Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 121
cd00014 107
cd00014, CH, Calponin homology domain; actin-bindi
1e-13 smart00033 101
smart00033, CH, Calponin homology domain
4e-11 pfam00307 104
pfam00307, CH, Calponin homology (CH) domain
6e-10 COG5199 178
COG5199, SCP1, Calponin [Cytoskeleton]
3e-09 COG5261 1054
COG5261, IQG1, Protein involved in regulation of c
3e-06
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)
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Score = 61.6 bits (150), Expect = 1e-13
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 8 EQDKEAQAWIETVTGQKFPAGVL-YEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKF 65
Q +E WI V G+ P + + +KDG LC L+N L P + K +FK
Sbjct: 1 SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKR 60
Query: 66 MENINKGLTFI 76
+ENIN L F
Sbjct: 61 LENINLALNFA 71
The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107
>gnl|CDD|214479 smart00033, CH, Calponin homology domain
Back Show alignment and domain information
Score = 55.0 bits (133), Expect = 4e-11
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 11 KEAQAWIETVTGQKFPAGV--LYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKFM 66
K W+ ++ + V D +KDG LC L+N L PG V K+ +S +FK +
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSD-LKDGVALCALLNSLSPGLVDKKKVAASLSRFKKI 59
Query: 67 ENINKGLTFI 76
ENIN L+F
Sbjct: 60 ENINLALSFA 69
Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain
Back Show alignment and domain information
Score = 51.9 bits (125), Expect = 6e-10
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 10 DKEAQAWIETVTGQKFPAGV--LYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKF 65
+K WI V G+ V +ED ++DG LC L+NKL+PG + K+N + +F
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFED-LRDGLALCALLNKLRPGLIDLKKVNKN--RFDK 57
Query: 66 MENINKGLTFI 76
+EN+N L F
Sbjct: 58 LENLNLALEFA 68
The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton]
Back Show alignment and domain information
Score = 51.5 bits (123), Expect = 3e-09
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 3 AKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ 62
+Q KE WIETV G+KF +KDG LC ++N+ P + K S
Sbjct: 8 CPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDI-KYKESKMP 66
Query: 63 FKFMENINKGLTF 75
F MENI+ +
Sbjct: 67 FVQMENISSFING 79
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Back Show alignment and domain information
Score = 44.1 bits (104), Expect = 3e-06
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 12 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKI-NSSGGQFKFMENIN 70
EA+ WIE V + P + +ED++++G L L + P I + QF+ +NIN
Sbjct: 48 EAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNIN 106
Query: 71 KGLTFI 76
L I
Sbjct: 107 AFLDLI 112
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG2046|consensus
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Probab=100.00 E-value=9.6e-33 Score=206.12 Aligned_cols=106 Identities=36% Similarity=0.497 Sum_probs=95.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---
Q psy17185 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA--- 77 (121)
Q Consensus 1 ~~~k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~--- 77 (121)
|++|||++++.++++||+.+.....+...+|.+.|+||+|||+|+|+|+|++++++++|++.|+|||||++|+++|+
T Consensus 18 ~~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~yg 97 (193)
T KOG2046|consen 18 IESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKKYG 97 (193)
T ss_pred hhcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999998666666555899999999999999999999999999999999999999999999998
Q ss_pred -------hccceecCCCh-----hHHHHHHhhhcCCCCCCc
Q psy17185 78 -------ITPQVFSNDSI-----TIHSGTGSHLTQPEWGRE 106 (121)
Q Consensus 78 -------~~~DLfe~kn~-----~L~aL~~~a~~~~~~~gp 106 (121)
|++||||++|+ ||++|++.|++...+.||
T Consensus 98 v~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~ 138 (193)
T KOG2046|consen 98 VPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGP 138 (193)
T ss_pred CChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCC
Confidence 99999999999 999999999976433333
>COG5199 SCP1 Calponin [Cytoskeleton]
Back Show alignment and domain information
Probab=99.93 E-value=6.6e-26 Score=163.80 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=97.4
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh----
Q psy17185 2 AAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA---- 77 (121)
Q Consensus 2 ~~k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~---- 77 (121)
+.++.++.+.+++.||+.++++++.+.-+|.+.|+|||+||++.|...|+-| +..+++++|.|||||+.||+.++
T Consensus 7 ~~~~~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I-~yKeSkmpFVQmenIs~Fin~~~k~~v 85 (178)
T COG5199 7 RCPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDI-KYKESKMPFVQMENISSFINGLKKLRV 85 (178)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccc-eecccCCceeeHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999997755799999999999999999998884 46678999999999999999998
Q ss_pred ------hccceecCCCh-----hHHHHHHhhhc----CCCCCCcccCCCC
Q psy17185 78 ------ITPQVFSNDSI-----TIHSGTGSHLT----QPEWGREKPAACD 112 (121)
Q Consensus 78 ------~~~DLfe~kn~-----~L~aL~~~a~~----~~~~~gp~~~~~~ 112 (121)
||.||||.||. ||++|||+|++ ...+.||+++--+
T Consensus 86 pe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lGP~LatKk 135 (178)
T COG5199 86 PEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLGPHLATKK 135 (178)
T ss_pred CHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccCccccccC
Confidence 99999999998 99999999986 3377888876533
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)
Back Show alignment and domain information
Probab=99.77 E-value=1.3e-18 Score=116.86 Aligned_cols=88 Identities=30% Similarity=0.428 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCCCC-CcchHHHHhhhHHHHHHHHHhhcCCCcccccC-CCCchhHHHHHHHHHHhhh---------
Q psy17185 9 QDKEAQAWIETVTGQKFP-AGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINKGLTFIA--------- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~-~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~-~~~~f~~~eNI~~FL~ac~--------- 77 (121)
