTAP "S-methyl-5'-thioadenosine phosphorylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13126 MTAP "S-methyl-5'-thioadenosine phosphorylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9L1 MTAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5I1 MTAP "S-methyl-5'-thioadenosine phosphorylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310114 Mtap "methylthioadenosine phosphorylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H9KUV2 MTAP "S-methyl-5'-thioadenosine phosphorylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F6RQL9MTAP_MACMU2, ., 4, ., 2, ., 2, 80.50340.96620.5053yesN/A
F6V515MTAP_XENTR2, ., 4, ., 2, ., 2, 80.53140.96620.5088yesN/A
Q7Q9N9MTAP_ANOGA2, ., 4, ., 2, ., 2, 80.64580.97290.5179yesN/A
Q9CQ65MTAP_MOUSE2, ., 4, ., 2, ., 2, 80.51040.96620.5053yesN/A
Q9V813MTAP_DROME2, ., 4, ., 2, ., 2, 80.56020.95270.4878yesN/A
Q291H4MTAP_DROPS2, ., 4, ., 2, ., 2, 80.56730.95270.4878yesN/A
Q5JEQ6MTAP_PYRKO2, ., 4, ., 2, ., 2, 80.50420.78370.4513yesN/A
Q13126MTAP_HUMAN2, ., 4, ., 2, ., 2, 80.50340.96620.5053yesN/A
Q7ZV22MTAP_DANRE2, ., 4, ., 2, ., 2, 80.51740.96620.5107yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
TIGR01694241 TIGR01694, MTAP, 5'-deoxy-5'-methylthioadenosine p 6e-47
PRK08564267 PRK08564, PRK08564, 5'-methylthioadenosine phospho 4e-43
COG0005262 COG0005, Pnp, Purine nucleoside phosphorylase [Nuc 3e-37
PRK08931289 PRK08931, PRK08931, 5'-methylthioadenosine phospho 5e-34
PRK08666261 PRK08666, PRK08666, 5'-methylthioadenosine phospho 4e-28
PRK07432290 PRK07432, PRK07432, 5'-methylthioadenosine phospho 2e-27
PRK07823264 PRK07823, PRK07823, 5'-methylthioadenosine phospho 3e-26
pfam01048232 pfam01048, PNP_UDP_1, Phosphorylase superfamily 4e-22
PRK08202272 PRK08202, PRK08202, purine nucleoside phosphorylas 3e-13
PRK09136245 PRK09136, PRK09136, 5'-methylthioadenosine phospho 4e-13
TIGR01697248 TIGR01697, PNPH-PUNA-XAPA, inosine/guanosine/xanth 2e-12
TIGR01700249 TIGR01700, PNPH, purine nucleoside phosphorylase I 5e-10
TIGR01698237 TIGR01698, PUNP, purine nucleotide phosphorylase 2e-05
>gnl|CDD|233535 TIGR01694, MTAP, 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information 
 Score =  151 bits (384), Expect = 6e-47
 Identities = 55/118 (46%), Positives = 72/118 (61%), Gaps = 1/118 (0%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
               +    RQ +I+SL+ LG   HD GT VC EGPRFS+RAES +F+SW A +V MT V
Sbjct: 125 FGDPYCEDLRQRLIESLRRLGLTVHDGGTYVCTEGPRFSTRAESRMFKSWGADIVGMTGV 184

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
           PE VLA+E  L YA +A+ TDYDCW      V   +V +   ENVEK  ++ +  + K
Sbjct: 185 PEAVLARELELCYATLALVTDYDCWISAD-HVTAEEVEEVMGENVEKAKRILLEAIKK 241

