Psyllid ID: psy1713

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
SNDIHSNINSICSTYSKSKLSLNNVSSPPSNERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccEEEccccccccccccccccccccccccccEEccccEEccEEEEccccccccEEEcccccccccHHHHHHHcccccccccccccccccccccEEEEEEEEEEccccEEEEEEcccccccccccEEEccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccEEEcccc
cccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHcEccccccHHHHHHHHHHHccHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccEEcccccccccccHHHHHHHccccccEEHHHHccccccEEEEccccccccccccccccccccHHHHHHHHccHHHcccccccccHHHHcccccccEEEEEccccEEEEEEEEEEccccEEEEEEEcccEccccccccccccccccEEEEEEEEEccccccccccEEEEEEcccccEEEEccc
SNDIHSNINSICSTYSKsklslnnvssppsnerkslsskdsssngnskcllpkpkeilyspnkitlgwqgrvpagagLVNAINTCYLNSCLQALFHIpsfhnwllndtehqtlcekqsgyqfECLVCAMRKTLAHCQaksgsairpELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLkaipssnkldsaskettpIYQLFGTYlrtevtcnscshistqclfhsrldsaskettpIYQLFGTYlrtevtcnscshisnlelSLDIRQSSSLDEALGHFFakeylggdnlyrcekcgrkveatkrfsvdkppnvlRLQLKRFnyhglknsrsvqvplhlefgkfmhcrmshsqLKYKLVSAVIhhgsspdsghytcigstssgsyhyfdde
SNDIHSNINSICSTYSKSKLSLNNVSSPPSNErkslsskdsssngnskcllpkpkeILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQaksgsairpelIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSsnkldsaskeTTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAkeylggdnlYRCEKCGRKVeatkrfsvdkppnvlRLQLKRFNyhglknsrsvQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGStssgsyhyfdde
SNDIHSNINSICSTYsksklslnnvssppsnerkslsskdsssngnskCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE
******************************************************KEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAI************TTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHG*****GHYTCIG*************
*************************************************************************AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTL*****GYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSY*************************TYLRTEVTCNSCSHISTQCLF***********TPIYQLFGTYLRTEV*****SH*SNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMH*R*SHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE
SNDIHSNINSICSTYSKSK***************************SKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE
*****SN*NSICS****************************************PKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFD**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SNDIHSNINSICSTYSKSKLSLNNVSSPPSNERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
B4LG38 1214 Ubiquitin carboxyl-termin N/A N/A 0.806 0.263 0.409 3e-68
B4KXJ5 1185 Ubiquitin carboxyl-termin N/A N/A 0.806 0.270 0.407 7e-68
B3M3M6 1091 Ubiquitin carboxyl-termin N/A N/A 0.775 0.282 0.418 2e-67
Q2LZB1 1059 Ubiquitin carboxyl-termin yes N/A 0.858 0.322 0.394 2e-67
B4IXE0 1240 Ubiquitin carboxyl-termin N/A N/A 0.778 0.249 0.409 5e-66
B4PIW8 1082 Ubiquitin carboxyl-termin N/A N/A 0.770 0.282 0.413 2e-65
B4QIS3 988 Ubiquitin carboxyl-termin N/A N/A 0.765 0.307 0.408 6e-65
B3NC86 1085 Ubiquitin carboxyl-termin N/A N/A 0.770 0.282 0.410 6e-65
Q9VRP5 1085 Ubiquitin carboxyl-termin yes N/A 0.768 0.281 0.403 8e-65
B4MLR8 1311 Ubiquitin carboxyl-termin N/A N/A 0.788 0.238 0.403 2e-64
>sp|B4LG38|UBP36_DROVI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila virilis GN=Usp36 PE=3 SV=1 Back     alignment and function desciption
 Score =  259 bits (662), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 211/366 (57%), Gaps = 46/366 (12%)

Query: 37  SSKDSSSNGNSKCLLPKPKEILYSPNKITLGW---QGRVPAGAGLVNAINTCYLNSCLQA 93
           S+++SS+N N    LPKPK +LY    I +GW   + +   GAG++N  NTCYLNS LQA
Sbjct: 153 SNQNSSANPNE---LPKPKRVLYPRENIRIGWKQSERKWQVGAGMLNVGNTCYLNSTLQA 209

Query: 94  LFHIPSFHNWLLNDTEHQTLCE-KQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKK 152
           LFHIP+  NWL+++T H   C   +S     C++CAM KTL   Q+   SA+RP LI  K
Sbjct: 210 LFHIPALANWLVSETSHVENCNISESCGSGGCIICAMAKTLQTTQSNQ-SAVRPFLIYTK 268

Query: 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLR 212
           L+ I +H+   RQED+HEFL +L+E ++K+YL    +  +LD   KETTPI Q+FG YLR
Sbjct: 269 LRQICKHMVVGRQEDAHEFLRFLVEAMEKAYLMRFRNFKELDQLVKETTPISQIFGGYLR 328

Query: 213 TEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDI 272
           +EV C SC+H+S                   +Q F                   +L LDI
Sbjct: 329 SEVRCLSCNHVSI-----------------TFQHF------------------QDLLLDI 353

Query: 273 RQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG 332
           R++ +L+EA   +F++E L  D  Y+CE C +KV ATK+FS+++ P  L +QLKRF+  G
Sbjct: 354 RKADTLEEAFDGYFSRERL-EDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFSMMG 412

Query: 333 LKNSRSVQVPLHLEFGKFM--HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
            K ++ +     ++  +F       +   L Y+LVS V H G S   GHYT IG T +GS
Sbjct: 413 NKLTKQISFKPRIDLSRFAARSPTAAAQPLSYRLVSMVTHLGVSQHCGHYTAIGLTEAGS 472

Query: 391 YHYFDD 396
           Y+ FDD
Sbjct: 473 YYNFDD 478
Required for maintaining multiple types of adult stem cells, including male and female germline, epithelial follicle cell and intestinal stem cells. May function as a transcriptional repressor by continually deubiquiting histone H2B at the promoters of genes critical for cellular differentiation, thereby preventing histone H3 'Lys-4' trimethylation (H3K4).
Drosophila virilis (taxid: 7244)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|B4KXJ5|UBP36_DROMO Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila mojavensis GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B3M3M6|UBP36_DROAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila ananassae GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|Q2LZB1|UBP36_DROPS Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2 Back     alignment and function description
>sp|B4IXE0|UBP36_DROGR Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila grimshawi GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4PIW8|UBP36_DROYA Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila yakuba GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B4QIS3|UBP36_DROSI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila simulans GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|B3NC86|UBP36_DROER Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila erecta GN=Usp36 PE=3 SV=1 Back     alignment and function description
>sp|Q9VRP5|UBP36_DROME Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila melanogaster GN=scny PE=1 SV=2 Back     alignment and function description
>sp|B4MLR8|UBP36_DROWI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila willistoni GN=Usp36 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
328777507 884 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.348 0.459 4e-78
332027218 874 Ubiquitin carboxyl-terminal hydrolase 36 0.790 0.359 0.451 1e-77
350421826 875 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.352 0.456 1e-77
340716721 875 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.352 0.456 1e-77
380012929 884 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.348 0.456 1e-77
307193249 874 Ubiquitin carboxyl-terminal hydrolase 36 0.853 0.387 0.432 9e-77
328723134 920 PREDICTED: ubiquitin carboxyl-terminal h 0.823 0.355 0.424 1e-76
383858607 880 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.35 0.451 1e-75
321479440447 hypothetical protein DAPPUDRAFT_39928 [D 0.851 0.756 0.421 3e-75
156547946 881 PREDICTED: ubiquitin carboxyl-terminal h 0.775 0.349 0.448 1e-74
>gi|328777507|ref|XP_001120426.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/348 (45%), Positives = 214/348 (61%), Gaps = 40/348 (11%)

Query: 51  LPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEH 110
           LP+P   LYSP K++LGW+G  P GAG+ N  NTCYLNS LQALFH+P+  NWLL+D+ H
Sbjct: 99  LPEPTITLYSPKKVSLGWKGTFPVGAGMYNVGNTCYLNSTLQALFHVPALVNWLLSDSHH 158

Query: 111 QTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHE 170
            + CE+  G   ECL CA+ KTL     KSG AI+P  I  KLKLI R +   +QED+HE
Sbjct: 159 TSKCEQNDG-GGECLTCAVAKTLQFSHQKSGCAIKPFYIYNKLKLICRTMVPGQQEDAHE 217

Query: 171 FLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFH 230
           FL YL+EG++K+YL A   ++KLDS SKETTPI Q+FG Y+RTEV C  C H+ST     
Sbjct: 218 FLRYLLEGMEKAYL-ARHKASKLDSYSKETTPINQIFGGYIRTEVKCLQCRHVST----- 271

Query: 231 SRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEY 290
                        +Q F                   +L +DIR++S+LDEAL  +F++E 
Sbjct: 272 ------------TFQHF------------------QDLLVDIRKASTLDEALSSYFSREQ 301

Query: 291 LGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKF 350
           L  +N Y+CE C R+V ATK+FS+++PP VL +QLKRF+  G K S+ +     ++ G +
Sbjct: 302 L-DNNDYKCEACKRRVPATKQFSLERPPKVLCVQLKRFSVLGGKISKHIGFKQTIDMGPY 360

Query: 351 MHCRMSHS--QLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDD 396
           +      S   L YKL+S V H G S + GHYT +   S+G Y+ FDD
Sbjct: 361 LWKEPGESSQSLTYKLMSIVTHMGPSVNCGHYTAVAKVSTGQYYSFDD 408

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332027218|gb|EGI67307.1| Ubiquitin carboxyl-terminal hydrolase 36 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350421826|ref|XP_003492969.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340716721|ref|XP_003396843.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380012929|ref|XP_003690525.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Apis florea] Back     alignment and taxonomy information
>gi|307193249|gb|EFN76140.1| Ubiquitin carboxyl-terminal hydrolase 36 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328723134|ref|XP_001946077.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383858607|ref|XP_003704791.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|321479440|gb|EFX90396.1| hypothetical protein DAPPUDRAFT_39928 [Daphnia pulex] Back     alignment and taxonomy information
>gi|156547946|ref|XP_001604800.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 36-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
UNIPROTKB|B4KXJ5 1185 Usp36 "Ubiquitin carboxyl-term 0.508 0.170 0.449 6.7e-42
UNIPROTKB|B4LG38 1214 Usp36 "Ubiquitin carboxyl-term 0.508 0.166 0.459 5.8e-41
UNIPROTKB|B3M3M6 1091 Usp36 "Ubiquitin carboxyl-term 0.433 0.157 0.485 1.2e-40
UNIPROTKB|B4IXE0 1240 Usp36 "Ubiquitin carboxyl-term 0.508 0.162 0.454 2.6e-40
UNIPROTKB|Q2LZB1 1059 Usp36 "Ubiquitin carboxyl-term 0.498 0.186 0.450 2.9e-39
UNIPROTKB|B4PIW8 1082 Usp36 "Ubiquitin carboxyl-term 0.430 0.158 0.483 3.8e-39
UNIPROTKB|B3NC86 1085 Usp36 "Ubiquitin carboxyl-term 0.430 0.157 0.483 3.9e-39
UNIPROTKB|B4QIS3 988 Usp36 "Ubiquitin carboxyl-term 0.425 0.171 0.477 6.5e-39
UNIPROTKB|B4HUI5 1059 Usp36 "Ubiquitin carboxyl-term 0.425 0.159 0.477 7.7e-39
FB|FBgn0260936 1085 scny "scrawny" [Drosophila mel 0.425 0.155 0.477 8.1e-39
UNIPROTKB|B4KXJ5 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
 Score = 440 (159.9 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
 Identities = 94/209 (44%), Positives = 128/209 (61%)

Query:    51 LPKPKEILYSPNKITLGWQG---RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLND 107
             LPKPK +LY    I +GW+    +   GAG++N  NTCYLNS LQALFHIP+  NWL+++
Sbjct:   171 LPKPKRVLYPRENIRIGWKQSDRKWQVGAGMLNVGNTCYLNSTLQALFHIPALANWLVSE 230

Query:   108 TEHQTLCE-KQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQE 166
             T H   C   +S     C++CAM KTL   Q+   +A+RP LI  KL+ I +H+   RQE
Sbjct:   231 TAHVENCNISESCGSGGCIICAMAKTLQTTQSNQ-TAVRPFLIYTKLRQICKHMVVGRQE 289

Query:   167 DSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIS-T 225
             D+HEFL +L+E ++K+YL    +  +LD   KETTP+ Q+FG YLR+EV C SC+H+S T
Sbjct:   290 DAHEFLRFLVEAMEKAYLMRFRNYKELDQLVKETTPLSQIFGGYLRSEVRCLSCNHVSIT 349

Query:   226 QCLFHSRLDSASKETTPIYQLFGTYLRTE 254
                F   L    K  T + + F  Y   E
Sbjct:   350 FQHFQDLLLDIRKADT-LEEAFDGYFSRE 377
GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS
GO:0005730 "nucleolus" evidence=ISS
GO:0016579 "protein deubiquitination" evidence=ISS
GO:0030718 "germ-line stem cell maintenance" evidence=ISS
GO:0035019 "somatic stem cell maintenance" evidence=ISS
UNIPROTKB|B4LG38 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|B3M3M6 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
UNIPROTKB|B4IXE0 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
UNIPROTKB|Q2LZB1 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|B4PIW8 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|B3NC86 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|B4QIS3 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
UNIPROTKB|B4HUI5 Usp36 "Ubiquitin carboxyl-terminal hydrolase 36" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
FB|FBgn0260936 scny "scrawny" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O74442UBP16_SCHPO3, ., 4, ., 1, 9, ., 1, 20.30570.83620.7264yesN/A
P34547UBPX_CAEEL3, ., 4, ., 1, 9, ., 1, 20.320.76320.7112yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-80
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 8e-53
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 6e-42
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 1e-39
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 6e-36
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-33
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 3e-27
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-26
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 1e-24
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 3e-20
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 9e-20
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-19
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 3e-19
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 3e-17
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 5e-16
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 5e-14
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-11
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-09
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 7e-07
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-06
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 0.002
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.003
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  249 bits (638), Expect = 1e-80
 Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 42/323 (13%)

Query: 75  GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLA 134
           GAGL N  NTC+LNS LQ L H P   N+LL+  EH   C      +  C++CA+   + 
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLS-REHSKDC----CNEGFCMMCALEAHVE 55

Query: 135 HCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLD 194
              A SG    P +    LK I++H    RQED+HEFL YL++ +QK+ L        +D
Sbjct: 56  RALASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVD 115

Query: 195 SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTE 254
            +S+ETT + Q+FG YLR++V C +C H+S                   Y  F       
Sbjct: 116 PSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT-----------------YDPF------- 151

Query: 255 VTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSV 314
                      L+LSLDI+ + SL++AL  F   E L G+N Y+CE+C +KV+A+K+ ++
Sbjct: 152 -----------LDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTI 200

Query: 315 DKPPNVLRLQLKRFNYH-GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGS 373
            + PNVL + LKRF+   G K ++ +  P  L+   +M  + +   LKYKL + ++H G 
Sbjct: 201 HRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS-QPNDGPLKYKLYAVLVHSGF 259

Query: 374 SPDSGHYTCIGSTSSGSYHYFDD 396
           SP SGHY C   +S+G ++  DD
Sbjct: 260 SPHSGHYYCYVKSSNGKWYNMDD 282

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
KOG1865|consensus 545 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
KOG0944|consensus 763 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868|consensus653 100.0
KOG1866|consensus 944 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG1867|consensus492 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1873|consensus877 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1870|consensus842 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
KOG1863|consensus 1093 100.0
KOG4598|consensus 1203 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1864|consensus587 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1872|consensus473 99.96
KOG1871|consensus420 99.96
KOG2026|consensus442 99.95
KOG1275|consensus 1118 99.73
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.86
KOG1864|consensus 587 97.56
KOG3556|consensus724 96.37
KOG1887|consensus806 95.19
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 94.01
PF08715320 Viral_protease: Papain like viral protease; InterP 90.7
>KOG1865|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-70  Score=514.28  Aligned_cols=308  Identities=35%  Similarity=0.650  Sum_probs=284.3

Q ss_pred             CCCCCCCCCcccccCCccccCCCCCCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhH
Q psy1713          46 NSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECL  125 (397)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l  125 (397)
                      ........|...+||..+..+.|.+....++||.|+|||||+|||||||.++|||++||+...+.. .|.+.    .+|+
T Consensus        79 ~~~~~~~~p~k~Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~-~C~~~----~~C~  153 (545)
T KOG1865|consen   79 DSDDGNAPPAKVLFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSR-SCHRA----KFCM  153 (545)
T ss_pred             ccCCCcCCcchhccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhh-hcccc----Ceee
Confidence            344556678889999999889999999999999999999999999999999999999999887765 45422    3899


Q ss_pred             HHHHHHHHHHHHhcCCCccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy1713         126 VCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQ  205 (397)
Q Consensus       126 ~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~  205 (397)
                      +|+|+.++.......+.+++|..|+..|+.+..+|..|+|+||||||++++|.|+..++.+   ....+...++.+++++
T Consensus       154 lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g---~~~~~~~sq~ttlv~~  230 (545)
T KOG1865|consen  154 LCTFQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPG---HKQVDPRSQDTTLVHQ  230 (545)
T ss_pred             ehHHHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCC---CccCCcccccceehhh
Confidence            9999999999888888899999999999999999999999999999999999999998743   3366677788899999


Q ss_pred             ccCeeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhc
Q psy1713         206 LFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHF  285 (397)
Q Consensus       206 ~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~  285 (397)
                      +|+|.++++++|..|++++.+                 +|++                  ++|+|+|....+|+++|++|
T Consensus       231 iFGG~LrS~vkC~~C~~vS~t-----------------yE~~------------------~dltvei~d~~sl~~AL~qF  275 (545)
T KOG1865|consen  231 IFGGYLRSQIKCLHCKGVSDT-----------------YEPY------------------LDLTLEIQDASSLQQALEQF  275 (545)
T ss_pred             hhccchhhceecccCCCcccc-----------------cccc------------------cceEEEeccchhHHHHHHHh
Confidence            999999999999999999999                 9999                  99999999999999999999


Q ss_pred             ccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeeccc-CCCCCCcccccCCceeccCcccccCCCCCcceEE
Q psy1713         286 FAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY-HGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKL  364 (397)
Q Consensus       286 ~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~-~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L  364 (397)
                      ++.|.++|+|+|+|++|++++.|.|++.|.++|+||+||||||.. .+.|+.+.|.||+.|||.+||..+.+ ...+|.|
T Consensus       276 t~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e-~s~~Y~L  354 (545)
T KOG1865|consen  276 TKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNE-GSTVYKL  354 (545)
T ss_pred             hhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCCC-CCceEEE
Confidence            999999999999999999999999999999999999999999954 56899999999999999999995543 4789999


Q ss_pred             EEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713         365 VSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE  397 (397)
Q Consensus       365 ~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs  397 (397)
                      ||||+|.|.....|||+||||..+|.||++||+
T Consensus       355 YavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS  387 (545)
T KOG1865|consen  355 YAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDS  387 (545)
T ss_pred             EEEEEeccccccCCceEEEEEcCCCceEEccCc
Confidence            999999999999999999999999999999996

>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868|consensus Back     alignment and domain information
>KOG1866|consensus Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1867|consensus Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>KOG4598|consensus Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1872|consensus Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information
>KOG2026|consensus Back     alignment and domain information
>KOG1275|consensus Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>KOG3556|consensus Back     alignment and domain information
>KOG1887|consensus Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 3e-20
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-19
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 2e-19
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 3e-15
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 2e-12
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-12
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-12
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 3e-12
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 4e-12
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 2e-11
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 2e-11
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 2e-11
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 3e-11
2f1z_A522 Crystal Structure Of Hausp Length = 522 5e-06
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 6e-06
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 9e-06
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 2e-04
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 153/354 (43%), Gaps = 69/354 (19%)
Query: 71  RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMR 130
           R    +GL+N  NTC+++S LQ L H P F    ++   H   C+ +S  +  C  CA+ 
Sbjct: 137 RRDGLSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQI-HSNNCKVRSPDK--CFSCALD 193
Query: 131 KTL---------AHCQAKSGSAIRPELIIKKLKL---IARHLEHHRQEDSHEFLTYLIEG 178
           K +             + S S  R    I  L     I ++L  + Q+D+HEF  ++I  
Sbjct: 194 KIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQ 253
Query: 179 IQKSYLKAIPSSNKLDSASKETTP--IYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236
           I +SY+  +P++ ++  A+ +     ++ +F   L + + C  C              + 
Sbjct: 254 IHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ-------------NN 300
Query: 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNL 296
           SK T   +                     L+LSLDI+    L E L  F  KE L   N 
Sbjct: 301 SKTTIDPF---------------------LDLSLDIKDKKKLYECLDSFHKKEQLKDFN- 338
Query: 297 YRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRM- 355
           Y C +C    +A K+  + K P+VL LQLKRF +  L N  + ++   +EF  +++ +  
Sbjct: 339 YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEH--LLNGSNRKLDDFIEFPTYLNMKNY 396
Query: 356 -------SHSQ------LKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDD 396
                   HS+      + Y+L+  V H G + + GHY      S G +  F+D
Sbjct: 397 CSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFND 449
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 8e-73
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 7e-69
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 5e-68
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 8e-62
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 9e-61
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 2e-58
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-58
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 5e-51
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-31
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-04
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 6e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  230 bits (588), Expect = 8e-73
 Identities = 78/344 (22%), Positives = 135/344 (39%), Gaps = 42/344 (12%)

Query: 69  QGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCA 128
                  AGL N  NTC++NS LQ L +     ++ L    +       S      LV  
Sbjct: 3   SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQR-LYMRDLHHGSNAHT-ALVEE 60

Query: 129 MRKTL-AHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAI 187
             K +     +     + P     +++  A     + Q+D+ EFL +L++G+    +  +
Sbjct: 61  FAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNE-VNRV 119

Query: 188 PSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLF 247
               K +  + +  P  +      R                         +E + I  LF
Sbjct: 120 TLRPKSNPENLDHLPDDEKGRQMWR---------------------KYLEREDSRIGDLF 158

Query: 248 GTYLRTEVTCNSCSHISN-----LELSLDIRQSS----SLDEALGHFFAKEYLGGDNLYR 298
              L++ +TC  C + S       +LSL I +      +L + +  F  ++ L GD    
Sbjct: 159 VGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPT 218

Query: 299 CEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGL---KNSRSVQVPL-HLEFGKFMHCR 354
           C +C  +    K+FS+ + P +L L LKRF+   +   K +  V  PL  L+  +F    
Sbjct: 219 CCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE- 277

Query: 355 MSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
            + +   Y L +   H G++   GHYT    S  +G +H F+D 
Sbjct: 278 -NTNHAVYNLYAVSNHSGTT-MGGHYTAYCRSPGTGEWHTFNDS 319
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.98
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 96.88
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.74
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 87.51
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-63  Score=477.04  Aligned_cols=290  Identities=24%  Similarity=0.442  Sum_probs=247.0

Q ss_pred             CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHH
Q psy1713          71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII  150 (397)
Q Consensus        71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~  150 (397)
                      ..++.+||.|+||||||||+||+|+++|+|+++++..................+++++|+.+|..+|......++|..|+
T Consensus         4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~   83 (367)
T 2y6e_A            4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK   83 (367)
T ss_dssp             CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred             CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence            45678999999999999999999999999999999765443221112222235699999999999998877899999999


Q ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCC--CCCCC----------------CCCCCccccccCeeec
Q psy1713         151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSN--KLDSA----------------SKETTPIYQLFGTYLR  212 (397)
Q Consensus       151 ~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~--~~~~~----------------~~~~~~i~~~F~g~~~  212 (397)
                      ..++...+.|.+++||||||||.+|||.|++++........  ..+..                ....++|.++|+|++.
T Consensus        84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~  163 (367)
T 2y6e_A           84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK  163 (367)
T ss_dssp             HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred             HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence            99999999999999999999999999999999754322110  00000                1135789999999999


Q ss_pred             ceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC------------------
Q psy1713         213 TEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ------------------  274 (397)
Q Consensus       213 ~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~------------------  274 (397)
                      +.++|..|++++.+                 +|+|                  ++|+|+|+.                  
T Consensus       164 s~~~C~~C~~~s~~-----------------~e~f------------------~~LsL~ip~~~~~~~~~~~~~~~~~~~  208 (367)
T 2y6e_A          164 STLVCPECAKVSVT-----------------FDPF------------------CYLTLPLPLKKDRVMEGPMLQPQKKKK  208 (367)
T ss_dssp             EEEECTTTCCEEEE-----------------EEEE------------------SSEEEECCC------------------
T ss_pred             eeEEeCCCCCEeee-----------------EccC------------------eeEEeeCCCCcCCcceeeeeccccccC
Confidence            99999999999999                 9999                  999998864                  


Q ss_pred             -CCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC-ceeccC
Q psy1713         275 -SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL-HLEFGK  349 (397)
Q Consensus       275 -~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~-~Ldl~~  349 (397)
                       ..+|++||+.|+.+|.++++++|.|++|++++.+.|+..|.++|+||+|||+||.|+.   .|+.+.|.||. .|||.+
T Consensus       209 ~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~  288 (367)
T 2y6e_A          209 TTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE  288 (367)
T ss_dssp             -CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred             CCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence             3589999999999999999999999999999999999999999999999999998753   69999999997 799999


Q ss_pred             cccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713         350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE  397 (397)
Q Consensus       350 ~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs  397 (397)
                      |+..... ....|+|+|||+|.|. .++|||+||+|.. +++||+|||+
T Consensus       289 ~~~~~~~-~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~  335 (367)
T 2y6e_A          289 FVCNLSA-RPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDS  335 (367)
T ss_dssp             GBSCSSS-CCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETT
T ss_pred             hccCCCC-CCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCC
Confidence            9876533 3578999999999997 8999999999986 7899999996
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 3e-39
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 7e-31
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 8e-29
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-21
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 4e-19
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 3e-39
 Identities = 72/339 (21%), Positives = 117/339 (34%), Gaps = 34/339 (10%)

Query: 70  GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAM 129
           G  PA  GL N  NTCY+NS LQ L + P   ++   +     +           +    
Sbjct: 10  GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 69

Query: 130 RKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPS 189
              +          I P+     +  I      + Q+DS E L +L++G+ +   KA   
Sbjct: 70  GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129

Query: 190 SNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGT 249
               +                       N+      +   H+         + I  LF  
Sbjct: 130 KRYKEE----------------------NNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 167

Query: 250 YLRTEVTCNSCSHI-------SNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKC 302
             ++ V C +C            L L L      +L + L  F  +E L  +N + C  C
Sbjct: 168 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC 227

Query: 303 GRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQ--- 359
             + ++ K+  + K P VL + LKRF+Y G    +             +   +   +   
Sbjct: 228 RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNL 287

Query: 360 LKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
            KY L S   H+G   D GHYT    + +   +  FDD 
Sbjct: 288 KKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 325
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 84.43
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-55  Score=417.64  Aligned_cols=269  Identities=23%  Similarity=0.359  Sum_probs=234.7

Q ss_pred             CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHH
Q psy1713          71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII  150 (397)
Q Consensus        71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~  150 (397)
                      ..+|.+||.|+||||||||+||+|+++|+|+++++.......       ....+++++|+++|..++... .++.|..++
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~-------~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~   73 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-------DSSKSVPLALQRVFYELQHSD-KPVGTKKLT   73 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTC-------CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHH
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCC-------cccchHHHHHHHHHHHHhcCC-CCcChHHHH
Confidence            467889999999999999999999999999999986643321       112568999999999888754 678888887


Q ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccc
Q psy1713         151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFH  230 (397)
Q Consensus       151 ~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~  230 (397)
                      ..+.  .+.|..+.||||+||+..||+.|++++....           ..+.+.++|.|.+.+.++|..|++.+.+    
T Consensus        74 ~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------~~~~i~~lF~g~~~~~~~C~~C~~~s~~----  136 (347)
T d1nbfa_          74 KSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------VEGTIPKLFRGKMVSYIQCKEVDYRSDR----  136 (347)
T ss_dssp             HHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------TTTHHHHHHCEEEEEEEEESSSCCEEEE----
T ss_pred             Hhhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccccccceeceEEEEeEEeCCccceeee----
Confidence            7664  4568889999999999999999999874322           3467999999999999999999999999    


Q ss_pred             cccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEE
Q psy1713         231 SRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK  310 (397)
Q Consensus       231 ~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k  310 (397)
                                   .++|                  +.|+|+++...+++++|..++..|.+++++.+.|..| +...+.+
T Consensus       137 -------------~e~f------------------~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k  184 (347)
T d1nbfa_         137 -------------REDY------------------YDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEK  184 (347)
T ss_dssp             -------------EEEE------------------SSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEE
T ss_pred             -------------eccc------------------cccccccccccchhhhHHhhcchheeccccccccccC-cceeccE
Confidence                         9999                  9999999999999999999999999998887777765 5567899


Q ss_pred             EEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEe
Q psy1713         311 RFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGS  385 (397)
Q Consensus       311 ~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr  385 (397)
                      +..|.++|++|+|||+||.|..     .|+...|.||+.|||.+|+..........|+|+|||+|.|. ..+|||+||+|
T Consensus       185 ~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~  263 (347)
T d1nbfa_         185 GVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLN  263 (347)
T ss_dssp             EEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEEEEEEEEC
T ss_pred             EEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCCEEEEeee
Confidence            9999999999999999997643     49999999999999999998877676789999999999997 69999999999


Q ss_pred             cC-CCCeEEecCC
Q psy1713         386 TS-SGSYHYFDDE  397 (397)
Q Consensus       386 ~~-~~~W~~fdDs  397 (397)
                      .+ +++||+|||+
T Consensus       264 ~~~~~~W~~fnD~  276 (347)
T d1nbfa_         264 PKGDGKWCKFDDD  276 (347)
T ss_dssp             TTSSSCCEEEETT
T ss_pred             cCCCCEEEEEECC
Confidence            75 7899999996
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure