Psyllid ID: psy17189

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHEHHHHHcccHEHEEEcccccc
Coil and Loop (DISEMBL)
melycsenlntdrctagrdatmytdSRVMENLItseqhngvppvdyFVSVQTEIKPYMRKIVNSWmqevsfphIFHAFCLSGGAFLIFCMLPNQV
Flexible Loop (DISEMBL)
melycsenlntdrctagrdaTMYTDSRVMENLItseqhngvppvDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQV
Low Complexity Region (SEG)
MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQV
Disordered region (IsUnstruct)
*************CTA**DATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCML****
Disordered Region (DISOPRED)
MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPN**
Disordered Region (DISEMBL)
MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQV
Disordered Region (DISPRO)
*ELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPN**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
P30279	289	G1/S-specific cyclin-D2 O	yes	N/A	0.694	0.228	0.449	2e-08
Q0P5D3	289	G1/S-specific cyclin-D2 O	yes	N/A	0.694	0.228	0.434	3e-08
Q8WNW2	288	G1/S-specific cyclin-D2 O	yes	N/A	0.694	0.229	0.434	5e-08
P53782	291	G1/S-specific cyclin-D2 O	N/A	N/A	0.694	0.226	0.420	2e-07
P30282	292	G1/S-specific cyclin-D3 O	yes	N/A	0.705	0.229	0.434	4e-07
Q3MHH5	292	G1/S-specific cyclin-D3 O	no	N/A	0.705	0.229	0.434	5e-07
P30281	292	G1/S-specific cyclin-D3 O	no	N/A	0.705	0.229	0.434	5e-07
P48961	293	G1/S-specific cyclin-D3 O	yes	N/A	0.705	0.228	0.434	1e-06
P30280	289	G1/S-specific cyclin-D2 O	no	N/A	0.684	0.224	0.405	1e-06
Q04827	288	G1/S-specific cyclin-D2 O	no	N/A	0.684	0.225	0.405	1e-06

>sp|P30279|CCND2_HUMAN G1/S-specific cyclin-D2 OS=Homo sapiens GN=CCND2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R  A RD  +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCHEVDPVRR--AVRDRNLLRDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D2/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.
Homo sapiens (taxid: 9606)

>sp|Q0P5D3|CCND2_BOVIN G1/S-specific cyclin-D2 OS=Bos taurus GN=CCND2 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R     DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCGEVEPVRRAVP--DANLLHDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D2/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Bos taurus (taxid: 9913)

>sp|Q8WNW2|CCND2_PIG G1/S-specific cyclin-D2 OS=Sus scrofa GN=CCND2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R     DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCCEVDPVRRAVP--DANLLHDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D2/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Sus scrofa (taxid: 9823)

>sp|P53782|CCND2_XENLA G1/S-specific cyclin-D2 OS=Xenopus laevis GN=ccnd2 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R  A  D  +  D RV+ NL+T E+   +P   YF  VQ +I+P+MR+
Sbjct: 1  MELLCCEGDTVRR--AQPDPALLLDDRVLHNLLTVEERY-LPQCSYFKCVQKDIQPFMRR 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Essential for the control of the cell cycle at the G1/S (start) transition.

Xenopus laevis (taxid: 8355)

>sp|P30282|CCND3_MOUSE G1/S-specific cyclin-D3 OS=Mus musculus GN=Ccnd3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 1  MELLCCEG-TRHAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQKEIKPHMRK 58

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 59 MLAYWMLEV 67

Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Mus musculus (taxid: 10090)

>sp|Q3MHH5|CCND3_BOVIN G1/S-specific cyclin-D3 OS=Bos taurus GN=CCND3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 1  MELLCCEG-TRHAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 58

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 59 MLAYWMLEV 67

Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Bos taurus (taxid: 9913)

>sp|P30281|CCND3_HUMAN G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 1  MELLCCEG-TRHAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 58

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 59 MLAYWMLEV 67

Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Homo sapiens (taxid: 9606)

>sp|P48961|CCND3_RAT G1/S-specific cyclin-D3 OS=Rattus norvegicus GN=Ccnd3 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 1  MELLCCEGTRLAP-RAGPDPRLLGDQRVLQSLLRLEERY-VPRGSYFQCVQKEIKPHMRK 58

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 59 MLAYWMLEV 67

Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Rattus norvegicus (taxid: 10116)

>sp|P30280|CCND2_MOUSE G1/S-specific cyclin-D2 OS=Mus musculus GN=Ccnd2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R    R+     + RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCCEVDPVRRAVPDRN---LLEDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 56

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 57 MVATWMLEV 65

Regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D2/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Mus musculus (taxid: 10090)

>sp|Q04827|CCND2_RAT G1/S-specific cyclin-D2 OS=Rattus norvegicus GN=Ccnd2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R    R+     + RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCCEVDPVRRAVPDRN---LLEDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 56

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 57 MVATWMLEV 65

Regulatory component of the cyclin D2-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its transcriptional activity. Component of the ternary complex, cyclin D2/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
242003411	208	G1/S-specific cyclin-D2, putative [Pedic	0.705	0.322	0.455	1e-09
170045354	316	cyclin d [Culex quinquefasciatus] gi|167	0.715	0.215	0.492	2e-08
170049324	267	cyclin d [Culex quinquefasciatus] gi|167	0.715	0.254	0.478	5e-08
158300277	323	AGAP012299-PA [Anopheles gambiae str. PE	0.726	0.213	0.454	8e-08
388242712	291	cyclin D2 [Eleutherodactylus coqui]	0.694	0.226	0.492	1e-07
56605898	292	G1/S-specific cyclin-D3 [Gallus gallus]	0.705	0.229	0.478	2e-07
410918709	294	PREDICTED: G1/S-specific cyclin-D2-like	0.694	0.224	0.478	2e-07
327271195	294	PREDICTED: LOW QUALITY PROTEIN: g1/S-spe	0.694	0.224	0.463	2e-07
332249419	406	PREDICTED: G1/S-specific cyclin-D2 [Noma	0.694	0.162	0.449	3e-07
440904299	298	G1/S-specific cyclin-D2, partial [Bos gr	0.694	0.221	0.434	6e-07

>gi|242003411|ref|XP_002422725.1| G1/S-specific cyclin-D2, putative [Pediculus humanus corporis] gi|212505547|gb|EEB09987.1| G1/S-specific cyclin-D2, putative [Pediculus humanus corporis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 2  ELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKI 61
          +L+C E L  D     +D  +++D RV+ NL+  E+   +P  DYF +VQT+IKP+MRKI
Sbjct: 4  DLFCCERLQPDLRKTEKDPVIFSDFRVINNLLNLEKQY-IPSCDYFSNVQTDIKPFMRKI 62

Query: 62 VNSWMQEV 69
          V++WM EV
Sbjct: 63 VSTWMLEV 70

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045354|ref|XP_001850277.1| cyclin d [Culex quinquefasciatus] gi|167868437|gb|EDS31820.1| cyclin d [Culex quinquefasciatus]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 1  MELYCSENL--NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYM 58
          M+L C E +    D   A  D TM  D+RV++NLI+ E+   +PP +YF SVQ +IKP M
Sbjct: 5  MDLVCKEIIYDEVDHQFAEPDPTMIADNRVIQNLISLERLT-IPPCNYFGSVQQDIKPNM 63

Query: 59 RKIVNSWMQEV 69
          RKIV +WM EV
Sbjct: 64 RKIVTTWMLEV 74

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049324|ref|XP_001855287.1| cyclin d [Culex quinquefasciatus] gi|167871136|gb|EDS34519.1| cyclin d [Culex quinquefasciatus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 1  MELYCSENL--NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYM 58
          M+L C E +    D   A  D TM  D+RV++NLI+ E+   +PP +YF +VQ +IKP M
Sbjct: 5  MDLVCKEIIYDEVDHQFAEPDPTMIADNRVIQNLISLERLT-IPPCNYFGTVQQDIKPNM 63

Query: 59 RKIVNSWMQEV 69
          RKIV +WM EV
Sbjct: 64 RKIVTTWMLEV 74

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300277|ref|XP_551892.3| AGAP012299-PA [Anopheles gambiae str. PEST] gi|157013081|gb|EAL38702.3| AGAP012299-PA [Anopheles gambiae str. PEST]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 8/77 (10%)

Query: 3  LYCSENL--NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          L C E +    D   A  D  M TD RV+ NLI  E++  +PP +YFV+VQ +IKP MRK
Sbjct: 13 LSCQEIIYDEPDNRFADPDRHMITDDRVLPNLIRLERYT-IPPCNYFVAVQQDIKPAMRK 71

Query: 61 IVNSWM-----QEVSFP 72
          IV +WM     +E +FP
Sbjct: 72 IVTTWMLEQKCEEQTFP 88

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|388242712|gb|AFK15626.1| cyclin D2 [Eleutherodactylus coqui]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL CSE L+T R  A  D T+  D RV++NL+T E+   +P   YF  VQ +I+P+MRK
Sbjct: 1  MELLCSE-LDTVR-RAQTDPTLLFDDRVLQNLLTVEERY-LPQCSYFKCVQKDIQPFMRK 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Source: Eleutherodactylus coqui

Species: Eleutherodactylus coqui

Genus: Eleutherodactylus

Family: Eleutherodactylidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|56605898|ref|NP_001008453.1| G1/S-specific cyclin-D3 [Gallus gallus] gi|53130850|emb|CAG31754.1| hypothetical protein RCJMB04_10g19 [Gallus gallus]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AGRD  +  D RV++NL++ E+    P V YF  VQ EIKPYMRK
Sbjct: 1  MELLCVETA-ARVPRAGRDPQLLGDRRVLQNLLSQEERYS-PRVSYFQCVQREIKPYMRK 58

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 59 MLAFWMLEV 67

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410918709|ref|XP_003972827.1| PREDICTED: G1/S-specific cyclin-D2-like [Takifugu rubripes]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MELYC E+    R  A  D  ++ D+RV++NL+T E+    P   YF  VQTEI+PYMR+
Sbjct: 1  MELYCLESDVAVR--AQPDPNIFYDARVLQNLLTIEER-FFPQCSYFQQVQTEIQPYMRR 57

Query: 61 IVNSWMQEV 69
          +V  WM EV
Sbjct: 58 MVAGWMHEV 66

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327271195|ref|XP_003220373.1| PREDICTED: LOW QUALITY PROTEIN: g1/S-specific cyclin-D3-like [Anolis carolinensis]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C+E  +  R  A RD  +  D RV+ NL+  E+    P   YF  VQ EI+PYMRK
Sbjct: 1  MELLCAEGGSARR--AKRDPRLLGDRRVLRNLLLQEERYS-PRASYFQCVQKEIQPYMRK 57

Query: 61 IVNSWMQEV 69
          ++ SWM EV
Sbjct: 58 MLASWMLEV 66

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332249419|ref|XP_003273858.1| PREDICTED: G1/S-specific cyclin-D2 [Nomascus leucogenys]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R  A RD  +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 1  MELLCCEVDPVRR--AVRDRNLLQDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 58 MVATWMLEV 66

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440904299|gb|ELR54833.1| G1/S-specific cyclin-D2, partial [Bos grunniens mutus]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E     R     DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct: 3  MELLCGEVEPVRRAVP--DANLLHDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 59

Query: 61 IVNSWMQEV 69
          +V +WM EV
Sbjct: 60 MVATWMLEV 68

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
UNIPROTKB|Q5ZKI9	292	CCND3 "Uncharacterized protein	0.694	0.226	0.485	1.2e-09
UNIPROTKB|P30279	289	CCND2 "G1/S-specific cyclin-D2	0.694	0.228	0.449	1.2e-08
UNIPROTKB|Q0P5D3	289	CCND2 "G1/S-specific cyclin-D2	0.694	0.228	0.434	1.9e-08
ZFIN|ZDB-GENE-050420-354	330	ccnd2b "cyclin D2, b" [Danio r	0.694	0.2	0.434	2.1e-08
UNIPROTKB|Q8WNW2	288	CCND2 "G1/S-specific cyclin-D2	0.694	0.229	0.449	2.5e-08
UNIPROTKB|F1PWA3	322	CCND2 "Uncharacterized protein	0.694	0.204	0.449	3.3e-08
UNIPROTKB|F1MV86	292	CCND3 "G1/S-specific cyclin-D3	0.705	0.229	0.434	1.2e-07
UNIPROTKB|Q3MHH5	292	CCND3 "G1/S-specific cyclin-D3	0.705	0.229	0.434	1.2e-07
UNIPROTKB|P30281	292	CCND3 "G1/S-specific cyclin-D3	0.705	0.229	0.434	1.2e-07
MGI|MGI:88315	292	Ccnd3 "cyclin D3" [Mus musculu	0.705	0.229	0.434	1.2e-07

UNIPROTKB|Q5ZKI9 CCND3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 34/70 (48%), Positives = 42/70 (60%)

Query:     1 MELYCSENL-NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMR 59
             MEL C E      R  AGRD  +  D RV++NL++ E+    P V YF  VQ EIKPYMR
Sbjct:     1 MELLCVETAARVPR--AGRDPQLLGDRRVLQNLLSQEERYS-PRVSYFQCVQREIKPYMR 57

Query:    60 KIVNSWMQEV 69
             K++  WM EV
Sbjct:    58 KMLAFWMLEV 67

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0042098 "T cell proliferation" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

UNIPROTKB|P30279 CCND2 "G1/S-specific cyclin-D2" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E ++  R  A RD  +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct:     1 MELLCHE-VDPVR-RAVRDRNLLRDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query:    61 IVNSWMQEV 69
             +V +WM EV
Sbjct:    58 MVATWMLEV 66

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

UNIPROTKB|Q0P5D3 CCND2 "G1/S-specific cyclin-D2" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E     R     DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct:     1 MELLCGEVEPVRRAVP--DANLLHDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query:    61 IVNSWMQEV 69
             +V +WM EV
Sbjct:    58 MVATWMLEV 66

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

ZFIN|ZDB-GENE-050420-354 ccnd2b "cyclin D2, b" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL+C E     R  A +D  ++ D RV+++L+T E    VP   YF  VQ +I+P+MRK
Sbjct:    35 MELFCLEKDTVVR--AQKDPNIFCDERVLQSLLTVEDRY-VPQGPYFKCVQKDIQPFMRK 91

Query:    61 IVNSWMQEV 69
             +V +WM EV
Sbjct:    92 MVATWMLEV 100

GO:0019901 "protein kinase binding" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|Q8WNW2 CCND2 "G1/S-specific cyclin-D2" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E ++  R  A  DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct:     1 MELLCCE-VDPVR-RAVPDANLLHDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 57

Query:    61 IVNSWMQEV 69
             +V +WM EV
Sbjct:    58 MVATWMLEV 66

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|F1PWA3 CCND2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E ++  R  A  DA +  D RV++NL+T E+   +P   YF  VQ +I+PYMR+
Sbjct:    34 MELLCCE-VDPVR-RAVPDANLLYDDRVLQNLLTIEERY-LPQCSYFKCVQKDIQPYMRR 90

Query:    61 IVNSWMQEV 69
             +V +WM EV
Sbjct:    91 MVATWMLEV 99

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|F1MV86 CCND3 "G1/S-specific cyclin-D3" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct:     1 MELLCCEGTR-HAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 58

Query:    61 IVNSWMQEV 69
             ++  WM EV
Sbjct:    59 MLAYWMLEV 67

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0042098 "T cell proliferation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3MHH5 CCND3 "G1/S-specific cyclin-D3" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct:     1 MELLCCEGTR-HAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 58

Query:    61 IVNSWMQEV 69
             ++  WM EV
Sbjct:    59 MLAYWMLEV 67

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|P30281 CCND3 "G1/S-specific cyclin-D3" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct:     1 MELLCCEGTR-HAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 58

Query:    61 IVNSWMQEV 69
             ++  WM EV
Sbjct:    59 MLAYWMLEV 67

GO:0051301 "cell division" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0042098 "T cell proliferation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=IDA

MGI|MGI:88315 Ccnd3 "cyclin D3" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%)

Query:     1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
             MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct:     1 MELLCCEGTR-HAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQKEIKPHMRK 58

Query:    61 IVNSWMQEV 69
             ++  WM EV
Sbjct:    59 MLAYWMLEV 67

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0000307 "cyclin-dependent protein kinase holoenzyme complex" evidence=ISO

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007165 "signal transduction" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030213 "hyaluronan biosynthetic process" evidence=ISO

GO:0042098 "T cell proliferation" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG0656|consensus	335		99.67
KOG0655|consensus	408		99.63
KOG0654|consensus	359		99.09
KOG0653|consensus	391		99.0
PF00134	127	Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR	98.85
COG5024	440	Cyclin [Cell division and chromosome partitioning]	98.83
cd00043	88	CYCLIN Cyclin box fold. Protein binding domain fun	88.05

>KOG0656|consensus

Probab=99.67  E-value=3e-17  Score=131.48  Aligned_cols=83  Identities=30%  Similarity=0.466  Sum_probs=75.4

Q ss_pred             cccccCCCcccc--ccCCCCc-----------ccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhh
Q psy17189          3 LYCSENLNTDRC--TAGRDAT-----------MYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV   69 (95)
Q Consensus         3 l~c~e~~~~~~~--rA~~DP~-----------l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEV   69 (95)
                      |+|+|. +....  +|..|++           ++.|+|++.+|+++|+. +.|+.+|+.++|++++|.||++.++||++|
T Consensus        11 l~c~E~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~e~~i~~ll~kEe~-~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V   88 (335)
T KOG0656|consen   11 LLCHEE-STSDEQDRADNDESSTESSIPQLGFLLWDERVLANLLEKEEQ-HNPSLDYFLCVQKLILSSMRKQALDWILKV   88 (335)
T ss_pred             cccCCC-CcccccccccCCcccccccccccccccccHHHHHHHHHHHHH-hCCCCchhhhcccccccHHHHHHHHHHHHH
Confidence            799994 44433  4888998           67789999999999999 999999999999999999999999999999


Q ss_pred             hhccccccccccchhhhh
Q psy17189         70 SFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        70 cEE~~~~~e~l~~~~~~~   87 (95)
                      |++|+|+++|++++++.+
T Consensus        89 ~~~~~~~~~~~~LA~NYl  106 (335)
T KOG0656|consen   89 CEEYNFEPLVFLLAMNYL  106 (335)
T ss_pred             HHHhCCchHHHHHHHHHH
Confidence            999999999999999876

>KOG0655|consensus

Probab=99.63  E-value=7.1e-17  Score=130.57  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             ccCCCCccc--CCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchh
Q psy17189         15 TAGRDATMY--TDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGA   84 (95)
Q Consensus        15 rA~~DP~l~--~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~   84 (95)
                      |..+-|.+.  +..+||.+|++.|++ |+.+.++... |+|++|.||+||.|||+||||.||+|+||||+++
T Consensus       101 r~splp~lswgn~~eVW~lM~kkee~-~l~~~~~l~q-Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAv  170 (408)
T KOG0655|consen  101 RLSPLPCLSWGNSKEVWLLMLKKEER-YLRDKHFLEQ-HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAV  170 (408)
T ss_pred             cCCCCccccccCHHHHHHHHHccchh-hhhhhHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344555554  567999999999999 9888766654 9999999999999999999999999999999987

>KOG0654|consensus

Probab=99.09  E-value=2.4e-11  Score=98.35  Aligned_cols=72  Identities=26%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             CCCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189         17 GRDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF   88 (95)
Q Consensus        17 ~~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~   88 (95)
                      ..||..+.  -.++.+|+...|.+..+|.++||+.||+|++|.||+||+||++||.|||+..-++|+++++.+=
T Consensus        93 ~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~d  166 (359)
T KOG0654|consen   93 GEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRD  166 (359)
T ss_pred             ccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHH
Confidence            35665553  2468888888886645799999999999999999999999999999999999999999998764

>KOG0653|consensus

Probab=99.00  E-value=1.6e-10  Score=93.13  Aligned_cols=67  Identities=28%  Similarity=0.283  Sum_probs=56.4

Q ss_pred             CCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         18 RDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        18 ~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      .||.+..  -++++.++...|.. +.|.. |+ ..|++++..||.||+||++||+..|++..||||++|++|
T Consensus       118 ~~~~~~~ey~~di~~~l~~~e~~-~~p~~-~~-~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnli  186 (391)
T KOG0653|consen  118 SDPSMIVEYVQDIFEYLRQLELE-FLPLS-YD-ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLI  186 (391)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHh-hCchh-hh-cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHH
Confidence            3444443  35899999999855 67875 55 459999999999999999999999999999999999987

>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs)

Probab=98.85  E-value=1.2e-09  Score=72.60  Aligned_cols=60  Identities=27%  Similarity=0.394  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189         27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF   88 (95)
Q Consensus        27 rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~   88 (95)
                      +|+.+|++.|.+ +.|+.+|++. |+++++.+|.++++||.++|..+++..+|++.|++++=
T Consensus         1 ~i~~~~~~~e~~-~~~~~~~~~~-~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~d   60 (127)
T PF00134_consen    1 DIFRYLLEKELK-YKPNPDYLEQ-QPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFD   60 (127)
T ss_dssp             HHHHHHHHHHHH-TTCCTTHGTG-TSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-HCcCcccccc-ChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            589999999999 9999999974 88999999999999999999999999999999998763

Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....

>COG5024 Cyclin [Cell division and chromosome partitioning]

Probab=98.83  E-value=1.2e-09  Score=90.56  Aligned_cols=69  Identities=25%  Similarity=0.264  Sum_probs=62.2

Q ss_pred             CCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189         18 RDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF   88 (95)
Q Consensus        18 ~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~   88 (95)
                      .||....  ..+|+++|++.|.. +.|+.+|+.+ |+.+...||+||+||++||+..++|-+|||++++++|=
T Consensus       172 ~d~~mv~Ey~~~Ife~l~k~e~~-~lp~~~yl~k-q~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiD  242 (440)
T COG5024         172 EDPLMVPEYASDIFEYLLKLELI-DLPNPNYLIK-QSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIID  242 (440)
T ss_pred             cCccchHHHHHHHHHHHHHHHHH-hcCcHHHHhh-cchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            5665553  46899999999999 9999999876 99999999999999999999999999999999999874

>cd00043 CYCLIN Cyclin box fold

Probab=88.05  E-value=0.18  Score=29.97  Aligned_cols=31  Identities=16%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             chhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189         58 MRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF   88 (95)
Q Consensus        58 MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~   88 (95)
                      +|....+||.++|+..++.+++...+++++=
T Consensus         1 ~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~   31 (88)
T cd00043           1 MRPTPLDFLRRVAKALGLSPETLTLAVNLLD   31 (88)
T ss_pred             CcchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5778899999999999999999999887753

Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
3g33_B	306	Crystal Structure Of Cdk4CYCLIN D3 Length = 306		3e-08
2w96_A	271	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
2w9z_A	257	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-05

>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 15 MELLCCEG-TRHAPRAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 72
Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 73 MLAYWMLEV 81

>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 2  ELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKI 61
          +L C E     R  A  DA +  D RV+  ++ +E+    P V YF  VQ E+ P MRKI
Sbjct: 4  QLLCCEVETIRR--AYPDANLLND-RVLRAMLKAEE-TCAPSVSYFKCVQKEVLPSMRKI 59
Query: 62 VNSWMQEV 69
          V +WM EV
Sbjct: 60 VATWMLEV 67

>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 19 DATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
          DA +  D RV+  ++ +E+    P V YF  VQ E+ P MRKIV +WM EV
Sbjct: 5  DANLLND-RVLRAMLKAEE-TCAPSVSYFKCVQKEVLPSMRKIVATWMLEV 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2w96_A	271	G1/S-specific cyclin-D1; serine/threonine-protein	5e-12
3g33_B	306	CCND3 protein; Ser/Thr protein kinase, cell cycle,	7e-12
1g3n_C	257	V-cyclin; cyclin-dependent kinase, INK4 inhibitor,	3e-09
2f2c_A	254	Cyclin homolog, V-cyclin; small molecule inhibitor	6e-09
1f5q_B	252	Gamma herpesvirus cyclin; herpesviral cyclin, cycl	1e-08
1w98_B	283	Cyclin E, G1/S-specific cyclin E1; cell cycle, tra	5e-04

>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
           +L C E     R  A  DA +  D RV+  ++ +E+    P V YF  VQ E+ P MRK
Sbjct: 3  HQLLCCEVETIRR--AYPDANLLND-RVLRAMLKAEETC-APSVSYFKCVQKEVLPSMRK 58

Query: 61 IVNSWMQEV 69
          IV +WM EV
Sbjct: 59 IVATWMLEV 67

>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306

 Score = 58.3 bits (141), Expect = 7e-12
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1  MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
          MEL C E        AG D  +  D RV+++L+  E+   VP   YF  VQ EIKP+MRK
Sbjct: 15 MELLCCEGTRHAP-RAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 72

Query: 61 IVNSWMQEV 69
          ++  WM EV
Sbjct: 73 MLAYWMLEV 81

>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 15 TAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
          +   D T+  D R+  N++  E    +     F + Q  +  +MRK++ +WM  V
Sbjct: 9  SGLLDPTLCED-RIFYNILEIEPRF-LTSDSVFGTFQQSLTSHMRKLLGTWMFSV 61

>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 16 AGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
          A  D+T   D RV+ NL   E     P       +QTE+    R I+ +WM  +
Sbjct: 11 AKIDSTTMKDPRVLNNLKLRELLL--PKFTSLWEIQTEVTVDNRTILLTWMHLL 62

>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 14 CTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
               D+++  +    + +  SE+          V+V        RK++ +WM  V
Sbjct: 6  FQGFLDSSLLNEEDCRQMIYRSERE--HDARMVGVNVDQHFTSQYRKVLTTWMFCV 59

>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
            V + ++  E+   +    +       ++P MR I+  W+ EV
Sbjct: 19 EEVWKIMLNKEKTY-LRDQHFL-EQHPLLQPKMRAILLDWLMEV 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3g33_B	306	CCND3 protein; Ser/Thr protein kinase, cell cycle,	99.89
2w96_A	271	G1/S-specific cyclin-D1; serine/threonine-protein	99.86
2f2c_A	254	Cyclin homolog, V-cyclin; small molecule inhibitor	99.76
1g3n_C	257	V-cyclin; cyclin-dependent kinase, INK4 inhibitor,	99.74
1f5q_B	252	Gamma herpesvirus cyclin; herpesviral cyclin, cycl	99.66
1w98_B	283	Cyclin E, G1/S-specific cyclin E1; cell cycle, tra	99.63
2cch_B	260	Cyclin A2, cyclin-A; complex(transferase/cell divi	99.46
2b9r_A	269	Human cyclin B1; cell cycle; 2.90A {Homo sapiens}	99.33
2i53_A	258	Cyclin K; cell cycle, transcription, cyclin BOX, C	97.63
2ivx_A	257	Cyclin-T2; transcription regulation, cell division	97.03
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	96.78
3rgf_B	285	Cyclin-C; protein kinase complex, transferase,tran	95.5
1zp2_A	235	RNA polymerase II holoenzyme cyclin-like subunit;	93.51
1jkw_A	323	Cyclin H; cell cycle, cell division, nuclear prote	86.09

>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.89  E-value=1.9e-24  Score=166.15  Aligned_cols=85  Identities=35%  Similarity=0.535  Sum_probs=61.1

Q ss_pred             CccccccCCCccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccc
Q psy17189          1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCL   80 (95)
Q Consensus         1 m~l~c~e~~~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l   80 (95)
                      |+|+|||+.+... ||.+||+++.|++|+++|++.|++ |.|+++||+.+|++|++.||++++|||+|||+.+++.++|+
T Consensus        15 ~~l~~~e~~~~~~-~a~~dp~l~~~~~i~~~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~   92 (306)
T 3g33_B           15 MELLCCEGTRHAP-RAGPDPRLLGDQRVLQSLLRLEER-YVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVF   92 (306)
T ss_dssp             -----------------------CHHHHHHHHHHHGGG-GSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHH
T ss_pred             cceeeeccccccc-ccCCCCcccchHHHHHHHHHHHHH-hCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHH
Confidence            8999999656667 999999999989999999999999 99999999989999999999999999999999999999999


Q ss_pred             cchhhhh
Q psy17189         81 SGGAFLI   87 (95)
Q Consensus        81 ~~~~~~~   87 (95)
                      +++|+++
T Consensus        93 ~lAv~~l   99 (306)
T 3g33_B           93 PLAMNYL   99 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999876

>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A

Probab=99.86  E-value=9.8e-23  Score=152.73  Aligned_cols=83  Identities=36%  Similarity=0.558  Sum_probs=65.5

Q ss_pred             Cc--cccccCCCccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccc
Q psy17189          1 ME--LYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAF   78 (95)
Q Consensus         1 m~--l~c~e~~~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e   78 (95)
                      ||  |+||| .++.. ||.+||+++ +++++++|++.|.+ |.|+++||..+|++|+++||++++|||++|++.+++.++
T Consensus         1 ~~~~l~c~e-~~~~~-~~~~dp~~~-~~~i~~~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~   76 (271)
T 2w96_A            1 MEHQLLCCE-VETIR-RAYPDANLL-NDRVLRAMLKAEET-CAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEE   76 (271)
T ss_dssp             -----CCCS-SSCC-------------CHHHHHHHHHHHH-TCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCcceeeCC-CCccc-cCCCCCccc-HHHHHHHHHHHHHH-hCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchh
Confidence            77  99999 56666 899999999 67999999999999 999999999899999999999999999999999999999


Q ss_pred             cccchhhhh
Q psy17189         79 CLSGGAFLI   87 (95)
Q Consensus        79 ~l~~~~~~~   87 (95)
                      |+++++.++
T Consensus        77 tl~lAv~~l   85 (271)
T 2w96_A           77 VFPLAMNYL   85 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999876

>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A

Probab=99.76  E-value=2.2e-19  Score=133.41  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ++.. +|..||+++.|++|++ |++.|.+ |.|+++||+..|++|+++||++++|||+|||+.+++.++|++++|+++
T Consensus         6 ~~~~-~~~~dp~l~~~~~i~~-l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~   80 (254)
T 2f2c_A            6 NRLN-RAKIDSTTMKDPRVLN-NLKLREL-LLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSIL   80 (254)
T ss_dssp             --CC-BCCCCHHHHTCHHHHH-HHHHHHT-TSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             CCCC-CCCCCcccccHHHHHH-HHHHHHh-hCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            4556 8999999999999999 9999999 999999998789999999999999999999999999999999999876

>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1

Probab=99.74  E-value=2.5e-19  Score=133.32  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ++.. ++.+||+++.|++|+ +|++.|.+ |.|+++||+.+|++|+++||++++|||+|||+.+++.++|++++|+++
T Consensus         5 ~~~~-~~~~dp~~~~~~~i~-~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~   79 (257)
T 1g3n_C            5 NNPP-SGLLDPTLCEDRIFY-NILEIEPR-FLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLL   79 (257)
T ss_dssp             ------------CHHHHHHH-HHHHHGGG-GCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCc-cCCCCCccccHHHHH-HHHHHHHH-hCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3445 799999999889999 99999999 999999998789999999999999999999999999999999999886

>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1

Probab=99.66  E-value=5.9e-18  Score=127.54  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=63.9

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      .... +|..||+++.| +++++|++.|.+ |.|     ..+|++|+|+||++++|||+|||+++++.++|++++|+++
T Consensus         8 ~~~~-~~~~dp~l~~d-~i~~~l~~~E~~-~~p-----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~l   77 (252)
T 1f5q_B            8 GFLD-SSLLNEEDCRQ-MIYRSEREHDAR-MVG-----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALL   77 (252)
T ss_dssp             SSCS-CTTCCHHHHHH-HHHHHHHHHHHH-HSS-----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             CCCC-cCcCCHHHhHH-HHHHHHHHHHHH-hCc-----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            3456 89999999954 999999999999 988     3579999999999999999999999999999999999886

>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1

Probab=99.63  E-value=1.1e-16  Score=121.16  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             ccCCCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         15 TAGRDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        15 rA~~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ||.+||.++.  +++|+++|++.|.+ |.|+++|++. |++|++.||++++|||.||++.+++.++|+++++.++
T Consensus         6 ~~~~~p~l~~~y~~~i~~~l~~~E~~-~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~l   78 (283)
T 1w98_B            6 RGSPLPVLSWANREEVWKIMLNKEKT-YLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFF   78 (283)
T ss_dssp             --CCSCCCSSSCHHHHHHHHHHHTTT-SCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHH
T ss_pred             CCCCCcchhhcCHHHHHHHHHHHHHH-hCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            7999999984  46999999999999 9999999985 9999999999999999999999999999999999876

>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...

Probab=99.46  E-value=2.2e-14  Score=106.73  Aligned_cols=60  Identities=25%  Similarity=0.283  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        26 ~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ++|+.+|++.|.+ +.|+++|++. |++|++.||++++|||+|||+.+++..+|+++++.++
T Consensus         8 ~di~~~l~~~E~~-~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~l   67 (260)
T 2cch_B            8 EDIHTYLREMEVK-CKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI   67 (260)
T ss_dssp             HHHHHHHHHHHHH-TCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            5899999999999 9999999986 9999999999999999999999999999999999875

>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*

Probab=99.33  E-value=1.2e-13  Score=103.59  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        26 ~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ++|+++|++.|.+ +.|+++|++. | +|++.||++++|||.|||+.+++.++|++++++++
T Consensus         8 ~di~~~l~~~E~~-~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~l   66 (269)
T 2b9r_A            8 KDIYAYLRQLEAA-QAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSII   66 (269)
T ss_dssp             CTTTTTHHHHHHT-TCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4789999999999 9999999986 7 99999999999999999999999999999999876

>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1

Probab=97.63  E-value=3.2e-06  Score=61.82  Aligned_cols=45  Identities=11%  Similarity=0.101  Sum_probs=40.9

Q ss_pred             CCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         43 PVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        43 ~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ++++...++.++.+.||+++++||.+||..+++.++|++.++.++
T Consensus        25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~   69 (258)
T 2i53_A           25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYF   69 (258)
T ss_dssp             CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            456777788999999999999999999999999999999998775

>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*

Probab=97.03  E-value=4.7e-05  Score=55.81  Aligned_cols=42  Identities=10%  Similarity=0.088  Sum_probs=36.4

Q ss_pred             chhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         46 YFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        46 Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ....++.+....||.++++||.+||..+++..+|++.++.++
T Consensus        18 ~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~   59 (257)
T 2ivx_A           18 RRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYM   59 (257)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            344456667789999999999999999999999999998876

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=96.78  E-value=0.00017  Score=56.39  Aligned_cols=42  Identities=7%  Similarity=0.079  Sum_probs=36.4

Q ss_pred             chhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         46 YFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        46 Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ....++.+....||.++++||.+||..+++..+|++.++.++
T Consensus        25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~   66 (358)
T 2pk2_A           25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM   66 (358)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            344456667789999999999999999999999999999876

>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=95.50  E-value=0.0026  Score=47.73  Aligned_cols=34  Identities=3%  Similarity=-0.062  Sum_probs=30.7

Q ss_pred             CCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         54 IKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        54 ItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      -.-.||.++++||.+||..+++..+|++.++.++
T Consensus        38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~   71 (285)
T 3rgf_B           38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYF   71 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3358999999999999999999999999998765

>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}

Probab=93.51  E-value=0.016  Score=41.85  Aligned_cols=29  Identities=10%  Similarity=-0.064  Sum_probs=27.5

Q ss_pred             hhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         59 RKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        59 R~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      |.++++||.+||+.+++..+|++.++.++
T Consensus        28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~   56 (235)
T 1zp2_A           28 TIYQWKVVQTFGDRLRLRQRVLATAIVLL   56 (235)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99999999999999999999999998765

>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A

Probab=86.09  E-value=0.13  Score=39.34  Aligned_cols=35  Identities=6%  Similarity=-0.035  Sum_probs=31.1

Q ss_pred             cCCccchhhhhhhhhhhhhccc--cccccccchhhhh
Q psy17189         53 EIKPYMRKIVNSWMQEVSFPHI--FHAFCLSGGAFLI   87 (95)
Q Consensus        53 dItP~MR~ILvdWmlEVcEE~~--~~~e~l~~~~~~~   87 (95)
                      +-...+|....+|+.+||+.++  +..+|++.++.++
T Consensus        51 eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~   87 (323)
T 1jkw_A           51 HEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYF   87 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3446799999999999999999  9999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1g3nc1	132	a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma	1e-08
d1bu2a1	127	a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim	4e-06
d1f5qb1	141	a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru	9e-06
d2cchb1	128	a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T	8e-04

>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

 Score = 46.8 bits (111), Expect = 1e-08
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 25 DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGA 84
          + R+  N++  E    +     F + Q  +  +MRK++ +WM  V   +      ++   
Sbjct: 3  EDRIFYNILEIEPRF-LTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALAL 61

Query: 85 FLIFCMLPNQV 95
           L+  +L  + 
Sbjct: 62 NLLDRLLLIKQ 72

>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score = 39.9 bits (93), Expect = 4e-06
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVS 70
          RV+ NL   E    +P       +QTE+    R I+ +WM  + 
Sbjct: 1  RVLNNLKLRELL--LPKFTSLWEIQTEVTVDNRTILLTWMHLLC 42

>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Murine herpesvirus 68 [TaxId: 33708]

 Score = 39.2 bits (91), Expect = 9e-06
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 19 DATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAF 78
          D+++  +    + +  SE+ +        V+V        RK++ +WM  V         
Sbjct: 6  DSSLLNEEDCRQMIYRSEREH--DARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNN 63

Query: 79 CL 80
            
Sbjct: 64 VF 65

>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.8 bits (77), Expect = 8e-04
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 42 PPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQ 94
          P V Y    Q +I   MR I+  W+ EV   +      L      I   L + 
Sbjct: 15 PKVGYM-KKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1g3nc1	132	Viral cyclin {Kaposi's sarcoma-associated herpesvi	99.76
d1w98b2	140	G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax	99.68
d2cchb1	128	Cyclin A {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1bu2a1	127	Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}	99.49
d1f5qb1	141	Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]	99.47
d1jkwa1	151	Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606	92.45
d2i53a1	144	Cyclin K {Human (Homo sapiens) [TaxId: 9606]}	91.96
d2ivxa1	143	Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}	89.03

>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.76  E-value=5.8e-20  Score=125.04  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhhhcC
Q psy17189         24 TDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCML   91 (95)
Q Consensus        24 ~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~~~~   91 (95)
                      .|+||++||++.|++ |.|+++||..+|++|+|+||.+++|||.+||..+++..+|++++|.++=-++
T Consensus         2 ~~~~i~~~l~~~E~~-~~p~~~y~~~~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfl   68 (132)
T d1g3nc1           2 CEDRIFYNILEIEPR-FLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLL   68 (132)
T ss_dssp             HHHHHHHHHHHHGGG-GCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHH-HCCChHHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence            367999999999999 9999999999999999999999999999999999999999999999875444

>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-17  Score=114.35  Aligned_cols=69  Identities=14%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             CCCCcccCC--HHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         17 GRDATMYTD--SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        17 ~~DP~l~~d--~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      +|+|+++.+  ++|+.+|++.|.+ |.|+++|+.. |++|+|+||.+|+|||++||..+++..+|++++|.++
T Consensus         1 ~~~p~~~~~~~~dI~~~l~~~E~~-~~~~~~~l~~-q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~ll   71 (140)
T d1w98b2           1 SPLPVLSWANREEVWKIMLNKEKT-YLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFF   71 (140)
T ss_dssp             CCSCCCSSSCHHHHHHHHHHHTTT-SCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHH
T ss_pred             CCCccccccCHHHHHHHHHHHHHh-hCCChHHHhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            478999854  6899999999999 9999999975 9999999999999999999999999999999999887

>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=2.3e-16  Score=105.76  Aligned_cols=60  Identities=25%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189         27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF   88 (95)
Q Consensus        27 rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~   88 (95)
                      +|+.+|++.|.+ |.|+.+|+.. |++|+|.||.+++|||.+||+.+++..+|++++|.++=
T Consensus         1 dI~~~l~~~E~~-~~p~~~~l~~-q~~i~~~~R~~li~W~~~v~~~~~l~~~t~~lAv~llD   60 (128)
T d2cchb1           1 DIHTYLREMEVK-CKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID   60 (128)
T ss_dssp             HHHHHHHHHHHH-TCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhh-hCCCchhhhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            589999999999 9999999985 99999999999999999999999999999999998863

>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

Probab=99.49  E-value=2.2e-15  Score=101.79  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhhh
Q psy17189         27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFC   89 (95)
Q Consensus        27 rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~~   89 (95)
                      ||+++|...| . ..|..+|+..+|++|||.||++|+|||++||..+++..+|++++|.++=-
T Consensus         1 ~~~~~l~~~e-~-~~p~~~~~~~~q~~it~~~R~~lidWl~~v~~~~~l~~eTl~lAv~llDr   61 (127)
T d1bu2a1           1 RVLNNLKLRE-L-LLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDR   61 (127)
T ss_dssp             CCHHHHHHTT-T-SSCCCSSTTTTCSSSCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             ChHHHHHHHH-H-hCCCchHHhhcCCcCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            4688875555 4 67999898889999999999999999999999999999999999988743

>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Murine herpesvirus 68 [TaxId: 33708]

Probab=99.47  E-value=1.3e-15  Score=104.53  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             ccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         15 TAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        15 rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      ||..||++++++++.+.+.+.|.. +.+...|+ .+|++||+.||.+++|||.+||..++++.+|++++|.++
T Consensus         2 ~~~~d~~~~~~~~~~~~i~~~e~~-~~~~~~~~-~~~~~it~~~R~~lvdWm~~v~~~~~l~~etl~lAv~ll   72 (141)
T d1f5qb1           2 QGFLDSSLLNEEDCRQMIYRSERE-HDARMVGV-NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALL   72 (141)
T ss_dssp             CSSCSCTTCCHHHHHHHHHHHHHH-HHHHHSSS-SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHHHHHH-hccccccc-ccCccCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            799999999987777777777766 54445555 479999999999999999999999999999999999875

>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin H (mcs2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.025  Score=36.85  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=36.2

Q ss_pred             HHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccc--cccccccchhhh
Q psy17189         29 MENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHI--FHAFCLSGGAFL   86 (95)
Q Consensus        29 l~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~--~~~e~l~~~~~~   86 (95)
                      +.+....+.. -.|+...+-+.+.+  ..||+..++||.++|..++  +..+|+..++.+
T Consensus        20 ~~~~~~~~~~-~~~~~~~~l~~~ee--~~l~~~~~~~l~~~~~~~k~~l~~~~~~tA~~~   76 (151)
T d1jkwa1          20 FRCKAVANGK-VLPNDPVFLEPHEE--MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMY   76 (151)
T ss_dssp             HHHHHHHTSS-SCTTCTTSCCHHHH--HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhcc-cCcccccCCCHHHH--HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            3344444444 33443333223333  5799999999999999887  668898888754

>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.019  Score=37.05  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=28.5

Q ss_pred             ccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         56 PYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        56 P~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      -.+|..+++||.+++..+++..+|+..++.++
T Consensus        34 ~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~~~   65 (144)
T d2i53a1          34 ARYRREGARFIFDVGTRLGLHYDTLATGIIYF   65 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            35899999999999999999999998887654

>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.033  Score=35.54  Aligned_cols=32  Identities=9%  Similarity=0.085  Sum_probs=28.7

Q ss_pred             ccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189         56 PYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI   87 (95)
Q Consensus        56 P~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~   87 (95)
                      -.+|...++||.++|...++..+|+..++.++
T Consensus        28 ~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~   59 (143)
T d2ivxa1          28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYM   59 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            35899999999999999999999998888664