Psyllid ID: psy17040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MATTSLRSILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSYG
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccHHHHHHccccccEEEEccccHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHcccccccEEEEEEccccccccEccccccccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHcccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MATTSLRSILTRgwnlvepdvyLGFISTITWIVLFLTISMLVItsstlfsprVMLFIFALPVMQVILFCLAigrdptglHLAIVNQEMdwatkacpvlsncsfthlscrylnslpndtiikdyypdpesainAVRVGDAWGALYFTDNFTDALVARMVLgrdadeetldqSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLstcdqnpkiadipiqfkepiygsndpsftdfvapgVILTIVFFLAVALTSSALIIERMEGLldrswvagvtpLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLyngnkkqdsyg
Flexible Loop (DISEMBL)
mattslrsilTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEwklyngnkkqdsyg
Low Complexity Region (SEG)
MATTSLRSILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSYG
Disordered region (IsUnstruct)
******RSILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYN*********
Disordered Region (DISOPRED)
****************VEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFA****************PIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK******
Disordered Region (DISEMBL)
MATTSLRSILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSYG
Disordered Region (DISPRO)
*****L*SILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTSLRSILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q8T674	730	ABC transporter G family	yes	N/A	0.714	0.346	0.281	7e-25
Q55EH8	701	ABC transporter G family	no	N/A	0.706	0.356	0.261	3e-23

>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 28/281 (9%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           V+ F    P +QV+L+ LAIG  P  L   +VN ++       P+ S          Y+N
Sbjct: 365 VLSFELLSPSVQVLLYFLAIGGSPKNLEFGVVNLDVG------PIGS---------MYIN 409

Query: 113 SLPNDTIIKDY-YPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
           SL N  I   + Y     AI  ++ G+++G L     F++A++   +     +       
Sbjct: 410 SLSNTGIFNFHNYNSTTEAIEQIKSGNSFGLLDINAQFSEAILENFMNLSQYNP----NG 465

Query: 172 EIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGSNDP 230
           +I +++D +N QI L++ + L LS+   A+       Q   I   PI+   P +YG+ + 
Sbjct: 466 QIDLYMDFTNYQITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGNPNS 518

Query: 231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVV 290
            F DF+APG++  I F  A+++TS + + E+++G LDR +  GV    I+F H +    +
Sbjct: 519 KFIDFLAPGMVCLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGHLPL 578

Query: 291 MCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
           +  Q  ++L+  I+ F V  +G++ LV ++T+     GM  
Sbjct: 579 LLVQITVLLLIAIYGFNVPIEGNIALVFLMTVSLAFVGMSL 619

Dictyostelium discoideum (taxid: 44689)

>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 29/279 (10%)

Query: 54  MLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNS 113
           ++F    P + + LF LAIG  P  L   I N  +D  +             LS  ++N+
Sbjct: 337 LVFEIISPSLLITLFFLAIGNVPHDLKFGIKN--IDSGS-------------LSGDFINA 381

Query: 114 LPNDTIIKDYYP--DPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
           L +   I ++    D  +AI  +   D WG +    NFT+ ++ ++    +  E++ + S
Sbjct: 382 LSDGNNIFNFIQINDTSNAIQMIESSDLWGLIDIPVNFTNGMINKLF---NPLEKSFENS 438

Query: 172 EIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPS 231
           E+ +++D+SN Q+ LM++   Q ++   A D          I  +P  F   +YG  + +
Sbjct: 439 EMEIYMDLSNFQMNLMVDVQFQKAFNKIAND--------SGIKLLPTNF-HAVYGDQNAN 489

Query: 232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM 291
           F  F+AP +I  I +   +   S   + E+ +G  DR  + GV+P+  +  H++    ++
Sbjct: 490 FNWFLAPAMICIITYVHCMNFLSITFVREKNDGTRDRILLYGVSPVSNVLGHILAHIPIL 549

Query: 292 CGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMC 330
             Q ++ L+  +F FGV  KG+++L+ +  IL    GMC
Sbjct: 550 LVQFSIQLLIAVFAFGVPIKGNIVLIYLFFILINTVGMC 588

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
193700092	811	PREDICTED: ABC transporter G family memb	0.793	0.346	0.868	1e-144
328718628	781	PREDICTED: ABC transporter G family memb	0.793	0.359	0.868	1e-144
345496012	768	PREDICTED: ABC transporter G family memb	0.793	0.365	0.843	1e-138
322789827	809	hypothetical protein SINV_01380 [Solenop	0.793	0.347	0.839	1e-137
332027462	763	ABC transporter G family member 20 [Acro	0.793	0.368	0.836	1e-136
242005365	779	ABC transporter, putative [Pediculus hum	0.790	0.359	0.829	1e-134
307196735	760	ABC transporter G family member 20 [Harp	0.793	0.369	0.809	1e-132
91090998	792	PREDICTED: similar to AGAP003680-PA [Tri	0.793	0.354	0.799	1e-131
270013184	767	hypothetical protein TcasGA2_TC011755 [T	0.793	0.366	0.799	1e-131
383851824	759	PREDICTED: ABC transporter G family memb	0.793	0.370	0.804	1e-131

>gi|193700092|ref|XP_001951744.1| PREDICTED: ABC transporter G family member 20-like isoform 1 [Acyrthosiphon pisum]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 262/281 (93%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGLHLA+VN+EM+W TKACP+  NC+    SCRYLN
Sbjct: 433 VMLFIFALPVMQVILFCLAIGRDPTGLHLAVVNKEMNWETKACPIYDNCTLEMFSCRYLN 492

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
           +LP DT+I DYY  PE+AINAV+VGDAWGALYFT+NFTDALVARM LGR++DEETLDQSE
Sbjct: 493 ALPKDTVILDYYDSPETAINAVKVGDAWGALYFTENFTDALVARMALGRESDEETLDQSE 552

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           +RVWLDMSNQQIGLMLNRDLQLSYRDF Q LLS+C+QNPK+ADIPIQFKEPIYGS+DPSF
Sbjct: 553 VRVWLDMSNQQIGLMLNRDLQLSYRDFGQGLLSSCEQNPKLADIPIQFKEPIYGSSDPSF 612

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTPLEILFSHVITQFVVMC
Sbjct: 613 TDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPLEILFSHVITQFVVMC 672

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VFGVECKGD+ LVI LTILQGLCGMCF F
Sbjct: 673 GQTALVLIFMIIVFGVECKGDITLVITLTILQGLCGMCFGF 713

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718628|ref|XP_003246532.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Acyrthosiphon pisum] gi|328718630|ref|XP_003246533.1| PREDICTED: ABC transporter G family member 20-like isoform 3 [Acyrthosiphon pisum]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 262/281 (93%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGLHLA+VN+EM+W TKACP+  NC+    SCRYLN
Sbjct: 403 VMLFIFALPVMQVILFCLAIGRDPTGLHLAVVNKEMNWETKACPIYDNCTLEMFSCRYLN 462

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
           +LP DT+I DYY  PE+AINAV+VGDAWGALYFT+NFTDALVARM LGR++DEETLDQSE
Sbjct: 463 ALPKDTVILDYYDSPETAINAVKVGDAWGALYFTENFTDALVARMALGRESDEETLDQSE 522

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           +RVWLDMSNQQIGLMLNRDLQLSYRDF Q LLS+C+QNPK+ADIPIQFKEPIYGS+DPSF
Sbjct: 523 VRVWLDMSNQQIGLMLNRDLQLSYRDFGQGLLSSCEQNPKLADIPIQFKEPIYGSSDPSF 582

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTPLEILFSHVITQFVVMC
Sbjct: 583 TDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPLEILFSHVITQFVVMC 642

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VFGVECKGD+ LVI LTILQGLCGMCF F
Sbjct: 643 GQTALVLIFMIIVFGVECKGDITLVITLTILQGLCGMCFGF 683

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496012|ref|XP_001604973.2| PREDICTED: ABC transporter G family member 20-like isoform 1 [Nasonia vitripennis] gi|345496014|ref|XP_003427623.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Nasonia vitripennis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/281 (84%), Positives = 259/281 (92%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN EM+W  K+CPV  +C+FT+LSCRYL 
Sbjct: 390 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEMNWENKSCPVSEDCTFTYLSCRYLK 449

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
            L N+T+IK+YYPDPESA  AVR G AWG LYFT+NFTDALVARM+LG++ADEETLDQSE
Sbjct: 450 FLDNETMIKEYYPDPESAREAVRRGKAWGTLYFTENFTDALVARMLLGKEADEETLDQSE 509

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           IRVWLDMSNQQIGLML R+LQ SYRDFA+DLLSTCDQN K+AD+PIQFK+PIYGSN+PSF
Sbjct: 510 IRVWLDMSNQQIGLMLARNLQYSYRDFAKDLLSTCDQNSKLADVPIQFKDPIYGSNEPSF 569

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMC
Sbjct: 570 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMC 629

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VFGVECKGD+  VI+LTILQGLCGMCF F
Sbjct: 630 GQTALVLIFMILVFGVECKGDIGWVIVLTILQGLCGMCFGF 670

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789827|gb|EFZ14974.1| hypothetical protein SINV_01380 [Solenopsis invicta]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/281 (83%), Positives = 258/281 (91%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN EM +    CPV +NCSFTHLSCRYLN
Sbjct: 431 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEMFYENMTCPVSTNCSFTHLSCRYLN 490

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
            L N+T+IK YYPDPESA+ AVR G+AWG LYFT+NFTDALVARM LGRD+D+ETLDQSE
Sbjct: 491 FLDNETMIKTYYPDPESAMEAVRRGEAWGTLYFTENFTDALVARMALGRDSDDETLDQSE 550

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           IRVWLDMSNQQ+GLML R+LQ SYRDFA+DLLS+C+QN K+AD+PIQFK+PIYG+N+PSF
Sbjct: 551 IRVWLDMSNQQVGLMLARNLQYSYRDFAKDLLSSCEQNTKLADVPIQFKKPIYGTNEPSF 610

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMC
Sbjct: 611 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMC 670

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VFGVECKGD+  VIILTILQGLCGMCF F
Sbjct: 671 GQTALVLIFMILVFGVECKGDIGWVIILTILQGLCGMCFGF 711

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027462|gb|EGI67545.1| ABC transporter G family member 20 [Acromyrmex echinatior]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/281 (83%), Positives = 257/281 (91%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN E+ +    CPV +NCSFT LSCRYLN
Sbjct: 385 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEIFYENMTCPVSTNCSFTFLSCRYLN 444

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
            L N+T+IK YYPDPESA+ AVR GDAWG LYFT+NFTDALVARM LGRD+D+ETLDQSE
Sbjct: 445 FLDNETMIKVYYPDPESAMEAVRKGDAWGTLYFTENFTDALVARMALGRDSDDETLDQSE 504

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           IRVWLDMSNQQ+GLML R+LQ +YRDFA+DLLS+C+QN K+AD+PIQFKEPIYG+N+PSF
Sbjct: 505 IRVWLDMSNQQVGLMLARNLQYTYRDFAKDLLSSCEQNTKLADVPIQFKEPIYGTNEPSF 564

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV+TQFVVMC
Sbjct: 565 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPGEILFSHVVTQFVVMC 624

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VFGVECKGD+  VIILTILQGLCGMCF F
Sbjct: 625 GQTALVLIFMILVFGVECKGDIGWVIILTILQGLCGMCFGF 665

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005365|ref|XP_002423539.1| ABC transporter, putative [Pediculus humanus corporis] gi|212506668|gb|EEB10801.1| ABC transporter, putative [Pediculus humanus corporis]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/281 (82%), Positives = 255/281 (90%), Gaps = 1/281 (0%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN EMD++T  CP   NCSF +LSCRYL+
Sbjct: 402 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEMDYSTMECPFSKNCSFANLSCRYLS 461

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
            L N+TIIK+Y+  PE A++AV+ GDAWGALYFT+NFTDALVARM LGRDADEETLDQSE
Sbjct: 462 HL-NNTIIKEYFETPEDALDAVKSGDAWGALYFTENFTDALVARMALGRDADEETLDQSE 520

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           IRVWLDMSNQQIGLMLNRDLQL+YR FAQD+L+ C+ NPK+ADIPIQFK+PIYGS+DPSF
Sbjct: 521 IRVWLDMSNQQIGLMLNRDLQLTYRTFAQDVLTECEHNPKLADIPIQFKDPIYGSSDPSF 580

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSSALIIER EGLLDRSWVAGVTP+EILFSHV+TQFVVMC
Sbjct: 581 TDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVTPVEILFSHVVTQFVVMC 640

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VF VEC G L  ++ILTILQGLCGMCF F
Sbjct: 641 GQTALVLIFMICVFQVECHGPLHWIVILTILQGLCGMCFGF 681

