Psyllid ID: psy17227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
TPSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEIEKN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHcccccccccEEEEccHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHccccHHHHHHccccccHHcccccHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEccccccccEEccccccccccEcccccccEEEccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
TPSRGLLRHIIQQTYnqsvtepeklnvyqpfspfvygetsFDLISRMIDqinatpddvfvdlgSGVGQVVLQVAAATGckicwgvekadlpaKYAEMHTVFKRWMQWYgkrhgefrlvkgdflteEHREKITQASIVFVnnfafgptVDHALKERFQDLkdgarivssksfcplnfritdrnltdggkkvppgrgcvdqtltslstatalpvselhteleipptpaetpySLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEIEKN
Flexible Loop (DISEMBL)
tpsrgllrhIIQQTynqsvtepekLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARivssksfcplnfritdrnltdggkkvppgrgCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLksekykkevedqieiekn
Low Complexity Region (SEG)
TPSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFvdlgsgvgqvvlqvaaaTGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQtltslstatalPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEIEKN
Disordered region (IsUnstruct)
******LRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDG*******RGCVDQTLTSLSTATALPVSELHT**********TPYSLQMLLDILRNQYLAMIERL******************
Disordered Region (DISOPRED)
***RGLLRHIIQQTYNQSV**************FVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQY*************************
Disordered Region (DISEMBL)
TPSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKY*************
Disordered Region (DISPRO)
TPSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TPSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEIEKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q8TEK3	1739	Histone-lysine N-methyltr	yes	N/A	0.694	0.106	0.705	3e-78
Q8INR6	1848	Histone-lysine N-methyltr	yes	N/A	0.746	0.108	0.601	3e-73
Q1DKD8	499	Histone-lysine N-methyltr	N/A	N/A	0.664	0.356	0.406	1e-26
Q2U696	335	Histone-lysine N-methyltr	no	N/A	0.664	0.531	0.379	2e-24
Q5BH89	501	Histone-lysine N-methyltr	yes	N/A	0.660	0.353	0.375	4e-24
Q4WVH4	502	Histone-lysine N-methyltr	yes	N/A	0.660	0.352	0.381	1e-23
Q4P2W8	798	Histone-lysine N-methyltr	N/A	N/A	0.660	0.221	0.376	2e-23
Q6C4Y5	492	Histone-lysine N-methyltr	yes	N/A	0.660	0.359	0.353	3e-23
Q7SB74	531	Histone-lysine N-methyltr	N/A	N/A	0.638	0.322	0.394	3e-22
P0CN15	644	Histone-lysine N-methyltr	N/A	N/A	0.548	0.228	0.384	3e-21

>sp|Q8TEK3|DOT1L_HUMAN Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Homo sapiens GN=DOT1L PE=1 SV=2

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 156/187 (83%), Gaps = 1/187 (0%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+FVD
Sbjct: 102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQVAAAT CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281

Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 282 RNLSDIG 288

Histone methyltransferase. Methylates 'Lys-79' of histone H3. Nucleosomes are preferred as substrate compared to free histones. Binds to DNA.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8INR6|DOT1L_DROME Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Drosophila melanogaster GN=gpp PE=1 SV=2

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 161/206 (78%), Gaps = 6/206 (2%)

Query: 6   LLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSG 65
           LLRHI+Q  YN +V +P+KLN Y+PFSP VYGETS++L+ +M+  +  + +D F+DLGSG
Sbjct: 112 LLRHILQLVYNAAVLDPDKLNQYEPFSPEVYGETSYELVQQMLKHVTVSKEDTFIDLGSG 171

Query: 66  VGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLT 124
           VGQVVLQ+A +   K C G+EKAD PA+YAE M  +F+++M W+GKR  E++L+KGDFL 
Sbjct: 172 VGQVVLQMAGSFPLKTCIGIEKADTPARYAERMDVIFRQYMGWFGKRFCEYKLIKGDFLV 231

Query: 125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLT 184
           +EHRE IT +++VFVNNFAFGPTVDH LKERF DL+DGAR+VSSKSFCPLNFRITDRNL+
Sbjct: 232 DEHRENITSSTLVFVNNFAFGPTVDHQLKERFADLRDGARVVSSKSFCPLNFRITDRNLS 291

Query: 185 DGG-----KKVPPGRGCVDQTLTSLS 205
           D G      ++PP +G V  T   +S
Sbjct: 292 DIGTIMHVSEIPPLKGSVSWTCKPVS 317