.++++.+||+.+++...+ ...+|.+.|+||++||+|+|.+.|+.++..+. +...|.+++||+.|+++|+
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~ 81 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF 81 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence 578999999999998876 45689999999999999999999999976654 6778999999999999999
Q ss_pred hccceecCCCh-----hHHHHHHh
Q psy17185 78 ITPQVFSNDSI-----TIHSGTGS 96 (121)
Q Consensus 78 ~~~DLfe~kn~-----~L~aL~~~ 96 (121)
++.||++.+|. ||++|+++
T Consensus 82 ~~~Dl~~~~n~~~vl~~l~~l~~~ 105 (107)
T cd00014 82 DAEDLVEDGDEKLVLGLLWSLIRK 105 (107)
T ss_pred CHHHHhhCCCceeeHHHHHHHHHh
Confidence 67899988877 78877764
The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
>smart00033 CH Calponin homology domain
Back Show alignment and domain information
Probab=99.70 E-value=2.4e-17 Score=109.55 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCCC-CCcchHHHHhhhHHHHHHHHHhhcCCCccccc--CCCCchhHHHHHHHHHHhhh---------
Q psy17185 10 DKEAQAWIETVTGQKF-PAGVLYEDAIKDGQILCHLINKLKPGSVAKIN--SSGGQFKFMENINKGLTFIA--------- 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~-~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~--~~~~~f~~~eNI~~FL~ac~--------- 77 (121)
++++.+|++.+++... ....+|.+.|+||++||+|+|.+.|+.+.... .+...|.+++||+.|+++|+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 6789999999999875 33357999999999999999999999996544 45668999999999999999
Q ss_pred hccceecC-CCh
Q psy17185 78 ITPQVFSN-DSI 88 (121)
Q Consensus 78 ~~~DLfe~-kn~ 88 (121)
++.||+++ +++
T Consensus 82 ~~~Dl~~~~k~~ 93 (103)
T smart00033 82 EPEDLVEGNKLI 93 (103)
T ss_pred CHHHHhhcchHH
Confidence 78899998 566
Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
>KOG2128|consensus
Back Show alignment and domain information
Probab=99.70 E-value=2.1e-17 Score=148.96 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCccc-ccCCCCchhHHHHHHHHHHhhh----------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAK-INSSGGQFKFMENINKGLTFIA----------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~k-i~~~~~~f~~~eNI~~FL~ac~----------~ 78 (121)
-+|++.|||+++|+++|+..+|.++||+||+|.+|.|.++|+.--. +......|+|.+||+.|++++. +
T Consensus 44 ~eE~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF~~E 123 (1401)
T KOG2128|consen 44 VEEAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIFYPE 123 (1401)
T ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCcccccc
Confidence 3789999999999999998899999999999999999999976533 3344566999999999999998 9
Q ss_pred ccceecCCCh----hHHHHHHhhhc
Q psy17185 79 TPQVFSNDSI----TIHSGTGSHLT 99 (121)
Q Consensus 79 ~~DLfe~kn~----~L~aL~~~a~~ 99 (121)
+.|+||+||| |||||+.+..+
T Consensus 124 ~~Dvy~~kN~p~i~cihaLs~~l~k 148 (1401)
T KOG2128|consen 124 TTDVYEGKNIPVIYCIHALSLYLFK 148 (1401)
T ss_pred hhhhhcCCCCceeeHHHHHHHHHhc
Confidence 9999999999 99999998876
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []
Back Show alignment and domain information
Probab=99.58 E-value=3.6e-15 Score=99.94 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCC--CCCcchHHHHhhhHHHHHHHHHhhcCCCc--ccccCC-CCchhHHHHHHHHHHhhh-------
Q psy17185 10 DKEAQAWIETVTGQK--FPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINSS-GGQFKFMENINKGLTFIA------- 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~--~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~-~~~f~~~eNI~~FL~ac~------- 77 (121)
|+++.+||+++++.. -..-.+|.+.|+||++||+|+|.+.|+.+ .++++. ++.|.+++||+.|+++|+
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 678999999999865 22223689999999999999999999987 455221 278999999999999998
Q ss_pred --hccceecCCCh-----hHHHHHHh
Q psy17185 78 --ITPQVFSNDSI-----TIHSGTGS 96 (121)
Q Consensus 78 --~~~DLfe~kn~-----~L~aL~~~ 96 (121)
.+.||++..|. +|.+|.+.
T Consensus 81 ~~~~~dl~~~~~~~~vl~~l~~l~~~ 106 (108)
T PF00307_consen 81 LLSPEDLVEKGDEKSVLSFLWQLFRY 106 (108)
T ss_dssp TS-HHHHHSTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcCHHHHHHHHHHHHHH
Confidence 78899977665 66666543
It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Back Show alignment and domain information
Probab=99.57 E-value=2.5e-15 Score=131.12 Aligned_cols=88 Identities=27% Similarity=0.469 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccC-CCCchhHHHHHHHHHHhhh----------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINKGLTFIA----------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~-~~~~f~~~eNI~~FL~ac~----------~ 78 (121)
-.|++.||++++++.+|. ..|.+.||+||+|.+|...++|+.+.+|-. .+.+|+|++||+.||.... +
T Consensus 46 v~EaK~WIee~~~~~l~~-~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFE 124 (1054)
T COG5261 46 VSEAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFE 124 (1054)
T ss_pred HHHHHHHHHHHhccCCch-hhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeee
Confidence 368899999999999994 359999999999999999999999988764 6789999999999999998 8
Q ss_pred ccceecCCCh-----hHHHHHHhhh
Q psy17185 79 TPQVFSNDSI-----TIHSGTGSHL 98 (121)
Q Consensus 79 ~~DLfe~kn~-----~L~aL~~~a~ 98 (121)
..||||+||+ |||||+.+..
T Consensus 125 l~DlYekKN~pkViyciHaL~~~ls 149 (1054)
T COG5261 125 LQDLYEKKNIPKVIYCIHALISMLS 149 (1054)
T ss_pred hHhhhccCCcchhHHHHHHHHHHhc
Confidence 8999999999 9999999773
>KOG2996|consensus
Back Show alignment and domain information
Probab=99.46 E-value=9.8e-14 Score=117.97 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHH--hCCC----CCCc--chHHHHhhhHHHHHHHHHhhcCCCc--ccccC--CCCchhHHHHHHHHHHh
Q psy17185 8 EQDKEAQAWIETV--TGQK----FPAG--VLYEDAIKDGQILCHLINKLKPGSV--AKINS--SGGQFKFMENINKGLTF 75 (121)
Q Consensus 8 ~~e~~~~~WIe~v--l~~~----~~~~--~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~--~~~~f~~~eNI~~FL~a 75 (121)
|...++.+|+..+ |-.+ .+.. .+|..+|||||+||+|+|.|.|++| ++|+. ..++|-|..||+.||.+
T Consensus 2 elWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~ 81 (865)
T KOG2996|consen 2 ELWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMF 81 (865)
T ss_pred cHHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHH
Confidence 4678889999975 2221 1222 3799999999999999999999998 78885 35689999999999999
Q ss_pred hh-----------hccceecCCCh-----hHHHHH
Q psy17185 76 IA-----------ITPQVFSNDSI-----TIHSGT 94 (121)
Q Consensus 76 c~-----------~~~DLfe~kn~-----~L~aL~ 94 (121)
|. ++-|||+.+++ ||+.||
T Consensus 82 C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS 116 (865)
T KOG2996|consen 82 CCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLS 116 (865)
T ss_pred HHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhc
Confidence 98 77788888887 555555
>KOG0532|consensus
Back Show alignment and domain information
Probab=99.27 E-value=3.9e-12 Score=108.47 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCC------CCchhHHHHHHHHHHhhh
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSS------GGQFKFMENINKGLTFIA 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~------~~~f~~~eNI~~FL~ac~ 77 (121)
-.++++-||.-+..+++. ||..+|.||||||+|+|.++|.+|..|+.+ -+.-+++.|+.+||++|+
T Consensus 578 ~~QLRk~iEtRLk~sLp~--Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCR 649 (722)
T KOG0532|consen 578 MLQLRKLIETRLKVSLPE--DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACR 649 (722)
T ss_pred HHHHHHHHHHHhcccCch--hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHH
Confidence 356778888888888886 799999999999999999999999888742 234689999999999999
>KOG0046|consensus
Back Show alignment and domain information
Probab=99.08 E-value=1.1e-10 Score=98.42 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHHhCCC--------CCC-cchHHHHhhhHHHHHHHHHhhcCCCc--ccccC--CCCchhHHHHHH
Q psy17185 4 KRNPEQDKEAQAWIETVTGQK--------FPA-GVLYEDAIKDGQILCHLINKLKPGSV--AKINS--SGGQFKFMENIN 70 (121)
Q Consensus 4 k~d~~~e~~~~~WIe~vl~~~--------~~~-~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~--~~~~f~~~eNI~ 70 (121)
-|..++..++..||++.|+.+ +++ ..+|++.++||++||||+|.-.|++| +.||. ...+|...||.+
T Consensus 115 ti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~ 194 (627)
T KOG0046|consen 115 TINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLN 194 (627)
T ss_pred eecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchh
Confidence 467889999999999999854 223 45799999999999999999999999 67873 356899999999
Q ss_pred HHHHhhh---------hccceecCCCh
Q psy17185 71 KGLTFIA---------ITPQVFSNDSI 88 (121)
Q Consensus 71 ~FL~ac~---------~~~DLfe~kn~ 88 (121)
.-|.+++ .+.||-|++.+
T Consensus 195 l~lnSAkAiGc~VvNIga~Dl~eGrph 221 (627)
T KOG0046|consen 195 LALNSAKAIGCTVVNIGAQDLAEGRPH 221 (627)
T ss_pred hHHhhcccccceEEecCchhhhcCCce
Confidence 9999998 89999999998
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins
Back Show alignment and domain information
Probab=98.31 E-value=3.5e-07 Score=60.73 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=45.4
Q ss_pred CCCcchHHHHhhhHHHHHHHHHhhcCCCc--cccc--CCCCchhHHHHHHHHHHhhh
Q psy17185 25 FPAGVLYEDAIKDGQILCHLINKLKPGSV--AKIN--SSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 25 ~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~--~~~~~f~~~eNI~~FL~ac~ 77 (121)
.+.-.+|...++||++||.|++...|+.+ ..|. ++.+.+..+.|+..|.++|.
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~ 66 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQ 66 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHH
Confidence 34445799999999999999999999998 4455 56677999999999999998
>KOG0046|consensus
Back Show alignment and domain information
Probab=98.21 E-value=3.6e-06 Score=71.61 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCc-chHHHHhhhHHHHHHHHHhhcCCCc--ccccCC----CCchhHHHHHHHHHHhhh----
Q psy17185 9 QDKEAQAWIETVTGQKFPAG-VLYEDAIKDGQILCHLINKLKPGSV--AKINSS----GGQFKFMENINKGLTFIA---- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~~~-~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~----~~~f~~~eNI~~FL~ac~---- 77 (121)
+|+.++.||+++ .+.+. .++++.||||.||-++..++.||+| ++++++ +++|+..||.++-.+--+
T Consensus 389 eer~fr~WmNSl---gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~F 465 (627)
T KOG0046|consen 389 EERTFRLWMNSL---GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKF 465 (627)
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcce
Confidence 456778999998 33322 2699999999999999999999988 556543 567999999999887766
Q ss_pred -----hccceecCCCh
Q psy17185 78 -----ITPQVFSNDSI 88 (121)
Q Consensus 78 -----~~~DLfe~kn~ 88 (121)
...|++++.-.
T Consensus 466 SLVgi~G~DI~dGNk~ 481 (627)
T KOG0046|consen 466 SLVGIAGQDIVDGNKT 481 (627)
T ss_pred eeeccccccccccchH
Confidence 88999999765
>KOG0517|consensus
Back Show alignment and domain information
Probab=97.50 E-value=0.00023 Score=67.61 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---------hcc
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA---------ITP 80 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~---------~~~ 80 (121)
+.-+.+|+++.++.---.-.|++..|+||+.|.+|...|.-...+|.++.++.-+++||++.-|++.+ .+.
T Consensus 50 KKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEniGsh 129 (2473)
T KOG0517|consen 50 KKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENIGSH 129 (2473)
T ss_pred HHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccCCcc
Confidence 34567799998864211123699999999999999999998888999999999999999999999888 788
Q ss_pred ceecCCC
Q psy17185 81 QVFSNDS 87 (121)
Q Consensus 81 DLfe~kn 87 (121)
|+.+|..
T Consensus 130 DIVDGN~ 136 (2473)
T KOG0517|consen 130 DIVDGNH 136 (2473)
T ss_pred cccCCcc
Confidence 8988853
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Back Show alignment and domain information
Probab=96.54 E-value=0.0048 Score=52.61 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCC------CCC--cchHHHHhhhHHHHHHHHHhhcCCCc-ccc------cCCCCchhHHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQK------FPA--GVLYEDAIKDGQILCHLINKLKPGSV-AKI------NSSGGQFKFMENINKGLT 74 (121)
Q Consensus 10 e~~~~~WIe~vl~~~------~~~--~~~~~~~LrDGviLC~L~N~l~P~~v-~ki------~~~~~~f~~~eNI~~FL~ 74 (121)
|.|+..-|+.++--+ .|+ ..+|+..-|||.++|+|+|..+|+++ ..+ +..-..|++.||-+.|+.
T Consensus 121 egelt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Ig 200 (612)
T COG5069 121 EGELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIG 200 (612)
T ss_pred hhhHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhc
Confidence 446777777765422 232 23799999999999999999999976 333 223446999999999999
Q ss_pred hhh
Q psy17185 75 FIA 77 (121)
Q Consensus 75 ac~ 77 (121)
..+
T Consensus 201 i~r 203 (612)
T COG5069 201 IAR 203 (612)
T ss_pred hHh
Confidence 999
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain
Back Show alignment and domain information
Probab=94.87 E-value=0.048 Score=36.55 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=42.7
Q ss_pred hHHHHhhhHHHHHHHHHhhcCCCcccccCCCC--chhHHHHHHHHHHhhh-----hccceecCCCh
Q psy17185 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGG--QFKFMENINKGLTFIA-----ITPQVFSNDSI 88 (121)
Q Consensus 30 ~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~--~f~~~eNI~~FL~ac~-----~~~DLfe~kn~ 88 (121)
.++..+|-|.=||.|.|.++|..--.|+.... .=.+-..|-.|+.+|+ ...|+|--.|+
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl 70 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDL 70 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeecc
Confidence 68999999999999999999975445543222 2246788999999998 44445544433
>KOG3631|consensus
Back Show alignment and domain information
Probab=93.03 E-value=0.44 Score=38.35 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=58.0
Q ss_pred CcCCHHHH---HHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHHhhcCCCc--ccccCCCCchhHHHHHHHHHHhh
Q psy17185 3 AKRNPEQD---KEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKFMENINKGLTFI 76 (121)
Q Consensus 3 ~k~d~~~e---~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~~~~f~~~eNI~~FL~ac 76 (121)
++.||..+ .-+..||++++-. -|-- -++.+.|-||.||-+|..++.--.+ ..+. .+.--|..-+..-|+++
T Consensus 82 sr~DpK~~el~kvLi~WiN~~L~~erIvV-r~LeEDlfDGqilqkL~ekL~~~klev~evt--qse~~QkqKLq~Vleav 158 (365)
T KOG3631|consen 82 SRKDPKFEELVKVLIDWINDVLVPERIVV-RSLEEDLFDGQILQKLFEKLAALKLEVAEVT--QSEIGQKQKLQTVLEAV 158 (365)
T ss_pred cccChhHHHHHHHHHHHHHHhhcchhhhH-HhhHHhhhhhHHHHHHHHHHHhhhccchhhh--hhhHHHHHHHHHHHHHH
Confidence 45565444 3457899997653 3322 1689999999999999999873222 2232 23334555566666666
Q ss_pred h-----------hccceecCCCh--hHHHHHHhh
Q psy17185 77 A-----------ITPQVFSNDSI--TIHSGTGSH 97 (121)
Q Consensus 77 ~-----------~~~DLfe~kn~--~L~aL~~~a 97 (121)
. =.+|..-+||+ +|+-|-.+|
T Consensus 159 nr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa 192 (365)
T KOG3631|consen 159 NRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALA 192 (365)
T ss_pred HHHhcCchhhhccchhhhccchHHHHHHHHHHHH
Confidence 5 45688889998 454444444
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function
Back Show alignment and domain information
Probab=92.48 E-value=0.46 Score=34.69 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcc--cccCCCCchhHHHHHHHH-HHhhh
Q psy17185 13 AQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA--KINSSGGQFKFMENINKG-LTFIA 77 (121)
Q Consensus 13 ~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~--ki~~~~~~f~~~eNI~~F-L~ac~ 77 (121)
+.+||.+ +....+.. ++...+.||++++.++....|..|. .+..+.+.-..+.|-..| .+.++
T Consensus 1 l~~WL~~-l~ls~~~~-n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~ 66 (158)
T PF06294_consen 1 LLKWLQS-LDLSRPPK-NIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLK 66 (158)
T ss_dssp HHHHHHH-S--S--SS--HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTG
T ss_pred ChHHHhc-CCCCCCCC-chHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999 44444442 5889999999999999999999873 333344445677888877 66665
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms
Back Show alignment and domain information
Probab=87.14 E-value=1.1 Score=39.69 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc-----ccccCC-CCchh-HHHHHHHHHHhh
Q psy17185 4 KRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV-----AKINSS-GGQFK-FMENINKGLTFI 76 (121)
Q Consensus 4 k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v-----~ki~~~-~~~f~-~~eNI~~FL~ac 76 (121)
.+.++....+..||+.. ...-| ..=...|.|||+|..++..|.|... .+|+.. ...+. .+.|+..-++..
T Consensus 3 ~~~~~l~~~Lv~Wv~tf-~~~~~--~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i 79 (713)
T PF05622_consen 3 DDKMELCDSLVTWVQTF-NLSAP--CSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNI 79 (713)
T ss_dssp ----HHHHHHHHHHTT----SS-----SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHC-CCCCC--cCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 34567788899999884 32222 2236899999999999999999854 244432 22333 567776666666
Q ss_pred h
Q psy17185 77 A 77 (121)
Q Consensus 77 ~ 77 (121)
.
T Consensus 80 ~ 80 (713)
T PF05622_consen 80 K 80 (713)
T ss_dssp H
T ss_pred H
Confidence 5
The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Back Show alignment and domain information
Probab=80.39 E-value=2.5 Score=36.56 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=46.3
Q ss_pred CCHHHHHHHHH---HHHHHhCCCCCCc-chHHHHhhhHHHHHHHHHhh-cCCCc--ccccCC------CCchhHHHHHHH
Q psy17185 5 RNPEQDKEAQA---WIETVTGQKFPAG-VLYEDAIKDGQILCHLINKL-KPGSV--AKINSS------GGQFKFMENINK 71 (121)
Q Consensus 5 ~d~~~e~~~~~---WIe~vl~~~~~~~-~~~~~~LrDGviLC~L~N~l-~P~~v--~ki~~~------~~~f~~~eNI~~ 71 (121)
+|.+-|.+++. |+.+. ++.+. .+++..+|||.+|.+..... .|.+| +.++.. -+.|+..||-+.
T Consensus 373 ~d~e~efear~~Tf~l~~~---~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~ny 449 (612)
T COG5069 373 FDAEGEFEARVFTFWLNSL---DVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENY 449 (612)
T ss_pred cchhhHHHHHHHHHHHHHh---cCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccch
Confidence 55666666654 77766 55443 37999999999998766555 59887 445432 246888888776
Q ss_pred HHHhhh
Q psy17185 72 GLTFIA 77 (121)
Q Consensus 72 FL~ac~ 77 (121)
-...-.
T Consensus 450 avdlG~ 455 (612)
T COG5069 450 AVDLGI 455 (612)
T ss_pred hhhhhh
Confidence 554443
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 121
d1h67a_ 108
a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T
9e-22 d1p2xa_ 159
a.40.1.1 (A:) Ras GTPase-activating-like protein r
4e-17 d1ujoa_ 144
a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta
4e-16 d1pxya_ 500
a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin
2e-05 d1rt8a_ 505
a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin
3e-05 d1rt8a_ 505
a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin
9e-04 d1sh5a1 120
a.40.1.1 (A:8-127) Actin binding domain of plectin
4e-05 d1dxxa1 111
a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens
6e-05
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108
Back Hide information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 80.7 bits (199), Expect = 9e-22
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 66
P+ +++ + WIE TG++ + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRIGDN--FMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 67 ENINKGLTFI 76
ENI L I
Sbjct: 60 ENIGNFLRAI 69
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 70.1 bits (171), Expect = 4e-17
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 11 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENI 69
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NI
Sbjct: 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 73
Query: 70 NKGLTFI 76
NK L FI
Sbjct: 74 NKFLDFI 80
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.3 bits (164), Expect = 4e-16
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 4 KRNPEQDKEAQAWIETVTGQKFPAGVL----YEDAIKDGQILCHLINKLKPGSVAKI--- 56
E ++ WI G ++ +K+G IL L+N L P +
Sbjct: 5 SSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVP 64
Query: 57 -NSSGGQFKFMENINKGLTFI 76
N FK ME + + L
Sbjct: 65 ENPPSMVFKQMEQVAQFLKAA 85
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 40.0 bits (93), Expect = 2e-05
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ----FKFMENINKGLTFIA 77
LYE +KDG +LC LIN PG++ + + + ++ EN L
Sbjct: 33 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAK 83
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.6 bits (92), Expect = 3e-05
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 6 NPEQDKEAQAWI------ETVTGQKFPAGV----LYEDAIKDGQILCHLINKLKPGS--- 52
N E+ +E I + G + P ++ KDG IL LIN P +
Sbjct: 2 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQ-CKDGLILSKLINDSVPDTIDE 60
Query: 53 --VAKINSSGGQFKF--MENINKGLTFIAITPQV-FSN-DSITIHSGTGSHLTQPEW 103
+ K ++ F +EN N + + +N + I G + W
Sbjct: 61 RVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVW 117
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 35.4 bits (81), Expect = 9e-04
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSV--------AKINSSGGQFKFMENINKGLTFI 76
+ + ++DG IL +K+ P +V +FK +EN N +
Sbjct: 298 FFNN-LRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLG 351
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 4e-05
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77
LYED ++DG L L+ L S+ + +F ++N+ L ++
Sbjct: 33 LYED-LRDGHNLISLLEVLSGDSLPREKGR-MRFHKLQNVQIALDYLR 78
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 6e-05
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77
L+ D ++DG+ L L+ L + K S + + N+NK L +
Sbjct: 32 LFSD-LQDGRRLLDLLEGLTGQKLPKEKGS-TRVHALNNVNKALRVLQ 77
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 121
d1h67a_ 108
Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
100.0 d1ujoa_ 144
Transgelin {Mouse (Mus musculus) [TaxId: 10090]}
100.0 d1p2xa_ 159
Ras GTPase-activating-like protein rng2 {Fission y
99.95 d1aoaa1 131
Fimbrin (Plastin), actin-crosslinking domain {Huma
99.43 d1sh5a1 120
Actin binding domain of plectin {Human (Homo sapie
98.98 d1dxxa1 111
Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
98.93 d1wjoa_ 124
Fimbrin (Plastin), actin-crosslinking domain {Huma
98.92 d1pxya_ 500
Fimbrin (Plastin), actin-crosslinking domain {Thal
98.69 d1aoaa2 116
Fimbrin (Plastin), actin-crosslinking domain {Huma
98.63 d1rt8a_ 505
Fimbrin (Plastin), actin-crosslinking domain {Fiss
98.59 d1rt8a_ 505
Fimbrin (Plastin), actin-crosslinking domain {Fiss
98.48 d2qjza1 120
Microtubule-associated protein eb1, N-terminal mic
98.4 d1pxya_ 500
Fimbrin (Plastin), actin-crosslinking domain {Thal
98.27 d1dxxa2 127
Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
97.44 d1bkra_ 108
beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
97.42 d1sh5a2 110
Actin binding domain of plectin {Human (Homo sapie
97.39 d1bhda_ 108
Utrophin {Human (Homo sapiens) [TaxId: 9606]}
97.3 d1wixa_ 164
Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId
93.53
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=3e-34 Score=195.56 Aligned_cols=92 Identities=36% Similarity=0.603 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---------
Q psy17185 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA--------- 77 (121)
Q Consensus 7 ~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~--------- 77 (121)
|+.|++++.||++++|+++++ +|.++||||++||+|+|.|+||+|++++.++++|+++|||+.||++|+
T Consensus 2 p~~e~e~~~Wie~~~~~~~~~--~~~~~L~dGv~LC~L~N~l~pg~i~ki~~~~~~f~~~eNI~~FL~~~~~~Gv~~~~l 79 (108)
T d1h67a_ 2 PQTERQLRVWIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDI 79 (108)
T ss_dssp CCSSHHHHHHHHHHHSCCCCS--CHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGGGS
T ss_pred cHHHHHHHHHHHHHhCCCCch--HHHHHHcCchhHHHHHHHHHhcCCCccCCCcchhHHHHHHHHHHHHHHHhCCCcccC
Confidence 567899999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred -hccceecCCCh-----hHHHHHHhhhcC
Q psy17185 78 -ITPQVFSNDSI-----TIHSGTGSHLTQ 100 (121)
Q Consensus 78 -~~~DLfe~kn~-----~L~aL~~~a~~~ 100 (121)
++.||||++|+ ||++||+.|+++
T Consensus 80 F~~~DL~e~kn~~~V~~cL~aL~r~a~~k 108 (108)
T d1h67a_ 80 FEANDLFENTNHTQVQSTLIALASQAKTK 108 (108)
T ss_dssp CCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHhCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999 999999999863
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-33 Score=198.56 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=98.4
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCCCC----cchHHHHhhhHHHHHHHHHhhcCCCccccc----CCCCchhHHHHHHHHH
Q psy17185 2 AAKRNPEQDKEAQAWIETVTGQKFPA----GVLYEDAIKDGQILCHLINKLKPGSVAKIN----SSGGQFKFMENINKGL 73 (121)
Q Consensus 2 ~~k~d~~~e~~~~~WIe~vl~~~~~~----~~~~~~~LrDGviLC~L~N~l~P~~v~ki~----~~~~~f~~~eNI~~FL 73 (121)
.++|..+.|+++++||++++|+++.. .++|+++||||++||+|+|.|+|++|++++ .+.+.|++||||+.||
T Consensus 3 s~~~~~e~e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~~~~~~f~~~eNI~~FL 82 (144)
T d1ujoa_ 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFL 82 (144)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCCccccCCCcchhHHHHHHHHHHH
Confidence 57899999999999999999999853 247999999999999999999999997764 4667899999999999
Q ss_pred Hhhh----------hccceecCCCh-----hHHHHHHhhhc--CCCCCCcccCCCCC
Q psy17185 74 TFIA----------ITPQVFSNDSI-----TIHSGTGSHLT--QPEWGREKPAACDC 113 (121)
Q Consensus 74 ~ac~----------~~~DLfe~kn~-----~L~aL~~~a~~--~~~~~gp~~~~~~~ 113 (121)
++|+ ++.||||++|+ ||++|+++|++ .+.|.|.+...|+.
T Consensus 83 ~~c~~~Gv~~~~lF~~~DL~e~kn~~~Vi~cL~~L~r~a~~~~~~~~~g~P~~~pk~ 139 (144)
T d1ujoa_ 83 KAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKS 139 (144)
T ss_dssp HHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCSSCCSSCSTTTCSS
T ss_pred HHHHHhCCCcccccchhHHhhcCCHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCCC
Confidence 9999 99999999998 99999999976 46899965555554
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.95 E-value=2.3e-28 Score=175.42 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccC-CCCchhHHHHHHHHHHhhh----------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINKGLTFIA----------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~-~~~~f~~~eNI~~FL~ac~----------~ 78 (121)
.+|+++||++++++++++.++|++.|+|||+||+|+|.+.|+++++++. ++++|+++|||+.||++|+ +
T Consensus 13 ~~e~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~~~~~~~~~~~~~~eNi~~fL~~~~~~gv~~~~~f~ 92 (159)
T d1p2xa_ 13 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFE 92 (159)
T ss_dssp HHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCceecCCCcchHHHHHHHHHHHHHHHHcCCCccccCc
Confidence 4689999999999999887789999999999999999999999998875 6789999999999999999 8
Q ss_pred ccceecCCCh-----hHHHHHHhhhcCCCCCCcccCCCCC
Q psy17185 79 TPQVFSNDSI-----TIHSGTGSHLTQPEWGREKPAACDC 113 (121)
Q Consensus 79 ~~DLfe~kn~-----~L~aL~~~a~~~~~~~gp~~~~~~~ 113 (121)
+.||||++|+ ||++|++++++. ++.||.+..-.+
T Consensus 93 ~~DL~e~~n~~~V~~~l~~l~~~~~~~-~~~~p~~~~~~k 131 (159)
T d1p2xa_ 93 LTDIYEGKNLPKVIYCIHALSYFLSMQ-DLAPPLIKSDEN 131 (159)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHTT-TSSCCCCCCCTT
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHHHHc-CCCCCccCcccc
Confidence 8999999998 999999999975 788888765444
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.2e-13 Score=93.80 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCC--------C-CcchHHHHhhhHHHHHHHHHhhcCCCccc--ccC-CCCchhHHHHHHHH
Q psy17185 5 RNPEQDKEAQAWIETVTGQKF--------P-AGVLYEDAIKDGQILCHLINKLKPGSVAK--INS-SGGQFKFMENINKG 72 (121)
Q Consensus 5 ~d~~~e~~~~~WIe~vl~~~~--------~-~~~~~~~~LrDGviLC~L~N~l~P~~v~k--i~~-~~~~f~~~eNI~~F 72 (121)
|+++++..+.+||+..+.++- . ...+|++.|+||++||+|++.+.|+.+.+ ++. +...|..++|++.+
T Consensus 1 y~e~ek~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~p~~~~~~~~N~~~~ 80 (131)
T d1aoaa1 1 YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLA 80 (131)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcchhccCCCcCHHHHHHHHHHH
Confidence 788889999999999998742 1 23589999999999999999999999843 443 56679999999999
Q ss_pred HHhhh---------hccceecCCC
Q psy17185 73 LTFIA---------ITPQVFSNDS 87 (121)
Q Consensus 73 L~ac~---------~~~DLfe~kn 87 (121)
|++|+ .+.|+++|.-
T Consensus 81 L~~~k~~gi~l~~i~~~DIvdG~~ 104 (131)
T d1aoaa1 81 LNSASAIGCHVVNIGAEDLRAGKP 104 (131)
T ss_dssp HHHHHHTTCCCTTCCHHHHHTTCH
T ss_pred HHHHHHhccccCCCChhhhhcCCH
Confidence 99998 6778888864
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.8e-10 Score=77.48 Aligned_cols=77 Identities=14% Similarity=0.290 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCC--C---CcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh-------
Q psy17185 10 DKEAQAWIETVTGQKF--P---AGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA------- 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~--~---~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~------- 77 (121)
+..+.+||++.|.+.- + .-.+|.+.|+||++||+|++.+.|+.+.+ ..+.+.+..++|++.+|++++
T Consensus 7 ~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~k~eN~~~aL~~~~~~~~~l~ 85 (120)
T d1sh5a1 7 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQVKLV 85 (120)
T ss_dssp HHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCCSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCcccc-CCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 4677899999987641 1 12379999999999999999999998864 346778999999999999998
Q ss_pred --hccceecCCC
Q psy17185 78 --ITPQVFSNDS 87 (121)
Q Consensus 78 --~~~DLfe~kn 87 (121)
.+.|+.++.-
T Consensus 86 ~i~~~dI~~Gn~ 97 (120)
T d1sh5a1 86 NIRNDDIADGNP 97 (120)
T ss_dssp SCCHHHHHTTCH
T ss_pred CCcHHhhccCcH
Confidence 5567777743
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.9e-10 Score=75.49 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCC-CCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---------h
Q psy17185 9 QDKEAQAWIETVTGQK-FPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA---------I 78 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~-~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~---------~ 78 (121)
.+..+.+||++.+... .+.-.+|.+.|+||++||+|++.+.|..+++. .+++.|..++|++..|+.++ .
T Consensus 9 Q~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~~-~~~~r~~~l~N~~~aL~~~k~~~~~~~~i~ 87 (111)
T d1dxxa1 9 QKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNVNKALRVLQNNNVDLVNIG 87 (111)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCC-CCSSHHHHHHHHHHHHHHHHHTTCCCTTCC
T ss_pred HHHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCCC-CCCcHhhHHHHHHHHHHHHHHhCCcccCCC
Confidence 3567889999988532 22334688999999999999999999988653 35678999999999999988 5
Q ss_pred ccceecCCC
Q psy17185 79 TPQVFSNDS 87 (121)
Q Consensus 79 ~~DLfe~kn 87 (121)
+.|+++|.-
T Consensus 88 ~~dI~~Gn~ 96 (111)
T d1dxxa1 88 STDIVDGNH 96 (111)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHcCCH
Confidence 566666653
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=4.7e-10 Score=75.99 Aligned_cols=100 Identities=9% Similarity=0.124 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCC--CCCcchHH-HHhhhHHHHHHHHHhhcCCCc--ccccC-CCCchhHHHHHHHHHHhhh----
Q psy17185 8 EQDKEAQAWIETVTGQK--FPAGVLYE-DAIKDGQILCHLINKLKPGSV--AKINS-SGGQFKFMENINKGLTFIA---- 77 (121)
Q Consensus 8 ~~e~~~~~WIe~vl~~~--~~~~~~~~-~~LrDGviLC~L~N~l~P~~v--~ki~~-~~~~f~~~eNI~~FL~ac~---- 77 (121)
..|+.+.+|++..+.+. -..-.+|. ..|+||++||+|++.+.|+.+ +.++. +...+...+|++..|+.++
T Consensus 7 ~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~~~~~~~~~N~~~al~~~~~lgi 86 (124)
T d1wjoa_ 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGA 86 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHHhcccCCccHhhHHHHHHHHHHHHHHhCC
Confidence 35788899999876431 11112466 489999999999999999998 45554 4567899999999999998
Q ss_pred ----hccceecCCCh-hHHHHHH-hhhcCCCCCCcc
Q psy17185 78 ----ITPQVFSNDSI-TIHSGTG-SHLTQPEWGREK 107 (121)
Q Consensus 78 ----~~~DLfe~kn~-~L~aL~~-~a~~~~~~~gp~ 107 (121)
.+.|+.+++.- .|.-++. +.+......||.
T Consensus 87 ~~~i~~eDI~~gn~k~iL~~i~~L~~~~~~~~~g~~ 122 (124)
T d1wjoa_ 87 RVYALPEDLVEVKPKMVMTVFACLMGRGMKRVSGPS 122 (124)
T ss_dssp SCCCCHHHHHHTCTTTTTHHHHHHHHHSCCCCCCCS
T ss_pred cccCCHHHccCCCchHHHHHHHHHHHHHhhccCCCC
Confidence 77788887543 2222222 344556777774
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.69 E-value=1.2e-08 Score=82.79 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCC--------CCC-cchHHHHhhhHHHHHHHHHhhcCCCccc--ccC--CCCchhHHHHHHHHHHh
Q psy17185 9 QDKEAQAWIETVTGQK--------FPA-GVLYEDAIKDGQILCHLINKLKPGSVAK--INS--SGGQFKFMENINKGLTF 75 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~--------~~~-~~~~~~~LrDGviLC~L~N~l~P~~v~k--i~~--~~~~f~~~eNI~~FL~a 75 (121)
++..+.+||++.|.++ ++. -.++++.|+||++||+|++.+.|+.+.. ++. +.+.|+.+||++..|++
T Consensus 2 qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~ 81 (500)
T d1pxya_ 2 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNS 81 (500)
T ss_dssp THHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHH
Confidence 4677899999999875 122 2589999999999999999999998842 332 35679999999999999
Q ss_pred hh---------hccceecCCCh
Q psy17185 76 IA---------ITPQVFSNDSI 88 (121)
Q Consensus 76 c~---------~~~DLfe~kn~ 88 (121)
++ .+.|+.+|+--
T Consensus 82 ~k~~gi~lvnI~~~dIvdGn~~ 103 (500)
T d1pxya_ 82 AKAVGCSVVNIGTQDLAEGRPH 103 (500)
T ss_dssp HHHTTCCCTTCCHHHHHHTCHH
T ss_pred HHHcCCEEeccChhhhhcCCHH
Confidence 98 67788887654
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6.4e-09 Score=68.81 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHHhCCC-CCCcchHHHHhhhHHHHHHHHHhhcCCCcccc------cC-CCCchhHHHHHHHHHHh
Q psy17185 4 KRNPEQDKEAQAWIETVTGQK-FPAGVLYEDAIKDGQILCHLINKLKPGSVAKI------NS-SGGQFKFMENINKGLTF 75 (121)
Q Consensus 4 k~d~~~e~~~~~WIe~vl~~~-~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki------~~-~~~~f~~~eNI~~FL~a 75 (121)
|..| |+.+.+|++..+... ...-.+|...++||++||.|++.+.|+.+... +. +...+...+|...+++.
T Consensus 7 k~~~--E~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~ 84 (116)
T d1aoaa2 7 KLSP--EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQ 84 (116)
T ss_dssp TSCH--HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHH
T ss_pred cCCH--HHHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCcccccccccccccccCcchHHHHHHHHHHHHHH
Confidence 4455 567899999987532 11223688999999999999999999987532 22 34567899999999999
Q ss_pred hh--------hccceecCC
Q psy17185 76 IA--------ITPQVFSND 86 (121)
Q Consensus 76 c~--------~~~DLfe~k 86 (121)
++ .+.|+.++.
T Consensus 85 ~~~lgi~~~i~~eDIv~gn 103 (116)
T d1aoaa2 85 ADKLGCRQFVTPADVVSGN 103 (116)
T ss_dssp HTTTTCCCSCCHHHHHTTC
T ss_pred HHHhCCCcCcCHHhCcCCC
Confidence 87 666777755
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.59 E-value=4.5e-08 Score=79.30 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHhCCCC--------CC-cchHHHHhhhHHHHHHHHHhhcCCCc--cccc-----CCCCchhHHHHH
Q psy17185 6 NPEQDKEAQAWIETVTGQKF--------PA-GVLYEDAIKDGQILCHLINKLKPGSV--AKIN-----SSGGQFKFMENI 69 (121)
Q Consensus 6 d~~~e~~~~~WIe~vl~~~~--------~~-~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~-----~~~~~f~~~eNI 69 (121)
+.+++..+.+||++.|.++- +. -.++++.|+||++||+|++.+.|+.+ +.++ .+.+.|...+|+
T Consensus 2 ~e~qk~tft~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~~~~~~~~~~leNv 81 (505)
T d1rt8a_ 2 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENN 81 (505)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcchhhhcccccccchhhhhHHHHH
Confidence 46778899999999988652 21 24799999999999999999999987 2232 245679999999
Q ss_pred HHHHHhhh----------hccceecCCCh
Q psy17185 70 NKGLTFIA----------ITPQVFSNDSI 88 (121)
Q Consensus 70 ~~FL~ac~----------~~~DLfe~kn~ 88 (121)
+..|++++ .+.|+.++.-.
T Consensus 82 ~~aL~~~k~~~~~~~~nI~~~dI~dg~~~ 110 (505)
T d1rt8a_ 82 NVVINSAKAMGGISITNIGAGDILEGREH 110 (505)
T ss_dssp HHHHHHHHHHSSCCCSSCCHHHHHTTCHH
T ss_pred HHHHHHHHhcCCceeeccCcccccccchh
Confidence 99998886 56677776543
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.48 E-value=1.1e-07 Score=76.91 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc--ccccC------CCCchhHHHHHHHHHHhhh---
Q psy17185 9 QDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINS------SGGQFKFMENINKGLTFIA--- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~------~~~~f~~~eNI~~FL~ac~--- 77 (121)
.++.+..||++++.... -.++++.|+||++||+|++++.|+.+ ++++. +++.|+.++|++..|+.++
T Consensus 278 ~~~~~~~WiNs~l~~~~--I~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~~r~~~ieN~~~al~~~~~~~ 355 (505)
T d1rt8a_ 278 EARVFTLWLNSLDVTPS--IHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 355 (505)
T ss_dssp HHHHHHHHHHHTTCSSC--CSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCc--HHHHHhccccHHHHHHHHHHhCCCCcCchhcccccccccchhHHHHHHHHHHHHHHHHHhC
Confidence 46778899999865432 23799999999999999999999987 34432 3467899999999999998
Q ss_pred ------hccceecCCCh
Q psy17185 78 ------ITPQVFSNDSI 88 (121)
Q Consensus 78 ------~~~DLfe~kn~ 88 (121)
.+.|+.++.--
T Consensus 356 i~lv~I~~~dIvdGn~k 372 (505)
T d1rt8a_ 356 FSLVGIQGADITDGSRT 372 (505)
T ss_dssp CCCTTCCHHHHHTTCHH
T ss_pred cccccCChHhhhhcChH
Confidence 66677777643
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4.1e-07 Score=61.34 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc--cccc-CCCCchhHHHHHHHHHHhhh--------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV--AKIN-SSGGQFKFMENINKGLTFIA--------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~-~~~~~f~~~eNI~~FL~ac~--------~ 78 (121)
..|+..||+++|+.++.. .+.|.+|++.|+|++.+.||+| .+|+ .++..+..+.|...+-++.. .
T Consensus 5 R~eLL~WiN~~L~~~~~k----iEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k~i~ 80 (120)
T d2qjza1 5 RHDMLAWINESLQLNLTK----IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIP 80 (120)
T ss_dssp HHHHHHHHHHHHTCCCCC----GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHhCCChhh----HHHhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 467999999999998876 3469999999999999999998 5665 57788899999998888876 3
Q ss_pred ccceecCCCh----hHHHHHHhhh
Q psy17185 79 TPQVFSNDSI----TIHSGTGSHL 98 (121)
Q Consensus 79 ~~DLfe~kn~----~L~aL~~~a~ 98 (121)
...|.-++-. .|..+-++..
T Consensus 81 v~kLikgk~qdnleflqWfk~f~d 104 (120)
T d2qjza1 81 VDKLVKGKFQDNFEFVQWFKKFFD 104 (120)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHH
Confidence 3445555422 5555555443
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.27 E-value=4.6e-07 Score=73.35 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcc--cccC--CCCchhHHHHHHHHHHhhh-------
Q psy17185 9 QDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA--KINS--SGGQFKFMENINKGLTFIA------- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~--ki~~--~~~~f~~~eNI~~FL~ac~------- 77 (121)
++..++.||+++.-... -.+|+..|+||++||+|++.+.|+.+. +.+. .++.++.++|++..|+.++
T Consensus 271 ~~ktf~~WiNs~~~~~~--V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~ki~N~~~al~~~~~~gi~l~ 348 (500)
T d1pxya_ 271 DERCYRLWINSLGIDSY--VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLV 348 (500)
T ss_dssp HHHHHHHHHTTTTCSSC--CSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHhccCCCCC--cchHHHHHhhhHHHHHHHHHhcCCCCChhhcCCCcccchHHHHHHHHHHHHHHHHcCCccC
Confidence 35667789998732221 237999999999999999999999884 3333 2457899999999999998
Q ss_pred --hccceecCCC
Q psy17185 78 --ITPQVFSNDS 87 (121)
Q Consensus 78 --~~~DLfe~kn 87 (121)
.+.|+.+++-
T Consensus 349 ~I~~~DI~dG~~ 360 (500)
T d1pxya_ 349 NVAGNDIVQGNK 360 (500)
T ss_dssp SCCHHHHHTTCH
T ss_pred CCChHHhhccch
Confidence 5667777754
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=3.6e-05 Score=51.62 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCC--CCCCcchHHHHhhhHHHHHHHHHhhcCCCccc--ccCCCCchhHHHHHHHHHHhhh
Q psy17185 9 QDKEAQAWIETVTGQ--KFPAGVLYEDAIKDGQILCHLINKLKPGSVAK--INSSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~--~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~k--i~~~~~~f~~~eNI~~FL~ac~ 77 (121)
.++.+.+|.+..+.. .+ .-.+|-.+.+||.+||.|++.++|+.+.. +.. .....+|++.-++.++
T Consensus 17 ~~~~LL~W~~~~~~~y~~v-~v~NFs~sw~DG~a~~aLih~~~P~li~~~~~l~---~~~~~~~~~~a~~~Ae 85 (127)
T d1dxxa2 17 SEKILLSWVRQSTRNYPQV-NVINFTTSWSDGLALNALIHSHRPDLFDWNSVVS---QQSATQRLEHAFNIAR 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCc-cccCCccccccHHHHHHHHHHHCcccccchhhcC---cCCHHHHHHHHHHHHH
Confidence 367889999998843 11 12368889999999999999999998753 222 1246788888888774
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00012 Score=47.48 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCC--CCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh
Q psy17185 9 QDKEAQAWIETVTGQ--KFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~--~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~ 77 (121)
.++.+.+|++.++.. .+ .-.+|-...+||.++|.|++.++|+.+.--.-.. =...+|+...+..++
T Consensus 3 ~k~~LL~W~~~~~~~y~~v-~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~--~~~~~~~~~a~~~ae 70 (108)
T d1bkra_ 3 AKDALLLWCQMKTAGYPNV-NIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK--SNAHYNLQNAFNLAE 70 (108)
T ss_dssp HHHHHHHHHHHHTTTCTTC-CCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCc-CcccCCCcccCcHHHHHHHHHHCcCcccHHhccc--CCHHHHHHHHHHHHH
Confidence 467889999998843 12 1236888999999999999999999874211111 125788888888775
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=4.8e-05 Score=49.81 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCC-CCcchHHHHhhhHHHHHHHHHhhcCCCcc--cccCCCCchhHHHHHHHHHHhhh
Q psy17185 9 QDKEAQAWIETVTGQKF-PAGVLYEDAIKDGQILCHLINKLKPGSVA--KINSSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~-~~~~~~~~~LrDGviLC~L~N~l~P~~v~--ki~~~~~~f~~~eNI~~FL~ac~ 77 (121)
.++.+..|.+.++..-- -.-.+|-.+.+||.+||.|++.++|+.+. .+.. . ...+|++.-++.+.
T Consensus 7 ~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~~-~---~~~~~~~~a~~~Ae 74 (110)
T d1sh5a2 7 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR-Q---TNLENLDQAFSVAE 74 (110)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH-S---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcCc-c---CHHHHHHHHHHHHH
Confidence 56788999999885321 01236888999999999999999999873 2211 1 24688888777664
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=3.1e-05 Score=50.48 Aligned_cols=65 Identities=14% Similarity=0.310 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcchHHHHhhhHHHHHHHHHhhcCCCcc--cccCCCCchhHHHHHHHHHHhhh
Q psy17185 8 EQDKEAQAWIETVTGQ--KFPAGVLYEDAIKDGQILCHLINKLKPGSVA--KINSSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 8 ~~e~~~~~WIe~vl~~--~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~--ki~~~~~~f~~~eNI~~FL~ac~ 77 (121)
..++.+.+|++.++.. .+ .-.+|-...+||.+||.|++.+.|+.+. .+.. -...+|++..++.++
T Consensus 5 ~~~~~LL~W~~~~~~~y~~v-~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~~----~~~~~~~~~af~~a~ 73 (108)
T d1bhda_ 5 NSEKILLSWVRQTTRPYSQV-NVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVK----MSPIERLEHAFSKAQ 73 (108)
T ss_dssp HHHHHHHHHHHHHHTTSTTC-CCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHH----SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCc-CcccCccccccchHHHHHHHHHCccccChhhcCc----CCHHHHHHHHHHHHH
Confidence 3567899999999853 12 1225888899999999999999999874 2211 235788888777764
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.53 E-value=0.061 Score=36.76 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc-----ccccCC-CCch-hHHHHHHHHHHhhh
Q psy17185 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV-----AKINSS-GGQF-KFMENINKGLTFIA 77 (121)
Q Consensus 7 ~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v-----~ki~~~-~~~f-~~~eNI~~FL~ac~ 77 (121)
-+..+.+..||+.. +..-+- .-.+.|.||++|.+.++.|.|... .+++.. ...+ ..+.|+...++..+
T Consensus 8 ~~l~~aLv~W~~tf-~~~~~~--~~~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~nw~lr~~NLk~i~~~i~ 82 (164)
T d1wixa_ 8 LPLCDSLIIWLQTF-KTASPC--QDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGIT 82 (164)
T ss_dssp CHHHHHHHHHHTTC-CCSSCC--CSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHc-CCCccc--CCHHHHhchHHHHHHHHHhCccccCchhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 34678999999985 222121 236899999999999999999753 344432 2233 36788888888776