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196735|gb|EFN78194.1| ABC transporter G family member 20 [Harpegnathos saltator]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/283 (80%), Positives = 255/283 (90%), Gaps = 2/283 (0%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVNQEM +    CP+  +C+FT+LSCRYL 
Sbjct: 380 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNQEMFYENLTCPISEDCTFTYLSCRYLK 439

Query: 113 SLPNDTIIK--DYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQ 170
            L N+T+IK   YYP+P+SAI AVR G AWGALYFT+NFTDALVARM LG+D+D+ETLDQ
Sbjct: 440 FLDNETMIKACTYYPNPDSAIEAVRTGQAWGALYFTENFTDALVARMALGKDSDDETLDQ 499

Query: 171 SEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDP 230
           SEI+VWLDMSNQQIGLML+R+LQ SYRDF +DLLS+C+QN K+AD+PIQF++PIYGSNDP
Sbjct: 500 SEIKVWLDMSNQQIGLMLSRNLQYSYRDFVKDLLSSCNQNTKVADVPIQFEDPIYGSNDP 559

Query: 231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVV 290
           SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGV+P EILFSHV TQFVV
Sbjct: 560 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVSPSEILFSHVATQFVV 619

Query: 291 MCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           MCGQTALVLIFMI VFGVECKGD+  VI+LTILQG CGMCF F
Sbjct: 620 MCGQTALVLIFMILVFGVECKGDIGWVIVLTILQGFCGMCFGF 662

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090998|ref|XP_974932.1| PREDICTED: similar to AGAP003680-PA [Tribolium castaneum]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/284 (79%), Positives = 253/284 (89%), Gaps = 3/284 (1%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKA---CPVLSNCSFTHLSCR 109
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN E ++  ++   C     C F++LSCR
Sbjct: 411 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEKNYTNQSYQECSFDYGCKFSYLSCR 470

Query: 110 YLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLD 169
           YLN+L N TI+K+YYPDPESA++AV+ G AWGALYFT+NFTDALVARM LG+DAD ETLD
Sbjct: 471 YLNNLRNSTILKEYYPDPESAVDAVKQGHAWGALYFTENFTDALVARMALGKDADPETLD 530

Query: 170 QSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSND 229
           QSE+RVWLDMSNQQIG++L RDLQLSY+DFA+DLL  C+QNP +A+IPI FKEPIYGSN 
Sbjct: 531 QSEVRVWLDMSNQQIGIILQRDLQLSYQDFAKDLLGACEQNPDLAEIPISFKEPIYGSNK 590

Query: 230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFV 289
           PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTP EILFSHV+TQFV
Sbjct: 591 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPGEILFSHVVTQFV 650

Query: 290 VMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           VMCGQTALVLIFMI VFGV+CKGD+  VI+LTILQGLCGMCF F
Sbjct: 651 VMCGQTALVLIFMILVFGVQCKGDIGWVIVLTILQGLCGMCFGF 694

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013184|gb|EFA09632.1| hypothetical protein TcasGA2_TC011755 [Tribolium castaneum]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/284 (79%), Positives = 253/284 (89%), Gaps = 3/284 (1%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKA---CPVLSNCSFTHLSCR 109
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN E ++  ++   C     C F++LSCR
Sbjct: 386 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEKNYTNQSYQECSFDYGCKFSYLSCR 445

Query: 110 YLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLD 169
           YLN+L N TI+K+YYPDPESA++AV+ G AWGALYFT+NFTDALVARM LG+DAD ETLD
Sbjct: 446 YLNNLRNSTILKEYYPDPESAVDAVKQGHAWGALYFTENFTDALVARMALGKDADPETLD 505

Query: 170 QSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSND 229
           QSE+RVWLDMSNQQIG++L RDLQLSY+DFA+DLL  C+QNP +A+IPI FKEPIYGSN 
Sbjct: 506 QSEVRVWLDMSNQQIGIILQRDLQLSYQDFAKDLLGACEQNPDLAEIPISFKEPIYGSNK 565

Query: 230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFV 289
           PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTP EILFSHV+TQFV
Sbjct: 566 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPGEILFSHVVTQFV 625

Query: 290 VMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           VMCGQTALVLIFMI VFGV+CKGD+  VI+LTILQGLCGMCF F
Sbjct: 626 VMCGQTALVLIFMILVFGVQCKGDIGWVIVLTILQGLCGMCFGF 669

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851824|ref|XP_003701431.1| PREDICTED: ABC transporter G family member 23-like [Megachile rotundata]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/281 (80%), Positives = 252/281 (89%)

Query: 53  VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
           VMLFIFALPVMQVILFCLAIGRDPTGL LAIVN EM +   +CPV  +C+F+HLSCRYL 
Sbjct: 381 VMLFIFALPVMQVILFCLAIGRDPTGLKLAIVNHEMFYGNMSCPVTDDCNFSHLSCRYLK 440

Query: 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 172
            L N+T+ K+YY D ++A+ AVR G+AWG LYFT+NFTDALVARM LGRDADEETLDQSE
Sbjct: 441 FLDNETMTKEYYEDLDAAMGAVRDGNAWGTLYFTENFTDALVARMALGRDADEETLDQSE 500

Query: 173 IRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSF 232
           IRVWLDMSNQQIGLML R+LQ SYRDFA+DLL +C+QN K+AD+PIQFK+PIYG+++PSF
Sbjct: 501 IRVWLDMSNQQIGLMLARNLQYSYRDFAKDLLKSCEQNTKLADVPIQFKDPIYGTDEPSF 560

Query: 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 292
           TDFVAPGVILTIVFFLAVALTSS LIIERMEGLLDRSWVAGVTP EILFSHV+TQFVVMC
Sbjct: 561 TDFVAPGVILTIVFFLAVALTSSVLIIERMEGLLDRSWVAGVTPGEILFSHVVTQFVVMC 620

Query: 293 GQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
           GQTALVLIFMI VF VECKGD+  VI+LTILQGLCGMCF F
Sbjct: 621 GQTALVLIFMILVFNVECKGDIGWVIVLTILQGLCGMCFGF 661

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
FB|FBgn0039594	808	CG9990 [Drosophila melanogaste	0.790	0.346	0.712	3.6e-105
FB|FBgn0053970	777	CG33970 [Drosophila melanogast	0.793	0.361	0.508	2.3e-71
ZFIN|ZDB-GENE-050517-42	705	abch1 "ATP-binding cassette, s	0.765	0.384	0.380	7.7e-48
FB|FBgn0031734	711	CG11147 [Drosophila melanogast	0.802	0.399	0.335	1.6e-46
DICTYBASE|DDB_G0269026	701	abcG23 "ABC transporter G fami	0.624	0.315	0.259	5.5e-21
DICTYBASE|DDB_G0267430	730	abcG20 "ABC transporter G fami	0.590	0.286	0.283	6.5e-20
TIGR_CMR|DET_0814	241	DET_0814 "ABC transporter, per	0.268	0.394	0.284	8.7e-08
TIGR_CMR|DET_0795	339	DET_0795 "ABC transporter, per	0.319	0.333	0.275	9.3e-07
TIGR_CMR|DET_0519	365	DET_0519 "ABC transporter, per	0.361	0.350	0.248	6.1e-05
UNIPROTKB|P0AFP9	368	ybhR [Escherichia coli K-12 (t	0.440	0.423	0.236	0.00018

FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 201/282 (71%), Positives = 233/282 (82%)

Query:    53 VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEM-DWATKACPVLSNCSFTHLSCRYL 111
             VMLFIFALPVMQVILFCLAIGRDP GL+LAIVN EM D   + C     C F +L CRYL
Sbjct:   430 VMLFIFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTVRENCYWEDGCHFKNLGCRYL 489

Query:   112 NSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
             + L N +++K YY D + A  AVR G AWGA+Y ++NFTDA +AR  LGRD+D+ET+D S
Sbjct:   490 SHL-NTSVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDDETIDSS 548

Query:   172 EIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPS 231
             E++VWLDMSNQQIG+MLNRD+QL++RDFA  LL  C  NPK+ D+PIQF++PIYG+ +PS
Sbjct:   549 EVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPS 608

Query:   232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM 291
             FTDFVAPGVILTIVFFLAVALTSSALIIER EGLLDRSWVAGV+P EILFSHVITQFVVM
Sbjct:   609 FTDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEILFSHVITQFVVM 668

Query:   292 CGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
             CGQT LVLIFM+ VFGV   GDL  VI+LT+LQG+CGMCF F
Sbjct:   669 CGQTTLVLIFMLVVFGVTNNGDLFWVIVLTLLQGMCGMCFGF 710

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 145/285 (50%), Positives = 193/285 (67%)

Query:    53 VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWAT---KACPVLSNCSFTHLSCR 109
             VMLFI  LPV+Q++LFC AIG DPTGL LA+ N EM       + CPV + C+ T LSCR
Sbjct:   395 VMLFIVGLPVVQILLFCYAIGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGCNQTMLSCR 454

Query:   110 YLNSL-PNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETL 168
             YL+ L  N +++  Y  D E A   VR G AW AL    N+T +L+ R+  GR A++ T+
Sbjct:   455 YLDMLVKNKSMVVQYVTDDEMAYEEVRKGRAWAALVIQPNYTASLMERVEDGRYAEDGTI 514

Query:   169 DQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSN 228
             + S++ V +D SNQQI  +L RDLQ ++ +F  D+LS CD NPK+  +P+ F+ P+YG  
Sbjct:   515 ESSDLAVRMDWSNQQISQLLYRDLQYTFFNFVGDMLSDCDVNPKLGRVPVDFQHPVYGYR 574

Query:   229 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQF 288
             +P+FTDF APGVILTI+FFLAVA+TS A++I+R EG+L+R  VAG+T  EIL S V+TQF
Sbjct:   575 NPNFTDFAAPGVILTIIFFLAVAVTSGAMLIDRNEGMLERCLVAGITGPEILLSQVVTQF 634

Query:   289 VVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVF 333
              VM  QT  VLI   + F +   G++ LV+ L IL GLCGM F F
Sbjct:   635 TVMLSQTTFVLIVSFYFFELTLVGNIWLVVALCILNGLCGMSFGF 679

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 108/284 (38%), Positives = 163/284 (57%)

Query:    51 PRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMD---WATKACPVLSNCSFTHLS 107
             P  + F F LPV+Q+ L CL IG DP  + +A+VN E     ++      L N S   + 
Sbjct:   333 PGSLCFQFLLPVIQICLMCLCIGGDPKNIDVAVVNNESSPSAFSRSLLSFLDNTSINQIG 392

Query:   108 CRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEET 167
              R+       ++    + D   A + +R G+ WG + F +NFT  L  RM+  R    E 
Sbjct:   393 ERFPFCFLQVSLS---HSD---AFDGIRNGEYWGVIEFGENFTSYLTKRMLQPR-VSREV 445

Query:   168 LDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGS 227
             ++   +  WLD++N+QI LML + L  ++  F +  L +      +  +PI+F+EPIYGS
Sbjct:   446 VEGGSVHAWLDLTNRQIALMLQKKLHQAFEAFMEKRLGSMSY---MVAVPIKFEEPIYGS 502

Query:   228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQ 287
              +  FT FV PG +L+I F+LAV LT+ + ++ER EGLLDR WVAGV+ LE + +H+ +Q
Sbjct:   503 KNTDFTTFVTPGAVLSITFYLAVGLTALSFVLERKEGLLDRCWVAGVSSLETMLAHLFSQ 562

Query:   288 FVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
               V+  Q  L+LIF + VF +  +G L LVI L +LQG+ G+ F
Sbjct:   563 LFVISVQIILLLIFTLLVFNIPNEGSLALVISLIVLQGVTGISF 606

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)]

 Score = 489 (177.2 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 99/295 (33%), Positives = 171/295 (57%)

Query:    48 LF-SPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMD-----WATKACPVLSN- 100
             LF  P  ++F+   P++Q+  F LAIG+ PT L + + + E++     +      V  + 
Sbjct:   318 LFRQPSGIIFMLLFPIIQLTCFYLAIGKTPTNLEIGVYSGEVENYGECFDENLVTVYKDS 377

Query:   101 ----CSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVAR 156
                 C F  LSCRY+  L +D   + YY     A+N  +     G L+F  NF+D++++ 
Sbjct:   378 DNESCLFNKLSCRYIRVLGDDVATRKYYASEADALNDAKRATTVGYLHFAQNFSDSILSV 437

Query:   157 MVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADI 216
             M  G  + +  +D +E+ + +DM++QQ+   + R L+  +  F + ++  C+ +  I D+
Sbjct:   438 MEDGIHSSDGAVDHAELSIHIDMTDQQVAYFMQRKLRDKFSTFMRSVVKDCNVSTAIVDL 497

Query:   217 PIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTP 276
             P+QF+EPI+GS D  F  + APGV++T+VFFLA  +T++  I ERM+G+ DR+ +AGV+ 
Sbjct:   498 PVQFQEPIFGSTDIEFQQYCAPGVVMTMVFFLATLMTAAVFISERMDGIWDRTLLAGVSA 557

Query:   277 LEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
              E+L++H++TQ ++M  Q+  V++++  VF     GD   +I L  L   CGM F
Sbjct:   558 TEMLWAHLLTQLIIMALQSFEVIMYIGLVFDTYNNGDTTTLIGLLTLTAFCGMLF 612

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 259 (96.2 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 61/235 (25%), Positives = 119/235 (50%)

Query:    98 LSNCSFTHLSCRYLNSLPNDTIIKDYYP--DPESAINAVRVGDAWGALYFTDNFTDALVA 155
             + N     LS  ++N+L +   I ++    D  +AI  +   D WG +    NFT+ ++ 
Sbjct:   366 IKNIDSGSLSGDFINALSDGNNIFNFIQINDTSNAIQMIESSDLWGLIDIPVNFTNGMIN 425

Query:   156 RMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIAD 215
             ++    +  E++ + SE+ +++D+SN Q+ LM++   Q ++   A D         K+  
Sbjct:   426 KLF---NPLEKSFENSEMEIYMDLSNFQMNLMVDVQFQKAFNKIAND------SGIKL-- 474

Query:   216 IPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVT 275
             +P  F   +YG  + +F  F+AP +I  I +   +   S   + E+ +G  DR  + GV+
Sbjct:   475 LPTNF-HAVYGDQNANFNWFLAPAMICIITYVHCMNFLSITFVREKNDGTRDRILLYGVS 533

Query:   276 PLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMC 330
             P+  +  H++    ++  Q ++ L+  +F FGV  KG+++L+ +  IL    GMC
Sbjct:   534 PVSNVLGHILAHIPILLVQFSIQLLIAVFAFGVPIKGNIVLIYLFFILINTVGMC 588

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0267430 abcG20 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 63/222 (28%), Positives = 117/222 (52%)

Query:   110 YLNSLPNDTIIKDY-YPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETL 168
             Y+NSL N  I   + Y     AI  ++ G+++G L     F++A++   +   +  +   
Sbjct:   407 YINSLSNTGIFNFHNYNSTTEAIEQIKSGNSFGLLDINAQFSEAILENFM---NLSQYN- 462

Query:   169 DQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGS 227
                +I +++D +N QI L++ + L LS+   A+       Q   I   PI+   P +YG+
Sbjct:   463 PNGQIDLYMDFTNYQITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGN 515

Query:   228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQ 287
              +  F DF+APG++  I F  A+++TS + + E+++G LDR +  GV    I+F H +  
Sbjct:   516 PNSKFIDFLAPGMVCLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGH 575

Query:   288 FVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGM 329
               ++  Q  ++L+  I+ F V  +G++ LV ++T+     GM
Sbjct:   576 LPLLLVQITVLLLIAIYGFNVPIEGNIALVFLMTVSLAFVGM 617

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|DET_0814 DET_0814 "ABC transporter, permease protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 144 (55.7 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 27/95 (28%), Positives = 56/95 (58%)

Query:   229 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQF 288
             D +  D++AP ++ T+  F +  LT  + + E  +G ++R   A V+ L+I+  +++  F
Sbjct:    42 DATVLDYIAPAMLATLALFFSFLLTGISFLRETSQGTMERLMAAPVSRLDIVAGYLLGFF 101

Query:   289 VVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 323
             V    QT ++++F I+V GV  +G+L  +++  +L
Sbjct:   102 VFALLQTLIIVLFTIYVLGVNFQGELWQILLFQVL 136

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|DET_0795 DET_0795 "ABC transporter, permease protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 121 (47.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query:   210 NPKIADIPIQFK--EPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLD 267
             N +I   P+ F+  E    + D S   F  PGV+   + FL +  ++  LI +R + +L 
Sbjct:   121 NREITQTPVLFEISEETIQTKDMSMMSFFIPGVLAMSIMFLGI-YSAMPLIQQREKKILK 179

Query:   268 RSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 323
             R   + ++   I+FS V+ +  +   QT ++++    +FGVE  G+  L++ L +L
Sbjct:   180 RLGASPISRSTIIFSQVVLRLGLAVLQTVIIIVIGQLMFGVEILGNWWLLLGLVML 235

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|DET_0519 DET_0519 "ABC transporter, permease protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 116 (45.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 35/141 (24%), Positives = 73/141 (51%)

Query:   191 DLQLSYRDFAQDLLSTCDQNPKIADIPIQFK-EPIYGSNDPSFTDFVAPGVILTIVFFLA 249
             D+Q +    +Q L + C    KI +IP+    +P+   N  +  DF++PG+I   VF L 
Sbjct:   129 DIQAAGEILSQ-LNAVCRAFAKI-EIPLSINAQPVNIENKITNIDFISPGII---VFGLL 183

Query:   250 VALTSSALII--ERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI--FV 305
             + + +SA I+  ++ +G + R       P++ +  + ++   +   Q   ++ FM+  ++
Sbjct:   184 ILIPTSARIMVRDKEKGFMSRMLTTPSRPVDFILGYSLSMTFICIIQ---IIFFMLLGYL 240

Query:   306 FGVECKGDLLLVIILTILQGL 326
             FG++  G++ L  ++  L GL
Sbjct:   241 FGMDITGNIALAFLIFFLTGL 261

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|P0AFP9 ybhR [Escherichia coli K-12 (taxid:83333)]

 Score = 112 (44.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 38/161 (23%), Positives = 71/161 (44%)

Query:   166 ETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY 225
             +T   + +++ LD  N     +    LQ   +++ Q+LL   +  PK  +  +  +   Y
Sbjct:   110 DTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELL---EGKPKPNNSELVVRN-WY 165

Query:   226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
               N   +  FV P +I  I     + +TS ++  ER +G LD+  V+ +T  +I     +
Sbjct:   166 NPN-LDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAV 224

Query:   286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGL 326
                +V   Q  +VL   I+ + +   G L L     ++ GL
Sbjct:   225 PALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGL 265

GO:0006974 "response to DNA damage stimulus" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	354
COG0842	286	COG0842, COG0842, ABC-type multidrug transport sys	1e-06
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	2e-05
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	0.002

>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 37/106 (34%), Positives = 54/106 (50%)

Query: 226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
            +    +  F+ PGVIL  V F  +   SSAL  ER  G L+R  V+ V+ L IL   ++
Sbjct: 80  SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139

Query: 286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
              VV      LVL+ + F+ GV   G LLL+++L +L  L  +  
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVAL 185

Length = 286

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 212 KIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWV 271
            + + P+  +     + +  +  ++   ++L ++  +   + + +++ E+   + +R  V
Sbjct: 73  ALKNAPVNVEITPLFNPNSGYAYYLLG-LLLFLLILIGALIIALSIVEEKESRIKERLLV 131

Query: 272 AGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMC 330
           +GV+PL+ L   ++   +V   Q   +LI ++ +FG+    G+LLL+++L +L GL  + 
Sbjct: 132 SGVSPLKYLLGKILGDLLVGLIQ---LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIA 188

Query: 331 FVF 333
              
Sbjct: 189 LGA 191

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 7/152 (4%)

Query: 182 QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI 241
            Q+  +L R+    +RD +  LL      P +  +       ++G+ D S      PG++
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRL-IQPLLMALVFGT---VFGNLDTSLGGLNRPGLL 56

Query: 242 LTIVFFLAV-ALTSSALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVL 299
              + F A  +LT  + +  R  G+L+R   + + +P   + + ++ +  +   Q  + L
Sbjct: 57  FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116

Query: 300 IFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
           + + F+ G+       L +++ +L  L     
Sbjct: 117 LIVYFMVGLP-VSRFFLFLLVLLLTALAASGL 147

Length = 210

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.91
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	99.85
TIGR03061	164	pip_yhgE_Nterm YhgE/Pip N-terminal domain. This fa	99.81
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.3
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	99.25
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.23
COG1511	780	Predicted membrane protein [Function unknown]	99.16
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.15
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	99.15
COG0842	286	ABC-type multidrug transport system, permease comp	99.09
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.09
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	99.08
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.07
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.05
PRK15066	257	inner membrane transport permease; Provisional	99.01
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	98.33
COG1277	278	NosY ABC-type transport system involved in multi-c	98.24
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	98.2
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	97.79
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	97.74
COG2386	221	CcmB ABC-type transport system involved in cytochr	97.51
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.23
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	96.98
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.76
PLN03211	659	ABC transporter G-25; Provisional	96.69
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	96.52
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	96.21
PLN03140	1470	ABC transporter G family member; Provisional	95.79
PF13346	206	ABC2_membrane_5: ABC-2 family transporter protein	95.49
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	95.47
KOG0059|consensus	885		95.2
PLN03140	1470	ABC transporter G family member; Provisional	95.19
KOG0061|consensus	613		94.38
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	94.18
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	94.14
TIGR00439	309	ftsX putative protein insertion permease FtsX. Fts	93.85
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	93.79
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	92.87
PRK11026	309	ftsX cell division ABC transporter subunit FtsX; P	92.78
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	90.57
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	89.71
KOG0065|consensus	1391		87.65
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	86.77
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	85.58
KOG0065|consensus	1391		85.49
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	83.38
COG2386	221	CcmB ABC-type transport system involved in cytochr	83.29
PF09847	449	DUF2074: Predicted permease (DUF2074); InterPro: I	80.55

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.91  E-value=1.5e-25  Score=211.69  Aligned_cols=266  Identities=21%  Similarity=0.376  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcC---CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCC
Q psy17040         51 PRVMLFIFALPVMQVILFCLAIGR---DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPD  126 (354)
Q Consensus        51 k~~l~~~il~Pli~~~l~~~~~~~---~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s  126 (354)
                      |+.+++.+++|++++++++..+..   +.++.+++++|+|+++               .++++.+.+++++. ....+.|
T Consensus         1 K~~l~~~il~pi~~~~~~~~~~~~~~~~~~~~~v~vv~~~~~~---------------~~~~l~~~l~~~~~~~~~~~~~   65 (344)
T PF12698_consen    1 KSFLFFIILLPILLILLIGLIFSNSSSDPSPIPVAVVDEDNSS---------------LSKQLVQMLSNSPNFDVVEYDS   65 (344)
T ss_dssp             -------------------------------EEEEEEETT-SH---------------HHCCCHHHHCTSSCCEEEECS-
T ss_pred             CceeeeehHHHHHHHHHHHHHHHcCcCCCCCCeEEEEeCCCCh---------------HHHHHHHHHhcCCCcceeeeCC
Confidence            567789999999999998876643   3678999999999864               56677788877653 2357889


Q ss_pred             HHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17040        127 PESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLST  206 (354)
Q Consensus       127 ~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  206 (354)
                      ++|+++++++|++++++++|+||++++..   +++        .++++++.|+.+......+++.+++..+..+.+... 
T Consensus        66 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-  133 (344)
T PF12698_consen   66 EEEAKDALKNGKIDAIIVIPKNFSQDLLS---SGE--------SPNITVYINSSNPHSSQIIQNALSSLLQQLNASSEG-  133 (344)
T ss_dssp             HHHHHHHHHHHT-SEEEEE-TTCCCHCH----TT----------ECCEEEESSSSHHHHHHHHHHHHHHHHHHHHCCCG-
T ss_pred             HHHHHHHHHhCCCcEEEEcCccccccccc---cCC--------cceEEEEeecccchhhhhhhccccccchhhhhhhhh-
Confidence            99999999999999999999999987761   244        267888889887777666666666533322221100 


Q ss_pred             cCCCCCccCCCeEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHH
Q psy17040        207 CDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVIT  286 (354)
Q Consensus       207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~  286 (354)
                       .........+++.+.....++..++.+++.+.+ .+++++.+....+..+.+||++|+.+|+.++|++++++++||++.
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~  211 (344)
T PF12698_consen  134 -KSAIQSSNSPIPVESIPLSNPSSSFASYLIPFI-LFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLA  211 (344)
T ss_dssp             -CCCCHHHT--EEEEEEEECCCHHHCHTT---------------------------------------------------
T ss_pred             -hhhhccccccccccccccccccccccccccccc-hhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHH
Confidence             001111234555544333334445666666643 343344444445668899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040        287 QFVVMCGQTALVLIFMIFVFG---VECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK  349 (354)
Q Consensus       287 ~~~v~~i~~~i~l~~~~~~f~---v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~  349 (354)
                      .++++++++++++++   ++|   +++. +.+.+++..++++++..++|++++.++++.+.+..++
T Consensus       212 ~~~~~~i~~~i~~~i---~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~  273 (344)
T PF12698_consen  212 YFLVSLIQSLIIIII---IFGISGIPFG-NFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVA  273 (344)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HhhHHHHHHHHHHHH---HhccccCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999998876653   667   7776 6666778888999999999999999999998886543

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.8e-19  Score=174.14  Aligned_cols=283  Identities=16%  Similarity=0.088  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHhhhhhcChhHHHHH--HHHHHHHHHHHHHHhc----CCCCCceEEEEeCCCCcccccCCCCCCCcccch
Q psy17040         33 VLFLTISMLVITSSTLFSPRVMLFI--FALPVMQVILFCLAIG----RDPTGLHLAIVNQEMDWATKACPVLSNCSFTHL  106 (354)
Q Consensus        33 ~~~~~i~~~elk~~~~Rdk~~l~~~--il~Pli~~~l~~~~~~----~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~  106 (354)
                      +.+|+++|||+| +.+|||..++.+  ++.|++...+......    ...++.+++++|++ .+                
T Consensus         2 ~~~~~v~~ke~~-~~~r~r~~~~~~~~v~~pl~~~~~~~i~~~~~~~~~~~~~~ia~~~~~-~~----------------   63 (407)
T COG1668           2 SKLWTVAKKELK-DLLRDRKFLLSTFIVLLPLLLAGISIIISLFEKAGKEEKLKIAVVDEG-YA----------------   63 (407)
T ss_pred             chHHHHHHHHHH-HHHhcchhhHhHHHHHHHHHHhhHHHHHHhhccccccccceeeeCCCc-hh----------------
Confidence            567899999999 999999999886  6777766665443332    22445667777776 12                


Q ss_pred             hHHHHhhCCCCc---ccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCchHH
Q psy17040        107 SCRYLNSLPNDT---IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQ  183 (354)
Q Consensus       107 s~~li~~l~~~~---~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~~~~  183 (354)
                        .+...++..+   .......+.++++++.+++++|+.+++|+||.+.+......++.        ...+...+.   .
T Consensus        64 --~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~  130 (407)
T COG1668          64 --VLESGLKAVPGAVDTGIAGSSIEDAEEAVKLGKIDGLLVIPRNFADTVEADEYAGEL--------VLVKEDISR---L  130 (407)
T ss_pred             --HHHHHHhcCCCccceeecccchHHHHHHHHhccCCeEEEecCCccchhhhchhhhhh--------hhhcccccc---h
Confidence              2233333322   23345567889999999999999999999998877741000111        011111111   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCeEEecccc------cCCCCChh----HHHHHHHHHHHHHHHHHHHH
Q psy17040        184 IGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY------GSNDPSFT----DFVAPGVILTIVFFLAVALT  253 (354)
Q Consensus       184 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~----~~~~p~ll~~~l~~~~~~~~  253 (354)
                      .........+...++++.+.    +...+....|.+++.+..      ..+.....    .+.++.++.++.+..+..+.
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~----~~~~q~l~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~  206 (407)
T COG1668         131 QADLTYARISKLLAELGLSV----GERLQALGIPPKVDNPVVSEGGESLPPEEISAALLLVAILIFLLFFIPLSYAGQMV  206 (407)
T ss_pred             hhHHHHHHHHHHHHHhcccc----ccchhhhcCCcccccceeccCcccCChHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111112222222222111    011111122222221111      11112223    33344444444444444455


Q ss_pred             HHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhcC--ccchh-HHHHHH-H
Q psy17040        254 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---------FVFGV--ECKGD-LLLVII-L  320 (354)
Q Consensus       254 ~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~---------~~f~v--~~~g~-~~~~ll-~  320 (354)
                      +.++.+|||+|++|-|+++|+++.++++||+++...++++|.+++++.+.         ...+.  ..... +....+ .
T Consensus       207 ~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  286 (407)
T COG1668         207 ADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSL  286 (407)
T ss_pred             HHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999888776651         11111  11111 111112 2


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040        321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQ  350 (354)
Q Consensus       321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~  350 (354)
                      .+...+...+++.+++..+++.++|.+...
T Consensus       287 ~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~  316 (407)
T COG1668         287 FLLGLLLYAALAAFLGAMAGSIKEAQTLIS  316 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence            222334445578899999999999988543

>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain

Probab=99.81  E-value=1.3e-18  Score=149.30  Aligned_cols=149  Identities=9%  Similarity=0.112  Sum_probs=110.2

Q ss_pred             HHHhhhhhcChh---HHHHHHHHHHHHHHHHHHHhc---CCCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhC
Q psy17040         41 LVITSSTLFSPR---VMLFIFALPVMQVILFCLAIG---RDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSL  114 (354)
Q Consensus        41 ~elk~~~~Rdk~---~l~~~il~Pli~~~l~~~~~~---~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l  114 (354)
                      ||+| +++|||+   .+++++++|+++.++++++++   .+.+++||||||+|+++..       +...-.+|+++++.+
T Consensus         1 ~E~~-~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpvaVVd~D~s~~~-------~~~~~~~s~~l~~~l   72 (164)
T TIGR03061         1 SELK-RLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATY-------DGKTLNAGDDLVKEL   72 (164)
T ss_pred             ChHH-HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEEEEECCCCCCc-------CCcccchHHHHHHHH
Confidence            6899 9999996   455679999999999999885   4578999999999998620       111123489999999


Q ss_pred             CCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCc-hHHHHHHHHHHHH
Q psy17040        115 PNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMS-NQQIGLMLNRDLQ  193 (354)
Q Consensus       115 ~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~l~  193 (354)
                      ++++.......+++||++++++|+++++|+||+||++++.+.. .|+.      .++++.++.|.. +...+..+++.++
T Consensus        73 ~~~~~~~~~~~~~~ea~~~l~~g~~~~~ivIP~~Fs~~l~~~~-~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~  145 (164)
T TIGR03061        73 KKNDDLDWHFVSAKEAEKGLADGKYYMVITIPEDFSENATSLL-DDQP------KKAQLTYKTNDANNYIASQIAETAAE  145 (164)
T ss_pred             hcCCCcceEEcCHHHHHHHhHcCcEEEEEEECcchhHHHHhhc-cCCC------CccEEEEEECCCcchHHHHHHHHHHH
Confidence            8876333334499999999999999999999999999998421 1222      146778777776 4445556666666


Q ss_pred             HHHHHHHHHHH
Q psy17040        194 LSYRDFAQDLL  204 (354)
Q Consensus       194 ~~~~~~~~~~~  204 (354)
                      .+....++++.
T Consensus       146 ~~~~~~~~~~~  156 (164)
T TIGR03061       146 KVKTSVSKSIT  156 (164)
T ss_pred             HHHHHHHHHHH
Confidence            66666665543

This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.30  E-value=7.5e-11  Score=108.22  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17040        230 PSFTDFVAPGVILTIVFFLAVALTSS-ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  308 (354)
Q Consensus       230 ~~~~~~~~p~ll~~~l~~~~~~~~~~-~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v  308 (354)
                      .+|.+|++||++.+.+++.++..+.. .+.+||++|+++|++++|+++.++++||++...+.++++..++.++ ...+|.
T Consensus        54 ~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~-~~~~g~  132 (253)
T TIGR01291        54 VSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVV-TATLGY  132 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence            46999999999999888776554443 6689999999999999999999999999999998888888765544 346666


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040        309 ECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK  348 (354)
Q Consensus       309 ~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~  348 (354)
                      ....+++.++.+.+++.+++.++|++++.++++.+++..+
T Consensus       133 ~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i  172 (253)
T TIGR01291       133 IEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFY  172 (253)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            5555666666666778888999999999999999888754

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=99.25  E-value=6.7e-09  Score=100.95  Aligned_cols=219  Identities=18%  Similarity=0.214  Sum_probs=110.2

Q ss_pred             CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC--c-cccc-----ccC-CHHHHHHHhHcCCeEEEEEe
Q psy17040         75 DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND--T-IIKD-----YYP-DPESAINAVRVGDAWGALYF  145 (354)
Q Consensus        75 ~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~--~-~~~~-----~~~-s~~ea~~~l~~g~v~~~v~I  145 (354)
                      ..+++|+++||+|++..      ..+...++...+.++..++.  + ...+     .+. +++|+++++.+||+.++|+|
T Consensus        26 ~~~nL~v~VV~~D~g~~------~~~~~iG~~v~~~~~~~~~~~~~~~~w~~~~~s~f~~~~~~~~~~V~~~kywaAI~I   99 (382)
T PF12051_consen   26 NLHNLPVAVVNQDGGGN------GTIPNIGNAVVQALQSNPSKGRSFGDWHFVNASEFPESPEEAREGVYDGKYWAAIVI   99 (382)
T ss_pred             ccCCceEEEEEcCCCCC------ccCcchHHHHHHHHHhcchhcccCCCeEEechHhccCCHHHHHHHHhcccEEEEEEe
Confidence            35799999999999810      00111222333444444432  1 1111     223 89999999999999999999


Q ss_pred             CcChHHHHHHHH-hhCCCCCccccccceEEEEEcC-ch-HHHHHHHHHHHHHHHHHHHH----HHH----hhcC-CC---
Q psy17040        146 TDNFTDALVARM-VLGRDADEETLDQSEIRVWLDM-SN-QQIGLMLNRDLQLSYRDFAQ----DLL----STCD-QN---  210 (354)
Q Consensus       146 P~~Fs~~l~~~~-~~g~~~~~~~~~~~~i~i~~~~-~~-~~~~~~~~~~l~~~~~~~~~----~~~----~~~~-~~---  210 (354)
                      |+||++++.+.. ++|..   +......+++++++ .+ ....+.+...+++..+.+..    +..    ++.. .+   
T Consensus       100 ~~naT~~l~~al~~~~~~---~~n~s~~i~~~y~~~R~~~~~~s~i~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (382)
T PF12051_consen  100 PPNATANLYSALSQNGNS---SYNPSDAITVYYESGRDPTAVSSYILPSIQTLETAVNSQFGQQYLPSLLQNLSNSAAAA  176 (382)
T ss_pred             CCChhHHHHHHhccCCCC---ccCCCccEEEEEecCcchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhh
Confidence            999999999765 23321   12222456666654 33 22233333333333332222    211    1111 00   


Q ss_pred             -----CCccCCCeEEecccccC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHH
Q psy17040        211 -----PKIADIPIQFKEPIYGS-NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHV  284 (354)
Q Consensus       211 -----~~~~~~~v~~~~~~~~~-~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gki  284 (354)
                           ++...+|++.+...+.. +++.......-+++..+++-+........+..|-  |     ...++++..+++-|+
T Consensus       177 ~~~~a~~~la~p~~~~~~d~rP~~~~~~~~~~~vg~iy~li~~ff~~~~~~~i~~~~--~-----~~~~l~~~~~~~~R~  249 (382)
T PF12051_consen  177 LLANAPQALAQPITFTYIDLRPFTDPVALAPSQVGLIYLLILTFFQFMFLGPIHMEM--G-----LRRKLKPRHYLIYRW  249 (382)
T ss_pred             hhccchhhhcCCCceEEEecccCCchhhcchhhHHHHHHHHHHHHHHHHhhhHHHhh--h-----cccccCHHHHHHHHH
Confidence                 11112354443322211 1111111111121111111110111111222222  1     244668889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17040        285 ITQFVVMCGQTALVLIFMIFVFGVEC  310 (354)
Q Consensus       285 l~~~~v~~i~~~i~l~~~~~~f~v~~  310 (354)
                      +...+..++.++.+.++. ..|++|+
T Consensus       250 ~~~~~~~~~~Sl~~~~v~-~af~~~~  274 (382)
T PF12051_consen  250 IISWIAYFFLSLFYSLVS-LAFQVDF  274 (382)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHCCCc
Confidence            998888888777766554 6899888

It is found in bacterial and eukaryotic proteins.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.23  E-value=2.4e-10  Score=103.47  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy17040        232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK  311 (354)
Q Consensus       232 ~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~  311 (354)
                      +.+|+.|+.+.+..++.+....+..+.+||++|+++|++++|+++.++++||++...+..+++..+.++ ...++|+++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  112 (232)
T TIGR00025        34 RGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLV-IGFVLGFRFA  112 (232)
T ss_pred             chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcC
Confidence            446778888888887787888888999999999999999999999999999988888887777655544 4567899887


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q psy17040        312 GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYN  345 (354)
Q Consensus       312 g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a  345 (354)
                      ++....++...+..+++.++|.+++.++++.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (232)
T TIGR00025       113 GGALTALTLGAVIIALGTALFAALGLVAGGTLQA  146 (232)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            6666555556666777788888888888765554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>COG1511 Predicted membrane protein [Function unknown]

Probab=99.16  E-value=4.3e-10  Score=118.26  Aligned_cols=111  Identities=17%  Similarity=0.257  Sum_probs=82.4

Q ss_pred             HHHHHHHhhhhhcChhHHHHHHH---HHHHHHHHHHHHhcC---CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHH
Q psy17040         37 TISMLVITSSTLFSPRVMLFIFA---LPVMQVILFCLAIGR---DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRY  110 (354)
Q Consensus        37 ~i~~~elk~~~~Rdk~~l~~~il---~Pli~~~l~~~~~~~---~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~l  110 (354)
                      .++++++| +++|+|..++.++.   +|.++..++-..+..   ...++||||||||.+..       .+.-.-.++.++
T Consensus         2 ~~~~~~~k-~i~k~~~~li~~i~i~vip~ly~~~~i~s~~dpy~~~~~lpVAVVNeDkg~t-------~~Gk~~~iG~~~   73 (780)
T COG1511           2 KMFKRDWK-SILKNKLLLIPIIAILVLPSLYAFFFLGALWDPYGNTSKLPVAVVNEDKGAT-------FNGKKVNIGDDL   73 (780)
T ss_pred             cccHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCceEEEECCCCcc-------cCCCeeehHHHH
Confidence            46789999 99999988776554   333333332222211   24679999999997642       122225578899


Q ss_pred             HhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHH
Q psy17040        111 LNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVA  155 (354)
Q Consensus       111 i~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~  155 (354)
                      ++.+++++..-+++.|+++|++.+++|+++++++||+||++++.+
T Consensus        74 V~~L~kn~~~~w~fVs~~~A~~gl~~g~Yya~i~IP~dFS~~a~S  118 (780)
T COG1511          74 VKTLKKNKSLDWHFVSREEAEKGLKDGKYYAVIYIPKDFSKNALS  118 (780)
T ss_pred             HHHhhcCCCCCeEEeCHHHHHhhhhhCceEEEEEecchhhhhhhh
Confidence            999988875457778999999999999999999999999999986

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.15  E-value=5.9e-10  Score=94.30  Aligned_cols=94  Identities=18%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH---HHH
Q psy17040        250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL---QGL  326 (354)
Q Consensus       250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~---~~l  326 (354)
                      .+..+..+.+|||+|+++|++++|++++++++||+++..+.+++|..++++++ +++|+++.++++..++...+   +.+
T Consensus         5 ~~~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~-~~~g~~~~~~~~~~~~~~~~~~l~~~   83 (152)
T TIGR01248         5 SLFNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA-LALGFRFRNGVAAALLFLLIPSIFGI   83 (152)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            45666788999999999999999999999999999999999999999888877 46799887665544444433   344


Q ss_pred             HHHHHHHHHHHhccchhh
Q psy17040        327 CGMCFVFGRKNIFEWKLY  344 (354)
Q Consensus       327 ~~~~lGllis~l~k~~~~  344 (354)
                      ...++|..++...|+++.
T Consensus        84 ~f~~l~~~~a~~~~~~~~  101 (152)
T TIGR01248        84 AFAALVMAMALRKEGRFA  101 (152)
T ss_pred             HHHHHHHHHHHHcCCHHH
Confidence            444555555555565544

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=99.15  E-value=1.2e-09  Score=99.45  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCccc----hhHHHHHHHH
Q psy17040        248 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTAL--VLIFMIFVFGVECK----GDLLLVIILT  321 (354)
Q Consensus       248 ~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i--~l~~~~~~f~v~~~----g~~~~~ll~~  321 (354)
                      .....+..++.+|||+||+|.++++|++++++++||.++...+..+....  ........++.+..    ++....++..
T Consensus        64 ~~p~l~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (240)
T TIGR03518        64 LIPAITMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGL  143 (240)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHH
Confidence            33455667899999999999999999999999999999998877665442  22233445665532    3334445555


Q ss_pred             HHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040        322 ILQGLCGMCFVFGRKNIFEWKLYNGNKKQ  350 (354)
Q Consensus       322 ~~~~l~~~~lGllis~l~k~~~~a~~~~~  350 (354)
                      .+++.+..++|+++|+++||+..|..++.
T Consensus       144 ~l~~~~~~aig~~iSsl~~~q~~a~~~~~  172 (240)
T TIGR03518       144 LLLGSVYTAIGLFASSLTENQIVAFIIAV  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            56677888999999999999999865543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.09  E-value=3.7e-08  Score=90.54  Aligned_cols=122  Identities=30%  Similarity=0.382  Sum_probs=102.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG  307 (354)
Q Consensus       228 ~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~  307 (354)
                      +..++..|..|+++.+.+++.+.......+.+||+.|+++|++.+|+++...++++.++..++..++..++++...+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g  161 (286)
T COG0842          82 PSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG  161 (286)
T ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45678899999999998888777777777777899999999999999988888999999999998888888888899999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHH-Hhccchhhhhhhh
Q psy17040        308 VECKGDLLLVIILTILQGLCGMCFVFGRK-NIFEWKLYNGNKK  349 (354)
Q Consensus       308 v~~~g~~~~~ll~~~~~~l~~~~lGllis-~l~k~~~~a~~~~  349 (354)
                      +.+.++.+..+....++.+...++|++++ ...++.+.+..++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  204 (286)
T COG0842         162 VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVG  204 (286)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888888888888889999999999766 3555566655444

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.09  E-value=3.6e-09  Score=95.93  Aligned_cols=118  Identities=16%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040        230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE  309 (354)
Q Consensus       230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~  309 (354)
                      .+|..|+.||++.+.++..+.. .+..+..||++|+++|+.++|+++.++++||.+...+..+++.++..++....++.+
T Consensus        44 ~~y~~fl~~G~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~  122 (236)
T TIGR01247        44 VDYMTYLVPGIVAMTVFNMSFF-SGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILK  122 (236)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999877765443 455778899999999999999999999999999999999999888887777777777


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040        310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK  349 (354)
Q Consensus       310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~  349 (354)
                      +.+.+..+ +...+++++..++|.+++.+.++.+.+..+.
T Consensus       123 ~~~~~~~~-~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~  161 (236)
T TIGR01247       123 PSGVIPTL-VLAFIVGVALSGLGVAIAARMDSMEGFQIIM  161 (236)
T ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            65544444 3455677788999999999999988776644

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=99.08  E-value=2.9e-09  Score=98.41  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCccchh-HHHHHHH
Q psy17040        249 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM-------IFVFGVECKGD-LLLVIIL  320 (354)
Q Consensus       249 ~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~-------~~~f~v~~~g~-~~~~ll~  320 (354)
                      +...++..+.+|||+||++-+++.|++|.+++.||.++..+.+++ ..+.++++       ....+.+.... .....+.
T Consensus        82 ~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T PF12679_consen   82 AIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLL  160 (277)
T ss_pred             HHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            456777799999999999999999999999999999999998543 22222221       12234444322 2222222


Q ss_pred             HHHHHH---HHHHHHHHHHHhccchhhhhhhhhh
Q psy17040        321 TILQGL---CGMCFVFGRKNIFEWKLYNGNKKQD  351 (354)
Q Consensus       321 ~~~~~l---~~~~lGllis~l~k~~~~a~~~~~~  351 (354)
                      .....+   +..++|+++|++++|...|...+..
T Consensus       161 ~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~  194 (277)
T PF12679_consen  161 FVLLLLAVLVFISLGLLISSLFRSSASAILASLG  194 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            222222   4589999999999999998876654

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.07  E-value=4.5e-09  Score=96.40  Aligned_cols=116  Identities=14%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17040        231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC  310 (354)
Q Consensus       231 ~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~  310 (354)
                      +|..|+.||++.+.++..+ +..+..+..||++|+++|++.+|+++..+.+||.++..+..+++..++++++ .++|.+.
T Consensus        57 ~y~~fl~pGi~~~~~~~~~-~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~-~~~g~~~  134 (253)
T TIGR03861        57 TYEVYIVPGLCCMILLFNG-MQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA-ALVGVQP  134 (253)
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence            6899999999999887654 4456678899999999999999999999999999999999999887665554 4567654


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040        311 K-GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK  348 (354)
Q Consensus       311 ~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~  348 (354)
                      . .+++..+...++..+++.++|+++|.++++.+++..+
T Consensus       135 ~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i  173 (253)
T TIGR03861       135 PVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGV  173 (253)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3 3344444455667788889999999999998877654

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.05  E-value=3.6e-09  Score=94.00  Aligned_cols=126  Identities=15%  Similarity=0.113  Sum_probs=99.4

Q ss_pred             CCCeEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy17040        215 DIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQ  294 (354)
Q Consensus       215 ~~~v~~~~~~~~~~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~  294 (354)
                      .+|++++++. .|+..++.+++.|+++.+.+++.+....  .+..+|++    |...+|++++++++||++...+++++|
T Consensus         5 ~~pv~~~~~~-~~~~~~~~~~~~p~~~~~~l~~ga~~~~--~~~~~~~~----~~~~~p~~~~~~~~~k~~~~~~~~~~~   77 (208)
T TIGR03062         5 AEPVKLKHSD-YDDVPNYGTGLAPYFLSLALFVGALVLN--MIIPPLSR----RALPKSARSWRIALAKLLPGGLIGVLQ   77 (208)
T ss_pred             CCCceeceee-ccCCCCCcchhHHHHHHHHHHHHHHHHH--HHhccccc----cccccCchHHHHHHHHHHHHHHHHHHH
Confidence            4588776543 3456678899999999988876654443  23455554    346899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040        295 TALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK  348 (354)
Q Consensus       295 ~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~  348 (354)
                      ..+++++..+.+|+++. +.+.+++...++++++.++|++++.++++..++...
T Consensus        78 ~~~~~~i~~~~~g~~~~-~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~  130 (208)
T TIGR03062        78 AIILYGVLILGLGLDPA-HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLAL  130 (208)
T ss_pred             HHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence            99988888888999885 667777788888999999999999999977655443

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.01  E-value=1.2e-08  Score=93.77  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=93.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040        230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE  309 (354)
Q Consensus       230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~  309 (354)
                      .+|..|+.||++.+..+..+...++.++.+||+.|+++|++++|+++..++.||+++..+.++++..++++++..++|.+
T Consensus        57 ~~y~~fl~pGll~~~~~~~~~~~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~  136 (257)
T PRK15066         57 FSYMQFIVPGLIMMSVITNSYSNVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQ  136 (257)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999988887777777889999999999999999999999999999999999998887777777777877


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040        310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK  349 (354)
Q Consensus       310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~  349 (354)
                      +.+ .+..+...++..++....|++++.+.++.+++..+.
T Consensus       137 ~~~-~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~  175 (257)
T PRK15066        137 VHH-WGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIP  175 (257)
T ss_pred             HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            643 233333333333434445889998888877777654

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=98.33  E-value=1.6e-05  Score=71.14  Aligned_cols=108  Identities=13%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy17040        232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK  311 (354)
Q Consensus       232 ~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~  311 (354)
                      ......|+++=+...+.+......+..+|+|+|+++.++.+|+++..+++||.++..+...+-..+..-+....+|.+..
T Consensus        43 ~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~  122 (215)
T PF03379_consen   43 LLARVAPGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPIS  122 (215)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            34456788877777776666667789999999999999999999999999999999988887777666666678898874


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17040        312 GDLLLVIILTILQGLCGMCFVFGRKNIFE  340 (354)
Q Consensus       312 g~~~~~ll~~~~~~l~~~~lGllis~l~k  340 (354)
                       ++..+++...+++....++|-+.+.++-
T Consensus       123 -~~~~~~~~l~lgt~gl~~igtl~aal~~  150 (215)
T PF03379_consen  123 -SWPLLLLSLLLGTLGLAAIGTLLAALAA  150 (215)
T ss_pred             -HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             5555566666777777788888777654

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=98.24  E-value=1.2e-05  Score=74.57  Aligned_cols=105  Identities=15%  Similarity=0.186  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHhcCccchh----HHHHHHH
Q psy17040        248 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL--IF-MIFVFGVECKGD----LLLVIIL  320 (354)
Q Consensus       248 ~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l--~~-~~~~f~v~~~g~----~~~~ll~  320 (354)
                      .+...++..+.+|+++||.+.+++.|++|.+++.||.++......+...+..  +. ....++.+...+    .......
T Consensus        74 ~~~~l~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (278)
T COG1277          74 LAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGS  153 (278)
T ss_pred             HHHHHccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence            3455667789999999999999999999999999999999988887777665  22 233455544222    2345566


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040        321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQDS  352 (354)
Q Consensus       321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~  352 (354)
                      ..++.....+++.+++.+.++...+..++...
T Consensus       154 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  185 (278)
T COG1277         154 SLLYGLVLLSISLLISSLFSSSSLALLVSIIL  185 (278)
T ss_pred             HHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence            66788888899999999999999888877654

>TIGR01190 ccmB heme exporter protein CcmB

Probab=98.20  E-value=4.5e-05  Score=67.57  Aligned_cols=111  Identities=9%  Similarity=0.044  Sum_probs=87.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040        230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE  309 (354)
Q Consensus       230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~  309 (354)
                      ++...-..|+++=....+.+.......+.+|+|+|+++.++.+|.++..+++||+++.++...+...+..-.....+|.+
T Consensus        38 ~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~  117 (211)
T TIGR01190        38 LKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLD  117 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            34445578888777666666666667889999999999999999999999999999999888777666665556688998


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040        310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEW  341 (354)
Q Consensus       310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~  341 (354)
                      ..+. +.+.+.+++.+.....+|-+.+.++-+
T Consensus       118 ~~~~-~~l~l~LllGt~~Ls~igtl~aALt~g  148 (211)
T TIGR01190       118 VPAW-GALALTLLLGTPALSFLGAIGAALTVG  148 (211)
T ss_pred             chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8544 556666677778888888888877654

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.79  E-value=9.5e-07  Score=77.62  Aligned_cols=94  Identities=20%  Similarity=0.394  Sum_probs=81.9

Q ss_pred             HHHHHHHhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy17040        256 ALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFG  334 (354)
Q Consensus       256 ~i~~Ek~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~lGll  334 (354)
                      ....|+++++++|...+|. ++..++++|.+...+..+++..++.++....+|.++. +....++..++..++..++|.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~  150 (210)
T PF01061_consen   72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFLLILLLSILCSSGLGLL  150 (210)
T ss_pred             hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchheecccccccccccccccc
Confidence            4678899999999999999 9999999999999999999999888877777788876 5667777777788889999999


Q ss_pred             HHHhccchhhhhhhhh
Q psy17040        335 RKNIFEWKLYNGNKKQ  350 (354)
Q Consensus       335 is~l~k~~~~a~~~~~  350 (354)
                      ++.++++.+.+..+..
T Consensus       151 ~~~~~~~~~~~~~~~~  166 (210)
T PF01061_consen  151 LAALFPSFRDASAISS  166 (210)
T ss_pred             cccchhhhhhhhhhhh
Confidence            9999999888877654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=97.74  E-value=0.0013  Score=57.62  Aligned_cols=100  Identities=12%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc-Cccchh-----HHHHHHH
Q psy17040        250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFG-VECKGD-----LLLVIIL  320 (354)
Q Consensus       250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~---~~f~-v~~~g~-----~~~~ll~  320 (354)
                      ....+..+.+|+++|+.+.+.+.|.+|.+++.+|++...+..++..++..+...   ..++ .++..+     ....++.
T Consensus        63 ~~~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (232)
T PF12730_consen   63 IILAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLL  142 (232)
T ss_pred             HHHHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHH
Confidence            445666788999999999999999999999999999999988877666433322   2333 222211     2223334


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040        321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQ  350 (354)
Q Consensus       321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~  350 (354)
                      .+...+....+ .+++.+.||.-.+..++.
T Consensus       143 ~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~  171 (232)
T PF12730_consen  143 FLLLSLFISLL-LFISSLFRNSIVAIIISI  171 (232)
T ss_pred             HHHHHHHHHHH-HHHHHHHhhHHHHHHHHH
Confidence            44444445555 788899998666654443

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0025  Score=55.56  Aligned_cols=113  Identities=11%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG  307 (354)
Q Consensus       228 ~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~  307 (354)
                      |+++...-..|+++-....+.++..-......|+|.|++|.++.+|.....++.||+++......+--++..=+....+|
T Consensus        42 pd~~~la~iaPgilWia~lLA~lL~l~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~  121 (221)
T COG2386          42 PDPQLLARIAPGILWIAALLASLLGLERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLN  121 (221)
T ss_pred             CchhHHHHhcchHHHHHHHHHHHHhHHHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            45555556788877666555555555568889999999999999999999999999999999887766665555566788


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040        308 VECKGDLLLVIILTILQGLCGMCFVFGRKNIFEW  341 (354)
Q Consensus       308 v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~  341 (354)
                      ++. ++++.+.+..+++......+|-..+.++-.
T Consensus       122 ~~~-~~~~~~~ltLllGtp~ls~~ga~gaALtv~  154 (221)
T COG2386         122 MDV-GALGALALTLLLGTPALSFLGAVGAALTVG  154 (221)
T ss_pred             CCH-hHHHHHHHHHHhcchHHHHHHHHHHHHHhc
Confidence            887 566777777777766666666666665543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.23  E-value=0.0043  Score=71.61  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Q psy17040        233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG  312 (354)
Q Consensus       233 ~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g  312 (354)
                      ..+.+|.++++.+++. .......++.|||++.-|-+....++.+-+.++-++.++++.++.++++.++... ..+-...
T Consensus       651 ~~~~~pl~~~la~~~~-~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~~~~s  728 (2272)
T TIGR01257       651 LNRCFPIFMVLAWIYS-VSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRILHYS  728 (2272)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CceeecC
Confidence            3456777766665544 4445568899999999999999999999999999999888877766554333221 1222234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Q psy17040        313 DLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQD  351 (354)
Q Consensus       313 ~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~  351 (354)
                      ++..+++..++|++..+++++++|.|+.+.+.|..++.+
T Consensus       729 ~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~l  767 (2272)
T TIGR01257       729 DPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGV  767 (2272)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            567788888999999999999999999999887765543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=96.98  E-value=0.041  Score=50.21  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-Cccc-hhHHHHHHHHHH
Q psy17040        250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI----FVFG-VECK-GDLLLVIILTIL  323 (354)
Q Consensus       250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~----~~f~-v~~~-g~~~~~ll~~~~  323 (354)
                      ....+..+..|++++.++.+++.|+++.++..+|++......++...+.++...    ++++ .+.. .......+...+
T Consensus        61 ~i~~~~~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~  140 (248)
T TIGR03733        61 GIVCGMVVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLII  140 (248)
T ss_pred             HHHHHHHHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            344466778999999999999999999999999999988888876654322222    1222 1221 233334444555


Q ss_pred             HHHHHHHHHHHHHHhccc
Q psy17040        324 QGLCGMCFVFGRKNIFEW  341 (354)
Q Consensus       324 ~~l~~~~lGllis~l~k~  341 (354)
                      .++....+++.++...++
T Consensus       141 ~sl~~~~l~l~ls~~~g~  158 (248)
T TIGR03733       141 GSLFLYIIHLFVSFAFGM  158 (248)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            667777788888877775

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.76  E-value=0.39  Score=56.27  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=73.1

Q ss_pred             HHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cc--hhHHHHHHHHHHHHHHHHHHH
Q psy17040        256 ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE-CK--GDLLLVIILTILQGLCGMCFV  332 (354)
Q Consensus       256 ~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~-~~--g~~~~~ll~~~~~~l~~~~lG  332 (354)
                      -+++||+.+.-.-..++.+++..|.++.++.-+++.++.+++++++ ..+|+.+ +.  .++..+++++++|+++++-+.
T Consensus      1700 ~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i-~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~t 1778 (2272)
T TIGR01257      1700 YLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGI-FIGFQKKAYTSPENLPALVALLMLYGWAVIPMM 1778 (2272)
T ss_pred             eeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence            4579999988777889999999999999999888888876665543 4566643 32  356677778889999999999


Q ss_pred             HHHHHhccchhhhhh
Q psy17040        333 FGRKNIFEWKLYNGN  347 (354)
Q Consensus       333 llis~l~k~~~~a~~  347 (354)
                      -++|.++++...|..
T Consensus      1779 Yl~SflF~~~~~A~~ 1793 (2272)
T TIGR01257      1779 YPASFLFDVPSTAYV 1793 (2272)
T ss_pred             HHHHHhhCCchhHHH
Confidence            999999999888854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PLN03211 ABC transporter G-25; Provisional

Probab=96.69  E-value=0.02  Score=59.74  Aligned_cols=90  Identities=9%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             HhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        262 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF  339 (354)
Q Consensus       262 ~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~  339 (354)
                      |+.++.|=..+.. +...++++|.+.-+.+.++..+++..+.++.-|.+.. +..+..+++++++.+++.++|+++++++
T Consensus       464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~  543 (659)
T PLN03211        464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAI  543 (659)
T ss_pred             hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3345555555555 8899999999999999999988888888888888764 4466677788889999999999999999


Q ss_pred             cchhhhhhhhhh
Q psy17040        340 EWKLYNGNKKQD  351 (354)
Q Consensus       340 k~~~~a~~~~~~  351 (354)
                      +|.+.|+.++-+
T Consensus       544 ~~~~~a~~~~~~  555 (659)
T PLN03211        544 MDAKKASTIVTV  555 (659)
T ss_pred             CCHHHHHHHHHH
Confidence            999999876644

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=96.52  E-value=0.038  Score=57.32  Aligned_cols=89  Identities=12%  Similarity=0.108  Sum_probs=71.3

Q ss_pred             HhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        262 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF  339 (354)
Q Consensus       262 ~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~  339 (354)
                      |+.++.|-..+.. +...++++|++.-+.+.+++.+++.++.++..|.+.. +..+..++++++..+++.++|.+++.++
T Consensus       418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~  497 (617)
T TIGR00955       418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF  497 (617)
T ss_pred             HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456666666666 8889999999999999999988888777777787764 3355556667777888999999999999


Q ss_pred             cchhhhhhhhh
Q psy17040        340 EWKLYNGNKKQ  350 (354)
Q Consensus       340 k~~~~a~~~~~  350 (354)
                      ++...|..++.
T Consensus       498 ~~~~~a~~~~~  508 (617)
T TIGR00955       498 SSTSMALTVGP  508 (617)
T ss_pred             CchHHHHHHHH
Confidence            99999988764

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.11  Score=46.09  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCccc---hhHHHHHHHHHHHHH
Q psy17040        253 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM---IFVFGVECK---GDLLLVIILTILQGL  326 (354)
Q Consensus       253 ~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~---~~~f~v~~~---g~~~~~ll~~~~~~l  326 (354)
                      .+....-|++.+-++.++..|++|++++++|+...+++..+...+.....   -..+|.+-.   ...+.+....++.++
T Consensus        71 i~l~l~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~al  150 (239)
T COG4200          71 IALVLSVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLAL  150 (239)
T ss_pred             HHHHHHHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence            33455779999999999999999999999999999988877655543322   123343321   223344555666677


Q ss_pred             HHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040        327 CGMCFVFGRKNIFEWKLYNGNKKQDS  352 (354)
Q Consensus       327 ~~~~lGllis~l~k~~~~a~~~~~~~  352 (354)
                      -..++-...++.+||..-|..+|.++
T Consensus       151 pl~~lQ~wLsm~fknf~~al~igI~l  176 (239)
T COG4200         151 PLVALQFWLSMRFKNFAVALVIGIFL  176 (239)
T ss_pred             HHHHHHHHHHHHHHhhhHhHHHHHhH
Confidence            77788888999999999999888765

>PLN03140 ABC transporter G family member; Provisional

Probab=95.79  E-value=0.15  Score=57.83  Aligned_cols=89  Identities=10%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             ChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040        264 GLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIFEW  341 (354)
Q Consensus       264 gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~  341 (354)
                      .++.|=..+.. +...+.+++++.-+...+++.+++.++.++..|.++. +..+..++++++..+++.++|++++++++|
T Consensus      1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140       1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred             HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            44555555544 8899999999999999999999998888888888764 345566666667788999999999999999


Q ss_pred             hhhhhhhhhhc
Q psy17040        342 KLYNGNKKQDS  352 (354)
Q Consensus       342 ~~~a~~~~~~~  352 (354)
                      ...|..++-+.
T Consensus      1355 ~~~A~~~~~~~ 1365 (1470)
T PLN03140       1355 QQVAAIFAAAF 1365 (1470)
T ss_pred             HHHHHHHHHHH
Confidence            99999876554

>PF13346 ABC2_membrane_5: ABC-2 family transporter protein

Probab=95.49  E-value=0.54  Score=40.92  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=39.6

Q ss_pred             HHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17040        255 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM  302 (354)
Q Consensus       255 ~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~  302 (354)
                      ..+..|++++-.+-+.+.|++|.+++.+|.+...+...+..++..+..
T Consensus        54 ~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~  101 (206)
T PF13346_consen   54 SSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA  101 (206)
T ss_pred             HHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777877778899999999999999999999988887766554

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=95.47  E-value=0.15  Score=57.74  Aligned_cols=90  Identities=7%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             HhChhhHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        262 MEGLLDRSWVAG-VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF  339 (354)
Q Consensus       262 ~~gtl~rll~sP-v~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~  339 (354)
                      +|.++.|=.... .+++.+++++.+.-+.+.+++.++..++.++..|.+.. +..+..++++++..+++.+++.++++++
T Consensus       478 eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~  557 (1394)
T TIGR00956       478 ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVT  557 (1394)
T ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444333333 37889999999999999999998888888877888764 4466667777778888999999999999


Q ss_pred             cchhhhhhhhhh
Q psy17040        340 EWKLYNGNKKQD  351 (354)
Q Consensus       340 k~~~~a~~~~~~  351 (354)
                      +|...|..++-+
T Consensus       558 ~~~~~A~~~~~~  569 (1394)
T TIGR00956       558 KTLSEAMTPAAI  569 (1394)
T ss_pred             CCHHHHHHHHHH
Confidence            999999886654

>KOG0059|consensus

Probab=95.20  E-value=3.5  Score=44.79  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHH
Q psy17040        252 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF  331 (354)
Q Consensus       252 ~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~l  331 (354)
                      ......+.||+.+.--....+++++..+.++-.+--+++.++-..++.. ....|+....++...++++.++|......+
T Consensus       314 ~~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~s~i~l  392 (885)
T KOG0059|consen  314 VFLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLI-FVLIFGFFAGNNTVIILLLLLLYIRSAIPL  392 (885)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HhheeecccccchHHHHHHHHHHHHHHHHH
Confidence            3345678999888877889999999999999888888887776555443 345666555677788888888999999999


Q ss_pred             HHHHHHhccchhhhhhhh
Q psy17040        332 VFGRKNIFEWKLYNGNKK  349 (354)
Q Consensus       332 Gllis~l~k~~~~a~~~~  349 (354)
                      ..+.+.+++.+..+..+.
T Consensus       393 ~y~~s~~f~~~~~~~v~~  410 (885)
T KOG0059|consen  393 TYILSFIFSKESTASVIL  410 (885)
T ss_pred             HHHHHHHhcCCcCceeeh
Confidence            999999999888876643

>PLN03140 ABC transporter G family member; Provisional

Probab=95.19  E-value=0.38  Score=54.79  Aligned_cols=79  Identities=5%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040        274 VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDS  352 (354)
Q Consensus       274 v~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~  352 (354)
                      .+++.+.+++++.-+.+.++..+++.++.++..|.... +..+..++++++..+++.+++.++++++++...|..++-+.
T Consensus       608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~  687 (1470)
T PLN03140        608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV  687 (1470)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            37889999999999999999999998888888888764 55666777778888999999999999999999998876543

>KOG0061|consensus

Probab=94.38  E-value=0.78  Score=47.57  Aligned_cols=76  Identities=7%  Similarity=0.078  Sum_probs=62.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchh-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040        275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQ  350 (354)
Q Consensus       275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~-~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~  350 (354)
                      +...++++|.++.+.+.++...+...+.++..|.+.... .....++.++..+++.++|+++++..+|...|..++.
T Consensus       429 ~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~  505 (613)
T KOG0061|consen  429 RLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP  505 (613)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence            678899999999999999999998888888888776433 4455566677888899999999999999887776553

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=94.18  E-value=0.43  Score=54.25  Aligned_cols=77  Identities=6%  Similarity=-0.083  Sum_probs=63.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch-h-------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q psy17040        275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-D-------LLLVIILTILQGLCGMCFVFGRKNIFEWKLYNG  346 (354)
Q Consensus       275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g-~-------~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~  346 (354)
                      +...++++|++.-+...+++.+++.++.++..|.+... .       ....+++.+++.+++.++|++++++++|...|.
T Consensus      1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956      1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence            78899999999999999999988887777777776532 1       456666777788889999999999999999998


Q ss_pred             hhhhh
Q psy17040        347 NKKQD  351 (354)
Q Consensus       347 ~~~~~  351 (354)
                      .++-+
T Consensus      1249 ~~~~~ 1253 (1394)
T TIGR00956      1249 VLASL 1253 (1394)
T ss_pred             HHHHH
Confidence            87654

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=94.14  E-value=0.7  Score=41.99  Aligned_cols=48  Identities=4%  Similarity=0.005  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy17040        252 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL  299 (354)
Q Consensus       252 ~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l  299 (354)
                      ..+...-.|++++.++.+++.|+++.+...+|++......++..++.+
T Consensus        58 i~~~~~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~  105 (241)
T TIGR03732        58 ICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILF  105 (241)
T ss_pred             HHHHHHHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455678888999999999999999999999998888777666554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>TIGR00439 ftsX putative protein insertion permease FtsX

Probab=93.85  E-value=6  Score=37.37  Aligned_cols=92  Identities=8%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----c-----CC-CCCceEEE-EeCCCCcccccCCCC
Q psy17040         30 TWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAI----G-----RD-PTGLHLAI-VNQEMDWATKACPVL   98 (354)
Q Consensus        30 ~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~----~-----~~-~~~~~vav-vd~D~~~~~~~~~~~   98 (354)
                      .|+.+-..-++.-++ .++|||..-+..++.-.+.+++.|...    +     .. ..++.|-+ .++|.++.       
T Consensus         8 ~~~~~h~~~~~~~~~-~l~r~~~~s~~si~ti~i~L~l~g~~~l~~~n~~~~~~~~~~~~~i~vyl~~~~~~~-------   79 (309)
T TIGR00439         8 VFSLQVEYARSALKQ-DLRQQPFGTLLTLIVIAVSLTLPLVMYLGIKNGQSALTQLYPSPQITVYLEKALAQS-------   79 (309)
T ss_pred             HHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeCCCCCHH-------
Confidence            477777677778888 999999766654444444444433221    1     11 34456654 45444432       


Q ss_pred             CCCcccchhHHHHhhCCCCc-ccccccCCHHHHHHHhHc
Q psy17040         99 SNCSFTHLSCRYLNSLPNDT-IIKDYYPDPESAINAVRV  136 (354)
Q Consensus        99 ~~~~~~~~s~~li~~l~~~~-~~~~~~~s~~ea~~~l~~  136 (354)
                             ..+.+.+.+++.+ .....+.|+|||.+.+++
T Consensus        80 -------~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~  111 (309)
T TIGR00439        80 -------DADTVVSLLTRDKGVENINYISREDGLAEFQS  111 (309)
T ss_pred             -------HHHHHHHHHhCCCCccEEEEECHHHHHHHHHH
Confidence                   3456777887765 334566789999998876

FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=93.79  E-value=2.5  Score=38.99  Aligned_cols=111  Identities=17%  Similarity=0.222  Sum_probs=72.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17040        229 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV  308 (354)
Q Consensus       229 ~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v  308 (354)
                      ..++.-|+..|++....+..+...+..++.. ++ +   -+.-.+.++..+..++.+.......+...+++.+ ..++|.
T Consensus        65 ~~~~~~~l~~G~~~w~f~~~~i~~~~~s~~~-n~-~---li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~-~i~~~~  138 (263)
T COG1682          65 GLNFLAYLLAGLILWFFFSEAISEGAGSVVA-NA-A---LIKKINFPPLILPVARTLSRLFNFLIHLIIILIF-LIILGV  138 (263)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhHHHHhhh-hH-H---HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Confidence            4577788888887665544444444444433 32 1   1233466788888999999988888877555444 445665


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhh
Q psy17040        309 ECKGDLLLVIILTILQGLCGMCFVFGRKNI---FEWKLYN  345 (354)
Q Consensus       309 ~~~g~~~~~ll~~~~~~l~~~~lGllis~l---~k~~~~a  345 (354)
                      +...++..+.....+..+.+.|+|+.+|.+   .|+-++.
T Consensus       139 ~~s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i  178 (263)
T COG1682         139 EPSWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQI  178 (263)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHH
Confidence            556677777777777888888999987766   4454444

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=92.87  E-value=0.17  Score=46.12  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040         34 LFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR   74 (354)
Q Consensus        34 ~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~   74 (354)
                      .+.++.+||+| +..|||..+++.++.|+++++++++.++.
T Consensus         3 ~~~~l~~rel~-~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~   42 (253)
T TIGR03861         3 CFNGIVLREAL-RFVQQRSRFLSALVRPLLWLLVFAAGFRA   42 (253)
T ss_pred             HHHHHHHHHHH-HHHHhhHHHHHHHHhHHHHHHHHHHHHHh
Confidence            56788999999 99999999999999999999999988864

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional

Probab=92.78  E-value=8.9  Score=36.23  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----c-----CC-CCCceEEE-EeCCCCcccccCCCCC
Q psy17040         31 WIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAI----G-----RD-PTGLHLAI-VNQEMDWATKACPVLS   99 (354)
Q Consensus        31 ~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~----~-----~~-~~~~~vav-vd~D~~~~~~~~~~~~   99 (354)
                      |+.+=.-.++.-++ .++|||..=+..++.-.+.+++.|..+    +     .. .+++.|.+ .+.|-++.        
T Consensus         9 ~~~~h~~~~~~~~~-~l~rn~~~s~~si~~i~i~L~l~g~~~l~~~n~~~~~~~~~~~~ei~vyl~~~~~~~--------   79 (309)
T PRK11026          9 FNEQVRYAWRGALA-DLKRKPLATLLTVMVIAISLTLPSVCYLVWKNVNQAATQWYPSPQLTVYLDKTLDDD--------   79 (309)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEECCCCCHH--------
Confidence            33333345677788 999999766654444444444433221    1     11 34566665 44444331        


Q ss_pred             CCcccchhHHHHhhCCCCc-ccccccCCHHHHHHHhHc
Q psy17040        100 NCSFTHLSCRYLNSLPNDT-IIKDYYPDPESAINAVRV  136 (354)
Q Consensus       100 ~~~~~~~s~~li~~l~~~~-~~~~~~~s~~ea~~~l~~  136 (354)
                            ..+++.+.+++.+ ..-..+.|+|||.+.+++
T Consensus        80 ------~~~~l~~~L~~~~~V~~v~~vskeeal~~l~~  111 (309)
T PRK11026         80 ------AANAVVEQLKAEDGVEKVNYLSREEALGEFRN  111 (309)
T ss_pred             ------HHHHHHHHHhCCCCcceEEEECHHHHHHHHHH
Confidence                  3456777787655 334566789999998876

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=90.57  E-value=0.43  Score=41.30  Aligned_cols=40  Identities=10%  Similarity=0.292  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhhhhhcChhHH-HHHHHHHHHHHHHHHHHhcC
Q psy17040         34 LFLTISMLVITSSTLFSPRVM-LFIFALPVMQVILFCLAIGR   74 (354)
Q Consensus        34 ~~~~i~~~elk~~~~Rdk~~l-~~~il~Pli~~~l~~~~~~~   74 (354)
                      +++++.+||+| +.+|||... ++.++.|+++.++++..+..
T Consensus         2 q~~~l~~r~~~-~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~   42 (210)
T PF01061_consen    2 QIWALLRREFK-RFWRNPFLGLIWSLIFPLLLLLIFGFIFGK   42 (210)
T ss_pred             HHHHHHHHHHH-HHHCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999 999999887 99999999999999988865

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=89.71  E-value=9  Score=34.20  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             HHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHHHHHHHH
Q psy17040        255 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM-CGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFV  332 (354)
Q Consensus       255 ~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~-~i~~~i~l~~~~~~f~v~~~g-~~~~~ll~~~~~~l~~~~lG  332 (354)
                      ..+.++-++|.+++.+.-|++.....+.+-++...+. ++...+++..+....++++.. +....++..+...+...++.
T Consensus        52 ~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~  131 (229)
T PF06182_consen   52 WEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIF  131 (229)
T ss_pred             HHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777899999999999999887777666654444 333443444444455666532 33333333333344444555


Q ss_pred             HHHHHh
Q psy17040        333 FGRKNI  338 (354)
Q Consensus       333 llis~l  338 (354)
                      .+++.+
T Consensus       132 ~~~~~l  137 (229)
T PF06182_consen  132 FIIGLL  137 (229)
T ss_pred             HHHHHH
Confidence            554443

>KOG0065|consensus

Probab=87.65  E-value=9.5  Score=42.60  Aligned_cols=79  Identities=9%  Similarity=0.082  Sum_probs=69.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Q psy17040        273 GVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC-KGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQD  351 (354)
Q Consensus       273 Pv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~-~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~  351 (354)
                      =.+++...++-.+.-+...++.+.++.++.++..|... .+..+-.++++++..++++++=-++++++++...|+.+|-+
T Consensus       529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~  608 (1391)
T KOG0065|consen  529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGI  608 (1391)
T ss_pred             ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHH
Confidence            35788999999999999999999999999999999876 46678888888899999999999999999999999988654

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=86.77  E-value=0.93  Score=41.37  Aligned_cols=38  Identities=11%  Similarity=0.019  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhhhcC-hhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040         36 LTISMLVITSSTLFS-PRVMLFIFALPVMQVILFCLAIGR   74 (354)
Q Consensus        36 ~~i~~~elk~~~~Rd-k~~l~~~il~Pli~~~l~~~~~~~   74 (354)
                      .++.+||++ +++|+ |..++..++.|++++++++..++.
T Consensus         8 ~~~~~R~~~-~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~   46 (253)
T TIGR01291         8 AAVWRRNAL-AWKKVAAASVLGNLADPLIYLFGLGVGLGK   46 (253)
T ss_pred             HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            577899999 99999 999999999999999999998864

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=85.58  E-value=23  Score=34.89  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=38.6

Q ss_pred             HHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccchhHHHHH
Q psy17040        258 IIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG---VECKGDLLLVI  318 (354)
Q Consensus       258 ~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~---v~~~g~~~~~l  318 (354)
                      .+|.+++..|.+++.|++|+..+.+.+..+.....++..+.+.......+   -+..++...++
T Consensus       372 ~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v  435 (536)
T COG3559         372 HGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVV  435 (536)
T ss_pred             hhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHH
Confidence            34444466899999999999999988887777666655554433333333   23344554444

>KOG0065|consensus

Probab=85.49  E-value=3.5  Score=45.82  Aligned_cols=79  Identities=6%  Similarity=0.006  Sum_probs=65.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhcc
Q psy17040        275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSY  353 (354)
Q Consensus       275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g-~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~~  353 (354)
                      +...++++.++.=+...++|+.++.++.++-.|.++.. ..++.++..+++.+....+|+++.++++|.+.|+.+.-+-|
T Consensus      1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            77889999999999999999999888777777877643 35566667778888899999999999999999998765433

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=83.38  E-value=1  Score=40.43  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=30.3

Q ss_pred             HHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040         41 LVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR   74 (354)
Q Consensus        41 ~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~   74 (354)
                      ||+| +.+|||..++..++.|+++.++++..++.
T Consensus         1 re~~-~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~   33 (236)
T TIGR01247         1 RELK-RFIRSRSRIVGSILNPLLWLIFFGKGWSG   33 (236)
T ss_pred             CchH-HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6899 99999999999999999999999987764

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=83.29  E-value=1.3  Score=38.97  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy17040         32 IVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPT   77 (354)
Q Consensus        32 ~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~~~~   77 (354)
                      |+.++.+++||+| --+|.|..+...+++-+..+.+|++.++.|++
T Consensus         1 m~~~~~l~~rdLr-l~~R~~~~~~~~l~F~l~Vi~lfp~~vGpd~~   45 (221)
T COG2386           1 MMAFLALFKRDLR-LEFRAKAGILNPLLFFLLVITLFPLAVGPDPQ   45 (221)
T ss_pred             ChhHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHhccccCCchh
Confidence            3567899999999 99999999999999988888888887776554

>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function

Probab=80.55  E-value=44  Score=33.36  Aligned_cols=46  Identities=9%  Similarity=0.073  Sum_probs=33.3

Q ss_pred             HhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040        262 MEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG  307 (354)
Q Consensus       262 ~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~  307 (354)
                      |.+.++-+.+-|+++.+++.+|++...++-..-...+++......+
T Consensus       317 E~~~~~~l~sLPi~~~~~v~sKil~~~~i~~~l~~~i~i~~~~~~~  362 (449)
T PF09847_consen  317 EGEGFEFLRSLPIKKREFVRSKILIPSIIPSALSLIIVIVSSIYNG  362 (449)
T ss_pred             hhhcchhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4455788899999999999999999988877544444444443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 31/243 (12%), Positives = 73/243 (30%), Gaps = 71/243 (29%)

Query: 105 HLSCRYLNSLPNDTIIKDY-YPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDA 163
               + + S+  D  + ++   D +    ++               +   +  +++ +DA
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--------------LSKEEIDHIIMSKDA 60

Query: 164 DEETLDQSEIRVW--LDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK-IADIPIQF 220
              TL       W  L    + +   +   L+++Y  F    + T  + P  +  + I+ 
Sbjct: 61  VSGTL----RLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 221 KEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLD-RSWVAGVTPLEI 279
           ++ +Y  N       V                        R++  L  R  +  + P + 
Sbjct: 116 RDRLYNDNQVFAKYNV-----------------------SRLQPYLKLRQALLELRPAKN 152

Query: 280 LFSHVITQFVVM--CGQTALVL-------IFMIFVFGV------ECKGDLLLVIILTILQ 324
           +          +   G+T + L       +     F +       C        +L +LQ
Sbjct: 153 VLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLEMLQ 203

Query: 325 GLC 327
            L 
Sbjct: 204 KLL 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
3cni_A	156	Putative ABC type-2 transporter; structural genomi	99.57
2p0s_A	143	ABC transporter, permease protein, putative; APC90	96.41

>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}

Probab=99.57  E-value=3.6e-15  Score=125.58  Aligned_cols=143  Identities=15%  Similarity=0.203  Sum_probs=94.8

Q ss_pred             cCCCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccc-cccCCHHHHHHHhHcCCeEEEEEeCcChHH
Q psy17040         73 GRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIK-DYYPDPESAINAVRVGDAWGALYFTDNFTD  151 (354)
Q Consensus        73 ~~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~-~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~  151 (354)
                      +.+++++|+||||+|+++               +|+++++.++ -.... .+..+++|+++++++|+++++|+||+||++
T Consensus         5 ~~~~~~~~vaVvd~D~s~---------------~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~~~~~l~IP~~Fs~   68 (156)
T 3cni_A            5 EKSTVGQKVAIVREDTGT---------------IAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQ   68 (156)
T ss_dssp             ------CEEEEEECCCSH---------------HHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHTCSEEEEECTTHHH
T ss_pred             cCCCCCCcEEEEECCCCH---------------HHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCCeeEEEEECcchHH
Confidence            346788999999999987               7899999886 22111 123689999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccccceEEEE--EcCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCeEEeccccc
Q psy17040        152 ALVARMVLGRDADEETLDQSEIRVW--LDMS---NQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYG  226 (354)
Q Consensus       152 ~l~~~~~~g~~~~~~~~~~~~i~i~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  226 (354)
                      ++.+    |++        ++++++  .|++   +...+..++++++.+........... +..++....|+++++..+.
T Consensus        69 ~l~~----g~~--------~~i~v~~~~d~~~~~~~~~~~~~~~y~~~i~~~~~~~~~~~-~~~~~~~~~Pi~~~~~~~~  135 (156)
T 3cni_A           69 SLES----GEK--------ARLEIVWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLND-PKKAQLLFDPLEIVQHTYL  135 (156)
T ss_dssp             HHHH----TCC--------EEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHTTGGGGSSC-STTSGGGTCCEEEEEEEEE
T ss_pred             HHhC----CCC--------CeEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHhCCeeeeEEEEE
Confidence            9984    774        789986  7877   66666666666655432211111111 3334445578988776664


Q ss_pred             CCCCChhHHHHHHHHHHHHH
Q psy17040        227 SNDPSFTDFVAPGVILTIVF  246 (354)
Q Consensus       227 ~~~~~~~~~~~p~ll~~~l~  246 (354)
                      +++. |.+ +.|+++..+++
T Consensus       136 ~~~~-~~~-~~p~~i~~~~~  153 (156)
T 3cni_A          136 RGSL-FKN-HSPEAIMNVFY  153 (156)
T ss_dssp             TTEE-ETT-CCHHHHHHHHT
T ss_pred             cCce-ecc-CCHHHHHHHHh
Confidence            3322 477 88997665543

>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative ABC transporter, porphyromonas gingiVal structural genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP: c.94.1.3

Probab=96.41  E-value=0.011  Score=47.92  Aligned_cols=80  Identities=8%  Similarity=0.031  Sum_probs=50.5

Q ss_pred             eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc-c-cccccCCHHHHHHHhH-cCCeEEEEEeCcChHHHHHHH
Q psy17040         80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT-I-IKDYYPDPESAINAVR-VGDAWGALYFTDNFTDALVAR  156 (354)
Q Consensus        80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~-~-~~~~~~s~~ea~~~l~-~g~v~~~v~IP~~Fs~~l~~~  156 (354)
                      +|||||+++.-                    .+.++.+. . ......++++|+++++ ++++|++++||++..      
T Consensus        11 ~IaVVd~sg~~--------------------~~~~~~~~~~~~~~~~~~~~~ak~~l~~~~~i~g~L~I~~~~~------   64 (143)
T 2p0s_A           11 TIAIADRTGEY--------------------EQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLL------   64 (143)
T ss_dssp             EEEEEETTSSS--------------------GGGGTTCSSSEEEECSSCHHHHHHHHHHHHCCSEEEEECSCTT------
T ss_pred             eEEEECCCccH--------------------HHHhcCCCceEEEecCCCHHHHHHHhhccCceeEEEEECcccc------
Confidence            89999997531                    22444433 2 2225567899999999 999999999997621      


Q ss_pred             HhhCCCCCccccccceEEEEEcCc-hHHHHHHHHHHHHHHH
Q psy17040        157 MVLGRDADEETLDQSEIRVWLDMS-NQQIGLMLNRDLQLSY  196 (354)
Q Consensus       157 ~~~g~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~l~~~~  196 (354)
                        ++         .+.++.|.+.. +......+++.+++..
T Consensus        65 --~~---------~~~~~~ys~~~~~~~~~~~l~~~L~~~~   94 (143)
T 2p0s_A           65 --ED---------PNAVAIYGYKQLPASVSNHISRILSDYL   94 (143)
T ss_dssp             --TC---------TTSEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred             --cC---------CceEEEEEcCCCCHhHHHHHHHHHHHHH
Confidence              12         14677776643 3333334555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d2p0sa1	136	Uncharacterized protein PG0945 {Porphyromonas ging	93.69
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	81.58

>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: PG0945 N-terminal domain-like
domain: Uncharacterized protein PG0945
species: Porphyromonas gingivalis [TaxId: 837]

Probab=93.69  E-value=0.12  Score=39.48  Aligned_cols=80  Identities=9%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc---ccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHH
Q psy17040         80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT---IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVAR  156 (354)
Q Consensus        80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~---~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~  156 (354)
                      .|+|+|+.+-                    +.+.++++.   +......+.+++++...+..++|+++||++..+     
T Consensus         4 ~IaVvDesG~--------------------f~~~fk~t~~~~y~~~~~~~~e~~k~~~~~~~~~glL~Ip~~~~~-----   58 (136)
T d2p0sa1           4 TIAIADRTGE--------------------YEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLLE-----   58 (136)
T ss_dssp             EEEEEETTSS--------------------SGGGGTTCSSSEEEECSSCHHHHHHHHHHHHCCSEEEEECSCTTT-----
T ss_pred             EEEEEcCCCc--------------------chhhccCCCceEEEccCccCHHHHHHhhccCCccEEEEECccccc-----
Confidence            5899999752                    345666554   222223456777777778889999999986321     


Q ss_pred             HhhCCCCCccccccceEEEEEcCc-hHHHHHHHHHHHHHHH
Q psy17040        157 MVLGRDADEETLDQSEIRVWLDMS-NQQIGLMLNRDLQLSY  196 (354)
Q Consensus       157 ~~~g~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~l~~~~  196 (354)
                          .        ...+.+|.+.+ .......+++.+.+.+
T Consensus        59 ----~--------~~~i~fyS~~sps~s~~~~Ie~~ie~~l   87 (136)
T d2p0sa1          59 ----D--------PNAVAIYGYKQLPASVSNHISRILSDYL   87 (136)
T ss_dssp             ----C--------TTSEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred             ----C--------CcceEEEEcCCCCHhHHHHHHHHHHHHH
Confidence                1        14688887653 2233344455554444

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=0.5  Score=34.80  Aligned_cols=51  Identities=12%  Similarity=-0.048  Sum_probs=39.1

Q ss_pred             CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040         78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY  144 (354)
Q Consensus        78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~  144 (354)
                      +.+|-|||.|..                ..+.+.+.|++.++.+....|.+||.+.+++.++|.++.
T Consensus         2 tp~ILiVDDd~~----------------~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~   52 (121)
T d1xhfa1           2 TPHILIVEDELV----------------TRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIM   52 (121)
T ss_dssp             CCEEEEECSCHH----------------HHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred             CCEEEEEECCHH----------------HHHHHHHHHHHCCCEEEEECChHHHHHHHHhcCCCEEEe
Confidence            457888888754                234455667777777778889999999999999998874