Psyllid ID: psy17149

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPSIA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHEEEEEEcccccc
Coil and Loop (DISEMBL)
MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQdcdnilemsvlppvlfhsiettdTIEDYRVLLVDQPSIA
Flexible Loop (DISEMBL)
messkllddeIVQEvvktgtdlrqySKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPSIA
Low Complexity Region (SEG)
MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPSIA
Disordered region (IsUnstruct)
****************************************IQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLV******
Disordered Region (DISOPRED)
******LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPS**
Disordered Region (DISEMBL)
MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPSIA
Disordered Region (DISPRO)
****KLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDTIEDYRVLLVDQPSIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q8C754	723	Vacuolar protein sorting-	yes	N/A	0.612	0.082	0.65	3e-16
Q5TJF0	723	Vacuolar protein sorting-	yes	N/A	0.612	0.082	0.65	3e-16
Q8N1B4	723	Vacuolar protein sorting-	yes	N/A	0.612	0.082	0.65	3e-16
O55166	723	Vacuolar protein sorting-	yes	N/A	0.612	0.082	0.65	3e-15

>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 7   LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
           L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct: 65  LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.
Mus musculus (taxid: 10090)

>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting-associated protein 52 homolog OS=Canis familiaris GN=VPS52 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 7   LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
           L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct: 65  LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Canis familiaris (taxid: 9615)

>sp|Q8N1B4|VPS52_HUMAN Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens GN=VPS52 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 7   LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
           L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct: 65  LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

May be involved in retrograde transport of early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Homo sapiens (taxid: 9606)

>sp|O55166|VPS52_RAT Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus GN=Vps52 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 7   LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
           L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct: 65  LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
340720835	667	PREDICTED: vacuolar protein sorting-asso	0.612	0.089	0.8	4e-20
66564556	667	PREDICTED: vacuolar protein sorting-asso	0.612	0.089	0.8	4e-20
328793258	700	PREDICTED: vacuolar protein sorting-asso	0.612	0.085	0.8	5e-20
380029037	686	PREDICTED: vacuolar protein sorting-asso	0.612	0.087	0.8	5e-20
350397933	667	PREDICTED: vacuolar protein sorting-asso	0.612	0.089	0.8	5e-20
380029035	667	PREDICTED: vacuolar protein sorting-asso	0.612	0.089	0.8	5e-20
322801666	665	hypothetical protein SINV_01553 [Solenop	0.612	0.090	0.8	5e-20
383859698	667	PREDICTED: vacuolar protein sorting-asso	0.612	0.089	0.8	6e-20
307184418	681	Vacuolar protein sorting-associated prot	0.612	0.088	0.783	1e-19
332019154	665	Vacuolar protein sorting-associated prot	0.612	0.090	0.783	2e-19

>gi|340720835|ref|XP_003398835.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Bombus terrestris]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66564556|ref|XP_395807.2| PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 1 [Apis mellifera]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793258|ref|XP_003251853.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Apis mellifera]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029037|ref|XP_003698189.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 2 [Apis florea]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397933|ref|XP_003485035.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Bombus impatiens]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029035|ref|XP_003698188.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 1 [Apis florea]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801666|gb|EFZ22289.1| hypothetical protein SINV_01553 [Solenopsis invicta]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 17 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 76

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859698|ref|XP_003705329.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Megachile rotundata]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 19 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 78

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184418|gb|EFN70827.1| Vacuolar protein sorting-associated protein 52-like protein [Camponotus floridanus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLRQYS+Q+EKELK+VENKSIQDYIKES+NI  LH QI  CDNILE
Sbjct: 15 LGDDVVQEVLKTGTDLRQYSRQIEKELKEVENKSIQDYIKESQNIASLHNQIAACDNILE 74

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019154|gb|EGI59666.1| Vacuolar protein sorting-associated protein 52-like protein [Acromyrmex echinatior]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 54/60 (90%)

Query: 7  LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
          L D++VQEV+KTGTDLR+YS+Q+EKELK+VENKSIQDYIKESENI  LH QI  CDNILE
Sbjct: 17 LGDDVVQEVLKTGTDLREYSRQIEKELKEVENKSIQDYIKESENIASLHNQIAACDNILE 76

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|Q5TJF0	723	VPS52 "Vacuolar protein sortin	0.612	0.082	0.65	2.4e-15
UNIPROTKB|Q8N1B4	723	VPS52 "Vacuolar protein sortin	0.612	0.082	0.65	2.4e-15
MGI|MGI:1330304	723	Vps52 "vacuolar protein sortin	0.612	0.082	0.65	2.4e-15
RGD|3618	723	Vps52 "vacuolar protein sortin	0.612	0.082	0.65	2.4e-15
TAIR|locus:2032343	707	POK "AT1G71270" [Arabidopsis t	0.632	0.087	0.539	4.9e-12
DICTYBASE|DDB_G0271856	798	vps52C "Vps52 / Sac2 family pr	0.663	0.081	0.415	2.5e-08
WB|WBGene00007059	702	vps-52 [Caenorhabditis elegans	0.602	0.084	0.288	0.00066
UNIPROTKB|G5EFV8	702	vps-52 "Vacuolar protein sorti	0.602	0.084	0.288	0.00066

UNIPROTKB|Q5TJF0 VPS52 "Vacuolar protein sorting-associated protein 52 homolog" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query:     7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct:    65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

GO:0010008 "endosome membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q8N1B4 VPS52 "Vacuolar protein sorting-associated protein 52 homolog" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query:     7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct:    65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1330304 Vps52 "vacuolar protein sorting 52 (yeast)" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query:     7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct:    65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0010668 "ectodermal cell differentiation" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048611 "embryonic ectodermal digestive tract development" evidence=IMP

RGD|3618 Vps52 "vacuolar protein sorting 52 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query:     7 LDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             L+DE+V+E +KTG DLR YSKQVE EL+ +E KSI+DYI+ESENI  LH QI  CD +LE
Sbjct:    65 LEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLE 124

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0010668 "ectodermal cell differentiation" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0048611 "embryonic ectodermal digestive tract development" evidence=ISO

TAIR|locus:2032343 POK "AT1G71270" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query:     9 DEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNIL-EM 67
             DE+V  ++ +G  LR+Y+K VE  L+ VE  SI+DYIKES+N+V LH QI+DCD+IL +M
Sbjct:    59 DEVVANILSSGDKLREYAKGVENNLRKVELDSIEDYIKESDNLVSLHDQIRDCDSILSQM 118

Query:    68 SVL 70
               L
Sbjct:   119 ETL 121

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0000139 "Golgi membrane" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0019953 "sexual reproduction" evidence=IMP

DICTYBASE|DDB_G0271856 vps52C "Vps52 / Sac2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query:     2 ESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDC 61
             +S    D E+++E +  G DLRQYSK VE  L  ++  +I DY +E +N + L+ QIQ  
Sbjct:    47 DSISAADQELIKEALIKGYDLRQYSKDVENNLNQMDKMTINDYFQERDNFLTLYTQIQVV 106

Query:    62 DNILE 66
             D +LE
Sbjct:   107 DGVLE 111

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00007059 vps-52 [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00066, P = 0.00066
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query:     8 DDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             D  +V++ + +G  L +    V   L +    S+Q  +  SE + +LH Q+  CDN+ E
Sbjct:    34 DPNLVKKAIASGDGLTESKNDVSTRLSEAHRYSVQQCLDNSEQLAQLHNQLVHCDNVFE 92

GO:0000938 "GARP complex" evidence=IPI

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0019905 "syntaxin binding" evidence=IPI

UNIPROTKB|G5EFV8 vps-52 "Vacuolar protein sorting-associated protein 52 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00066, P = 0.00066
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query:     8 DDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILE 66
             D  +V++ + +G  L +    V   L +    S+Q  +  SE + +LH Q+  CDN+ E
Sbjct:    34 DPNLVKKAIASGDGLTESKNDVSTRLSEAHRYSVQQCLDNSEQLAQLHNQLVHCDNVFE 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 23  0.44    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  96 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.25u 0.12s 16.37t   Elapsed:  00:00:01
  Total cpu time:  16.25u 0.12s 16.37t   Elapsed:  00:00:01
  Start:  Thu Aug 15 13:44:10 2013   End:  Thu Aug 15 13:44:11 2013

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8C754	VPS52_MOUSE	No assigned EC number	0.65	0.6122	0.0829	yes	N/A
Q8N1B4	VPS52_HUMAN	No assigned EC number	0.65	0.6122	0.0829	yes	N/A
Q5TJF0	VPS52_CANFA	No assigned EC number	0.65	0.6122	0.0829	yes	N/A
O55166	VPS52_RAT	No assigned EC number	0.65	0.6122	0.0829	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam04129	511	pfam04129, Vps52, Vps52 / Sac2 family	7e-07

>gnl|CDD|217914 pfam04129, Vps52, Vps52 / Sac2 family

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 36 VENKSIQDYIKESENIVELHYQIQDCDNILE 66
          VE KSIQD I ESEN+  LH QI  CD++LE
Sbjct: 1  VERKSIQDVIDESENLASLHNQIAACDSVLE 31

Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 511

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG1961|consensus	683		99.88
PF04129	508	Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V	99.23
PF08700	87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	86.13
PF06148	133	COG2: COG (conserved oligomeric Golgi) complex com	85.63
PF09763	701	Sec3_C: Exocyst complex component Sec3; InterPro:	83.72

>KOG1961|consensus

Probab=99.88  E-value=5.4e-23  Score=176.46  Aligned_cols=84  Identities=51%  Similarity=0.712  Sum_probs=80.6

Q ss_pred             ccccccChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhcccc
Q psy17149          2 ESSKLLDDEIVQEVVKTGTDLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETT   81 (98)
Q Consensus         2 ~i~~~~~d~vVkeaL~~G~DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~   81 (98)
                      +++++.++++|++||++|.|||+|+++||.+|+++|+.||+||+++++++++||+||.+||+||+|||.||++||++|++
T Consensus        28 ~~~~~~~~e~v~~~lktg~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~s  107 (683)
T KOG1961|consen   28 QLQECLDDELVKEALKTGDDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSS  107 (683)
T ss_pred             HHHHhcchHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchh
Q psy17149         82 DTIE   85 (98)
Q Consensus        82 ~~~~   85 (98)
                      -|-+
T Consensus       108 issD  111 (683)
T KOG1961|consen  108 ISSD  111 (683)
T ss_pred             HHHH
Confidence            7654

>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=99.23  E-value=4.7e-12  Score=105.70  Aligned_cols=48  Identities=48%  Similarity=0.598  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhcccccc
Q psy17149         36 VENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETTDT   83 (98)
Q Consensus        36 ~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~~~   83 (98)
                      +|++||+||++|++++++||+||+.||++|++||+||.+||++|++=+
T Consensus         1 ~e~~si~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS   48 (508)
T PF04129_consen    1 VERESIQDYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSIS   48 (508)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999998643

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi

Probab=86.13  E-value=6.1  Score=24.98  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhh
Q psy17149         22 LRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHS   77 (98)
Q Consensus        22 LreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs   77 (98)
                      |+.-.....++|+.+=-..=.++|.-++.|..|...+..-...|..+...+.++++
T Consensus        31 L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~   86 (87)
T PF08700_consen   31 LRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE   86 (87)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44444455555666555666799999999999999999888888888888877764

Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].

>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex

Probab=85.63  E-value=0.38  Score=33.54  Aligned_cols=56  Identities=27%  Similarity=0.369  Sum_probs=6.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhh
Q psy17149         21 DLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFH   76 (98)
Q Consensus        21 DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQ   76 (98)
                      ||+.|++.++++|-++=+..-+||++=|.+++.+-..|...-.=|.++..-+...+
T Consensus        34 dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~   89 (133)
T PF06148_consen   34 DLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVR   89 (133)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999998888888888776666555544444444333333333

The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.

>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8

Probab=83.72  E-value=3.8  Score=35.68  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHhHHHHHhhccchhhhhhcccc
Q psy17149         21 DLRQYSKQVEKELKDVENKSIQDYIKESENIVELHYQIQDCDNILEMSVLPPVLFHSIETT   81 (98)
Q Consensus        21 DLreYs~qVE~eL~~~E~~SIqDYi~esenl~~Lh~QI~~CD~IL~rME~mL~~FQs~l~~   81 (98)
                      |-..+.+.+.++|..+|.+.|+..+.....+..|-..|..+..=++.||..|..|--.|.+
T Consensus         2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~   62 (701)
T PF09763_consen    2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNS   62 (701)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999877754

This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00