Psyllid ID: psy17079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPIVDKGTCNCLWSYRAEIEAEKETG
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccHHEEHHHEHEHHccc
Coil and Loop (DISEMBL)
mqsncwygvditkedisdnmescvwepAIVKKNAITAASEAACLVLSvdetiknpkaggeggqgmpmpgrgrgrpivdkgtcNCLWSYRAEIEAEKETG
Flexible Loop (DISEMBL)
mqsncwygvditkedisdnMESCVWEPAIVKKNAITAASEAACLVLSVDETiknpkaggeggqgmpmpgrgRGRPIVDKGTCNCLWSYRAEIEAEKETG
Low Complexity Region (SEG)
MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAggeggqgmpmpgrgrgrpIVDKGTCNCLWSYRAEIEAEKETG
Disordered region (IsUnstruct)
****CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDET************************IVDKGTCNCLWSYRAE********
Disordered Region (DISOPRED)
**SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVD******************************GTCNCLWSYRAEIE******
Disordered Region (DISEMBL)
MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPIVDKGTCNCLWSYRAEIEAEKETG
Disordered Region (DISPRO)
**SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP**********************DKGTCNCLWSYRAEIEAEK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPIVDKGTCNCLWSYRAEIEAEKETG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q5ZJK8	553	T-complex protein 1 subun	yes	N/A	0.565	0.101	0.714	4e-19
P80313	544	T-complex protein 1 subun	yes	N/A	0.696	0.126	0.589	6e-19
Q5R5C8	543	T-complex protein 1 subun	yes	N/A	0.565	0.103	0.696	2e-18
Q99832	543	T-complex protein 1 subun	no	N/A	0.565	0.103	0.696	3e-18
Q2NKZ1	543	T-complex protein 1 subun	yes	N/A	0.565	0.103	0.696	4e-18
Q54ER7	555	T-complex protein 1 subun	yes	N/A	0.707	0.126	0.487	8e-14
P87153	558	Probable T-complex protei	yes	N/A	0.696	0.123	0.526	1e-13
P42943	550	T-complex protein 1 subun	yes	N/A	0.696	0.125	0.52	2e-13
P54409	558	T-complex protein 1 subun	N/A	N/A	0.666	0.118	0.514	6e-12
O77323	539	T-complex protein 1 subun	yes	N/A	0.636	0.116	0.484	1e-11

>sp|Q5ZJK8|TCPH_CHICK T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 49/56 (87%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
           Q   WYGVD+  EDI+DN E+CVWEPAIV+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 525

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Gallus gallus (taxid: 9031)

>sp|P80313|TCPH_MOUSE T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 4/73 (5%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q   WYGVDI  E+I+DN ++ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++  + 
Sbjct: 470 QGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDP 529

Query: 62  GQGMPMPGRGRGR 74
               P P  GRGR
Sbjct: 530 ----PAPSAGRGR 538

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Mus musculus (taxid: 10090)

>sp|Q5R5C8|TCPH_PONAB T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
           Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Pongo abelii (taxid: 9601)

>sp|Q99832|TCPH_HUMAN T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
           Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|Q2NKZ1|TCPH_BOVIN T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
           Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Bos taurus (taxid: 9913)

>sp|Q54ER7|TCPH_DICDI T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 10/80 (12%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q   W+GVDI  E I D  ES +WEP++VK N+I AA+EA CL+LSVDET++N +A  E 
Sbjct: 470 QGEKWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQNNQA--EQ 527

Query: 62  GQGMPMP--------GRGRG 73
            Q  P           RGRG
Sbjct: 528 AQAGPQINNQTRQALSRGRG 547

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Dictyostelium discoideum (taxid: 44689)

>sp|P87153|TCPH_SCHPO Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct7 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 7/76 (9%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN-PKAGGEGGQG 64
           W GVD+  E +++N E  VWEP+ VK NAI +A+EAA L+LSVDETIKN P    +  QG
Sbjct: 479 WAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQQPQAPQG 538

Query: 65  MPMPG------RGRGR 74
              PG      RGRGR
Sbjct: 539 ALPPGAANRIMRGRGR 554

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P42943|TCPH_YEAST T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT7 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
           WYGV    E+I DN    VWEPA+VK NA+ +A+EA  L+LSVDETI N   G E     
Sbjct: 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNK--GSESANAG 535

Query: 66  PMP----GRGRGRPI 76
            MP    GRGRG P+
Sbjct: 536 MMPPQGAGRGRGMPM 550

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. In yeast may play a role in mitotic spindle formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P54409|TCPH_TETPY T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 7   YGVDITKED-ISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
           +GVDI   D I +N E+ VWEP IV+KNA +AA+EAAC +LS+DET++NPK+        
Sbjct: 478 FGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETVRNPKSEQPKA--- 534

Query: 66  PMPGRGRGRP 75
           P  G  RG P
Sbjct: 535 PPGGLRRGGP 544

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Tetrahymena pyriformis (taxid: 5908)

>sp|O77323|TCPH_PLAF7 T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P3.6 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 3   SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGG 62
           S+ WYGVD  + DI +  ++C++E   +K+N I +A+EAACL+LS+DETIKNP +   G 
Sbjct: 475 SDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIKNPSSAA-GT 533

Query: 63  QGMP 66
           Q  P
Sbjct: 534 QRSP 537

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
242003180	543	T-complex protein 1 subunit eta, putativ	0.737	0.134	0.746	6e-24
16611916	541	chaperonin subunit 1 [Artemia franciscan	0.747	0.136	0.693	2e-23
218749822	541	chaperonin containing TCP1, subunit 7 [N	0.707	0.129	0.722	9e-23
91093052	540	PREDICTED: similar to chaperonin [Tribol	0.717	0.131	0.68	1e-22
147904655	480	uncharacterized protein LOC495278 [Xenop	0.707	0.145	0.675	3e-22
27769226	561	LOC495278 protein, partial [Xenopus laev	0.707	0.124	0.675	4e-22
332020744	554	T-complex protein 1 subunit eta [Acromyr	0.696	0.124	0.690	4e-22
307165869	544	T-complex protein 1 subunit eta [Campono	0.676	0.123	0.690	8e-22
291229965	575	PREDICTED: chaperonin containing TCP1, s	0.717	0.123	0.68	1e-21
307197838	496	T-complex protein 1 subunit eta [Harpegn	0.676	0.135	0.690	1e-21

>gi|242003180|ref|XP_002422641.1| T-complex protein 1 subunit eta, putative [Pediculus humanus corporis] gi|212505442|gb|EEB09903.1| T-complex protein 1 subunit eta, putative [Pediculus humanus corporis]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 61/75 (81%), Gaps = 2/75 (2%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA-GGE 60
           Q   WYGVDI KEDISDN E CVWEPA+VK NAITAASEAACL+LSVDETIKN K+ GG+
Sbjct: 469 QGFTWYGVDINKEDISDNFEQCVWEPAVVKINAITAASEAACLILSVDETIKNVKSGGGD 528

Query: 61  GGQGMPMPGRGRGRP 75
               +PM GRGRGRP
Sbjct: 529 APSALPM-GRGRGRP 542

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16611916|gb|AAL27405.1|AF427597_1 chaperonin subunit 1 [Artemia franciscana]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 61/75 (81%), Gaps = 1/75 (1%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q + WYGVDI  EDI+DN   CVWEP++VK NA+TAASEAACL+LSVDET+KNPK+GG  
Sbjct: 468 QGHKWYGVDIMNEDIADNFHECVWEPSLVKINALTAASEAACLILSVDETVKNPKSGGGD 527

Query: 62  GQGMPMPGRGRGRPI 76
             GMP  GRGRGRP+
Sbjct: 528 MGGMP-AGRGRGRPM 541

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|218749822|ref|NP_001136327.1| chaperonin containing TCP1, subunit 7 [Nasonia vitripennis]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 60/72 (83%), Gaps = 2/72 (2%)

Query: 5   CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQG 64
           CW+GVDI  EDI+DN ESCVWEPA+VK NA+TAA EAACL+LSVDETIK+PK+G  GG  
Sbjct: 472 CWFGVDINNEDIADNWESCVWEPAVVKINALTAACEAACLILSVDETIKSPKSG--GGDA 529

Query: 65  MPMPGRGRGRPI 76
             MPGRG GRP+
Sbjct: 530 PQMPGRGMGRPM 541

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093052|ref|XP_967459.1| PREDICTED: similar to chaperonin [Tribolium castaneum] gi|270002664|gb|EEZ99111.1| hypothetical protein TcasGA2_TC005004 [Tribolium castaneum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 58/75 (77%), Gaps = 4/75 (5%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q +CWYGVDI KEDISDN E+CVWEPAIVK NA+TAA+E  CL+LSVDETIKN K+    
Sbjct: 470 QGHCWYGVDINKEDISDNFEACVWEPAIVKANALTAATETTCLILSVDETIKNQKS---- 525

Query: 62  GQGMPMPGRGRGRPI 76
           G   P  GRG GRP+
Sbjct: 526 GDAQPQMGRGMGRPM 540

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147904655|ref|NP_001088419.1| uncharacterized protein LOC495278 [Xenopus laevis] gi|54261482|gb|AAH84429.1| LOC495278 protein [Xenopus laevis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/74 (67%), Positives = 58/74 (78%), Gaps = 4/74 (5%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q   W+GVDI  EDI+DN E+CVWEPAIVK NA+TAASEAACL+LSVDETIKNP++  +G
Sbjct: 408 QGGMWFGVDINNEDIADNFEACVWEPAIVKINALTAASEAACLILSVDETIKNPRSSADG 467

Query: 62  GQGMPMPGRGRGRP 75
                  GRGRGRP
Sbjct: 468 APA----GRGRGRP 477

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|27769226|gb|AAH42312.1| LOC495278 protein, partial [Xenopus laevis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 58/74 (78%), Gaps = 4/74 (5%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           Q   W+GVDI  EDI+DN E+CVWEPAIVK NA+TAASEAACL+LSVDETIKNP++  +G
Sbjct: 489 QGGMWFGVDINNEDIADNFEACVWEPAIVKINALTAASEAACLILSVDETIKNPRSSADG 548

Query: 62  GQGMPMPGRGRGRP 75
                  GRGRGRP
Sbjct: 549 APA----GRGRGRP 558

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332020744|gb|EGI61148.1| T-complex protein 1 subunit eta [Acromyrmex echinatior]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 59/71 (83%), Gaps = 2/71 (2%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
           WYGVDI  EDI+DNM+ CVWEPAIVK NA+TAA+EAACL+LSVDETI+NP++  +G Q  
Sbjct: 486 WYGVDINSEDITDNMQYCVWEPAIVKINALTAATEAACLILSVDETIRNPRSSQDGPQ-- 543

Query: 66  PMPGRGRGRPI 76
           P  GRG GRP+
Sbjct: 544 PPMGRGMGRPM 554

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307165869|gb|EFN60224.1| T-complex protein 1 subunit eta [Camponotus floridanus]

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 58/71 (81%), Gaps = 4/71 (5%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
           WYGVDI  EDI+DNM+ CVWEPAIVK NA+TAA+EAACL+LSVDETIKNP++  +G    
Sbjct: 478 WYGVDINTEDIADNMQCCVWEPAIVKINALTAATEAACLILSVDETIKNPRSSQDG---- 533

Query: 66  PMPGRGRGRPI 76
           P  GRG GRP+
Sbjct: 534 PPAGRGMGRPM 544

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291229965|ref|XP_002734944.1| PREDICTED: chaperonin containing TCP1, subunit 7-like [Saccoglossus kowalevskii]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 58/75 (77%), Gaps = 4/75 (5%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60
            Q   WYGVDI  EDI+DN+ +CVWEPAIVK NAITAASEAACL+LSVDET+KNP++GG 
Sbjct: 504 FQGEMWYGVDINNEDIADNLVACVWEPAIVKMNAITAASEAACLILSVDETVKNPQSGG- 562

Query: 61  GGQGMPMPGRGRGRP 75
                   GRGRGRP
Sbjct: 563 ---NQQPRGRGRGRP 574

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|307197838|gb|EFN78949.1| T-complex protein 1 subunit eta [Harpegnathos saltator]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 57/71 (80%), Gaps = 4/71 (5%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
           WYGVDI  EDI+DNM+ CVWEPA+VK NA+TAA+EAACL+LSVDETIKNPK+     Q  
Sbjct: 430 WYGVDINSEDIADNMQDCVWEPAVVKINALTAATEAACLILSVDETIKNPKS----TQDA 485

Query: 66  PMPGRGRGRPI 76
           P  GRG GRP+
Sbjct: 486 PPMGRGMGRPM 496

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
FB|FBgn0037632	544	Tcp-1eta "Tcp-1eta" [Drosophil	0.565	0.102	0.75	1e-18
UNIPROTKB|F1NZN1	520	F1NZN1 "Uncharacterized protei	0.565	0.107	0.714	2e-18
UNIPROTKB|F1NK38	539	F1NK38 "Uncharacterized protei	0.565	0.103	0.714	2.1e-18
UNIPROTKB|Q5ZJK8	553	CCT7 "T-complex protein 1 subu	0.565	0.101	0.714	2.3e-18
ZFIN|ZDB-GENE-020419-7	547	cct7 "chaperonin containing TC	0.565	0.102	0.696	4.7e-18
UNIPROTKB|B7Z1C9	415	CCT7 "Chaperonin containing TC	0.565	0.134	0.696	2.7e-17
UNIPROTKB|F5GZK5	443	CCT7 "T-complex protein 1 subu	0.565	0.126	0.696	3.3e-17
UNIPROTKB|B8ZZC9	501	CCT7 "T-complex protein 1 subu	0.565	0.111	0.696	4.6e-17
UNIPROTKB|E2QZM2	487	E2QZM2 "Uncharacterized protei	0.565	0.114	0.678	5.5e-17
UNIPROTKB|Q99832	543	CCT7 "T-complex protein 1 subu	0.565	0.103	0.696	5.6e-17

FB|FBgn0037632 Tcp-1eta "Tcp-1eta" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 42/56 (75%), Positives = 49/56 (87%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVDI KEDISDN E CVWEP+I+K NA+TAA+EAAC++LSVDETIK+PKA
Sbjct:   469 QGGQWYGVDINKEDISDNYEQCVWEPSIIKINALTAAAEAACMILSVDETIKSPKA 524

GO:0006457 "protein folding" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0005832 "chaperonin-containing T-complex" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NZN1 F1NZN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 40/56 (71%), Positives = 49/56 (87%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVD+  EDI+DN E+CVWEPAIV+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   446 QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 501

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NK38 F1NK38 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 40/56 (71%), Positives = 49/56 (87%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVD+  EDI+DN E+CVWEPAIV+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   457 QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 512

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5ZJK8 CCT7 "T-complex protein 1 subunit eta" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 40/56 (71%), Positives = 49/56 (87%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVD+  EDI+DN E+CVWEPAIV+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   470 QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 525