This model represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterized including a crystal structure. A misleading characterization is found for a Sulfolobus solfataricus enzyme which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme. This explains the finding that the characterized enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this mis-naming of this enzyme has been carried forward to several publications including a crystal stucture. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues [Central intermediary metabolism, Other, Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 241
>gnl|CDD|236290 PRK08564, PRK08564, 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>gnl|CDD|223084 COG0005, Pnp, Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|181584 PRK08931, PRK08931, 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|169548 PRK08666, PRK08666, 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>gnl|CDD|180977 PRK07432, PRK07432, 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236107 PRK07823, PRK07823, 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily Back     alignment and domain information
>gnl|CDD|236183 PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236390 PRK09136, PRK09136, 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>gnl|CDD|130758 TIGR01697, PNPH-PUNA-XAPA, inosine/guanosine/xanthosine phosphorylase family Back     alignment and domain information
>gnl|CDD|233537 TIGR01700, PNPH, purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>gnl|CDD|130759 TIGR01698, PUNP, purine nucleotide phosphorylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 148
PRK08931289 5'-methylthioadenosine phosphorylase; Provisional 100.0
PRK07432290 5'-methylthioadenosine phosphorylase; Provisional 100.0
PRK08564267 5'-methylthioadenosine phosphorylase II; Reviewed 100.0
COG0005262 Pnp Purine nucleoside phosphorylase [Nucleotide tr 100.0
PRK07823264 5'-methylthioadenosine phosphorylase; Validated 100.0
TIGR01698237 PUNP purine nucleotide phosphorylase. methylthioad 100.0
KOG3985|consensus283 100.0
TIGR01699248 XAPA xanthosine phosphorylase. (TIGR01698, TIGR017 100.0
PRK09136245 5'-methylthioadenosine phosphorylase; Validated 100.0
KOG3984|consensus286 100.0
PRK08666261 5'-methylthioadenosine phosphorylase; Validated 100.0
PRK08202272 purine nucleoside phosphorylase; Provisional 100.0
TIGR01700249 PNPH purine nucleoside phosphorylase I, inosine an 99.97
TIGR01697248 PNPH-PUNA-XAPA inosine guanosine and xanthosine ph 99.94
TIGR01694241 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase 99.93
PF01048234 PNP_UDP_1: Phosphorylase superfamily; InterPro: IP 99.49
TIGR03468212 HpnG hopanoid-associated phosphorylase. The sequen 99.35
PRK05584230 5'-methylthioadenosine/S-adenosylhomocysteine nucl 98.94
TIGR01704228 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho 97.47
TIGR01721266 AMN-like AMP nucleosidase, putative. The sequences 97.44
TIGR00107232 deoD purine-nucleoside phosphorylase, family 1 (de 97.38
PRK07115258 AMP nucleosidase; Provisional 97.3
PRK05819235 deoD purine nucleoside phosphorylase; Reviewed 97.08
TIGR03664222 fut_nucase futalosine nucleosidase. This enzyme ca 97.0
PLN02584249 5'-methylthioadenosine nucleosidase 96.89
PRK13374233 purine nucleoside phosphorylase; Provisional 96.78
COG0813236 DeoD Purine-nucleoside phosphorylase [Nucleotide t 96.45
TIGR01719287 euk_UDPppase uridine phosphorylase. This model rep 96.43
PRK07077238 hypothetical protein; Provisional 96.43
PRK14697233 bifunctional 5'-methylthioadenosine/S-adenosylhomo 96.25
PRK06714236 S-adenosylhomocysteine nucleosidase; Validated 96.21
PRK06698 459 bifunctional 5'-methylthioadenosine/S-adenosylhomo 96.12
TIGR01718245 Uridine-psphlse uridine phosphorylase. Sequences f 95.66
PRK07164218 5'-methylthioadenosine/S-adenosylhomocysteine nucl 95.32
COG2099257 CobK Precorrin-6x reductase [Coenzyme metabolism] 94.36
PRK11178251 uridine phosphorylase; Provisional 94.34
TIGR01705212 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh 94.18
TIGR01717477 AMP-nucleosdse AMP nucleosidase. This model repres 93.41
PRK05634185 nucleosidase; Provisional 92.98
PRK06026212 5'-methylthioadenosine/S-adenosylhomocysteine nucl 92.75
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 92.35
TIGR00715256 precor6x_red precorrin-6x reductase. This enzyme w 92.12
PRK08236212 hypothetical protein; Provisional 91.84
PRK08292489 AMP nucleosidase; Provisional 91.37
COG0775234 Pfs Nucleoside phosphorylase [Nucleotide transport 90.73
PF02571249 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: 90.5
COG2820248 Udp Uridine phosphorylase [Nucleotide transport an 88.87
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 88.72
COG2200256 Rtn c-di-GMP phosphodiesterase class I (EAL domain 82.62
cd06284 267 PBP1_LacI_like_6 Ligand-binding domain of an uncha 81.22
PF1479164 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 81.01
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-45  Score=306.40  Aligned_cols=121  Identities=37%  Similarity=0.673  Sum_probs=116.5

