Psyllid ID: psy170

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80----
MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFDL
ccccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccEEEEcHEEEcccccccc
MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSlleggktkeelardtpllgvpitIKGSIALkargsfdl
mrikvtseqvVRAYilrcrdvnpyLNAIVEERYAEAIREAHAVDQSlleggktkeelardtpllgvpitikgsialkargsfdl
MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFDL
*******EQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLL***********DTPLLGVPITIKGSIAL********
*RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS***
MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFDL
**IKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSF**
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MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query84 2.2.26 [Sep-21-2011]
Q6GMR7 532 Fatty-acid amide hydrolas yes N/A 0.892 0.140 0.48 2e-13
Q6DH69 532 Fatty-acid amide hydrolas yes N/A 0.916 0.144 0.454 4e-12
Q05AM4 526 Fatty-acid amide hydrolas no N/A 0.916 0.146 0.415 2e-10
P59385 524 Indoleacetamide hydrolase yes N/A 0.857 0.137 0.392 1e-06
>sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 4   KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
           KV    VV+AYI R +DVNP +N IV+ R+ EA++EAHAVDQ L E  + +  L    P 
Sbjct: 64  KVKCIDVVQAYINRIKDVNPMINGIVKYRFEEAMKEAHAVDQKLAEKQEDEATLENKWPF 123

Query: 64  LGVPITIKGSIALKA 78
           LGVP+T+K +  L+ 
Sbjct: 124 LGVPLTVKEAFQLQG 138
Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes monounsaturated substrate anandamide preferentially as compared to polyunsaturated substrates.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9
>sp|Q6DH69|FAH2A_DANRE Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1 Back     alignment and function description
>sp|Q05AM4|FAH2B_DANRE Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1 Back     alignment and function description
>sp|P59385|HYIN_BRAJA Indoleacetamide hydrolase OS=Bradyrhizobium japonicum (strain USDA 110) GN=bam PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query84
383864475 542 PREDICTED: fatty-acid amide hydrolase 2- 0.892 0.138 0.64 2e-19
350424271 508 PREDICTED: fatty-acid amide hydrolase 2- 0.880 0.145 0.608 1e-18
357622782 527 hypothetical protein KGM_07427 [Danaus p 0.892 0.142 0.533 3e-17
340722805 525 PREDICTED: fatty-acid amide hydrolase 2- 0.880 0.140 0.567 2e-16
312378863 527 hypothetical protein AND_09466 [Anophele 0.892 0.142 0.552 5e-16
170030527 551 amidase [Culex quinquefasciatus] gi|1678 0.892 0.136 0.533 2e-15
194744169 528 GF16679 [Drosophila ananassae] gi|190627 0.892 0.142 0.506 4e-15
195158928 530 GL13563 [Drosophila persimilis] gi|19411 0.892 0.141 0.506 6e-15
195449724 533 GK22453 [Drosophila willistoni] gi|19416 0.892 0.140 0.506 6e-15
195390663 528 GJ23043 [Drosophila virilis] gi|19415207 0.892 0.142 0.506 6e-15
>gi|383864475|ref|XP_003707704.1| PREDICTED: fatty-acid amide hydrolase 2-like [Megachile rotundata] Back     alignment and taxonomy information
 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 58/75 (77%)

Query: 4   KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
           K++SE+VVRAYI RC+DVNP LNAIVE R+  A  EA  VDQ L    KT+EELARD PL
Sbjct: 80  KISSEEVVRAYIQRCKDVNPILNAIVESRFDAATLEAKEVDQFLSRTTKTEEELARDMPL 139

Query: 64  LGVPITIKGSIALKA 78
           LGVP+T+K SIA++ 
Sbjct: 140 LGVPVTVKESIAVQG 154

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350424271|ref|XP_003493741.1| PREDICTED: fatty-acid amide hydrolase 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|357622782|gb|EHJ74177.1| hypothetical protein KGM_07427 [Danaus plexippus] Back     alignment and taxonomy information
>gi|340722805|ref|XP_003399792.1| PREDICTED: fatty-acid amide hydrolase 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|312378863|gb|EFR25316.1| hypothetical protein AND_09466 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170030527|ref|XP_001843140.1| amidase [Culex quinquefasciatus] gi|167867381|gb|EDS30764.1| amidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|194744169|ref|XP_001954567.1| GF16679 [Drosophila ananassae] gi|190627604|gb|EDV43128.1| GF16679 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195158928|ref|XP_002020335.1| GL13563 [Drosophila persimilis] gi|194117104|gb|EDW39147.1| GL13563 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195449724|ref|XP_002072196.1| GK22453 [Drosophila willistoni] gi|194168281|gb|EDW83182.1| GK22453 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195390663|ref|XP_002053987.1| GJ23043 [Drosophila virilis] gi|194152073|gb|EDW67507.1| GJ23043 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query84
FB|FBgn0038803 552 CG5191 [Drosophila melanogaste 0.880 0.134 0.513 4e-15
UNIPROTKB|Q6GMR7 532 FAAH2 "Fatty-acid amide hydrol 0.880 0.139 0.486 3.9e-12
FB|FBgn0033717 529 CG8839 [Drosophila melanogaste 0.880 0.139 0.432 1.7e-11
ZFIN|ZDB-GENE-040718-453 532 faah2a "fatty acid amide hydro 0.892 0.140 0.480 2.9e-11
FB|FBgn0037547 530 CG7910 [Drosophila melanogaste 0.904 0.143 0.423 4.4e-10
ZFIN|ZDB-GENE-061027-358 526 faah2b "fatty acid amide hydro 0.904 0.144 0.421 5.5e-10
FB|FBgn0037548 536 CG7900 [Drosophila melanogaste 0.869 0.136 0.428 8.7e-09
FB|FBgn0039341 523 CG5112 [Drosophila melanogaste 0.857 0.137 0.397 1.5e-06
WB|WBGene00013164 535 Y53F4B.18 [Caenorhabditis eleg 0.869 0.136 0.315 0.00022
FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 200 (75.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query:     4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
             K+ SE+VV AYI RCR VNP +NAIV++R+ EA+ EA  +D  +  G  + E +   TPL
Sbjct:    79 KIKSEEVVEAYIERCRQVNPLINAIVQDRFEEALEEAREIDNVIAMGINSVESMEELTPL 138

Query:    64 LGVPITIKGSIALK 77
             LG+P+T+K SIA+K
Sbjct:   139 LGIPVTVKESIAVK 152
GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS
UNIPROTKB|Q6GMR7 FAAH2 "Fatty-acid amide hydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0033717 CG8839 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-453 faah2a "fatty acid amide hydrolase 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0037547 CG7910 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061027-358 faah2b "fatty acid amide hydrolase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0037548 CG7900 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039341 CG5112 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00013164 Y53F4B.18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query84
PRK07487 469 PRK07487, PRK07487, amidase; Provisional 6e-12
PRK00012 459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 2e-09
COG0154 475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 9e-09
PRK06529 482 PRK06529, PRK06529, amidase; Provisional 9e-08
pfam01425 431 pfam01425, Amidase, Amidase 2e-07
PRK06170 490 PRK06170, PRK06170, amidase; Provisional 5e-07
PRK12470 462 PRK12470, PRK12470, amidase; Provisional 4e-06
PRK07486 484 PRK07486, PRK07486, amidase; Provisional 8e-06
PRK06061 483 PRK06061, PRK06061, amidase; Provisional 2e-04
PRK07869 468 PRK07869, PRK07869, amidase; Provisional 0.002
PRK07488 472 PRK07488, PRK07488, indole acetimide hydrolase; Va 0.004
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information 
 Score = 58.8 bits (143), Expect = 6e-12
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 4  KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
           V++ +   A + R   VNP +NA+V+ R  EA+ +A AVD +   G           PL
Sbjct: 21 DVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPG-------PL 73

Query: 64 LGVPITIK 71
           GVP+T+K
Sbjct: 74 AGVPVTVK 81

Length = 469
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 84
TIGR02715 452 amido_AtzE amidohydrolase, AtzE family. Members of 99.85
PRK07042 464 amidase; Provisional 99.85
PRK09201 465 amidase; Provisional 99.85
PRK06169 466 putative amidase; Provisional 99.84
PRK07487 469 amidase; Provisional 99.84
PRK06170 490 amidase; Provisional 99.83
PRK07056 454 amidase; Provisional 99.83
PRK00012 459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 99.82
PRK06102 452 hypothetical protein; Provisional 99.82
PRK06061 483 amidase; Provisional 99.82
PRK12470 462 amidase; Provisional 99.82
PRK07486 484 amidase; Provisional 99.81
PF01425 441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 99.81
PRK08137 497 amidase; Provisional 99.8
TIGR00132 460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 99.79
PRK07869 468 amidase; Provisional 99.79
COG0154 475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 99.79
PRK06565 566 amidase; Validated 99.78
PRK06828 491 amidase; Provisional 99.78
PRK07488 472 indole acetimide hydrolase; Validated 99.78
PRK11910 615 amidase; Provisional 99.78
PRK06707 536 amidase; Provisional 99.77
PRK06529 482 amidase; Provisional 99.76
PRK05962 424 amidase; Validated 99.73
PRK08186 600 allophanate hydrolase; Provisional 99.73
KOG1212|consensus 560 99.55
PRK07235 502 amidase; Provisional 99.47
KOG1211|consensus 506 99.37
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 99.35
PRK07139 439 amidase; Provisional 98.94
PRK08310 395 amidase; Provisional 98.66
PLN02722 422 indole-3-acetamide amidohydrolase 98.65
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information 
Probab=99.85  E-value=3.7e-21  Score=136.13  Aligned_cols=75  Identities=24%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170            2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS   81 (84)
Q Consensus         2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t   81 (84)
                      +|++|++|+++++++||++.++.+|+|+.+.+++|+++|+++|++++.+..       .|||+||||+|||||+++|++|
T Consensus        11 ~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPv~vKD~~~v~G~~t   83 (452)
T TIGR02715        11 SGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSP-------LGPLAGVPFAVKNLFDVAGLTT   83 (452)
T ss_pred             cCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeEEEEeccccCCcee
Confidence            689999999999999999999999999999999999999999998888764       6999999999999999999999


Q ss_pred             CC
Q psy170           82 FD   83 (84)
Q Consensus        82 t~   83 (84)
                      |+
T Consensus        84 t~   85 (452)
T TIGR02715        84 LA   85 (452)
T ss_pred             Cc
Confidence            86

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>KOG1212|consensus Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>KOG1211|consensus Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query84
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 1e-11
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 2e-10
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 8e-09
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-08
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 3e-07
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 8e-07
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 1e-05
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 4   KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
           +++ E V   Y+ +  +VN   N +         + +               +  R   L
Sbjct: 84  ELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS---------------QAPRQGLL 128

Query: 64  LGVPITIKGSIALK 77
            GVP+++K   + K
Sbjct: 129 YGVPVSLKECFSYK 142
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query84
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 99.86
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 99.85
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 99.84
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 99.8
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 99.75
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 99.75
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 99.7
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 99.67
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 99.62
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 99.21
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
Probab=99.86  E-value=5.5e-22  Score=138.80  Aligned_cols=74  Identities=23%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170            2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS   81 (84)
Q Consensus         2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t   81 (84)
                      +|++|++|+++++++||++.++ +|+|+++++++|+++|+++|++++.+..       .|||+||||+|||||+++|++|
T Consensus        12 ~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t   83 (434)
T 2dc0_A           12 TGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV-------RGPLHGLPLTVKDLFPVKGMPT   83 (434)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTSCBTTBCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC-------CCCcCCeeEEEEeccccCCccc
Confidence            6899999999999999999999 9999999999999999999999888765       6999999999999999999999


Q ss_pred             CC
Q psy170           82 FD   83 (84)
Q Consensus        82 t~   83 (84)
                      |+
T Consensus        84 t~   85 (434)
T 2dc0_A           84 RA   85 (434)
T ss_dssp             CT
T ss_pred             CC
Confidence            96
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 84
d2f2aa1 485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-15
d1m22a_ 490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-13
d1mt5a_ 537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 4e-11
d2gi3a1 475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 5e-10
d1ocka_ 412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 4e-09
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 66.4 bits (161), Expect = 3e-15
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 4  KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
          K+    VV+       + +P + + +      AI++A  +D+   +          D  L
Sbjct: 19 KIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKD-------QMDGKL 71

Query: 64 LGVPITIKGSIALK 77
           G+P+ IK +I   
Sbjct: 72 FGIPMGIKDNIITN 85
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query84
d2f2aa1 485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 99.88
d1m22a_ 490 Peptide amidase Pam {Stenotrophomonas maltophilia 99.86
d1mt5a_ 537 Fatty acid amide hydrolase (oleamide hydrolase) {R 99.76
d1ocka_ 412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 99.68
d2gi3a1 475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 99.67
d2dloa233 Thyroid receptor interacting protein 6, TRIP6 {Hum 86.83
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=1.5e-23  Score=144.87  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=71.4

Q ss_pred             CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170            2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS   81 (84)
Q Consensus         2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t   81 (84)
                      +|++|++||+++|++||++.|+.+|||+++++++|+++|+++|+.++.+..       .|||+||||+|||||+++|++|
T Consensus        17 ~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~-------~gpL~GiPi~vKD~~~v~g~~t   89 (485)
T d2f2aa1          17 DKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM-------DGKLFGIPMGIKDNIITNGLET   89 (485)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTBCBTTBCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCcCeEEEEcccccCCCcc
Confidence            689999999999999999999999999999999999999999999888765       7999999999999999999999


Q ss_pred             CC
Q psy170           82 FD   83 (84)
Q Consensus        82 t~   83 (84)
                      |+
T Consensus        90 t~   91 (485)
T d2f2aa1          90 TC   91 (485)
T ss_dssp             CT
T ss_pred             CC
Confidence            96
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure