Psyllid ID: psy17068


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MSAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTDRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGYRDQNADIAIKTADTANKSAVNANNIKENSHENLPLLKSQLSNSEAPKSMV
ccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHcccccccHHHHccccccccccccccccccccccccccccccc
ccHHHHHccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHHHHHccccccccccc
MSAHYMLNEKFIIFLDlthqngegswtsnnvpdtldqylschtdrdqnrgyhnqnrgyrnqirgyrdqnhgyreqnrgyreqnrgyrdhnrgyreqkrgyreqnrgyrdqnaDIAIKTADTanksavnannikenshenlpllksqlsnseapksmv
MSAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTdrdqnrgyhnqnrgyrnqirgyrdqnhgyreqnrgyreqnrgyrdhnrgyreqkrgyreqnrgyrdqNADIAIKTADTANKSAVNANNikenshenlpllksqlsnseapksmv
MSAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTDRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGYRDQNADIAIKTADTANKSAVNANNIKENSHENLPLLKSQLSNSEAPKSMV
****YMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCH*******************************************************************************************************************
****Y*LNEKFIIFLDLTH******************************************************************************************************************************************
MSAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTDRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGYRDQNADIAIKTADTANKSAVNANNIKENSHENLPLLKSQ***********
*SAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHT************************Q*************Q*****DHNR***EQKRGY*EQNRGYRDQNADIAI*************N****************L**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTDRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGYRDQNADIAIKTADTANKSAVNANNIKENSHENLPLLKSQLSNSEAPKSMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
225707776 380 CD82 antigen [Osmerus mordax] 0.273 0.113 0.543 9e-10
449268350141 Cerebral peptide 1, partial [Columba liv 0.528 0.588 0.361 5e-08
156383407213 predicted protein [Nematostella vectensi 0.426 0.314 0.417 1e-07
392553400189 hypothetical protein PspoU_19202 [Pseudo 0.522 0.433 0.353 1e-07
444721612 299 hypothetical protein TREES_T100021490 [T 0.369 0.193 0.468 8e-07
365824887 779 hypothetical protein HMPREF0045_00483 [A 0.343 0.069 0.290 1e-06
409075195 292 hypothetical protein AGABI1DRAFT_109335 0.662 0.356 0.288 3e-06
398343704 369 hypothetical protein LinasL1_11718 [Lept 0.477 0.203 0.346 2e-05
156383409241 predicted protein [Nematostella vectensi 0.350 0.228 0.419 4e-05
407279025 756 transcription termination factor Rho [Rh 0.420 0.087 0.469 6e-05
>gi|225707776|gb|ACO09734.1| CD82 antigen [Osmerus mordax] Back     alignment and taxonomy information
 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 35/57 (61%)

Query: 55  NRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGYRDQN 111
           N GY     GY + NHGY E NRGY E NRGY + N GY E  RGY+E N GY + N
Sbjct: 275 NHGYPEPNHGYPEPNHGYPEPNRGYPEPNRGYPEPNCGYPEPNRGYQEPNLGYPETN 331




Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449268350|gb|EMC79218.1| Cerebral peptide 1, partial [Columba livia] Back     alignment and taxonomy information
>gi|156383407|ref|XP_001632825.1| predicted protein [Nematostella vectensis] gi|156219887|gb|EDO40762.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|392553400|ref|ZP_10300537.1| hypothetical protein PspoU_19202 [Pseudoalteromonas spongiae UST010723-006] Back     alignment and taxonomy information
>gi|444721612|gb|ELW62339.1| hypothetical protein TREES_T100021490 [Tupaia chinensis] Back     alignment and taxonomy information
>gi|365824887|ref|ZP_09366847.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii C83] gi|365259075|gb|EHM89070.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii C83] Back     alignment and taxonomy information
>gi|409075195|gb|EKM75578.1| hypothetical protein AGABI1DRAFT_109335 [Agaricus bisporus var. burnettii JB137-S8] Back     alignment and taxonomy information
>gi|398343704|ref|ZP_10528407.1| hypothetical protein LinasL1_11718 [Leptospira inadai serovar Lyme str. 10] Back     alignment and taxonomy information
>gi|156383409|ref|XP_001632826.1| predicted protein [Nematostella vectensis] gi|156219888|gb|EDO40763.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|407279025|ref|ZP_11107495.1| transcription termination factor Rho [Rhodococcus sp. P14] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
ZFIN|ZDB-GENE-030131-8546 1247 si:ch1073-459j12.1 "si:ch1073- 0.388 0.048 0.390 1.2e-11
DICTYBASE|DDB_G0279491 574 DDB_G0279491 "Peptidyl-prolyl 0.611 0.167 0.345 5.1e-07
FB|FBgn0261793 1715 Trf2 "TATA box binding protein 0.445 0.040 0.328 9.3e-07
GENEDB_PFALCIPARUM|PFF0655c 1363 PFF0655c "adapter-related prot 0.840 0.096 0.301 1.2e-06
UNIPROTKB|C6KSX7 1363 PFF0655c "Adapter-related prot 0.840 0.096 0.301 1.2e-06
UNIPROTKB|I3LUL2 561 ZNF768 "Uncharacterized protei 0.611 0.171 0.275 1.3e-06
DICTYBASE|DDB_G0283697 853 DDB_G0283697 "unknown" [Dictyo 0.585 0.107 0.282 1.8e-06
UNIPROTKB|P71590 527 fhaA "FHA domain-containing pr 0.337 0.100 0.534 2.5e-06
GENEDB_PFALCIPARUM|MAL13P1.262 2006 MAL13P1.262 "hypothetical prot 0.853 0.066 0.276 3.8e-06
UNIPROTKB|Q8IDI0 2006 MAL13P1.262 "Uncharacterized p 0.853 0.066 0.276 3.8e-06
ZFIN|ZDB-GENE-030131-8546 si:ch1073-459j12.1 "si:ch1073-459j12.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 156 (60.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 25/64 (39%), Positives = 42/64 (65%)

Query:    47 QNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYRE-QNR 105
             ++ GYH+Q++GY  + +GY D+  GY  +N+GY  +N+GY + N+ Y  +  GY E  N 
Sbjct:   856 ESYGYHHQSQGYHEETQGYHDETQGYHNENQGYHNENQGYHNENQRYHHE--GYSEGYNE 913

Query:   106 GYRD 109
             GY++
Sbjct:   914 GYQE 917


GO:0007155 "cell adhesion" evidence=IEA
GO:0004181 "metallocarboxypeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
DICTYBASE|DDB_G0279491 DDB_G0279491 "Peptidyl-prolyl cis-trans isomerase G" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0261793 Trf2 "TATA box binding protein-related factor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFF0655c PFF0655c "adapter-related protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|C6KSX7 PFF0655c "Adapter-related protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUL2 ZNF768 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283697 DDB_G0283697 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P71590 fhaA "FHA domain-containing protein FhaA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|MAL13P1.262 MAL13P1.262 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IDI0 MAL13P1.262 "Uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.002
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 44  DRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRG-YRE 102
             D+      ++ G R   R  RD+     + NR  R    G     RG R  +R   R+
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRD 270

Query: 103 QNRGYRDQNAD 113
           +         +
Sbjct: 271 RRGRRGGDGGN 281


Length = 672

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 97.7
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 97.53
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
Probab=97.70  E-value=5.1e-06  Score=64.62  Aligned_cols=11  Identities=36%  Similarity=0.739  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCC
Q psy17068         57 GYRNQIRGYRD   67 (157)
Q Consensus        57 GYp~~~qGYP~   67 (157)
                      |||++.+|||+
T Consensus       392 ~~~~~~~~~p~  402 (448)
T 2z73_A          392 GYAPPPQGYPP  402 (448)
T ss_dssp             -----------
T ss_pred             CCCCCcCCCCC
Confidence            44444445544



>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00