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-020419-7 cct7 "chaperonin containing TCP1, subunit 7 (eta)" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 39/56 (69%), Positives = 49/56 (87%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVD+  EDI+DN ++CVWEP+IV+ NA+TAASEAACL+LSVDETIKNP++
Sbjct:   470 QGGMWYGVDVNNEDIADNFQACVWEPSIVRINALTAASEAACLILSVDETIKNPRS 525

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B7Z1C9 CCT7 "Chaperonin containing TCP1, subunit 7 (Eta), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   342 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 397

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F5GZK5 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   370 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 425

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|B8ZZC9 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   428 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 483

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2QZM2 E2QZM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVD+  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   410 QGGMWYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 465

GO:0005737 "cytoplasm" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q99832 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 5.6e-17, P = 5.6e-17
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query:     2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
             Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct:   470 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZJK8	TCPH_CHICK	No assigned EC number	0.7142	0.5656	0.1012	yes	N/A
P42943	TCPH_YEAST	No assigned EC number	0.52	0.6969	0.1254	yes	N/A
Q5R5C8	TCPH_PONAB	No assigned EC number	0.6964	0.5656	0.1031	yes	N/A
Q2NKZ1	TCPH_BOVIN	No assigned EC number	0.6964	0.5656	0.1031	yes	N/A
P80313	TCPH_MOUSE	No assigned EC number	0.5890	0.6969	0.1268	yes	N/A
P87153	TCPH_SCHPO	No assigned EC number	0.5263	0.6969	0.1236	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	1e-29
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	6e-23
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	3e-15
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	5e-13
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	6e-12
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	4e-11
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	1e-10
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	2e-08
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	2e-08
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	4e-08
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	7e-08
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	2e-07
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	5e-07
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	7e-07
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	1e-06
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	8e-05
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	2e-04
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	0.004

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score =  109 bits (275), Expect = 1e-29
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
                WYGVDI  E I+DN E+ VWEP++VK NA+TAA+EAACL+LSVDETIKNPK+
Sbjct: 466 QGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPKS 522

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score = 91.0 bits (226), Expect = 6e-23
 Identities = 37/56 (66%), Positives = 44/56 (78%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
           +   WYGVDI  EDI DN E+ VWEPA+VK NA+ AA+EAAC +LSVDETI NPK+
Sbjct: 468 KGGKWYGVDINTEDIGDNFENFVWEPALVKINALKAATEAACTILSVDETITNPKS 523

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 69.0 bits (170), Expect = 3e-15
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           +     G D+   +I D  E+ + +P  VK+ A+ +A+EAA L+L++D+ I 
Sbjct: 413 EGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 62.6 bits (153), Expect = 5e-13
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           +     G+D    +I D  E+ + +P  VK++A+ +A E A L+L++D+ IK
Sbjct: 427 KKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIK 478

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 2   QSNCWYGVDITKEDISDNM-ESCVWEPAIVKKNAITAASEAACLVLSVDETIKN-PKAGG 59
            +   YG+D    +  D+M E+ + +P  VK++A+  A+EAA L+L++D+ I   P+   
Sbjct: 460 HATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKK 519

Query: 60  EGGQG 64
               G
Sbjct: 520 PAPPG 524

Length = 524

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           N   G+++   +I D +E  V EP  VK+ AI +A+EAA ++L +D+ I
Sbjct: 469 NKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
             G+D+   ++ D +E  V EP  VKK AI +A+EAA ++L +D+ I 
Sbjct: 468 NAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NP 55
           +   WYG+D+    + DN+E+ V EP + K  ++  A+EAA  +L +D+ IK NP
Sbjct: 473 KHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           N  +G+D    DI D  E  +W+P  VK      A EAAC++L +D+ +
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK 56
           +   WYG+D++   I DN E+ V EPA+ K  ++  A+EAA  +L +D+ IK NP+
Sbjct: 477 KHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           NC +G+D     I D  E  +WEP  VK      A E+AC++L +D+ +
Sbjct: 471 NCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 7   YGVDITKEDIS--DNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
            GVDI   D    D  E+ +++    KK AI  A+EAA  VL VD+ I
Sbjct: 422 AGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
             N   G+D+ K  + D  E  + E   VK+  + +ASEAA ++L VD+ IK
Sbjct: 461 NGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIK 512

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 7   YGVDITKEDIS--DNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59
            G+DI  E     D  E+ +++    KK AI  A+EAA  VL VD+ I    AGG
Sbjct: 470 KGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQIIMAKPAGG 524

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
            + N   G+D+ K  + D  E  + E   VK + + +A+EAA ++L VD+ I+ 
Sbjct: 472 YKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRC 525

Length = 533

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           Q     G+++ K  I++ +E  V +P +V  +AIT A+E   ++L +D+ +
Sbjct: 463 QGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDE 50
                 G+ + K  I++ +E  V +P +V  +AIT ASE    +L +D+
Sbjct: 464 NGEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDD 512

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 8   GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           GVD+   +  D     +W+   VKK  I +A+  A  +L VDE ++
Sbjct: 479 GVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMR 524

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG0361|consensus	543		99.6
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.41
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.41
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	99.4
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	99.39
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.39
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	99.38
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.36
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	99.36
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	99.36
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	99.36
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	99.36
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	99.35
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	99.34
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	99.33
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.32
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	99.32
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	99.31
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	99.31
PRK14104	546	chaperonin GroEL; Provisional	99.3
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	99.29
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.28
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	99.28
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	99.27
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	99.26
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	99.25
KOG0363|consensus	527		99.25
CHL00093	529	groEL chaperonin GroEL	99.22
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	99.2
PTZ00114	555	Heat shock protein 60; Provisional	99.2
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	99.19
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	99.18
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	99.08
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.08
KOG0362|consensus	537		99.07
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	98.95
KOG0358|consensus	534		98.79
KOG0364|consensus	527		98.76
KOG0357|consensus	400		98.52
KOG0360|consensus	545		98.2
KOG0359|consensus	520		98.0
KOG0356|consensus	550		95.75

>KOG0361|consensus

Probab=99.60  E-value=8.4e-16  Score=126.32  Aligned_cols=74  Identities=65%  Similarity=1.008  Sum_probs=65.8

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCCCCCCCcc
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPI   76 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~~~~~~~~   76 (99)
                      +|..|||||++++.+.|+++.+||||..||.++|++|+|||++||+||++|++++++.+++.++.+ +.++|||+
T Consensus       470 ~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a~r-grg~g~p~  543 (543)
T KOG0361|consen  470 QGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSAAGR-GRGRGRPR  543 (543)
T ss_pred             cCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCcccc-CCCCCCCC
Confidence            588999999999999999999999999999999999999999999999999999988775554445 66667775

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.41  E-value=4.7e-13  Score=111.64  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPM   67 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~   67 (99)
                      .++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|+.++......+.+++
T Consensus       475 ~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~  537 (545)
T PRK12852        475 ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAG  537 (545)
T ss_pred             CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCC
Confidence            468999999999999999999999999999999999999999999999987665433333333

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.41  E-value=3.5e-13  Score=112.54  Aligned_cols=65  Identities=20%  Similarity=0.391  Sum_probs=57.3

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPG   69 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~   69 (99)
                      .++|+|+.+|.+.||.+.|||||+.||.++|++|+++|++||+||++|+.++.+.++..++|.|+
T Consensus       474 ~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~  538 (544)
T PRK12850        474 GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPG  538 (544)
T ss_pred             CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCC
Confidence            36899999999999999999999999999999999999999999999999887766555554433

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=99.40  E-value=2.2e-13  Score=112.63  Aligned_cols=53  Identities=36%  Similarity=0.616  Sum_probs=49.8

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      +.++|||+.+|.+.||++.|||||+.||.++|++|+|+|++|||||++|+++|
T Consensus       475 ~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~  527 (527)
T cd03335         475 LKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP  527 (527)
T ss_pred             CceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence            34789999999999999999999999999999999999999999999998754

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=99.39  E-value=3.6e-13  Score=112.05  Aligned_cols=55  Identities=27%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA   57 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~   57 (99)
                      |+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||++++.
T Consensus       474 ~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~  528 (531)
T TIGR02347       474 GGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS  528 (531)
T ss_pred             cCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence            4457899999999999999999999999999999999999999999999998765

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.39  E-value=6.2e-13  Score=111.01  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM   65 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~   65 (99)
                      .++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||++|++++.+.++.+..
T Consensus       474 ~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~  534 (541)
T PRK12851        474 GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAP  534 (541)
T ss_pred             CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCC
Confidence            3689999999999999999999999999999999999999999999999987766654433

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=99.38  E-value=4.3e-13  Score=110.18  Aligned_cols=53  Identities=26%  Similarity=0.361  Sum_probs=50.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      ++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus       431 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~  483 (484)
T cd03342         431 GGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG  483 (484)
T ss_pred             cCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence            45578999999999999999999999999999999999999999999999875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.36  E-value=1.3e-12  Score=109.22  Aligned_cols=61  Identities=20%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM   65 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~   65 (99)
                      .++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|.+++....++|+.
T Consensus       474 ~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~  534 (542)
T PRK00013        474 KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPM  534 (542)
T ss_pred             CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCC
Confidence            3689999999999999999999999999999999999999999999999877654444433

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=99.36  E-value=7.1e-13  Score=109.97  Aligned_cols=54  Identities=31%  Similarity=0.376  Sum_probs=50.9

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      ++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|..++
T Consensus       474 ~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~  527 (533)
T PTZ00212        474 GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP  527 (533)
T ss_pred             cCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence            456799999999999999999999999999999999999999999999998864

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=99.36  E-value=7.6e-13  Score=109.63  Aligned_cols=55  Identities=31%  Similarity=0.417  Sum_probs=51.6

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA   57 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~   57 (99)
                      |+.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+++|.
T Consensus       463 ~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~  517 (519)
T TIGR02341       463 GNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR  517 (519)
T ss_pred             CCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence            4557899999999999999999999999999999999999999999999998763

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=99.36  E-value=8.7e-13  Score=109.52  Aligned_cols=61  Identities=38%  Similarity=0.467  Sum_probs=54.1

Q ss_pred             CCceeeeeccCCc--cccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079          3 SNCWYGVDITKED--ISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ   63 (99)
Q Consensus         3 G~~~~GVdi~~G~--i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~   63 (99)
                      ++.++|+|+.+|.  +.||++.|||||+.||+++|++|+|+|++|||||++|..++...++.|
T Consensus       466 ~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~  528 (531)
T TIGR02346       466 GNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPP  528 (531)
T ss_pred             cCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCC
Confidence            4557899999999  599999999999999999999999999999999999998765555443

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=99.36  E-value=7.5e-13  Score=109.25  Aligned_cols=52  Identities=73%  Similarity=1.192  Sum_probs=49.8

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      .++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|++++
T Consensus       470 ~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~  521 (522)
T cd03340         470 KWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK  521 (522)
T ss_pred             CeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence            5799999999999999999999999999999999999999999999998864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=99.35  E-value=9.3e-13  Score=108.81  Aligned_cols=54  Identities=35%  Similarity=0.414  Sum_probs=51.2

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      |+.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|.+++
T Consensus       462 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~  515 (517)
T cd03336         462 GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP  515 (517)
T ss_pred             CCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence            556799999999999999999999999999999999999999999999999865

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=99.34  E-value=1.4e-12  Score=108.21  Aligned_cols=52  Identities=40%  Similarity=0.653  Sum_probs=49.7

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      .++|+|+.+|.+.||++.|||||+.||.++|++|+|+|++|||||++|.+++
T Consensus       480 ~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~  531 (536)
T TIGR02340       480 KWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP  531 (536)
T ss_pred             ceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence            4689999999999999999999999999999999999999999999998865

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=99.33  E-value=9.1e-13  Score=108.89  Aligned_cols=52  Identities=29%  Similarity=0.510  Sum_probs=49.4

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      |+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||.+
T Consensus       465 ~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~  516 (517)
T TIGR02342       465 GEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT  516 (517)
T ss_pred             CCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence            5567999999999999999999999999999999999999999999999875

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.32  E-value=2.9e-12  Score=107.18  Aligned_cols=54  Identities=17%  Similarity=0.329  Sum_probs=50.9

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      .++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||++|+.++.+
T Consensus       473 ~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~  526 (542)
T PRK12849        473 DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEE  526 (542)
T ss_pred             CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence            368999999999999999999999999999999999999999999999987754

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=99.32  E-value=1.3e-12  Score=107.48  Aligned_cols=52  Identities=27%  Similarity=0.449  Sum_probs=49.2

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      ++.++|+|+.+|.+.||++.|||||+.||+++|++|+++|++|||||+||++
T Consensus       464 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~  515 (515)
T cd03338         464 GEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA  515 (515)
T ss_pred             cCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence            4567999999999999999999999999999999999999999999999864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=99.31  E-value=2.2e-12  Score=106.73  Aligned_cols=54  Identities=67%  Similarity=1.086  Sum_probs=50.5

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      ++.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+++.
T Consensus       468 ~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~  521 (522)
T TIGR02345       468 GGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNPK  521 (522)
T ss_pred             CCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCCC
Confidence            445799999999999999999999999999999999999999999999998754

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=99.31  E-value=2.4e-12  Score=106.26  Aligned_cols=53  Identities=36%  Similarity=0.668  Sum_probs=50.2

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      +.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|.+.+
T Consensus       471 ~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~  523 (525)
T TIGR02344       471 NCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK  523 (525)
T ss_pred             CCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence            45799999999999999999999999999999999999999999999998755

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK14104 chaperonin GroEL; Provisional

Probab=99.30  E-value=5.7e-12  Score=105.47  Aligned_cols=60  Identities=20%  Similarity=0.374  Sum_probs=53.2

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ   63 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~   63 (99)
                      ..++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|..++...+..+
T Consensus       474 ~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~  533 (546)
T PRK14104        474 QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGP  533 (546)
T ss_pred             CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence            346899999999999999999999999999999999999999999999988665544333

>cd03343 cpn60 cpn60 chaperonin family

Probab=99.29  E-value=3e-12  Score=105.32  Aligned_cols=53  Identities=38%  Similarity=0.523  Sum_probs=49.7

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      ++.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++||+||++|+++
T Consensus       465 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  517 (517)
T cd03343         465 GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK  517 (517)
T ss_pred             cCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence            45679999999999999999999999999999999999999999999999764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.28  E-value=7e-12  Score=106.22  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      ++.++|+|+.+|++.||++.|||||+.||+++|++|+++|++||+||++|+.++
T Consensus       529 ~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~  582 (600)
T PLN03167        529 DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIK  582 (600)
T ss_pred             CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            345789999999999999999999999999999999999999999999999864

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=99.28  E-value=3.7e-12  Score=105.09  Aligned_cols=52  Identities=37%  Similarity=0.514  Sum_probs=48.9

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      ++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|++
T Consensus       468 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  519 (519)
T TIGR02339       468 GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA  519 (519)
T ss_pred             cCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence            4567999999999999999999999999999999999999999999999863

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=99.27  E-value=3.4e-12  Score=105.53  Aligned_cols=50  Identities=30%  Similarity=0.404  Sum_probs=47.6

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK   53 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~   53 (99)
                      +.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+
T Consensus       477 ~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         477 NPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             CCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence            45799999999999999999999999999999999999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=99.26  E-value=4e-12  Score=104.07  Aligned_cols=52  Identities=38%  Similarity=0.406  Sum_probs=49.1

Q ss_pred             CCceeeeeccCC--ccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKE--DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G--~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      ++.++|+|+.+|  ++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus       418 ~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  471 (472)
T cd03341         418 GNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA  471 (472)
T ss_pred             cCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence            455799999999  9999999999999999999999999999999999999865

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=99.25  E-value=5e-12  Score=103.70  Aligned_cols=50  Identities=36%  Similarity=0.647  Sum_probs=47.8

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK   53 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~   53 (99)
                      +.++|||+.+|.+.||++.|||||+.+|+++|++|+|+|++|||||++|.
T Consensus       430 ~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~  479 (480)
T cd03337         430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS  479 (480)
T ss_pred             CCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence            45799999999999999999999999999999999999999999999985

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0363|consensus

Probab=99.25  E-value=3.8e-12  Score=104.50  Aligned_cols=59  Identities=32%  Similarity=0.404  Sum_probs=55.3

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCC
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE   60 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~   60 (99)
                      +|++++|||+++|.|.||++.||+|+|.||++++.+|.|+|.+|||+|.||++.|+.+.
T Consensus       466 ~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~  524 (527)
T KOG0363|consen  466 NGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERE  524 (527)
T ss_pred             cCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccc
Confidence            57889999999999999999999999999999999999999999999999999877543

>CHL00093 groEL chaperonin GroEL

Probab=99.22  E-value=1.1e-11  Score=103.14  Aligned_cols=52  Identities=21%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      .++|+|+.+|.+.||++.|||||+.||.++|++|+++|++||+||++|..++
T Consensus       475 ~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~  526 (529)
T CHL00093        475 FEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK  526 (529)
T ss_pred             CCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999999999999999999999764

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=99.20  E-value=1.5e-11  Score=102.27  Aligned_cols=51  Identities=31%  Similarity=0.413  Sum_probs=48.3

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      +.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus       481 ~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~  531 (532)
T TIGR02343       481 NPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP  531 (532)
T ss_pred             CCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence            457999999999999999999999999999999999999999999999953

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00114 Heat shock protein 60; Provisional

Probab=99.20  E-value=3.2e-11  Score=100.97  Aligned_cols=56  Identities=20%  Similarity=0.337  Sum_probs=51.8

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      ++.++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|++.+..
T Consensus       488 ~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  543 (555)
T PTZ00114        488 KDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE  543 (555)
T ss_pred             CCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence            45578999999999999999999999999999999999999999999999986543

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=99.19  E-value=1.9e-11  Score=99.10  Aligned_cols=51  Identities=33%  Similarity=0.489  Sum_probs=47.9

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK   53 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~   53 (99)
                      +..++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus       414 ~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  464 (464)
T cd00309         414 GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             cCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence            345789999999999999999999999999999999999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=99.18  E-value=9.4e-12  Score=99.62  Aligned_cols=52  Identities=35%  Similarity=0.539  Sum_probs=49.8

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      .++|+|+.+|.+.||.+.|||||+.+|.++|+.|+|+|++|||||++|.++|
T Consensus       434 ~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~  485 (485)
T PF00118_consen  434 NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP  485 (485)
T ss_dssp             TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred             cccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999999999999999999999999999998764

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>TIGR02348 GroEL chaperonin GroL

Probab=99.08  E-value=1.1e-10  Score=97.02  Aligned_cols=50  Identities=20%  Similarity=0.411  Sum_probs=47.6

Q ss_pred             eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      ++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|...
T Consensus       473 ~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~  522 (524)
T TIGR02348       473 NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADK  522 (524)
T ss_pred             CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence            48999999999999999999999999999999999999999999999753

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.5e-10  Score=97.10  Aligned_cols=53  Identities=32%  Similarity=0.510  Sum_probs=50.1

Q ss_pred             eeeeeccCCcc-ccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          6 WYGVDITKEDI-SDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         6 ~~GVdi~~G~i-~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      ++|+|+.+|++ .||++.|||||+.||+++|++|+++|.+||+||++|.+++..
T Consensus       464 ~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~  517 (524)
T COG0459         464 NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE  517 (524)
T ss_pred             ccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence            58999999999 679999999999999999999999999999999999997765

>KOG0362|consensus

Probab=99.07  E-value=8.2e-11  Score=98.45  Aligned_cols=60  Identities=40%  Similarity=0.497  Sum_probs=55.3

Q ss_pred             CceeeeeccCC-ccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079          4 NCWYGVDITKE-DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ   63 (99)
Q Consensus         4 ~~~~GVdi~~G-~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~   63 (99)
                      ..+.|+|+... .+.|++++||||-+.+|.++|++|+|+|.++|+||+||+++++++|++|
T Consensus       469 g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~  529 (537)
T KOG0362|consen  469 GKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP  529 (537)
T ss_pred             CCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence            34578998776 5889999999999999999999999999999999999999999999888

>cd03344 GroEL GroEL_like type I chaperonin

Probab=98.95  E-value=5.3e-10  Score=93.09  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=46.4

Q ss_pred             eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079          6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK   53 (99)
Q Consensus         6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~   53 (99)
                      ++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||.+|.
T Consensus       472 ~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~  519 (520)
T cd03344         472 GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV  519 (520)
T ss_pred             CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            689999999999999999999999999999999999999999998875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>KOG0358|consensus

Probab=98.79  E-value=2.9e-09  Score=88.05  Aligned_cols=53  Identities=28%  Similarity=0.433  Sum_probs=50.7

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      +|+.++|||+++|.+.||.++.|+.|+.|..+++++|+|.+.+||+||+|+.+
T Consensus       481 qge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a  533 (534)
T KOG0358|consen  481 QGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA  533 (534)
T ss_pred             cCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence            58889999999999999999999999999999999999999999999999864

>KOG0364|consensus

Probab=98.76  E-value=4.4e-09  Score=87.61  Aligned_cols=58  Identities=31%  Similarity=0.493  Sum_probs=52.8

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCC
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG   59 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~   59 (99)
                      .|...+|||..+|.+.||.+.++|+|+.||.|.+++|.|+|+.+||||+|+..++...
T Consensus       468 ~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~v  525 (527)
T KOG0364|consen  468 EGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKRV  525 (527)
T ss_pred             CcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeecc
Confidence            3667889999999999999999999999999999999999999999999998765543

>KOG0357|consensus

Probab=98.52  E-value=5.2e-08  Score=79.19  Aligned_cols=53  Identities=28%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      ++.++|||+...+..||++.+|+|++..|+++|.+||+.+.|||+||+|++..
T Consensus       344 ~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~  396 (400)
T KOG0357|consen  344 MNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG  396 (400)
T ss_pred             cCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence            45678999988788899999999999999999999999999999999998754

>KOG0360|consensus

Probab=98.20  E-value=7.2e-07  Score=75.02  Aligned_cols=55  Identities=35%  Similarity=0.462  Sum_probs=50.4

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA   57 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~   57 (99)
                      +-+++|+|+.+|++.|.++.|+++|..+|...|+.|+|+|.+|||||+.|.-.|.
T Consensus       484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~  538 (545)
T KOG0360|consen  484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPE  538 (545)
T ss_pred             cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcc
Confidence            3468999999999999999999999999999999999999999999999975443

>KOG0359|consensus

Probab=98.00  E-value=5e-06  Score=69.58  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=48.0

Q ss_pred             eeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079          7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA   57 (99)
Q Consensus         7 ~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~   57 (99)
                      .|+|+.+|+..+....||||+|.||+++|.+++-.|+.+|.+|+|+++...
T Consensus       467 ~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~  517 (520)
T KOG0359|consen  467 RGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS  517 (520)
T ss_pred             cccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence            599999999999999999999999999999999999999999999998643

>KOG0356|consensus

Probab=95.75  E-value=0.0055  Score=52.45  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=48.9

Q ss_pred             eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      .||.|..++++.||++.||+||..|-+.+|..|...|++++..+-+|...+..
T Consensus       488 ~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~  540 (550)
T KOG0356|consen  488 DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKE  540 (550)
T ss_pred             hhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccc
Confidence            68999999999999999999999999999999999999999999888875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
3iyg_H	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-19
3p9d_G	550	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-11
3ko1_A	553	Cystal Structure Of Thermosome From Acidianus Tengc		2e-07
3p9d_C	590	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-05
3iyg_A	529	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		3e-05
1q3r_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-05
1q3s_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-05
1q2v_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-05
1a6d_B	543	Thermosome From T. Acidophilum Length = 543		6e-05

>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
           Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP+
Sbjct: 461 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515

>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
           WYGV    E+I DN    VWEPA+VK NA+ +A+EA  L+LSVDETI N
Sbjct: 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526

>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           ++N WYG+D+      D  +  V EPA+VK NAI AA+EAA LVL +D+ +
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV 530

>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           Q N   G+D  K  I D +   +WEP ++K+ ++  A E+ACL+L VD+ +
Sbjct: 533 QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 583

>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6   WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           W G+D+      DN ++ V+EP IVK  ++  A+EAA  +L +D+ IK
Sbjct: 479 WIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 526

>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
               G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I
Sbjct: 474 GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522

>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
               G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I
Sbjct: 474 GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522

>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
               G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I
Sbjct: 474 GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522

>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           + N  YG+++   +I D +++ V EP  V K AI +A+EAA ++L +D+ I
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	2e-26
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	3e-26
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	6e-25
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	4e-24
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	6e-24
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	2e-23
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	3e-23
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	7e-23
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	3e-22
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	8e-22
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-21
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	5e-21
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	6e-21
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	8e-21
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	1e-20
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	3e-20
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	1e-19
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	1e-19
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	2e-19
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	2e-19
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	3e-19
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	3e-17

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =   99 bits (250), Expect = 2e-26
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           +   WYGV    E+I DN    VWEPA+VK NA+ +A+EA  L+LSVDETI N  +    
Sbjct: 474 KGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533

Query: 62  GQGMP--MPGRGRGRPI 76
              MP    GRGRG P+
Sbjct: 534 AGMMPPQGAGRGRGMPM 550

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
                 G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I       EG
Sbjct: 472 NRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEG 531

Query: 62  GQGMPMPGRGRGRP 75
           GQG  MPG   G  
Sbjct: 532 GQGGGMPGGMGGMD 545

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 96.1 bits (240), Expect = 6e-25
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK---AG 58
           +     GVD+    + D     V +P  VK +A+ +A E A ++L +D+ I + K     
Sbjct: 469 KGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPS 528

Query: 59  GEGGQGMPMPGRGRG 73
           G+GGQG  MPG G  
Sbjct: 529 GQGGQGQGMPGGGMP 543

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 93.4 bits (233), Expect = 4e-24
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           + N   G+++   ++ D  E+ V EP  +K  AI AA EA  ++L +D+ + +  +  +G
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG 482

Query: 62  GQGMPMPG 69
                +P 
Sbjct: 483 MGPGGLPD 490

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 93.0 bits (232), Expect = 6e-24
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA--G 58
              N   G+++    + D  E+ V EP  VK  AI +A+E+  ++L +D+ I   K    
Sbjct: 465 SNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 524

Query: 59  GEGGQGMPMPGRGRGRP 75
            + G    MPG G G P
Sbjct: 525 PDMGDMGGMPGMG-GMP 540

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 91.4 bits (228), Expect = 2e-23
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           + N  YG+++   +I D +++ V EP  V K AI +A+EAA ++L +D+ I    +    
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSS 529

Query: 62  GQGMPMPGRGRGR 74
                        
Sbjct: 530 NPPKSGSSSESSE 542

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 91.1 bits (227), Expect = 3e-23
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 2   QSNCWYGVDI---TKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58
             + + GVDI   + E + D  E  +++    KK AI  A+EAA  VLS+D+ I   KAG
Sbjct: 492 TDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAG 551

Query: 59  GEGGQGMPMPG 69
           G      P PG
Sbjct: 552 GPRAPQGPRPG 562

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 89.9 bits (224), Expect = 7e-23
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
           ++N WYG+D+      D  +  V EPA+VK NAI AA+EAA LVL +D+ +   K  G  
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539

Query: 62  GQGMPMPGRG 71
            +      + 
Sbjct: 540 SKTPGGANKP 549

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 88.3 bits (220), Expect = 3e-22
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
           Q   WYGVDI  EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP+
Sbjct: 461 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 87.3 bits (217), Expect = 8e-22
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPKAGGE 60
           +S   YG+D+ +  I D + + V EP I K  ++ +A EA   +L +D  I  +P+   E
Sbjct: 495 RSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPPKE 554

Query: 61  GGQG 64
               
Sbjct: 555 DPHD 558

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
               + GVD+   D  D     +W+   V +NAIT A+  A  +L  DE ++  ++  + 
Sbjct: 484 DETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE 543

Query: 62  G 62
            
Sbjct: 544 T 544

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 84.9 bits (211), Expect = 5e-21
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
              +GV+     + D  E  +WEP  VK      A E A L+L +D+ +   K
Sbjct: 463 CETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 84.5 bits (210), Expect = 6e-21
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
                 G+D+    I+D  +  + E   +K+  +++ASEAA ++L VD  I+        
Sbjct: 465 NGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANR 524

Query: 62  GQ 63
             
Sbjct: 525 QH 526

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 84.1 bits (209), Expect = 8e-21
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK 56
           +     G+D+ +  I D     + E   VK+  + +A+EAA ++L VD  IK  P+
Sbjct: 458 EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 83.4 bits (207), Expect = 1e-20
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
               GVD      +D  E  V +P I KK  I  A++   ++L +D  I + K
Sbjct: 507 ISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGK 559

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 82.6 bits (205), Expect = 3e-20
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
           Q     G+++ K  IS+ +E  V +P +V  +A+T A+E    +L +D+ +  
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT 517

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55
           ++  W G+D+      DN ++ V+EP IVK  ++  A+EAA  +L +D+ IK  
Sbjct: 475 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH 528

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 81.0 bits (201), Expect = 1e-19
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
                 G+ + +   ++  E  + +P +V  +AIT ASE    +L +D+   
Sbjct: 475 NGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
           Q N   G+D  K  I D +   +WEP ++K+ ++  A E+ACL+L VD+ +   +
Sbjct: 533 QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVR 587

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 80.3 bits (199), Expect = 2e-19
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           +S    GVD+   +     E+ +W+   VKK  + + +  A  +L VDE ++
Sbjct: 464 ESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 4   NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
           N   G+D   +  +D     V E  I KK  I+ A++   ++L +D+  K
Sbjct: 464 NPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 74.1 bits (183), Expect = 3e-17
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2   QSNCWYGVDITKE--DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           + N   G+DI  E   + D +E+ V +  + K  AI  A+ AA  VL VD+ I
Sbjct: 457 EGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	99.53
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	99.52
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	99.5
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	99.49
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	99.47
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.46
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	99.46
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	99.45
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	99.45
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	99.44
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	99.44
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	99.43
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	99.42
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	99.42
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	99.41
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	99.39
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.38
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	99.38
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	99.38
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	99.38
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	99.38
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	99.37
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	99.37
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	99.33
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.29
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.28

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=99.53  E-value=2.5e-15  Score=123.84  Aligned_cols=60  Identities=30%  Similarity=0.410  Sum_probs=51.5

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCC
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG   61 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~   61 (99)
                      +|+.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.++|+
T Consensus       466 ~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~  525 (543)
T 3ruv_A          466 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP  525 (543)
T ss_dssp             TCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC------
T ss_pred             cCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCCCC
Confidence            355689999999999999999999999999999999999999999999999998887664

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=99.52  E-value=3.1e-15  Score=123.53  Aligned_cols=57  Identities=51%  Similarity=0.821  Sum_probs=52.5

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG   59 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~   59 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|++++...
T Consensus       475 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~  531 (550)
T 3p9d_G          475 GEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSES  531 (550)
T ss_dssp             SCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC-
T ss_pred             CCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCccc
Confidence            456799999999999999999999999999999999999999999999999876653

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=99.50  E-value=8.6e-15  Score=119.50  Aligned_cols=59  Identities=29%  Similarity=0.453  Sum_probs=44.2

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG   61 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~   61 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.++|+
T Consensus       424 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~~  482 (500)
T 3aq1_B          424 GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG  482 (500)
T ss_dssp             TCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred             CCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence            45679999999999999999999999999999999999999999999999998776654

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=99.49  E-value=1.5e-16  Score=131.81  Aligned_cols=70  Identities=39%  Similarity=0.501  Sum_probs=40.6

Q ss_pred             CCceeeeeccCCc---cccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCCCCC
Q psy17079          3 SNCWYGVDITKED---ISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGR   72 (99)
Q Consensus         3 G~~~~GVdi~~G~---i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~~~~   72 (99)
                      |+.++|||+.+|.   +.||++.|||||+.||+++|++|+|+|++|||||++|+++++++|++|++++|+.|+
T Consensus       493 ~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~~~~~~~~  565 (568)
T 3p9d_H          493 DHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQGPRPGNWD  565 (568)
T ss_dssp             TTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC---------------------------
T ss_pred             CCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCCCCCCCCCCCCCC
Confidence            4567999999997   999999999999999999999999999999999999999999999876533435666

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.47  E-value=3.3e-14  Score=116.72  Aligned_cols=51  Identities=37%  Similarity=0.599  Sum_probs=49.0

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||+.+
T Consensus       478 ~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  528 (529)
T 3iyg_A          478 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH  528 (529)
T ss_pred             ceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Confidence            579999999999999999999999999999999999999999999999874

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.46  E-value=1.8e-14  Score=119.49  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCCCCCCCcccC
Q psy17079          6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPIVD   78 (99)
Q Consensus         6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~~~~~~~~~~   78 (99)
                      .+|+|+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|+++|.+.|+++++ . ++..|++|..
T Consensus       472 ~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~-~-~~~~~~~~~~  542 (546)
T 3rtk_A          472 GHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKASVPG-G-GDMGGMDFHH  542 (546)
T ss_dssp             TEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred             CEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-C-CCcCcccccc
Confidence            389999999999999999999999999999999999999999999999988776654332 3 5566666654

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=99.46  E-value=1.4e-14  Score=119.83  Aligned_cols=60  Identities=42%  Similarity=0.621  Sum_probs=48.9

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQG   64 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~   64 (99)
                      .++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.++|+.+.
T Consensus       483 ~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~  542 (553)
T 3ko1_A          483 KWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKT  542 (553)
T ss_dssp             TTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC----------
T ss_pred             ceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccCCCCC
Confidence            579999999999999999999999999999999999999999999999998887775443

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=99.45  E-value=2.5e-14  Score=117.81  Aligned_cols=58  Identities=28%  Similarity=0.386  Sum_probs=53.4

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE   60 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~   60 (99)
                      ++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||+++++++.
T Consensus       485 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~~~~  542 (546)
T 3p9d_F          485 ETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLK  542 (546)
T ss_dssp             TSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCSSCC
T ss_pred             CCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence            3457899999999999999999999999999999999999999999999998876544

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.45  E-value=5.4e-14  Score=115.33  Aligned_cols=52  Identities=27%  Similarity=0.393  Sum_probs=49.6

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||++
T Consensus       465 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  516 (517)
T 3iyg_Z          465 SGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA  516 (517)
T ss_pred             CCCcEEEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4567999999999999999999999999999999999999999999999976

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=99.44  E-value=2.5e-14  Score=117.74  Aligned_cols=61  Identities=31%  Similarity=0.492  Sum_probs=49.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ   63 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~   63 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.++|+++
T Consensus       471 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~  531 (543)
T 1a6d_B          471 GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNP  531 (543)
T ss_dssp             TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC----------
T ss_pred             CCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCC
Confidence            4567999999999999999999999999999999999999999999999999877666544

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=99.44  E-value=2.3e-14  Score=118.26  Aligned_cols=55  Identities=35%  Similarity=0.466  Sum_probs=50.6

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      +.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|..++.+
T Consensus       474 ~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~  528 (548)
T 1q3q_A          474 GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK  528 (548)
T ss_dssp             CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC--
T ss_pred             CCCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            4579999999999999999999999999999999999999999999999987654

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=99.43  E-value=8.2e-14  Score=114.05  Aligned_cols=54  Identities=30%  Similarity=0.343  Sum_probs=51.2

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+++|
T Consensus       459 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  512 (513)
T 3iyg_B          459 GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP  512 (513)
T ss_pred             CCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            556799999999999999999999999999999999999999999999999865

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.42  E-value=1e-13  Score=113.62  Aligned_cols=53  Identities=72%  Similarity=1.185  Sum_probs=50.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus       462 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~  514 (515)
T 3iyg_H          462 GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP  514 (515)
T ss_pred             cCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45678999999999999999999999999999999999999999999999865

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=99.42  E-value=4.8e-14  Score=116.27  Aligned_cols=56  Identities=29%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..++.+
T Consensus       470 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~  525 (545)
T 1a6d_A          470 GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKST  525 (545)
T ss_dssp             TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred             CCCCcceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            45679999999999999999999999999999999999999999999999987655

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.41  E-value=8.4e-14  Score=114.10  Aligned_cols=53  Identities=26%  Similarity=0.423  Sum_probs=50.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus       466 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  518 (518)
T 3iyg_D          466 GEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR  518 (518)
T ss_pred             cCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEecC
Confidence            55679999999999999999999999999999999999999999999999864

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=99.39  E-value=8.9e-14  Score=114.27  Aligned_cols=53  Identities=23%  Similarity=0.371  Sum_probs=50.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus       476 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  528 (528)
T 3p9d_D          476 GELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR  528 (528)
T ss_dssp             SSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred             cCCccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheecC
Confidence            55679999999999999999999999999999999999999999999999864

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.38  E-value=1.2e-13  Score=114.08  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQG   64 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~   64 (99)
                      ++.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+|.+.+++|+
T Consensus       473 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~  534 (543)
T 1we3_A          473 KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA  534 (543)
T ss_dssp             SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC------
T ss_pred             CCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCC
Confidence            34578999999999999999999999999999999999999999999999987766554443

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.38  E-value=2.2e-13  Score=111.57  Aligned_cols=52  Identities=29%  Similarity=0.433  Sum_probs=48.9

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||...
T Consensus       463 ~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  514 (515)
T 3iyg_G          463 CETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH  514 (515)
T ss_pred             CCceeeeCCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence            3478999999999999999999999999999999999999999999999753

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=99.38  E-value=1.3e-13  Score=114.18  Aligned_cols=56  Identities=29%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      ++.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||++++++
T Consensus       506 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~  561 (562)
T 3p9d_E          506 KISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE  561 (562)
T ss_dssp             TTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC--
T ss_pred             CCCceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            44679999999999999999999999999999999999999999999999987653

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.38  E-value=2.6e-13  Score=110.94  Aligned_cols=53  Identities=36%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             CCceeeeeccCC--ccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKE--DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G--~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      |+.++|+|+.+|  ++.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus       458 ~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~k  512 (512)
T 3iyg_Q          458 GNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAK  512 (512)
T ss_pred             CCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheecC
Confidence            566899999965  99999999999999999999999999999999999999864

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.38  E-value=2.9e-13  Score=110.75  Aligned_cols=52  Identities=27%  Similarity=0.318  Sum_probs=49.4

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN   54 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a   54 (99)
                      ++.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||+||++
T Consensus       463 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          463 VNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             CCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            4567999999999999999999999999999999999999999999999976

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=99.37  E-value=9.8e-14  Score=113.78  Aligned_cols=56  Identities=27%  Similarity=0.327  Sum_probs=50.5

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.++|..
T Consensus       466 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~  521 (527)
T 3p9d_B          466 GISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRT  521 (527)
T ss_dssp             TCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred             CCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence            45679999999999999999999999999999999999999999999999987553

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=99.37  E-value=2.8e-13  Score=112.07  Aligned_cols=53  Identities=30%  Similarity=0.479  Sum_probs=50.1

Q ss_pred             eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079          6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG   58 (99)
Q Consensus         6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~   58 (99)
                      ++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|++.|..
T Consensus       499 ~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~  551 (559)
T 3p9d_A          499 NYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEP  551 (559)
T ss_dssp             CEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCC
T ss_pred             ceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCcc
Confidence            68999999999999999999999999999999999999999999999986543

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=99.33  E-value=3.7e-13  Score=112.44  Aligned_cols=55  Identities=33%  Similarity=0.621  Sum_probs=51.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA   57 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~   57 (99)
                      |+.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+++.
T Consensus       534 ~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  588 (590)
T 3p9d_C          534 GNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRK  588 (590)
T ss_dssp             SCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCCC-
T ss_pred             CCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5567999999999999999999999999999999999999999999999987653

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.29  E-value=7e-13  Score=109.71  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG   59 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~   59 (99)
                      +.++|+|+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..++...
T Consensus       474 ~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~  529 (545)
T 1iok_A          474 DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPK  529 (545)
T ss_dssp             STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC---
T ss_pred             CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCccC
Confidence            34789999999999999999999999999999999999999999999999876543

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.28  E-value=1.1e-12  Score=108.58  Aligned_cols=55  Identities=16%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG   59 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~   59 (99)
                      .++|+|+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+|...
T Consensus       473 ~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~  527 (547)
T 1kp8_A          473 GNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKND  527 (547)
T ss_dssp             TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred             CCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccC
Confidence            4689999999999999999999999999999999999999999999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	2e-14
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	9e-14
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	7e-11
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	2e-07
d1sjpa1	180	a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My	6e-07

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
            +     GVD+    + D     V +P  VK +A+ +A E A ++L +D+ I
Sbjct: 194 EKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 62.0 bits (150), Expect = 9e-14
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           + N  YG+++   +I D +++ V EP  V K AI +A+EAA ++L +D+ I
Sbjct: 192 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 54.4 bits (130), Expect = 7e-11
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
                  G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I
Sbjct: 203 KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
              N  YG +    +  D +E+ + +PA V ++A+  A+    L+L+ +  +  
Sbjct: 200 ETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAE 253

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 43.2 bits (101), Expect = 6e-07
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVD 49
                 +G++       D + + V +P  V ++A+  A+  A L L+ +
Sbjct: 132 RNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.45
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.36
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.09
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	98.96
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	98.74
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	98.16
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	97.15

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.45  E-value=1.3e-14  Score=107.48  Aligned_cols=52  Identities=37%  Similarity=0.569  Sum_probs=49.0

Q ss_pred             CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079          2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK   53 (99)
Q Consensus         2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~   53 (99)
                      +|+.++|||+.+|.+.||.+.|||||+.||+++|++|+|+|++|||||+||.
T Consensus       192 ~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         192 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             TTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             CCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3667899999999999999999999999999999999999999999999873

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.36  E-value=9.6e-14  Score=102.31  Aligned_cols=50  Identities=30%  Similarity=0.468  Sum_probs=47.5

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHh
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI   52 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI   52 (99)
                      ++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||
T Consensus       196 ~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         196 GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             CCceeeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence            45678999999999999999999999999999999999999999999986

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.09  E-value=1.6e-11  Score=90.74  Aligned_cols=53  Identities=36%  Similarity=0.488  Sum_probs=50.0

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP   55 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~   55 (99)
                      ++.++|||+.+|.+.||.+.|||||+.||.+.+++|++++.+||+||++|+++
T Consensus       205 ~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         205 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             HCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             CCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence            34578999999999999999999999999999999999999999999999886

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=1.2e-10  Score=85.06  Aligned_cols=53  Identities=23%  Similarity=0.436  Sum_probs=49.9

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      +.++|+|+.+|.+.||++.||+||+.|+.+.++.|++++.+||++|++|+++|
T Consensus       203 ~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~p  255 (255)
T d1we3a1         203 NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP  255 (255)
T ss_dssp             CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred             CCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence            45689999999999999999999999999999999999999999999998765

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.74  E-value=3e-09  Score=75.01  Aligned_cols=46  Identities=22%  Similarity=0.245  Sum_probs=43.1

Q ss_pred             CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhch
Q psy17079          3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSV   48 (99)
Q Consensus         3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrI   48 (99)
                      .+.++|+|..+|.+.||++.||+||+.|++++|+.|+++|.+||..
T Consensus       134 ~~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltt  179 (180)
T d1sjpa1         134 LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT  179 (180)
T ss_dssp             SCTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhC
Confidence            3467899999999999999999999999999999999999999974

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.16  E-value=3.7e-07  Score=66.45  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      ..+|+|..++...||++.||+||+.|++.+|..|++.|.+||..|.+|...|
T Consensus       201 ~~~g~~~~~~~~g~~~~~GiidP~kVt~~al~~A~sva~~lltte~~i~~~p  252 (252)
T d1ioka1         201 KAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP  252 (252)
T ss_dssp             TTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred             CCEEEEceeeeEeeeecccccCcHHHHHHHHHHHHhhhhHHHhhceeeecCC
Confidence            4689999999999999999999999999999999999999999998887543

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00011  Score=53.03  Aligned_cols=53  Identities=17%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079          4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK   56 (99)
Q Consensus         4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~   56 (99)
                      ..++|.|..++...|+++.||+||+.|....+..|...+.+||..|..|...|
T Consensus       199 ~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~p  251 (252)
T d1kp8a1         199 DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP  251 (252)
T ss_dssp             CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred             CCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccceeEeecccccCCC
Confidence            34679999999999999999999999999999999999999999988876543