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033          1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT   80 (148)
Q Consensus         1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT   80 (148)
                      |++|||++||++++++|+++|+++|++|||+|++|||||||||+||||+||||+||||++||+++|||+||||++||+||
T Consensus       129 m~~~y~~~Lr~~l~~~a~~~~~~~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VT  208 (289)
T PRK08931        129 MAHPVCPRLGDRLAAAARAEGITVHRGGTYLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVT  208 (289)
T ss_pred             CCcccCHHHHHHHHHHHHHcCCeEecceEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033         81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA  121 (148)
Q Consensus        81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~  121 (148)
                      ||++|....+++||+||+++++++.+++++||.++|+++++
T Consensus       209 N~a~g~~~~~~~t~eeV~~~~~~~~~~~~~ll~~~i~~l~~  249 (289)
T PRK08931        209 DYDCWHPDHDAVTVDAVIAVLLANADKARALVARLAPDLGA  249 (289)
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999744578999999999999999999999999999954

>PRK07432 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07823 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01698 PUNP purine nucleotide phosphorylase Back     alignment and domain information
>KOG3985|consensus Back     alignment and domain information
>TIGR01699 XAPA xanthosine phosphorylase Back     alignment and domain information
>PRK09136 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>KOG3984|consensus Back     alignment and domain information
>PRK08666 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>PRK08202 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family Back     alignment and domain information
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2 Back     alignment and domain information
>TIGR03468 HpnG hopanoid-associated phosphorylase Back     alignment and domain information
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>TIGR01721 AMN-like AMP nucleosidase, putative Back     alignment and domain information
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD) Back     alignment and domain information
>PRK07115 AMP nucleosidase; Provisional Back     alignment and domain information
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR03664 fut_nucase futalosine nucleosidase Back     alignment and domain information
>PLN02584 5'-methylthioadenosine nucleosidase Back     alignment and domain information
>PRK13374 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01719 euk_UDPppase uridine phosphorylase Back     alignment and domain information
>PRK07077 hypothetical protein; Provisional Back     alignment and domain information
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>TIGR01718 Uridine-psphlse uridine phosphorylase Back     alignment and domain information
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] Back     alignment and domain information
>PRK11178 uridine phosphorylase; Provisional Back     alignment and domain information
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative Back     alignment and domain information
>TIGR01717 AMP-nucleosdse AMP nucleosidase Back     alignment and domain information
>PRK05634 nucleosidase; Provisional Back     alignment and domain information
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00715 precor6x_red precorrin-6x reductase Back     alignment and domain information
>PRK08236 hypothetical protein; Provisional Back     alignment and domain information
>PRK08292 AMP nucleosidase; Provisional Back     alignment and domain information
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms] Back     alignment and domain information
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria Back     alignment and domain information
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1cb0_A283 Structure Of Human 5'-deoxy-5'-methylthioadenosine 6e-39
1wta_A275 Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosin 4e-25
2a8y_A270 Crystal Structure Of 5'-Deoxy-5'methylthioadenosine 1e-23
1v4n_A281 Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosph 2e-23
4glf_A297 Crystal Structure Of Methylthioadenosine Phosphoryl 4e-17
3ozb_A259 Crystal Structure Of 5'-Methylthioinosine Phosphory 7e-10
3khs_A285 Crystal Structure Of Grouper Iridovirus Purine Nucl 1e-08
4ear_A324 Crystal Structure Of Purine Nucleoside Phosphorylas 6e-08
1v48_A289 Calf Spleen Purine Nucleoside Phosphorylase (Pnp) B 6e-08
1lv8_A289 Crystal Structure Of Calf Spleen Purine Nucleoside 6e-08
1b8n_A284 Purine Nucleoside Phosphorylase Length = 284 7e-08
1vfn_A281 Purine Nucleoside Phosphorylase Length = 281 7e-08
2qpl_A282 Crystal Structure Of Calf Spleen Purine Nucleoside 7e-08
3gb9_A311 Human Purine Nucleoside Phosphorylase Double Mutant 2e-07
4eb8_A324 Crystal Structure Of Purine Nucleoside Phosphorylas 2e-07
2a0x_A289 Structure Of Human Purine Nucleoside Phosphorylase 2e-07
1fxu_A289 Purine Nucleoside Phosphorylase From Calf Spleen In 2e-07
1a9o_A289 Bovine Purine Nucleoside Phosphorylase Complexed Wi 2e-07
3phb_E324 Crystal Structure Of Human Purine Nucleoside Phosph 2e-07
1pbn_A289 Purine Nucleoside Phosphorylase Length = 289 2e-07
2a0y_A289 Structure Of Human Purine Nucleoside Phosphorylase 2e-07
1pf7_E289 Crystal Structure Of Human Pnp Complexed With Immuc 2e-07
1m73_E288 Crystal Structure Of Human Pnp At 2.3a Resolution L 2e-07
2a0w_A289 Structure Of Human Purine Nucleoside Phosphorylase 2e-07
1a9q_A282 Bovine Purine Nucleoside Phosphorylase Complexed Wi 3e-07
1a9t_A284 Bovine Purine Nucleoside Phosphorylase Complexed Wi 3e-07
3la8_A303 The Crystal Structure Of Smu.1229 From Streptococcu 1e-06
1tcu_A287 Crystal Structure Of The Purine Nucleoside Phosphor 1e-05
1vmk_A277 Crystal Structure Of Purine Nucleoside Phosphorylas 2e-04
1yqq_A277 Escherichia Coli Purine Nucleoside Phosphorylase Ii 2e-04
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine Phosphorylase At 1.7 A Resolution Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 100/143 (69%)
Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           M   F   TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W A ++NMT V
Sbjct: 140 MAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTV 199
Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
           PEVVLAKEAG+ YA++AMATDYDCW++    V V  VLKT KEN  K   L +  +P+I 
Sbjct: 200 PEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIG 259
Query: 121 AKDWTNEITELKSVVETSNMSPQ 143
           + +W+  +  LK++ + S + P+
Sbjct: 260 STEWSETLHNLKNMAQFSVLLPR 282
>pdb|1WTA|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine From Aeropyrum Pernix (R32 Form) Length = 275 Back     alignment and structure
>pdb|2A8Y|A Chain A, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine Phosphorylase Complexed With 5'-Deoxy- 5'methylthioadenosine And Sulfate Length = 270 Back     alignment and structure
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Homologue From Sulfolobus Tokodaii Length = 281 Back     alignment and structure
>pdb|4GLF|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase Sourced From An Antarctic Soil Metagenomic Library Length = 297 Back     alignment and structure
>pdb|3OZB|A Chain A, Crystal Structure Of 5'-Methylthioinosine Phosphorylase From Psedomonas Aeruginosa In Complex With Hypoxanthine Length = 259 Back     alignment and structure
>pdb|3KHS|A Chain A, Crystal Structure Of Grouper Iridovirus Purine Nucleoside Phosphorylase Length = 285 Back     alignment and structure
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (w16y, W94y, W178y, H257w) Mutant From Human Complexed With Dadme-immg And Phosphate Length = 324 Back     alignment and structure
>pdb|1V48|A Chain A, Calf Spleen Purine Nucleoside Phosphorylase (Pnp) Binary Complex With 9-(5,5-Difluoro-5-Phosphonopenthyl)guanine Length = 289 Back     alignment and structure
>pdb|1LV8|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside Phosphorylase In A New Space Group With Full Trimer In The Asymmetric Unit Length = 289 Back     alignment and structure
>pdb|1B8N|A Chain A, Purine Nucleoside Phosphorylase Length = 284 Back     alignment and structure
>pdb|1VFN|A Chain A, Purine Nucleoside Phosphorylase Length = 281 Back     alignment and structure
>pdb|2QPL|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside Phosphorylase Complexed To A Novel Purine Analogue Length = 282 Back     alignment and structure
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant E201q,n243d Complexed With 2-fluoroadenine Length = 311 Back     alignment and structure
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (w16y, W94y, W178y, H257w) Mutant From Human Complexed With Dadme-immg And Phosphate Length = 324 Back     alignment and structure
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f Mutant Length = 289 Back     alignment and structure
>pdb|1FXU|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen In Complex With N(7)- Acycloguanosine Inhibitor And A Phosphate Ion Length = 289 Back     alignment and structure
>pdb|1A9O|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With Phosphate Length = 289 Back     alignment and structure
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase In Complex With Dadme-Immg Length = 324 Back     alignment and structure
>pdb|1PBN|A Chain A, Purine Nucleoside Phosphorylase Length = 289 Back     alignment and structure
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d Mutant Length = 289 Back     alignment and structure
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H Length = 289 Back     alignment and structure
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution Length = 288 Back     alignment and structure
>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g Mutant Length = 289 Back     alignment and structure
>pdb|1A9Q|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With Inosine Length = 282 Back     alignment and structure
>pdb|1A9T|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With 9-Deazainosine And Phosphate Length = 284 Back     alignment and structure
>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus Mutans Ua159 Length = 303 Back     alignment and structure
>pdb|1TCU|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase From Schistosoma Mansoni In Complex With Phosphate And Acetate Length = 287 Back     alignment and structure
>pdb|1VMK|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (Tm1596) From Thermotoga Maritima At 2.01 A Resolution Length = 277 Back     alignment and structure
>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The Product Of The Xapa Gene Length = 277 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 2e-63
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 3e-59
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 4e-59
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 4e-58
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 8e-18
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 1e-15
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 1e-15
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 2e-15
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 5e-15
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 8e-15
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 1e-14
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 2e-14
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 3e-14
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Length = 283 Back     alignment and structure
 Score =  194 bits (495), Expect = 2e-63
 Identities = 72/142 (50%), Positives = 99/142 (69%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           M   F   TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W A ++NMT V
Sbjct: 140 MAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTV 199

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
           PEVVLAKEAG+ YA++AMATDYDCW++    V V  VLKT KEN  K   L +  +P+I 
Sbjct: 200 PEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIG 259

Query: 121 AKDWTNEITELKSVVETSNMSP 142
           + +W+  +  LK++ + S + P
Sbjct: 260 STEWSETLHNLKNMAQFSVLLP 281
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Length = 259 Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Length = 270 Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Length = 275 Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Length = 287 Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Length = 324 Back     alignment and structure
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Length = 303 Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} Length = 285 Back     alignment and structure
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Length = 284 Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Length = 373 Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Length = 287 Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Length = 266 Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Length = 268 Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Length = 277 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 100.0
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 100.0
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 100.0
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 100.0
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 100.0
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 100.0
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 100.0
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 100.0
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 100.0
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 100.0
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 100.0
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 100.0
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 100.0
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 99.98
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 99.73
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 99.64
1odk_A235 Purine nucleoside phosphorylase; alpha-beta protei 99.62
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 99.62
3qpb_A282 Uridine phosphorylase; hexamer, NP-I superfamily, 99.62
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 99.61
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 99.61
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 99.6
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 99.59
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 99.59
1je0_A236 MTAP;, 5'-methylthioadenosine phosphorylase; alpha 99.58
3phc_A275 Purine nucleoside phosphorylase; PNP,immucillin, t 99.56
1ybf_A268 AMP nucleosidase; structural genomics, protein str 99.56
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 99.53
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 99.51
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 99.5
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 99.48
2b94_A267 Purine nucleoside phosphorylase; SGPP, structural 99.48
3ddo_A253 Urdpase, upase, uridine phosphorylase; transferase 99.47
4g41_A236 MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, 99.42
3mb8_A279 Purine nucleoside phosphorylase; PNP, immucillin H 99.33
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 99.21
3bje_A349 Nucleoside phosphorylase, putative; uridine phosph 97.88
3euf_A328 Uridine phosphorylase 1; nucleoside phosphorylase, 97.49
3p0f_A297 Uridine phosphorylase 2; transferase; HET: BAU; 1. 97.24
3tlq_A242 Regulatory protein YDIV; anti-FLHD4C2 factor, repr 84.92
4hjf_A340 Ggdef family protein; structural genomics, PSI-bio 82.52
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-38  Score=265.04  Aligned_cols=116  Identities=23%  Similarity=0.409  Sum_probs=103.9

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033          1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT   80 (148)
Q Consensus         1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT   80 (148)
                      |++|||++||++++++|+++|++++ +|||++++||+|||+||+||||+||||+||||++||+++|||+||||++|++||
T Consensus       188 m~~~yd~~Lr~~a~~aA~~~gi~~~-~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMst~pEa~vAre~gi~~~~Is~IT  266 (303)
T 3la8_A          188 MSNAYTADYREVAHQVADKIGIKLD-EGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAIT  266 (303)
T ss_dssp             CTTSSCHHHHHHHHHHHHHHTCCCE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCcccCHHHHHHHHHHHHHcCCceE-EEEEEEeeCCccCCHHHHHHHHHcCCCEEeccHHHHHHHHHHcCCCEEEEEEEe
Confidence            6789999999999999999999998 899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033         81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI  119 (148)
Q Consensus        81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l  119 (148)
                      |+++| . ++++||+||+++++++.+++++||.++|+++
T Consensus       267 D~a~g-~-~~~vs~eevl~~a~~~~~~~~~ll~~~i~~~  303 (303)
T 3la8_A          267 NYAAG-F-QSELNHEEVVAVTQQIKEDFKGLVKAILVEL  303 (303)
T ss_dssp             EECTT-C----------CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             ecCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999 4 5789999999999999999999999999875
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0 Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Back     alignment and structure
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Back     alignment and structure
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A* Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A* Back     alignment and structure
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Back     alignment and structure
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1 Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Back     alignment and structure
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Back     alignment and structure
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A* Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Back     alignment and structure
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Back     alignment and structure
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A* Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A* Back     alignment and structure
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Back     alignment and structure
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ... Back     alignment and structure
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes} Back     alignment and structure
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Back     alignment and structure
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei} Back     alignment and structure
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Back     alignment and structure
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A Back     alignment and structure
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli} Back     alignment and structure
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 148
d1cb0a_273 c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos 2e-35
d3pnpa_284 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 1e-32
d1g2oa_262 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 4e-32
d1qe5a_266 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 9e-28
d1v4na_266 c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos 5e-27
d1vmka_265 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 8e-26
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-35
 Identities = 71/140 (50%), Positives = 98/140 (70%)

Query: 3   PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPE 62
             F   TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W A ++NMT VPE
Sbjct: 134 EPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPE 193

Query: 63  VVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122
           VVLAKEAG+ YA++AMATDYDCW++    V V  VLKT KEN  K   L +  +P+I + 
Sbjct: 194 VVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGST 253

Query: 123 DWTNEITELKSVVETSNMSP 142
           +W+  +  LK++ + S + P
Sbjct: 254 EWSETLHNLKNMAQFSVLLP 273
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Length = 284 Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Length = 262 Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Length = 266 Back     information, alignment and structure
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Length = 266 Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
d1cb0a_273 5'-deoxy-5'-methylthioadenosine phosphorylase {Hum 100.0
d1v4na_266 5'-deoxy-5'-methylthioadenosine phosphorylase {Sul 100.0
d3pnpa_284 Purine nucleoside phosphorylase, PNP {Cow (Bos tau 100.0
d1g2oa_262 Purine nucleoside phosphorylase, PNP {Mycobacteriu 100.0
d1qe5a_266 Purine nucleoside phosphorylase, PNP {Cellulomonas 100.0
d1vmka_265 Purine nucleoside phosphorylase, PNP {Thermotoga m 100.0
d1odka_234 Purine nucleoside phosphorylase, PNP {Thermus ther 98.98
d1jysa_230 5'-Methylthioadenosine/S-Adenosylhomocysteine nucl 98.84
d1vhwa_237 Purine nucleoside phosphorylase, PNP {Vibrio chole 98.45
d1ybfa_246 AMP nucleosidase {Bacteroides thetaiotaomicron [Ta 98.41
d1q1ga_243 Putative uridine phosphorylase {Plasmodium falcipa 98.34
d1je0a_234 5'-deoxy-5'-methylthioadenosine phosphorylase {Arc 98.02
d2ac7a1231 Purine nucleoside phosphorylase, PNP {Bacillus ant 97.86
d1rxya_250 Uridine phosphorylase {Escherichia coli [TaxId: 56 97.43
d1t8sa_477 AMP nucleosidase {Escherichia coli [TaxId: 562]} 91.96
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 87.09
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=331.16  Aligned_cols=142  Identities=51%  Similarity=0.899  Sum_probs=135.1

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033          1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT   80 (148)
Q Consensus         1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT   80 (148)
                      |++|||++||+.++++|++.|++++++|||++++||+||||||+||||+||||+|||||+||+++|||+||||++||+||
T Consensus       132 ~~~~y~~~Lr~~~~~~a~~~~~~~~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMStvPEvilAre~gl~~~~is~VT  211 (273)
T d1cb0a_         132 MAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMAT  211 (273)
T ss_dssp             CSSCSCHHHHHHHHHHHHHTTCCEESCCEEEEECCSSCCCHHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cccccCHHHHHHHHHHhhhcceeeeeeeeEEEecCCccccHHHHHHHHHcCCCcccCCccHHHHHHHHcCCcEEeEEEee
Confidence            68999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHHHHhhhHhccCCC
Q psy17033         81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSP  142 (148)
Q Consensus        81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~  142 (148)
                      ||++|.++.++++||||+++++++++++++||.++|++|+.++|.+++..+|+.+++|+|||
T Consensus       212 N~aag~~~~~~~sheeV~~~~~~~~~~~~~lv~~~I~~l~~~~~~~~~~~~~~al~~si~t~  273 (273)
T d1cb0a_         212 DYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLP  273 (273)
T ss_dssp             ECTTC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTEECC
T ss_pred             cCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHhCcCCC
Confidence            99999875678999999999999999999999999999999999999999999999999997
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure