Psyllid ID: psy1706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MVENKKSPVDTGDQILNLELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
cccccccccccccccccccccccccccccccEEEEEccccccccEEEEEccccccHHHHHHHHHHcccHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccccccccEEEEcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHEEEEcccccccEEEEEccccHHHHHHHHHcccccccccHHcHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHHcccccccEEEEcccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHccccccHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccEEHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccEEEEEEcc
ccccccccccccccccccccccccccEEEEEEEEEcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHEEEHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHEEEHHHHHccccccHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHEHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccHcccHHHHHHHHHHHHHHHHHHccHEEEHcccccccccccHcHEEEEEEcccccccccEEEEEEcccccHHccccHHHHHcccccEEEEEEHHHHHccccHHHHHHHHHHHHHHHcccccHEcHHHEHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHccccccccEEEEEEEc
mvenkkspvdtgdQILNLElnqyggtsptkprlaiglgnvwrfpylcykngggaflVPYLLTAILAGMPMFFMELALGQMLsvgglgvfkiapifKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLrtdvpwrncnnfwntkncvnpyervglkcWNATSTLYSKEMYCYInqknvstrvltdpVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGitlpgaidgIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGitlpgaidgikyyiipnfsklgeseVWIDAVTQIFFSYGLGLGTLVALGSynkfnnnvyKDAMLVCAINSSTSMFAGFVIFSVIGFmaheqrrpveevatsgpglaflaypsavlqlpgapiwSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
mvenkkspvdtgDQILNLELNqyggtsptkprLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWntkncvnpyerVGLKCWNATSTLYSKEMYCYinqknvstrvlTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
MVENKKSPVDTGDQILNLELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKElfvlvvcvvsflIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
***************LNLELNQYGGT**TKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFF*
**********************YGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
*********DTGDQILNLELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
*******************LNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHi
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHi
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MVENKKSPVDTGDQILNLELNQYGGTSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
P23978 599 Sodium- and chloride-depe yes N/A 0.461 0.415 0.667 1e-108
P31648 599 Sodium- and chloride-depe yes N/A 0.461 0.415 0.667 1e-108
P30531 599 Sodium- and chloride-depe yes N/A 0.461 0.415 0.660 1e-107
P48057 598 Sodium- and chloride-depe N/A N/A 0.505 0.456 0.660 1e-104
Q9NSD5 602 Sodium- and chloride-depe no N/A 0.507 0.455 0.605 1e-96
P31646 602 Sodium- and chloride-depe no N/A 0.507 0.455 0.597 3e-96
Q2PG55 609 Sodium- and chloride-depe N/A N/A 0.507 0.449 0.605 6e-96
P31649 602 Sodium- and chloride-depe no N/A 0.507 0.455 0.590 8e-96
A5PJX7 602 Sodium- and chloride-depe no N/A 0.507 0.455 0.594 5e-95
P48055 614 Sodium- and chloride-depe no N/A 0.507 0.446 0.601 5e-94
>sp|P23978|SC6A1_RAT Sodium- and chloride-dependent GABA transporter 1 OS=Rattus norvegicus GN=Slc6a1 PE=1 SV=1 Back     alignment and function desciption
 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/274 (66%), Positives = 227/274 (82%)

Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
           +R + Q+TDG++  G +RW LA TL + WV+ YFCIWKGV WTGKVVYF+A +PY +LI 
Sbjct: 194 ERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLII 253

Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
           L  RG+TLPGA +GI +YI PNF KL +SEVW+DA TQIFFSYGLGLG+L+ALGSYN F+
Sbjct: 254 LFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFH 313

Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
           NNVY+D+++VC INS TSMFAGFVIFS++GFMAH  +R + +VA SGPGLAFLAYP AV 
Sbjct: 314 NNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVT 373

Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFL 506
           QLP +P+W+ LFF MLL LG+DSQFCTVEGFITA+VDE+P LLR R+ELF+  VC+VS+L
Sbjct: 374 QLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYL 433

Query: 507 IGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
           IG   I QGG+Y+F++FD Y+ SG SLLFL+FFE
Sbjct: 434 IGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFE 467
Terminates the action of GABA by its high affinity sodium-dependent reuptake into presynaptic terminals.
Rattus norvegicus (taxid: 10116)
>sp|P31648|SC6A1_MOUSE Sodium- and chloride-dependent GABA transporter 1 OS=Mus musculus GN=Slc6a1 PE=1 SV=2 Back     alignment and function description
>sp|P30531|SC6A1_HUMAN Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2 Back     alignment and function description
>sp|P48057|SC6A1_MUSCO Sodium- and chloride-dependent GABA transporter 1 OS=Mus cookii GN=Slc6a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NSD5|S6A13_HUMAN Sodium- and chloride-dependent GABA transporter 2 OS=Homo sapiens GN=SLC6A13 PE=1 SV=3 Back     alignment and function description
>sp|P31646|S6A13_RAT Sodium- and chloride-dependent GABA transporter 2 OS=Rattus norvegicus GN=Slc6a13 PE=2 SV=1 Back     alignment and function description
>sp|Q2PG55|S6A13_MACFA Sodium- and chloride-dependent GABA transporter 2 OS=Macaca fascicularis GN=SLC6A13 PE=2 SV=1 Back     alignment and function description
>sp|P31649|S6A13_MOUSE Sodium- and chloride-dependent GABA transporter 2 OS=Mus musculus GN=Slc6a13 PE=1 SV=1 Back     alignment and function description
>sp|A5PJX7|S6A13_BOVIN Sodium- and chloride-dependent GABA transporter 2 OS=Bos taurus GN=SLC6A13 PE=2 SV=1 Back     alignment and function description
>sp|P48055|S6A12_RABIT Sodium- and chloride-dependent betaine transporter OS=Oryctolagus cuniculus GN=SLC6A12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
158298670624 AGAP009768-PA [Anopheles gambiae str. PE 0.837 0.724 0.576 1e-171
268557010637 C. briggsae CBR-SNF-11 protein [Caenorha 0.829 0.703 0.518 1e-142
308461313609 CRE-SNF-11 protein [Caenorhabditis reman 0.829 0.735 0.516 1e-140
133952791610 Protein SNF-11 [Caenorhabditis elegans] 0.831 0.736 0.523 1e-135
393912319588 GABA neurotransmitter transporter-1A [Lo 0.831 0.763 0.509 1e-133
47218397 672 unnamed protein product [Tetraodon nigro 0.844 0.678 0.495 1e-132
312379300 676 hypothetical protein AND_08898 [Anophele 0.444 0.355 0.810 1e-131
170058382571 sodium/chloride dependent neurotransmitt 0.507 0.479 0.810 1e-130
157126935569 sodium/chloride dependent neurotransmitt 0.507 0.481 0.813 1e-130
332026316614 Sodium- and chloride-dependent GABA tran 0.466 0.410 0.810 1e-129
>gi|158298670|ref|XP_318854.4| AGAP009768-PA [Anopheles gambiae str. PEST] gi|157013996|gb|EAA13834.4| AGAP009768-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 326/565 (57%), Positives = 382/565 (67%), Gaps = 113/565 (20%)

Query: 33  LAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFKIA 92
           LAIGLGNVWRFPYLCYKNGGGAFL+PY +T  LAG+PMFFMELALGQML++GGLGVFKIA
Sbjct: 66  LAIGLGNVWRFPYLCYKNGGGAFLIPYFVTLFLAGIPMFFMELALGQMLTIGGLGVFKIA 125

Query: 93  PIFKG-----------------------------VGYAAAVMSCWMNIYYIVILAWAVFY 123
           PIFKG                             +GYAAAVMSCWMN+YYIVILAWA+FY
Sbjct: 126 PIFKGKRGSAFEFIRGGIVLIDRRCLILTLKKPGIGYAAAVMSCWMNVYYIVILAWAIFY 185

Query: 124 FFM--------------------------SLRTDVPWRNCNNFWNTKNCVNPYERVGLKC 157
           FFM                          S  +DVPWR          C N +  +    
Sbjct: 186 FFMSLRAGMCPPLIDALASIQSSASTRVTSFLSDVPWRT---------CDNAWNSI---- 232

Query: 158 WNATSTLYSKEMYCY--INQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAAT 215
            N  +    K++ C+  I      T++ +                 +N+      +LA  
Sbjct: 233 -NCVNPYDRKDLLCWETIGVNGTLTKICS-----------------LNSNNVSMSDLADP 274

Query: 216 LLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITD 275
           + L                   V  + +FP  L +  L         +   +RR L I+ 
Sbjct: 275 VKLG------------------VSVSTIFPENLSLKPLF-------VLSPSRRRTLMISS 309

Query: 276 GINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALLIRGITLP 335
           GI+ +G +RWELA TLLLVW++CYFCIWKGVKWTGKVVYFTALFPYFLL  LLIRGITLP
Sbjct: 310 GIDQVGSIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYFLLTILLIRGITLP 369

Query: 336 GAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAML 395
           GA +GIK+Y+ PN SKL ESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDA++
Sbjct: 370 GAFEGIKFYVSPNLSKLAESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDALI 429

Query: 396 VCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWS 455
           VC +NSSTSMFAGFVIFSV+GFMAHEQ+RPV EVA SGPGLAFLAYPSAVLQLPGAP+WS
Sbjct: 430 VCTVNSSTSMFAGFVIFSVVGFMAHEQQRPVAEVAASGPGLAFLAYPSAVLQLPGAPLWS 489

Query: 456 CLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQG 515
           CLFF MLL +GLDSQFCT+EGFITA++DEWPHLLR+RKE+F+ +VC++S+L+G  CI +G
Sbjct: 490 CLFFFMLLLIGLDSQFCTMEGFITAVIDEWPHLLRKRKEIFIAIVCMISYLVGLTCITEG 549

Query: 516 GMYIFQIFDSYAVSGFSLLFLMFFE 540
           GMY+FQI DSYAVSGF LLFLMFFE
Sbjct: 550 GMYVFQILDSYAVSGFCLLFLMFFE 574

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|268557010|ref|XP_002636494.1| C. briggsae CBR-SNF-11 protein [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|308461313|ref|XP_003092950.1| CRE-SNF-11 protein [Caenorhabditis remanei] gi|308252030|gb|EFO95982.1| CRE-SNF-11 protein [Caenorhabditis remanei] Back     alignment and taxonomy information
>gi|133952791|ref|NP_505873.2| Protein SNF-11 [Caenorhabditis elegans] gi|46850451|gb|AAT02634.1| GABA transporter protein [Caenorhabditis elegans] gi|94470489|gb|ABF20555.1| SNF-11 [Caenorhabditis elegans] gi|119662046|emb|CAA98519.2| Protein SNF-11 [Caenorhabditis elegans] Back     alignment and taxonomy information
>gi|393912319|gb|EJD76685.1| GABA neurotransmitter transporter-1A [Loa loa] Back     alignment and taxonomy information
>gi|47218397|emb|CAG01918.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|312379300|gb|EFR25619.1| hypothetical protein AND_08898 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170058382|ref|XP_001864898.1| sodium/chloride dependent neurotransmitter transporter [Culex quinquefasciatus] gi|167877478|gb|EDS40861.1| sodium/chloride dependent neurotransmitter transporter [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157126935|ref|XP_001661017.1| sodium/chloride dependent neurotransmitter transporter [Aedes aegypti] gi|108873078|gb|EAT37303.1| AAEL010681-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332026316|gb|EGI66450.1| Sodium- and chloride-dependent GABA transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
ZFIN|ZDB-GENE-060519-23 679 slc6a1a "solute carrier family 0.507 0.403 0.645 2.3e-146
ZFIN|ZDB-GENE-041210-296 578 slc6a1l "solute carrier family 0.507 0.474 0.624 9.1e-141
WB|WBGene00004910 610 snf-11 [Caenorhabditis elegans 0.503 0.445 0.635 1.5e-140
UNIPROTKB|E1BQT5 599 E1BQT5 "Transporter" [Gallus g 0.507 0.457 0.602 2.1e-139
RGD|620788 602 Slc6a13 "solute carrier family 0.522 0.468 0.568 5.4e-130
MGI|MGI:95629 602 Slc6a13 "solute carrier family 0.522 0.468 0.564 1.4e-129
UNIPROTKB|F1NN76 621 LOC100858230 "Transporter" [Ga 0.522 0.454 0.575 1e-128
UNIPROTKB|A5PJX7 602 SLC6A13 "Sodium- and chloride- 0.522 0.468 0.564 3.4e-128
UNIPROTKB|Q9NSD5 602 SLC6A13 "Sodium- and chloride- 0.522 0.468 0.571 4.3e-128
UNIPROTKB|E2QVS9 611 SLC6A13 "Uncharacterized prote 0.522 0.461 0.575 5.5e-128
ZFIN|ZDB-GENE-060519-23 slc6a1a "solute carrier family 6 (neurotransmitter transporter, GABA), member 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 971 (346.9 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
 Identities = 177/274 (64%), Positives = 217/274 (79%)

Query:   267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
             +R V Q+TDG+   G +R  LA TL + WV+ YFCIWKGV WTGKVVYF+A +PYF+L  
Sbjct:   193 ERNVHQMTDGLEKPGEIRVPLAITLAIAWVLVYFCIWKGVSWTGKVVYFSATYPYFMLFI 252

Query:   327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
             L IRG+TLPGA +GI +YI P+F KL ESEVW+DA TQIFFSYGLGLG+L+ALGSYN FN
Sbjct:   253 LFIRGVTLPGAKEGILFYITPDFEKLKESEVWLDAATQIFFSYGLGLGSLIALGSYNPFN 312

Query:   387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
             NNVY+D+++VC INS TSMFAGFVIFS++GFM+H  +RP+ +VA SGPGLAFLAYP AV 
Sbjct:   313 NNVYRDSIIVCCINSFTSMFAGFVIFSIVGFMSHVTKRPIADVAASGPGLAFLAYPEAVT 372

Query:   447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRRRKEXXXXXXXXXXXX 506
             QLP +P+W+ LFF MLL LG+DSQFCTVEGFITA+VDE+P LLR+R+E            
Sbjct:   373 QLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRKRREIFIACVCVVSYA 432

Query:   507 IGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
             IG   I QGG+Y+F++FD Y+ SG  LLFL+FFE
Sbjct:   433 IGLSNITQGGLYVFKLFDYYSASGMCLLFLVFFE 466
GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA
GO:0006836 "neurotransmitter transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005332 "gamma-aminobutyric acid:sodium symporter activity" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0015293 "symporter activity" evidence=IEA
ZFIN|ZDB-GENE-041210-296 slc6a1l "solute carrier family 6 (neurotransmitter transporter, GABA), member 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004910 snf-11 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQT5 E1BQT5 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|620788 Slc6a13 "solute carrier family 6 (neurotransmitter transporter, GABA), member 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:95629 Slc6a13 "solute carrier family 6 (neurotransmitter transporter, GABA), member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NN76 LOC100858230 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJX7 SLC6A13 "Sodium- and chloride-dependent GABA transporter 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NSD5 SLC6A13 "Sodium- and chloride-dependent GABA transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVS9 SLC6A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30531SC6A1_HUMANNo assigned EC number0.66050.46110.4156yesN/A
P23978SC6A1_RATNo assigned EC number0.66780.46110.4156yesN/A
P31648SC6A1_MOUSENo assigned EC number0.66780.46110.4156yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
cd11496 543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 1e-165
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 1e-137
cd11506 598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 1e-134
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 1e-122
cd11507 544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-121
cd11497 539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 1e-120
cd11496543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 1e-118
cd11510 542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 1e-116
cd11509 592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 1e-114
cd11511 541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 1e-113
cd11508 542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 1e-111
cd11500 544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 1e-109
cd11556 552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 1e-100
cd11501 601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 3e-94
cd11499 606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 3e-94
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 2e-93
cd11513 537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 2e-93
cd11514 555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 3e-87
cd11506598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 9e-87
cd11497539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 4e-86
cd11507544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-85
cd11510542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 1e-85
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 1e-85
cd11511541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 2e-84
cd11509592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 8e-83
cd11512 560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 1e-79
cd11498 585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 5e-79
cd11508542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 2e-78
cd11500544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 2e-77
cd11513537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 5e-73
cd11514555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 7e-72
cd11556552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 2e-70
cd11498585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 3e-70
cd11501601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 1e-66
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 1e-66
cd11512560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 1e-65
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 4e-65
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 4e-65
cd11499606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 7e-61
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 3e-59
cd11518 576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 5e-59
cd11518576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 4e-57
cd11521589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 7e-52
cd11517576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 2e-50
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 6e-50
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 5e-49
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 2e-47
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 1e-46
cd11516581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 6e-45
cd11517 576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 1e-40
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 2e-38
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 3e-38
cd11521 589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 8e-36
cd11522 580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 6e-35
cd11516 581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 2e-34
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 6e-32
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 4e-30
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 3e-23
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 3e-21
cd11517 576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 6e-21
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 4e-20
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 1e-19
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 4e-17
cd11516 581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 1e-16
cd11521 589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 9e-15
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 1e-13
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 2e-13
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 3e-13
cd06857413 cd06857, SLC5-6-like_sbd, Solute carrier families 7e-05
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  480 bits (1239), Expect = e-165
 Identities = 181/276 (65%), Positives = 223/276 (80%), Gaps = 2/276 (0%)

Query: 267 KRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA 326
           +RRVL I+DGI ++G +RWELA  LLL W+ICYFCIWKGVK TGKVVYFTA FPY +LI 
Sbjct: 161 ERRVLGISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLII 220

Query: 327 LLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFN 386
           LLIRG+TLPGA DGI +Y+ P+ +KL + +VWIDA TQIFFSYG+GLG+L ALGSYNKFN
Sbjct: 221 LLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFN 280

Query: 387 NNVYKDAMLVCAINSSTSMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVL 446
           NN YKD++++C +NS TS FAGF IFS++GFMA EQ  P+ EVA SGPGLAF+AYP AV 
Sbjct: 281 NNCYKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVS 340

Query: 447 QLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPHLLRR--RKELFVLVVCVVS 504
            LP   +W+ LFFIMLL LGLDSQF  VEGF+TA+VD +P++LR   R+E+FV +VC+V 
Sbjct: 341 LLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVC 400

Query: 505 FLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE 540
           FLIG   + +GG+Y+FQ+FD YA SG  LL+L FFE
Sbjct: 401 FLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFE 436

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
KOG3660|consensus 629 100.0
KOG3659|consensus 629 100.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 100.0
COG0733439 Na+-dependent transporters of the SNF family [Gene 100.0
KOG3659|consensus629 99.45
COG0733439 Na+-dependent transporters of the SNF family [Gene 99.37
KOG3660|consensus629 99.19
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 98.94
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 92.85
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 87.37
PRK15433439 branched-chain amino acid transport system 2 carri 85.4
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 84.39
PRK11375484 allantoin permease; Provisional 83.67
>KOG3660|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-93  Score=784.30  Aligned_cols=433  Identities=55%  Similarity=1.032  Sum_probs=404.3

Q ss_pred             cccccccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-e
Q psy1706          15 ILNLELNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVF-K   90 (540)
Q Consensus        15 ~~~~~r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~-~   90 (540)
                      +-+++|++|++   ++++|+|.+||+||+|||||+|+|||||||+|||+++++++|+|+++||+++||++++|++.+| |
T Consensus        29 ~~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrr  108 (629)
T KOG3660|consen   29 DAEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRR  108 (629)
T ss_pred             ccccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHH
Confidence            33458999999   6899999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             ecccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccchh
Q psy1706          91 IAPIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEMY  170 (540)
Q Consensus        91 ~~p~~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  170 (540)
                      ++|++||+|+++++++..+++||++++||+++|+++||++++||++|+|+||+++|.+..++..|++.....        
T Consensus       109 i~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~--------  180 (629)
T KOG3660|consen  109 ICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLS--------  180 (629)
T ss_pred             hChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCcccccccccccccccccc--------
Confidence            999999999999999999999999999999999999999999999999999999998876665554332210        


Q ss_pred             hhccccCccccccCCcHHHHHHHhhhhccCC--CCCCchhhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHHHH
Q psy1706         171 CYINQKNVSTRVLTDPVKEFWERRVLQITDG--INNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFL  248 (540)
Q Consensus       171 c~~~~~~~~~~~~~~~~~~f~~~~vl~~s~~--~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~~~  248 (540)
                              +..+..++..+++.+.+...++.  +++.|.++|++++|+.++|++++++++||+|++||++|+++++|+++
T Consensus       181 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyvi  252 (629)
T KOG3660|consen  181 --------NALNFNSPVAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVI  252 (629)
T ss_pred             --------chhhhccchhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHH
Confidence                    11134567789999988888764  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHHHH
Q psy1706         249 LIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIALL  328 (540)
Q Consensus       249 l~~l~i~~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~~~  328 (540)
                      ++++.+|++|||||.+|++++++|                                                        
T Consensus       253 L~iLliRgvTL~Ga~~Gi~~~l~~--------------------------------------------------------  276 (629)
T KOG3660|consen  253 LIVLLIRGVTLPGAGDGINFYLTP--------------------------------------------------------  276 (629)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHhh--------------------------------------------------------
Confidence            999999999999999999998754                                                        


Q ss_pred             HhhcCCCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHHHHH
Q psy1706         329 IRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFAG  408 (540)
Q Consensus       329 ~~~~~l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~l~g  408 (540)
                                         ||+++.++++|.||+.|+||+++++.|.+++++||+|.++|+.||+.+++..|+..|+++|
T Consensus       277 -------------------~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g  337 (629)
T KOG3660|consen  277 -------------------DWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAG  337 (629)
T ss_pred             -------------------hhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHH
Confidence                               4677789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCC-CcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc
Q psy1706         409 FVIFSVIGFMAHEQRR-PVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEWPH  487 (540)
Q Consensus       409 l~ifs~lg~~~~~~g~-~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f~~  487 (540)
                      +++||++||++++.|. +.++++++|++++|++|||++++||.+.+|+.|||.|++++|++|+++.+|++++++.|+|| 
T Consensus       338 ~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp-  416 (629)
T KOG3660|consen  338 FAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFP-  416 (629)
T ss_pred             HHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-
Confidence            9999999999999999 88889999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ccccchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706         488 LLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE  540 (540)
Q Consensus       488 ~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~e  540 (540)
                      .+|.+|+..+..+|++++++|+++++++|.|+++++|+|+++ +.+++++++|
T Consensus       417 ~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~-~~~~~~~~~e  468 (629)
T KOG3660|consen  417 RLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAAS-WSLLFIAIFE  468 (629)
T ss_pred             cccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhch-HHHHHHHHHH
Confidence            677888899999999999999999999999999999999997 9999999877

>KOG3659|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG3659|consensus Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG3660|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 1e-07
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 5e-07
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 1e-07
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 5e-07
4fxz_A513 Crystal Structure Of Leut-F253a Bound To L-Leucine 1e-07
4fxz_A513 Crystal Structure Of Leut-F253a Bound To L-Leucine 4e-06
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 1e-07
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 4e-07
3qs6_A519 Crystal Structure Of Leut Mutant F259v,I359q Bound 1e-07
3qs6_A519 Crystal Structure Of Leut Mutant F259v,I359q Bound 3e-07
3qs4_A519 Crystal Structure Of Leut Mutant F259v Bound To Sod 1e-07
3qs4_A519 Crystal Structure Of Leut Mutant F259v Bound To Sod 3e-07
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 1e-07
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 4e-07
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 1e-07
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 2e-07
3tt3_A519 Crystal Structure Of Leut In The Inward-Open Confor 1e-07
3tt3_A519 Crystal Structure Of Leut In The Inward-Open Confor 3e-06
3mpn_A507 F177r1 Mutant Of Leut Length = 507 1e-07
3mpn_A507 F177r1 Mutant Of Leut Length = 507 4e-07
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 1e-07
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 3e-07
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 1e-07
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 5e-07
3mpq_A507 I204r1 Mutant Of Leut Length = 507 1e-07
3mpq_A507 I204r1 Mutant Of Leut Length = 507 7e-07
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 1e-07
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 4e-07
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 2e-07
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 3e-07
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 Back     alignment and structure
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 7e-42
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 1e-24
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure
 Score =  156 bits (396), Expect = 7e-42
 Identities = 64/318 (20%), Positives = 109/318 (34%), Gaps = 19/318 (5%)

Query: 233 WTGKVVYFTALFPYFLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLL 292
           WT        +              ++           + +  G   +           L
Sbjct: 114 WTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFL 173

Query: 293 LVWVICYFCIWKGV-KWTGKVVYFTALFPYFLLIALLIRGITLP----GAIDGIKYYIIP 347
           +   I    + +G+ K   +         + L + L+IR   L      A DG+ +   P
Sbjct: 174 ITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTP 233

Query: 348 NFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSMFA 407
           +F KL +  VWI AV QIFF+  LG G ++   SY + + ++    +    +N    +  
Sbjct: 234 DFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVIL 293

Query: 408 GFVI--FSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFL 465
           G  I   + + F        + +       L F+  P+   Q  G      L+F +L F 
Sbjct: 294 GGSISIPAAVAFFGVANAVAIAK--AGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFA 351

Query: 466 GLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFD- 524
           GL S    ++  I  + DE    L R+    VL    + F    + +F          D 
Sbjct: 352 GLTSSIAIMQPMIAFLEDELK--LSRKH--AVLWTAAIVFFSAHLVMF--LNKSLDEMDF 405

Query: 525 ---SYAVSGFSLLFLMFF 539
              +  V  F L  L+ F
Sbjct: 406 WAGTIGVVFFGLTELIIF 423
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 100.0
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 99.5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
Probab=100.00  E-value=1.8e-84  Score=704.84  Aligned_cols=398  Identities=24%  Similarity=0.407  Sum_probs=363.4

Q ss_pred             cccccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHH----hcCCCccccc
Q psy1706          17 NLELNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQ----MLSVGGLGVF   89 (540)
Q Consensus        17 ~~~r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq----~~~~g~~~~~   89 (540)
                      +.||++|++   +++||+|+||||||+|||||+|+|||||||++||+++++++|+|++++|+++||    ++|+|++++|
T Consensus         2 ~~~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~   81 (519)
T 2a65_A            2 EVKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIF   81 (519)
T ss_dssp             ---CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHH
T ss_pred             CcccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHH
Confidence            457999998   689999999999999999999999999999999999999999999999999999    8888999999


Q ss_pred             -eeccc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCccCCCCCCCccCCcccccccccccccccc
Q psy1706          90 -KIAPI--FKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVP--WRNCNNFWNTKNCVNPYERVGLKCWNATSTL  164 (540)
Q Consensus        90 -~~~p~--~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lp--W~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~  164 (540)
                       |++|.  |||+|+++++.++++++||+++++|+++|+++|+++++|  |.+|.      +|                  
T Consensus        82 ~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~------~~------------------  137 (519)
T 2a65_A           82 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT------DP------------------  137 (519)
T ss_dssp             HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C------CH------------------
T ss_pred             HHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC------Cc------------------
Confidence             78876  999999999999999999999999999999999999999  54321      00                  


Q ss_pred             cccchhhhccccCccccccCCcHHHHHHHhhhhccCCCCCCchhhHHHHHHHHHHHHHHhhhhcccc-cccceEEEecch
Q psy1706         165 YSKEMYCYINQKNVSTRVLTDPVKEFWERRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGV-KWTGKVVYFTAL  243 (540)
Q Consensus       165 ~~~~~~c~~~~~~~~~~~~~~~~~~f~~~~vl~~s~~~~~~g~~~~~l~~~~~~~w~~~~~~~~~Gi-~~~gkv~~~~~~  243 (540)
                           +|           ..+|.++||++ +++.++++++.|+++|+++++++++|++++.++.||+ |.++|+.+++++
T Consensus       138 -----~~-----------~~~~~~~~f~~-~l~~~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp  200 (519)
T 2a65_A          138 -----DS-----------ILRPFKEFLYS-YIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP  200 (519)
T ss_dssp             -----HH-----------HHHHHHHHHHH-HHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             -----cc-----------ccCcHHHHHHH-HHCCCCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence                 00           01355677765 6788889999999999999999999999999999999 569999999999


Q ss_pred             hHHHHHHHHHHHHccccC----hhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhH
Q psy1706         244 FPYFLLIALLIRGITLPG----AIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALF  319 (540)
Q Consensus       244 ~p~~~l~~l~i~~ltl~g----a~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l  319 (540)
                      +|+++++++++|++||||    |.||++|+++                                                
T Consensus       201 ~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~------------------------------------------------  232 (519)
T 2a65_A          201 TLFILAVFLVIRVFLLETPNGTAADGLNFLWT------------------------------------------------  232 (519)
T ss_dssp             HHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc------------------------------------------------
Confidence            999999999999999999    9999998874                                                


Q ss_pred             HHHHHHHHHHhhcCCCCccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHH
Q psy1706         320 PYFLLIALLIRGITLPGAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAI  399 (540)
Q Consensus       320 ~~~~i~~~~~~~~~l~gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~  399 (540)
                                                 |||+++.++++|.+|++|+||++++|.|.+++++||+++++|+.||+..++..
T Consensus       233 ---------------------------Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~  285 (519)
T 2a65_A          233 ---------------------------PDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATL  285 (519)
T ss_dssp             ---------------------------CCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHH
T ss_pred             ---------------------------CCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHH
Confidence                                       45677777899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCC-cccccccC-ccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy1706         400 NSSTSMFAGFVIFSVIGFMAHEQRRP-VEEVATSG-PGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGF  477 (540)
Q Consensus       400 ~~~~s~l~gl~ifs~lg~~~~~~g~~-~~~~~~~g-~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~i  477 (540)
                      |+.+++++|+.+|+.+||++  .|.+ +.|++++| ++|+|+++|+++++||++++|+++||++++++|++|+++++|++
T Consensus       286 n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~  363 (519)
T 2a65_A          286 NEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPM  363 (519)
T ss_dssp             HHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence            99999999999999999987  4666 66677889 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhcC-cchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706         478 ITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQG-GMYIFQIFDSYAVSGFSLLFLMFFE  540 (540)
Q Consensus       478 v~~l~d~f~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~-G~~~~~~~d~~~~~~~~l~~~~~~e  540 (540)
                      ++.++|+++    ++|++++.++|++++++|+|+++++ |   +|++|+++++ +.+++.+++|
T Consensus       364 vt~l~D~~~----~~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~-~~l~~~~l~~  419 (519)
T 2a65_A          364 IAFLEDELK----LSRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGT-IGVVFFGLTE  419 (519)
T ss_dssp             HHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTT-HHHHHHHHHH
T ss_pred             HHHHHHhhC----CcHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhH-HHHHHHHHHH
Confidence            999999997    7899999999999999999999998 8   9999999985 9999998876
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 540
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 7e-29
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 7e-28
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  117 bits (295), Expect = 7e-29
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 8/257 (3%)

Query: 285 WELAATLLLVWVICYFCIWKGVKWTGKVVYFTALF-PYFLLIALLIRGITLPGAIDGIKY 343
                T+ +   I    I KG++   K+   T      FL+I + +       A DG+ +
Sbjct: 166 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNF 225

Query: 344 YIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSST 403
              P+F KL +  VWI AV QIFF+  LG G ++   SY + + ++    +    +N   
Sbjct: 226 LWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKA 285

Query: 404 SMFAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLL 463
            +  G  I              V         L F+  P+   Q  G      L+F +L 
Sbjct: 286 EVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLF 345

Query: 464 FLGLDSQFCTVEGFITAMVDEWPHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIF 523
           F GL S    ++  I  + DE       RK   +    +V F    V      +     +
Sbjct: 346 FAGLTSSIAIMQPMIAFLEDELK---LSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFW 402

Query: 524 DSYAVSGFSLLFLMFFE 540
                    ++F    E
Sbjct: 403 ----AGTIGVVFFGLTE 415
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 100.0
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 98.83
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=4.3e-71  Score=601.98  Aligned_cols=401  Identities=25%  Similarity=0.397  Sum_probs=327.1

Q ss_pred             ccccCC---chhhhhhhhhccccccccchhhhhccceehhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccce-e----
Q psy1706          20 LNQYGG---TSPTKPRLAIGLGNVWRFPYLCYKNGGGAFLVPYLLTAILAGMPMFFMELALGQMLSVGGLGVFK-I----   91 (540)
Q Consensus        20 r~~~~~---~~~~~~g~avGlgniwrFP~l~~~~GGgaFlipY~i~l~~~g~Pll~lE~~lGq~~~~g~~~~~~-~----   91 (540)
                      ||+|++   +++|++|+|||+||+|||||+|+|||||+|++||+++++++|+|++++|+++||++|+|++++|| +    
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~   80 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence            899999   57999999999999999999999999999999999999999999999999999999999999994 3    


Q ss_pred             --cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCccCCcccccccccccccccccccch
Q psy1706          92 --APIFKGVGYAAAVMSCWMNIYYIVILAWAVFYFFMSLRTDVPWRNCNNFWNTKNCVNPYERVGLKCWNATSTLYSKEM  169 (540)
Q Consensus        92 --~p~~~GiG~~~~~~~~~i~~yY~vi~aw~l~Y~~~s~~~~lpW~~C~~~w~~~~c~~~~~~~~~~~~~~~~~~~~~~~  169 (540)
                        +|++||+|++++++++++++||+++.+|+++|+++++++++||+.|++.+++ +                        
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~-~------------------------  135 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPD-S------------------------  135 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHH-H------------------------
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCcc-c------------------------
Confidence              6889999999999999999999999999999999999999999988653221 1                        


Q ss_pred             hhhccccCccccccCCcHHHHHHHhhhhcc--CCCCCCch-hhHHHHHHHHHHHHHHhhhhcccccccceEEEecchhHH
Q psy1706         170 YCYINQKNVSTRVLTDPVKEFWERRVLQIT--DGINNLGG-VRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPY  246 (540)
Q Consensus       170 ~c~~~~~~~~~~~~~~~~~~f~~~~vl~~s--~~~~~~g~-~~~~l~~~~~~~w~~~~~~~~~Gi~~~gkv~~~~~~~p~  246 (540)
                                   ..+|.+||+++.+....  ++..+... ....+++++.++|.++++++.||+|+++|+++.+...|.
T Consensus       136 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~  202 (509)
T d2a65a1         136 -------------ILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILA  202 (509)
T ss_dssp             -------------HHHHHHHHHHHHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHH
T ss_pred             -------------cccchHHHHHhhhccccCCCccccchHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHH
Confidence                         11345677776654432  22222222 234455678899999999999999999998643322222


Q ss_pred             HHHHHHHHHHccccChhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCcccchhhHHHHhhHHHHHHHH
Q psy1706         247 FLLIALLIRGITLPGAIDGIKRRVLQITDGINNLGGVRWELAATLLLVWVICYFCIWKGVKWTGKVVYFTALFPYFLLIA  326 (540)
Q Consensus       247 ~~l~~l~i~~ltl~ga~~G~~~~~~p~~~d~~~l~~~~w~~A~gq~fslsi~~g~i~~~~~~~~~~~~~~~~l~~~~i~~  326 (540)
                         ++++++.++++                                                                  
T Consensus       203 ---~~l~i~~~~l~------------------------------------------------------------------  213 (509)
T d2a65a1         203 ---VFLVIRVFLLE------------------------------------------------------------------  213 (509)
T ss_dssp             ---HHHHHHHTTCE------------------------------------------------------------------
T ss_pred             ---HHHHHHhhhcc------------------------------------------------------------------
Confidence               22334444443                                                                  


Q ss_pred             HHHhhcCCC-CccccceeEeecCCCCCCcchHHHHHHHHHHHHHHhHHHHHHhhhccccccCccccchhhHHHHHHHHHH
Q psy1706         327 LLIRGITLP-GAIDGIKYYIIPNFSKLGESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFNNNVYKDAMLVCAINSSTSM  405 (540)
Q Consensus       327 ~~~~~~~l~-gag~gL~f~~~P~f~~l~~~~vw~~A~~~~fF~l~~g~G~~~~~~Sy~~~~~~~~r~a~~~~~~~~~~s~  405 (540)
                            +.+ ++.+|+.|++.||++++.++++|.+|++|+||++++|.|.+++++||+++++|..||+..++..|+.+++
T Consensus       214 ------~~~gga~~gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si  287 (509)
T d2a65a1         214 ------TPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEV  287 (509)
T ss_dssp             ------ETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             ------cCCCcHHHHhhhccCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEecccceee
Confidence                  111 2344445555677888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCcccccccCccchhhhHHHHhccCCChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q psy1706         406 FAGFVIFSVIGFMAHEQRRPVEEVATSGPGLAFLAYPSAVLQLPGAPIWSCLFFIMLLFLGLDSQFCTVEGFITAMVDEW  485 (540)
Q Consensus       406 l~gl~ifs~lg~~~~~~g~~~~~~~~~g~~l~Fv~~p~~~~~~p~~~~~~~lfF~~l~~~gl~s~i~~~E~iv~~l~d~f  485 (540)
                      +++..++...++.......+.++...+|+++.|+++||++++||.+++|+++||++++++|++|+++++|++++.++|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~  367 (509)
T d2a65a1         288 ILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL  367 (509)
T ss_dssp             TTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccchhhhhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHhc
Confidence            99887777766654433333333445799999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHhhhhhcCcchHHHHHHHHhhhhhhhhhhhhcC
Q psy1706         486 PHLLRRRKELFVLVVCVVSFLIGFVCIFQGGMYIFQIFDSYAVSGFSLLFLMFFE  540 (540)
Q Consensus       486 ~~~~~~~r~~~~~~~~~~~~l~gl~~~~~~G~~~~~~~d~~~~~~~~l~~~~~~e  540 (540)
                      +.   .||+.....+|++.++.++++++++|   ++++|++.++ +.+++++++|
T Consensus       368 ~~---~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~-~~l~~~~l~e  415 (509)
T d2a65a1         368 KL---SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGT-IGVVFFGLTE  415 (509)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTT-HHHHHHHHHH
T ss_pred             CC---chhhhhhheeEEEEhhhhHHHHhcch---HHHHHHHHHH-HHHHHHHHHH
Confidence            82   33445566788888999999998887   6788999985 9999988876
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure