Psyllid ID: psy17035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR
Secondary Structure (PSIPRED)
cEEEEEcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHccccHEEEEEccccccc
Coil and Loop (DISEMBL)
mafvlcwsPYIVFDLLQvygyiprtqNYIAVATLIQSlaplnsaanpIIYCIFRTGNNNR
Flexible Loop (DISEMBL)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR
Low Complexity Region (SEG)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR
Disordered region (IsUnstruct)
**FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT*****
Disordered Region (DISOPRED)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNN**
Disordered Region (DISEMBL)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR
Disordered Region (DISPRO)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q868T3	506	Cardioacceleratory peptid	yes	N/A	0.883	0.104	0.716	6e-18
Q6W5P4	371	Neuropeptide S receptor O	yes	N/A	0.933	0.150	0.464	6e-10
Q56H79	371	Neuropeptide S receptor O	yes	N/A	0.933	0.150	0.464	7e-10
Q8BZP8	371	Neuropeptide S receptor O	yes	N/A	0.933	0.150	0.464	1e-09
P0C0L6	372	Neuropeptide S receptor O	yes	N/A	0.883	0.142	0.490	1e-09
P0C7U4	361	C3a anaphylatoxin chemota	yes	N/A	1.0	0.166	0.383	0.0003
Q6XKD3	403	Prostaglandin D2 receptor	no	N/A	0.866	0.129	0.388	0.0008

>sp|Q868T3|CCAPR_DROME Cardioacceleratory peptide receptor OS=Drosophila melanogaster GN=CcapR PE=2 SV=3

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 47/53 (88%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F++CWSPYI+FDLLQV+G IP +Q  IA+AT IQSLAPLNSAANP+IYC+F +
Sbjct: 358 FIICWSPYIIFDLLQVFGQIPHSQTNIAIATFIQSLAPLNSAANPLIYCLFSS 410

Binds to the cardioacceleratory peptide, which is a neuropeptide.
Drosophila melanogaster (taxid: 7227)

>sp|Q6W5P4|NPSR1_HUMAN Neuropeptide S receptor OS=Homo sapiens GN=NPSR1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTG 56
           +AF+ CWSPY +FD+L  +  +P TQ     + +IQ+L  LNSA NP+IYC+F + 
Sbjct: 281 LAFICCWSPYFLFDILDNFNLLPDTQERFYASVIIQNLPALNSAINPLIYCVFSSS 336

May be active in signaling pathway in an autocrine or paracrine fashion in several tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on cell growth. Involved in pathogenesis of asthma and other IgE-mediated diseases.

Homo sapiens (taxid: 9606)

>sp|Q56H79|NPSR1_MACMU Neuropeptide S receptor OS=Macaca mulatta GN=NPSR1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTG 56
           +AF+ CWSPY +FD+L  +  +P TQ     + +IQ+L  LNSA NP+IYC+F + 
Sbjct: 281 LAFICCWSPYFLFDILDNFNLLPDTQERFYASVIIQNLPALNSAINPLIYCVFSSS 336

May be active in signaling pathway in an autocrine or paracrine fashion in several tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on cell growth.

Macaca mulatta (taxid: 9544)

>sp|Q8BZP8|NPSR1_MOUSE Neuropeptide S receptor OS=Mus musculus GN=Npsr1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTG 56
           +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYCIF + 
Sbjct: 281 LAFICCWSPYFLFDILDNFNVLPDTKERFYASVIIQNLPALNSAINPLIYCIFSSS 336

May be active in signaling pathway in an autocrine or paracrine fashion in several tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on cell growth.

Mus musculus (taxid: 10090)

>sp|P0C0L6|NPSR1_RAT Neuropeptide S receptor OS=Rattus norvegicus GN=Npsr1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYCIF
Sbjct: 282 LAFICCWSPYFLFDMLDNFNLLPDTKERFYASVIIQNLPALNSAINPLIYCIF 334

May be active in signaling pathway in an autocrine or paracrine fashion in several tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on cell growth.

Rattus norvegicus (taxid: 10116)

>sp|P0C7U4|C3AR_DANRE C3a anaphylatoxin chemotactic receptor OS=Danio rerio GN=c3ar1 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60
           +AF LCW PY V DL++ YG    +   + V  L  SLA +NS  NP++Y        N+
Sbjct: 269 VAFFLCWMPYHVLDLIRSYGGESSSMVALKVDPLAISLAYVNSCLNPVLYVFMGQDFKNK 328

Receptor for the chemotactic and inflammatory peptide anaphylatoxin C3a. This receptor stimulates chemotaxis, granule enzyme release and superoxide anion production.

Danio rerio (taxid: 7955)

>sp|Q6XKD3|PD2R2_RAT Prostaglandin D2 receptor 2 OS=Rattus norvegicus GN=Ptgdr2 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATL--IQSLAPLNSAANPIIYCI 52
           +AF+LCW PY +F LL+   +   T   +A   L  + SLA  NS  NP++Y +
Sbjct: 252 VAFILCWGPYHIFSLLEARAHSVTTLRQLASRGLPFVTSLAFFNSVVNPLLYVL 305

Receptor for prostaglandin D2 (PGD2). Coupled to the G(i)-protein. Receptor activation may result in pertussis toxin-sensitive decreases in cAMP levels and Ca(2+) mobilization. PI3K signaling is also implicated in mediating PTGDR2 effects. PGD2 induced receptor internalization. CRTH2 internalization can be regulated by diverse kinases such as, PKC, PKA, ADRBK1/GRK2, GPRK5/GRK5 and GRK6. Receptor activation is responsible, at least in part, in immune regulation and allergic/inflammation responses.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
328713510	405	PREDICTED: cardioacceleratory peptide re	0.883	0.130	0.830	3e-19
270008192	336	hypothetical protein TcasGA2_TC013945, p	0.883	0.157	0.849	3e-19
296396897	430	CCAP receptor 2 [Tribolium castaneum]	0.883	0.123	0.849	3e-19
134031978	354	cardioacceleratory peptide receptor 2 [T	0.883	0.149	0.849	3e-19
328697986	219	PREDICTED: cardioacceleratory peptide re	0.883	0.242	0.830	4e-19
156555742	416	PREDICTED: cardioacceleratory peptide re	0.883	0.127	0.830	1e-18
340727596	407	PREDICTED: cardioacceleratory peptide re	0.883	0.130	0.830	1e-18
350425454	407	PREDICTED: cardioacceleratory peptide re	0.883	0.130	0.830	2e-18
383849776	408	PREDICTED: cardioacceleratory peptide re	0.883	0.129	0.830	2e-18
307208355	319	Cardioacceleratory peptide receptor [Har	0.883	0.166	0.811	2e-18

>gi|328713510|ref|XP_003245097.1| PREDICTED: cardioacceleratory peptide receptor-like [Acyrthosiphon pisum]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 50/53 (94%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYGYIP+TQ+ +A+AT IQSLAPLNSAANPIIYC+F T
Sbjct: 276 FILCWSPYIVFDLLQVYGYIPKTQSSVALATFIQSLAPLNSAANPIIYCLFST 328

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008192|gb|EFA04640.1| hypothetical protein TcasGA2_TC013945, partial [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           FVLCWSPYIVFDLLQVYG+IP+TQ  IA+ATLIQSLAPLNSAANP+IYC+F T
Sbjct: 277 FVLCWSPYIVFDLLQVYGHIPKTQTNIAIATLIQSLAPLNSAANPVIYCLFST 329

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296396897|gb|ADH10240.1| CCAP receptor 2 [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           FVLCWSPYIVFDLLQVYG+IP+TQ  IA+ATLIQSLAPLNSAANP+IYC+F T
Sbjct: 296 FVLCWSPYIVFDLLQVYGHIPKTQTNIAIATLIQSLAPLNSAANPVIYCLFST 348

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|134031978|ref|NP_001076795.1| cardioacceleratory peptide receptor 2 [Tribolium castaneum] gi|126116540|gb|ABN79652.1| cardioactive peptide receptor 2 [Tribolium castaneum]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           FVLCWSPYIVFDLLQVYG+IP+TQ  IA+ATLIQSLAPLNSAANP+IYC+F T
Sbjct: 295 FVLCWSPYIVFDLLQVYGHIPKTQTNIAIATLIQSLAPLNSAANPVIYCLFST 347

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697986|ref|XP_003240503.1| PREDICTED: cardioacceleratory peptide receptor-like [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 50/53 (94%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYGYIP+TQ+ +A+AT IQSLAPLNSAANPIIYC+F T
Sbjct: 90  FILCWSPYIVFDLLQVYGYIPKTQSSVALATFIQSLAPLNSAANPIIYCLFST 142

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555742|ref|XP_001602277.1| PREDICTED: cardioacceleratory peptide receptor [Nasonia vitripennis]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYG++PR+Q  IAVAT IQSLAPLNSAANPIIYC+F T
Sbjct: 293 FILCWSPYIVFDLLQVYGHVPRSQTNIAVATFIQSLAPLNSAANPIIYCLFST 345

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727596|ref|XP_003402126.1| PREDICTED: cardioacceleratory peptide receptor-like [Bombus terrestris]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 47/53 (88%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYGY+P TQ  IAVAT IQSL PLNSAANPIIYC+F T
Sbjct: 284 FILCWSPYIVFDLLQVYGYVPETQTNIAVATFIQSLTPLNSAANPIIYCLFST 336

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425454|ref|XP_003494126.1| PREDICTED: cardioacceleratory peptide receptor-like [Bombus impatiens]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 47/53 (88%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYGY+P TQ  IAVAT IQSL PLNSAANPIIYC+F T
Sbjct: 284 FILCWSPYIVFDLLQVYGYVPETQTNIAVATFIQSLTPLNSAANPIIYCLFST 336

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849776|ref|XP_003700512.1| PREDICTED: cardioacceleratory peptide receptor-like [Megachile rotundata]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 47/53 (88%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYGY+P TQ  IAVAT IQSL PLNSAANPIIYC+F T
Sbjct: 285 FILCWSPYIVFDLLQVYGYVPETQTNIAVATFIQSLTPLNSAANPIIYCLFST 337

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208355|gb|EFN85758.1| Cardioacceleratory peptide receptor [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 48/53 (90%)

Query: 3   FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRT 55
           F+LCWSPYIVFDLLQVYG++P+TQ  IAVAT IQSL PLNSAANPIIYC+F T
Sbjct: 196 FILCWSPYIVFDLLQVYGHVPKTQTNIAVATFIQSLTPLNSAANPIIYCLFST 248

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
FB|FBgn0039396	506	CcapR "Cardioacceleratory pept	0.85	0.100	0.745	1.7e-17
UNIPROTKB|F1SIK6	297	NPSR1 "Uncharacterized protein	0.883	0.178	0.471	3.3e-11
UNIPROTKB|Q6W5P4	371	NPSR1 "Neuropeptide S receptor	0.883	0.142	0.490	4.9e-11
UNIPROTKB|F1Q0I5	302	NPSR1 "Uncharacterized protein	0.883	0.175	0.471	5.9e-11
UNIPROTKB|E1BUZ1	373	NPSR1 "Uncharacterized protein	0.883	0.142	0.490	6.3e-11
UNIPROTKB|F1MJZ0	370	NPSR1 "Uncharacterized protein	0.883	0.143	0.471	8e-11
MGI|MGI:2441738	371	Npsr1 "neuropeptide S receptor	0.883	0.142	0.490	1e-10
RGD|1564154	372	Npsr1 "neuropeptide S receptor	0.883	0.142	0.490	1e-10
MGI|MGI:1330275	382	Gpr44 "G protein-coupled recep	0.833	0.130	0.423	5.1e-05
RGD|1311986	403	Ptgdr2 "prostaglandin D2 recep	0.866	0.129	0.388	5.5e-05

FB|FBgn0039396 CcapR "Cardioacceleratory peptide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 38/51 (74%), Positives = 46/51 (90%)

Query:     3 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             F++CWSPYI+FDLLQV+G IP +Q  IA+AT IQSLAPLNSAANP+IYC+F
Sbjct:   358 FIICWSPYIIFDLLQVFGQIPHSQTNIAIATFIQSLAPLNSAANPLIYCLF 408

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005000 "vasopressin receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS;NAS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA;NAS

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0018990 "ecdysis, chitin-based cuticle" evidence=TAS

UNIPROTKB|F1SIK6 NPSR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 25/53 (47%), Positives = 38/53 (71%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P T++    + +IQ+L  LNSA NP+IYC+F
Sbjct:   207 LAFICCWSPYFLFDILDNFSLLPNTKDRFYASVIIQNLPALNSAINPLIYCVF 259

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

UNIPROTKB|Q6W5P4 NPSR1 "Neuropeptide S receptor" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P TQ     + +IQ+L  LNSA NP+IYC+F
Sbjct:   281 LAFICCWSPYFLFDILDNFNLLPDTQERFYASVIIQNLPALNSAINPLIYCVF 333

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1Q0I5 NPSR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYC+F
Sbjct:   212 LAFICCWSPYFLFDILDNFSLLPDTEERFYASVIIQNLPALNSAINPLIYCVF 264

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

UNIPROTKB|E1BUZ1 NPSR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF LCWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYC+F
Sbjct:   282 LAFALCWSPYFLFDILDNFNILPETKERFYASVIIQNLPALNSAINPLIYCLF 334

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MJZ0 NPSR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYC+F
Sbjct:   280 LAFICCWSPYFLFDILDNFSLLPNTKERFYASVIIQNLPALNSAINPLIYCVF 332

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0005000 "vasopressin receptor activity" evidence=IEA

MGI|MGI:2441738 Npsr1 "neuropeptide S receptor 1" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYCIF
Sbjct:   281 LAFICCWSPYFLFDILDNFNVLPDTKERFYASVIIQNLPALNSAINPLIYCIF 333

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1564154 Npsr1 "neuropeptide S receptor 1" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             +AF+ CWSPY +FD+L  +  +P T+     + +IQ+L  LNSA NP+IYCIF
Sbjct:   282 LAFICCWSPYFLFDMLDNFNLLPDTKERFYASVIIQNLPALNSAINPLIYCIF 334

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1330275 Gpr44 "G protein-coupled receptor 44" [Mus musculus (taxid:10090)]

 Score = 104 (41.7 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATL--IQSLAPLNSAANPIIY 50
             +AFVLCW PY +F LL+   +   T   +A   L  + SLA  NS  NP++Y
Sbjct:   252 VAFVLCWGPYHIFSLLEARAHSVTTLRQLASRGLPFVTSLAFFNSVVNPLLY 303

GO:0001785 "prostaglandin J receptor activity" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=ISO;ISS;IDA

GO:0004956 "prostaglandin D receptor activity" evidence=ISO;IDA

GO:0004958 "prostaglandin F receptor activity" evidence=IDA

GO:0004982 "N-formyl peptide receptor activity" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006935 "chemotaxis" evidence=ISO;ISS;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;ISS

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=ISO;IDA

GO:0045745 "positive regulation of G-protein coupled receptor protein signaling pathway" evidence=IDA

RGD|1311986 Ptgdr2 "prostaglandin D2 receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:     1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATL--IQSLAPLNSAANPIIYCI 52
             +AF+LCW PY +F LL+   +   T   +A   L  + SLA  NS  NP++Y +
Sbjct:   252 VAFILCWGPYHIFSLLEARAHSVTTLRQLASRGLPFVTSLAFFNSVVNPLLYVL 305

GO:0001785 "prostaglandin J receptor activity" evidence=IEA;ISO

GO:0004930 "G-protein coupled receptor activity" evidence=ISO;ISS

GO:0004956 "prostaglandin D receptor activity" evidence=ISO;ISS

GO:0004958 "prostaglandin F receptor activity" evidence=IEA;ISO

GO:0004982 "N-formyl peptide receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006935 "chemotaxis" evidence=ISO;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;ISS

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=ISO;ISS

GO:0045745 "positive regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q868T3	CCAPR_DROME	No assigned EC number	0.7169	0.8833	0.1047	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	60
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-05

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 2   AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 50
            FVLCW PY +  LL     +   +       +   LA +NS  NPIIY
Sbjct: 203 VFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
PHA03234	338	DNA packaging protein UL33; Provisional	99.61
PHA03235	409	DNA packaging protein UL33; Provisional	99.49
PHA02834	323	chemokine receptor-like protein; Provisional	99.48
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.46
KOG4219|consensus	423		99.45
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.25
KOG4220|consensus	503		99.19
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.83
KOG2087|consensus	363		97.81
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.3
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	96.06
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	95.98
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	90.83
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	87.72

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.61  E-value=1.1e-16  Score=90.85  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             EEEeehhHHHHHHHHHHHcc---cCcc---hhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGY---IPRT---QNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+||++..+++....   ....   ........++..++++|||+||+||++.+++||++
T Consensus       245 vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~  309 (338)
T PHA03234        245 SFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR  309 (338)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence            58999999999887654321   1111   12234456788999999999999999999999963

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.49  E-value=4.7e-15  Score=85.92  Aligned_cols=59  Identities=24%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             EEEeehhHHHHHHHHHHHccc--C-c---chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYI--P-R---TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~--~-~---~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+||+++.++..+...  + +   .........+...++++||++||+||++++++||++
T Consensus       252 ~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~  316 (409)
T PHA03235        252 SFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKR  316 (409)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHH
Confidence            588999999999887654211  1 1   111224456778899999999999999999999973

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.48  E-value=5.1e-15  Score=83.34  Aligned_cols=59  Identities=14%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             EEEeehhHHHHHHHHHHHcccC----cc---hhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIP----RT---QNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+++..++..+.+..    +.   ........++..++++||++||+||++.+++||++
T Consensus       237 ~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~  302 (323)
T PHA02834        237 FTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKV  302 (323)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence            5789999999998876553211    11   11122345778899999999999999999999973

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.46  E-value=1.1e-14  Score=84.61  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             EEEeehhHHHHHHHHHHHccc---------Cc--chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYI---------PR--TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+...         ..  .........++..++++|||+||++|++++++||++
T Consensus       321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~  390 (417)
T PHA02638        321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMH  390 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHH
Confidence            578999999999888765311         01  112234456788999999999999999999999973

>KOG4219|consensus

Probab=99.45  E-value=9.3e-15  Score=84.17  Aligned_cols=58  Identities=29%  Similarity=0.509  Sum_probs=47.5

Q ss_pred             EEEeehhHHHHHHHHHHHccc-CcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYI-PRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      .|.+||+|+++..++....+. .........+....+++.+|+|+||+||++.|++||.
T Consensus       269 ~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~  327 (423)
T KOG4219|consen  269 IFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRG  327 (423)
T ss_pred             HHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHH
Confidence            589999999999998875432 2234455667778999999999999999999999985

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.25  E-value=1.3e-12  Score=73.57  Aligned_cols=59  Identities=17%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             EEEeehhHHHHHHHHHHHc---ccCc---chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYG---YIPR---TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||.|+.+..++....   ..+.   .........+...++.+|+++||+||++++++||++
T Consensus       252 ~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~  316 (335)
T PHA03087        252 LFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH  316 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence            4789999999987765431   1111   122334456778899999999999999999999963

>KOG4220|consensus

Probab=99.19  E-value=2.9e-13  Score=78.70  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=46.8

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      .|+++|+||.++.++..+..   ......++.+..++.|+||-+||++|++.|+.||+
T Consensus       425 AFIiTWtPYNImVlv~tFC~---~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrk  479 (503)
T KOG4220|consen  425 AFILTWTPYNIMVLVNTFCK---NCIPETLWTFGYWLCYINSTINPLCYALCNATFRK  479 (503)
T ss_pred             HHHHHcccceeeeehHhhcc---cccchhHhhhhhheeeecccccHHHHHHHhHHHHH
Confidence            58899999999999998743   23345667778899999999999999999999986

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.83  E-value=1.8e-09  Score=57.49  Aligned_cols=48  Identities=40%  Similarity=0.663  Sum_probs=39.3

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhh
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY   50 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy   50 (60)
                      +|++||+|+.+..++....+.... .......++.+++++|+++||++|
T Consensus       210 ~f~~~~~P~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  210 VFLLCWLPYFILSLLSVFSPSSSL-ISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSTSTC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceeHHHHHHHHcCccch-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence            478999999999998887654422 455667788899999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=97.81  E-value=2.7e-07  Score=53.23  Aligned_cols=54  Identities=26%  Similarity=0.490  Sum_probs=37.7

Q ss_pred             EeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          4 VLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         4 ~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      .+||.|...+.+....+..-...  .....+...+.-.|||+||+.|++.++.||+
T Consensus       245 ~icw~Pi~f~~~~al~~~~li~~--~~sk~llv~flPlns~~NP~LYa~fT~~fk~  298 (363)
T KOG2087|consen  245 CICWCPIAFFKFSALIGVELISV--SYSKWLLVFFLPLNSCLNPFLYAFFTPVFKE  298 (363)
T ss_pred             ccccCchheeeeHHhcCCcccCh--hhceeEEEEEEEcccccCchhHHHcCHHHHH
Confidence            58999999988877654211111  1111223456678999999999999999986

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.30  E-value=9.6e-05  Score=41.72  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             EEEeehhHHHHHHHHHHHcc-cC-cchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGY-IP-RTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      .|+++=+|..+..+++.... .. ..........+...+...|++.|++||.++|.|||+
T Consensus       250 ~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~  309 (318)
T PF10324_consen  250 SFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRK  309 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHH
Confidence            35667788888888877522 11 122334555677889999999999999999999997

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=96.06  E-value=0.0035  Score=29.22  Aligned_cols=55  Identities=7%  Similarity=0.248  Sum_probs=36.6

Q ss_pred             EEEeehh-HHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCcc
Q psy17035          2 AFVLCWS-PYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNN   58 (60)
Q Consensus         2 ~f~~~w~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr   58 (60)
                      +|+++|+ |+..-.+-...+.  ...+...+..+...+..+|+.+|-++|.+.-|.-|
T Consensus        20 ~Yi~lwlfP~~~~~~~~~~~~--~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~   75 (76)
T PF11970_consen   20 VYIVLWLFPFAAHRMQYMYEI--GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR   75 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence            4678898 8776555444221  22333445566778889999999999998766544

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.98  E-value=0.0042  Score=34.59  Aligned_cols=58  Identities=7%  Similarity=0.142  Sum_probs=37.6

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      .|+..|.=-.+...+....+.+ ............++...|.+.|-.+|.+.|+|||++
T Consensus       195 i~i~~w~~s~~~~~v~~~~~~~-~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~a  252 (257)
T PF10320_consen  195 IFIFSWFLSQIINTVSLALGLD-GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKA  252 (257)
T ss_pred             eeeHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHH
Confidence            4556666555555444332211 222333444567889999999999999999999974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=90.83  E-value=0.11  Score=29.96  Aligned_cols=52  Identities=21%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCcc
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNN   58 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr   58 (60)
                      +|++||+|-.+-.+.+..+..+   .....++  ..++-+....|.++|...++..+
T Consensus       210 ifiicw~fa~INRI~~~~~~~~---~~l~~Lh--~~~s~lqGf~nsivy~~n~~~~~  261 (303)
T PF05462_consen  210 IFIICWIFATINRIYNFIGKNP---FWLSVLH--VGFSPLQGFFNSIVYGYNNSLMW  261 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCc---hHHHHHH--HHHHHHHHHHHHHHHHhCCHHHH
Confidence            5788999998888888765322   2222222  34666778889999998877533

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=87.72  E-value=0.31  Score=29.30  Aligned_cols=18  Identities=39%  Similarity=0.942  Sum_probs=14.2

Q ss_pred             EEEeehhHHHHHHHHHHH
Q psy17035          2 AFVLCWSPYIVFDLLQVY   19 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~   19 (60)
                      +|.+||+|..+-.++-.+
T Consensus       252 VF~iCWlpNIINg~LL~~  269 (405)
T PF02101_consen  252 VFYICWLPNIINGSLLFY  269 (405)
T ss_pred             HHHHHhhhhhHhHHHHHH
Confidence            688999999988775543

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	2e-10
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	6e-08
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	9e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-05
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-05
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	4e-05
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	7e-05
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	7e-05
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-04
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-04
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-04
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	4e-04

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 45.8 bits (109), Expect = 6e-08
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1   MAFVLCWSPYIVFDLLQVYGY-IPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             F +CW P+ +F LL      +   +    V   I  LA  ++  NPIIYC  
Sbjct: 255 CTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCL 308

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 45.4 bits (107), Expect = 9e-08
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             F++CW+P  ++ +++    IP T           +L   NS  NP++Y   
Sbjct: 390 AVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFL 442

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             F+L WSPY V  LL  +G +     Y A   ++   A  ++  NP+IY + 
Sbjct: 268 SQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVM--FAKASAIHNPMIYSVS 318

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           +AF++CW PY                            A  ++  NP+IY + 
Sbjct: 260 IAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--FAKTSAVYNPVIYIMM 310

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 37.9 bits (87), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
             F+ CW+P  +  LL V     +T + +  A     LA LNS  NPIIY + 
Sbjct: 428 SVFIACWAPLFILLLLDVGCK-VKTCDILFRAEYFLVLAVLNSGTNPIIYTLT 479

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 37.4 bits (86), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 2   AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           AF++CW P+ +  +L    +         + +    L  +NSA NP+IY  F
Sbjct: 409 AFIVCWLPFFLTHVLN--THCQTCHVSPELYSATTWLGYVNSALNPVIYTTF 458

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 37.0 bits (85), Expect = 7e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 2   AFVLCWSPYIVFDLLQVY-GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
            F LCW P  + +    +         ++    ++  L+  NS  NP IY   
Sbjct: 403 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV--LSHTNSVVNPFIYAYR 453

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 1   MAFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           +AF++ W+PY V  L+  +    IP T     V T+   L  +NS  NP  Y + 
Sbjct: 395 LAFIITWAPYNVMVLINTFCAPCIPNT-----VWTIGYWLCYINSTINPACYALC 444

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 35.8 bits (82), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 2   AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           AF+LCW PY +F +  V  +     N   +      L  +NS  NP+IY + 
Sbjct: 381 AFILCWIPYFIFFM--VIAFCKNCCNEH-LHMFTIWLGYINSTLNPLIYPLC 429

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 35.5 bits (81), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 2   AFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
            F LCW P+ + +++ V     I +      V  L+  +  +NS  NP+IYC
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIYC 462

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 35.0 bits (80), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 2   AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
            F LCW P  + +    +           +  L   L+  NS  NP IY   
Sbjct: 362 LFALCWLPLHIINCFTFFCPDCSHAPLW-LMYLAIVLSHTNSVVNPFIYAYR 412

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.74
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.63
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.58
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.57
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.55
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.53
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.47
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.46
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.45
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.44
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.43
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.41
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.39
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.32
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.32
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.3
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.24
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.23
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.11
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	97.64

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.74  E-value=3.3e-19  Score=103.15  Aligned_cols=59  Identities=34%  Similarity=0.475  Sum_probs=46.5

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcch-----hHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQ-----NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+||+++.++..+.......     ....+..++.+++++||++||+||+++|++||++
T Consensus       417 ~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~a  480 (510)
T 4grv_A          417 AFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV  480 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            5899999999999998774322211     1223456778899999999999999999999985

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=90.71  Aligned_cols=59  Identities=15%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             EEEeehhHHHHHHHHHHHcc--cCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGY--IPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.++.++..+..  ............++.+++++||++||+||++++++||++
T Consensus       398 ~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~  458 (484)
T 3vw7_A          398 IFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRY  458 (484)
T ss_dssp             HHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC---
T ss_pred             HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHH
Confidence            58899999999999886542  222334445666788999999999999999999999985

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.58  E-value=1.4e-16  Score=90.09  Aligned_cols=59  Identities=22%  Similarity=0.477  Sum_probs=49.8

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+...+..........++.+++++||++||+||++++++||++
T Consensus       391 ~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~  449 (464)
T 4dkl_A          391 VFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRC  449 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHH
Confidence            58899999999999988765455555556667788899999999999999999999973

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.57  E-value=1.3e-16  Score=91.94  Aligned_cols=55  Identities=27%  Similarity=0.533  Sum_probs=44.6

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|++++.++..+...   .....+..+..+++++||++||+||++ +++||++
T Consensus       416 ~F~icWlP~~i~~l~~~~~~~---~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~a  470 (500)
T 2rh1_A          416 TFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIA  470 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHH
Confidence            589999999999999887532   122345667788999999999999996 9999974

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.55  E-value=4.6e-16  Score=84.51  Aligned_cols=59  Identities=29%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcch-------hHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQ-------NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+.......       .......++.+++++||++||+||++.++|||++
T Consensus       222 ~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~  287 (296)
T 2lnl_A          222 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG  287 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHH
T ss_pred             heeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            5789999999999988774322111       1123456778899999999999999999999974

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.53  E-value=1.8e-15  Score=86.40  Aligned_cols=59  Identities=20%  Similarity=0.438  Sum_probs=45.9

Q ss_pred             EEEeehhHHHHHHHHHHHcccC---c----chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIP---R----TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.++.++..+....   .    ......+..++.+++++||++||+||++++++||++
T Consensus       421 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~  486 (502)
T 3odu_A          421 AFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTS  486 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCC
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHH
Confidence            5889999999999887753111   1    122334456788999999999999999999999985

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.47  E-value=9.3e-16  Score=88.91  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=43.5

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      +|++||+|++++.++..+....... ......+..+++++||++||+||++++++||+
T Consensus       429 ~F~vcw~P~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~  485 (520)
T 3v2y_A          429 VFIACWAPLFILLLLDVGCKVKTCD-ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRR  485 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCTTTCS-TTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            5889999999999998765322211 11223345679999999999999999999996

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.46  E-value=2.7e-15  Score=85.20  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.++.++..+..... ........++.+++++|+++||+||++++++||++
T Consensus       403 ~F~icw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~  460 (488)
T 3eml_A          403 LFALCWLPLHIINCFTFFCPDCS-HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT  460 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHhccCccc-cccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHH
Confidence            58899999999999988754222 22233455677899999999999999999999973

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.45  E-value=6.2e-15  Score=83.50  Aligned_cols=56  Identities=27%  Similarity=0.376  Sum_probs=45.9

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.++.++..+....   .......+..+++++|+++||+||++++++||++
T Consensus       396 ~F~icw~P~~i~~~~~~~~~~~---~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~  451 (467)
T 3uon_A          396 AFIITWAPYNVMVLINTFCAPC---IPNTVWTIGYWLCYINSTINPACYALCNATFKKT  451 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSTT---SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHH
Confidence            5889999999999998875422   1234556778899999999999999999999973

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.44  E-value=3.2e-15  Score=84.99  Aligned_cols=57  Identities=26%  Similarity=0.456  Sum_probs=45.5

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+....  ........+..+++++|+++||+||++++++||++
T Consensus       409 ~F~icw~P~~i~~~~~~~~~~~--~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~  465 (481)
T 3pbl_A          409 AFIVCWLPFFLTHVLNTHCQTC--HVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKA  465 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHhccccc--cCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHH
Confidence            5889999999999988764321  22234556678899999999999999999999973

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.43  E-value=6.4e-15  Score=83.09  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+..... ........++.+++++||++||+||++++++||++
T Consensus       362 ~F~icw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~  419 (447)
T 4eiy_A          362 LFALCWLPLHIINCFTFFCPDCS-HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT  419 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hhheeccHHHHHHHHHHhcCccc-ccchHHHHHHHHHHHHHhccchhhhHhccHHHHHH
Confidence            58899999999999888753211 12233455678899999999999999999999973

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.41  E-value=9.5e-15  Score=82.47  Aligned_cols=56  Identities=27%  Similarity=0.507  Sum_probs=44.3

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+......   .....+..+++++|+++||+||++++++||++
T Consensus       381 ~f~icwlP~~i~~l~~~~~~~~~~---~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~  436 (452)
T 3rze_A          381 AFILCWIPYFIFFMVIAFCKNCCN---EHLHMFTIWLGYINSTLNPLIYPLCNENFKKT  436 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSC---TTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhcccchhhhhccHHHHHH
Confidence            588999999999998877432222   12334677899999999999999999999973

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.32  E-value=7.6e-14  Score=77.23  Aligned_cols=59  Identities=29%  Similarity=0.415  Sum_probs=44.9

Q ss_pred             EEEeehhHHHHHHHHHHHcccCc-chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPR-TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+..... .........+..+++++|+++||+||++.+++||++
T Consensus       256 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~  315 (364)
T 2ks9_A          256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG  315 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            57899999999998887643221 111233445677899999999999999999999973

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.32  E-value=1.1e-13  Score=75.98  Aligned_cols=57  Identities=23%  Similarity=0.346  Sum_probs=44.1

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++.........  ......+..+++++|+++||++|.+.+++||++
T Consensus       261 ~f~i~~~P~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~  317 (349)
T 1u19_A          261 AFLICWLPYAGVAFYIFTHQGSDF--GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC  317 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhHhheecCCccc--chHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            478999999999888776432221  123445677899999999999999999999973

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.30  E-value=1.3e-13  Score=74.60  Aligned_cols=55  Identities=29%  Similarity=0.528  Sum_probs=43.1

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..++.....   .....+..+++++||++||++|. .+++||++
T Consensus       240 ~f~i~~~P~~i~~~~~~~~~~~~~---~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~  294 (315)
T 4amj_A          240 VFTLCWLPFFLVNIVNVFNRDLVP---DWLFVAFNWLGYANSAMNPIIYC-RSPDFRKA  294 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSSC---HHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHhccccHHHHc-CcHHHHHH
Confidence            478999999999998877542221   23445567789999999999999 89999973

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.24  E-value=4.4e-13  Score=76.16  Aligned_cols=57  Identities=30%  Similarity=0.473  Sum_probs=44.2

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++..+.....  .......+..+++++|+++||+||.+++++||++
T Consensus       269 ~F~i~~~P~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~  325 (448)
T 2z73_A          269 QFLLSWSPYAVVALLAQFGPLEW--VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA  325 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGG--CCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHhCCccc--CChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHH
Confidence            57899999999998887653211  1123445567899999999999999999999973

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.23  E-value=4.1e-13  Score=77.59  Aligned_cols=54  Identities=28%  Similarity=0.539  Sum_probs=42.8

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      +|++||+|+.+..++..+.....   ......++.+++++||++||+||. ++++||+
T Consensus       430 ~F~lcwlP~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~  483 (514)
T 3sn6_R          430 TFTLCWLPFFIVNIVHVIQDNLI---RKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI  483 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSS---CHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccccc---chHHHHHHHHHHHHHHhhhHHhhc-CCHHHHH
Confidence            48899999999999887643222   123455677899999999999999 8999996

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.11  E-value=3.6e-12  Score=51.96  Aligned_cols=28  Identities=32%  Similarity=0.441  Sum_probs=24.8

Q ss_pred             HHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035         32 ATLIQSLAPLNSAANPIIYCIFRTGNNN   59 (60)
Q Consensus        32 ~~~~~~l~~~ns~~nP~iy~~~~~~fr~   59 (60)
                      ..++.+++++||++||+||++.+++||+
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~   30 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRH   30 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3456789999999999999999999986

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=97.64  E-value=5.8e-07  Score=34.90  Aligned_cols=16  Identities=19%  Similarity=0.731  Sum_probs=13.1

Q ss_pred             EEEeehhHHHHHHHHH
Q psy17035          2 AFVLCWSPYIVFDLLQ   17 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~   17 (60)
                      +|++||+||++..++.
T Consensus        14 ~F~icW~P~~i~~~~~   29 (33)
T 2ki9_A           14 VLLICWFPVLALMAHS   29 (33)
T ss_dssp             HHTTTSSHHHHHHTTT
T ss_pred             HHHHHHhHHHHHHHHH
Confidence            5889999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	60
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-04

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.2 bits (77), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           +AF++CW PY                            A  ++  NP+IY + 
Sbjct: 259 IAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--FAKTSAVYNPVIYIMM 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.32

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=4.8e-14  Score=76.28  Aligned_cols=57  Identities=23%  Similarity=0.346  Sum_probs=44.4

Q ss_pred             EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035          2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR   60 (60)
Q Consensus         2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~   60 (60)
                      +|++||+|+.+..++.........  ......+..+++.+|+++||+||.+++++||++
T Consensus       260 ~f~~~~~P~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~  316 (348)
T d1u19a_         260 AFLICWLPYAGVAFYIFTHQGSDF--GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC  316 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhhHHHhhhheeeccCCccc--cHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            578999999998887766432222  233445677899999999999999999999973