Histone methyltransferase. Methylates 'Lys-79' of histone H3. Required for Polycomb Group (PcG) and trithorax Group (trxG) maintenance of expression. Also involved in telomeric silencing but do not in centric heterochromatin. Probably participates in pairing sensitivity.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q1DKD8|DOT1_COCIM Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Coccidioides immitis (strain RS) GN=DOT1 PE=3 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 6   LLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGS 64
           L+  I+ Q Y+++V+   + L  Y+  S  VYGE    L+S++  +     D VFVDLGS
Sbjct: 274 LVERILTQVYSRTVSPRVDSLRQYENGSDNVYGELLPRLVSKIFAETRLKSDQVFVDLGS 333

Query: 65  GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRLVKGDFL 123
           GVG VVLQ A   GC+  WG E        AE+    FK   + +G + G+  L +GDFL
Sbjct: 334 GVGNVVLQAALEIGCE-SWGCEMMQNACDLAELQEKEFKTRCRLWGLQPGQTHLKRGDFL 392

Query: 124 TEEHREKITQ-ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRN 182
             +   KI Q A +V +NN AF P ++H L   F D+K+G +IVS KSF P   RI  RN
Sbjct: 393 EVDSVGKILQKADVVLINNQAFTPELNHKLVNYFLDMKEGCQIVSLKSFVPAGHRIQSRN 452

Query: 183 LT 184
           L 
Sbjct: 453 LN 454

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Coccidioides immitis (strain RS) (taxid: 246410)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q2U696|DOT1_ASPOR Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dot1 PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 6   LLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGS 64
           L+  I+ Q Y+++V+   E L  Y+  +  VYGE     IS +  +       VFVDLGS
Sbjct: 110 LVERILTQIYSRTVSPRVESLRQYENGTDNVYGELLPRFISTIFKETGLKSGQVFVDLGS 169

Query: 65  GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRLVKGDFL 123
           GVG VVLQ A   GC+  WG E      + AE+  T F+   + +G   G+  LV+GDFL
Sbjct: 170 GVGNVVLQAALEIGCE-SWGCEMMQNACELAELQQTEFRARCRLWGIAPGKTHLVRGDFL 228

Query: 124 TEEHR-EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRN 182
            E+   + + +A ++ +NN AF P +++ L   F D+K+G +IVS KSF P   +I  RN
Sbjct: 229 KEQSIIDVLKRADVILINNQAFTPQLNNELINHFLDMKEGCQIVSLKSFVPAAHKIQSRN 288

Query: 183 LT 184
           L 
Sbjct: 289 LN 290

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q5BH89|DOT1_EMENI Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dot1 PE=3 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 4/181 (2%)

Query: 7   LRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSG 65
           +  I+ Q Y+++V+   + L  Y+  +  VYGE     IS +  +     + VFVDLGSG
Sbjct: 277 VERILTQIYSRTVSPRVDSLRQYENGTDNVYGELLPRFISTIFKETGLKSNHVFVDLGSG 336

Query: 66  VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV-FKRWMQWYGKRHGEFRLVKGDFLT 124
           VG VVLQ A   GC+  WG E        AE+    FK   + +G   G+  LV+GDFL 
Sbjct: 337 VGNVVLQAALEIGCE-SWGCEMMQNACDLAELQQAEFKARCRLWGIAPGKTHLVRGDFLK 395

Query: 125 EEHR-EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNL 183
           E+   + + +A +V +NN AF P +++ L   F D+K+G +IVS KSF P+  +I  RNL
Sbjct: 396 EQSIIDVLKRADVVLINNQAFTPQLNNELINHFLDMKEGCQIVSLKSFVPVGHKIQSRNL 455

Query: 184 T 184
            
Sbjct: 456 N 456

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q4WVH4|DOT1_ASPFU Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dot1 PE=3 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 4/181 (2%)

Query: 6   LLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGS 64
           L+  I+ Q Y ++V+   E L  Y+  +  VYGE     IS +  +       VFVDLGS
Sbjct: 277 LVERILTQIYARTVSPRVESLRRYENGTDNVYGELLPRFISTIFKETRLKSGHVFVDLGS 336

Query: 65  GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRLVKGDFL 123
           GVG VVLQ A   GC+  WG E        AE+  T F+   + +G   G+  LV+GDFL
Sbjct: 337 GVGNVVLQAALEIGCE-SWGCEMMANACDLAELQQTEFRARCRLWGIAPGKTNLVRGDFL 395

Query: 124 TEEHR-EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRN 182
            E+   + + +A +V +NN AF P +++ +   F D+K+G +IVS KSF P   +I  RN
Sbjct: 396 QEQSIIDVLKRADVVLINNQAFTPQLNNEIINHFLDMKEGCQIVSLKSFVPAGHKIQSRN 455

Query: 183 L 183
           L
Sbjct: 456 L 456

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q4P2W8|DOT1_USTMA Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Ustilago maydis (strain 521 / FGSC 9021) GN=DOT1 PE=3 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 97/186 (52%), Gaps = 9/186 (4%)

Query: 5   GLLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLG 63
           G+ R I  Q Y + V    E+L  YQ FS  VYGE     +S +       P+ VFVDLG
Sbjct: 524 GIWRLIQDQVYARVVGPRVEELGRYQAFSDNVYGELLPRFMSEIAQLTLLGPEKVFVDLG 583

Query: 64  SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFK--RWMQWYGKRHGEFRLVKGD 121
           SGVG +++Q +  TG +  +G E   +PA  A    V    RW  W  +        +GD
Sbjct: 584 SGVGNLLIQTSLQTGAE-AYGCEMMRIPASLASQQVVEAQLRWAAWGLRGGSAIEAWQGD 642

Query: 122 FLTEEH---REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRI 178
           F   +H   R+ + +A +V VNN+AF P  +  L   F DL DGA++VS K F P +FR+
Sbjct: 643 F--GDHGGVRDVLKRADVVLVNNYAFLPKTNENLSLLFLDLPDGAKVVSLKPFVPPDFRL 700

Query: 179 TDRNLT 184
           T R L+
Sbjct: 701 TQRTLS 706

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q6C4Y5|DOT1_YARLI Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DOT1 PE=3 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 6   LLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGS 64
           L   ++ Q Y++ V+ E + L  Y+ FS  VYGE     +S +  + +  P  VFVDLGS
Sbjct: 266 LAYFLLNQVYSRIVSPESKSLRDYKAFSNNVYGELMPPFMSTVFQKTDLQPSSVFVDLGS 325

Query: 65  GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV-FKRWMQWYGKRHGEFRLVKGDFL 123
           GVG   LQ A   GC+  WG E     +  AE   +      + +G + G+  LV   F+
Sbjct: 326 GVGNCTLQAALEVGCE-SWGCEVMTNASSLAEKQKIELYSRAKMFGIKTGDIHLVASSFV 384

Query: 124 -TEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRN 182
             +E    I++A ++ VNN+AF  T++  L + F DLK+G +IVS KSF P+   I++ N
Sbjct: 385 HNDEVHSAISRADVLLVNNYAFDGTLNAHLLDMFLDLKEGCKIVSLKSFVPVGHVISEHN 444

Query: 183 L 183
           +
Sbjct: 445 I 445

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7SB74|DOT1_NEUCR Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dot-1 PE=3 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 95/175 (54%), Gaps = 4/175 (2%)

Query: 4   RGLLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDL 62
           R L+  I+ Q Y+++V    E L  YQ  S  VYGE +   IS ++++ N T D VFVDL
Sbjct: 319 RELVDFILDQVYDRTVAPRVELLAKYQNGSDNVYGELNHPFISDILERTNLTSDKVFVDL 378

Query: 63  GSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGD 121
           GSGVG V LQ A   GC+  WG E  +     AE  +  F    + +G + G+ RL +GD
Sbjct: 379 GSGVGNVTLQAALEIGCE-SWGCEMMENACNLAEAQYDEFLARCRLWGVKPGKVRLERGD 437

Query: 122 FLTEEH-REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLN 175
           F   E   E + +A +V VNN AF   ++  L   F DLK G +I+S K+F   N
Sbjct: 438 FRKNEKILEVLKRADVVLVNNQAFTSQLNDNLVSMFLDLKIGCKIISLKTFVHDN 492

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|P0CN15|DOT1_CRYNB Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DOT1 PE=3 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 4/151 (2%)

Query: 35  VYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKY 94
            YGE     +S++I+Q    PD VFVDLGSGVG  VLQ +   G +  +G E   +PA  
Sbjct: 441 AYGELRHAFMSKIIEQTKLGPDSVFVDLGSGVGNCVLQASLQAGSR-SYGFELLPVPAHC 499

Query: 95  AEMHT--VFKRWMQWYGKRHGEFRLVKGDF-LTEEHREKITQASIVFVNNFAFGPTVDHA 151
           A +    V +RW  W  K + +  + +GDF + +E   ++ +A +V VNN  F  +++  
Sbjct: 500 ARLQVREVQRRWAMWALKGNLDVEVHEGDFRVHKEVGRRLREADVVLVNNEVFPSSLNMD 559

Query: 152 LKERFQDLKDGARIVSSKSFCPLNFRITDRN 182
           L + F DLK+GA+IVS K F P  FR+ + N
Sbjct: 560 LADMFLDLKEGAKIVSLKPFVPEGFRMNESN 590

Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
189233748	1345	PREDICTED: similar to histone h3 methylt	0.742	0.147	0.712	1e-85
345495305	1281	PREDICTED: histone-lysine N-methyltransf	0.742	0.155	0.721	2e-85
242019952	1674	histone H3 methyltransferase, putative [	0.742	0.118	0.721	3e-85
340713903	1182	PREDICTED: histone-lysine N-methyltransf	0.742	0.168	0.721	4e-85
350421144	1182	PREDICTED: histone-lysine N-methyltransf	0.742	0.168	0.721	4e-85
332027373	1328	Histone-lysine N-methyltransferase, H3 l	0.742	0.149	0.726	7e-85
345495303	1444	PREDICTED: histone-lysine N-methyltransf	0.694	0.128	0.770	8e-85
345495307	1430	PREDICTED: histone-lysine N-methyltransf	0.694	0.130	0.770	1e-84
322785205	642	hypothetical protein SINV_16303 [Solenop	0.742	0.309	0.726	1e-84
383863663	1324	PREDICTED: histone-lysine N-methyltransf	0.742	0.150	0.721	1e-84

>gi|189233748|ref|XP_001813884.1| PREDICTED: similar to histone h3 methyltransferase [Tribolium castaneum] gi|270014969|gb|EFA11417.1| hypothetical protein TcasGA2_TC013593 [Tribolium castaneum]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 146/205 (71%), Positives = 176/205 (85%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYN +VT+PEKLN Y+PFSP VYGETS+DL+ +MIDQI+ T DDVF+D
Sbjct: 104 PSRGLLRHILQQTYNAAVTDPEKLNQYEPFSPEVYGETSYDLVCQMIDQIDVTSDDVFID 163

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CK+C+G+E+A++P++YAE M+  F+ WM WYGKR+GE++L++ 
Sbjct: 164 LGSGVGQVVLQMAAATPCKVCFGIERAEVPSRYAEAMNKYFRTWMSWYGKRYGEYKLIRS 223

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFLTEEHREKI QA+IVFVNNFAFGP VDH LKERF DLKDGARIVSSKSFCPLNFRITD
Sbjct: 224 DFLTEEHREKINQATIVFVNNFAFGPAVDHQLKERFADLKDGARIVSSKSFCPLNFRITD 283

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 284 RNLSDIGTIMHVSEMTPMKGSVSWT 308

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495305|ref|XP_003427478.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific isoform 2 [Nasonia vitripennis]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQ++ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQVDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P+KYAE M   F++W+ WYGKR GE+RL+KG
Sbjct: 161 LGSGVGQVVLQMAAATFCKICIGVERADVPSKYAESMEVNFRKWLNWYGKRCGEYRLIKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 281 RNLSDIGTIMHVSEMSPLKGSVSWT 305

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019952|ref|XP_002430422.1| histone H3 methyltransferase, putative [Pediculus humanus corporis] gi|212515552|gb|EEB17684.1| histone H3 methyltransferase, putative [Pediculus humanus corporis]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQ YNQ+VT+PEKLN Y+PFSP VYGETS+DLI +MIDQI  T DD+FVD
Sbjct: 113 PSRGLLRHILQQVYNQAVTDPEKLNQYEPFSPEVYGETSYDLICQMIDQIEITSDDIFVD 172

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CK+C+GVEKA++P++YAE M+  FK+WM WYGK++GE+ L+KG
Sbjct: 173 LGSGVGQVVLQMAAATPCKVCFGVEKAEVPSRYAEDMNKNFKKWMGWYGKKYGEYHLIKG 232

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL  EHREKI  A+IVFVNNFAFGP VDH+LKERF DLKDGARIVSSKSFCPLNFRITD
Sbjct: 233 DFLKAEHREKIVSATIVFVNNFAFGPNVDHSLKERFADLKDGARIVSSKSFCPLNFRITD 292

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 293 RNLSDIGTIMHVSEMSPLKGSVSWT 317

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713903|ref|XP_003395474.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like isoform 3 [Bombus terrestris]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQI+ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQIDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P++YA+ M   F++W+ WYGKR GE+RLVKG
Sbjct: 161 LGSGVGQVVLQMAAATLCKICIGVERADVPSRYAQSMEVNFRKWLNWYGKRCGEYRLVKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 281 RNLSDIGTIMHVSEMSPLKGSVSWT 305

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421144|ref|XP_003492748.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like isoform 2 [Bombus impatiens]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQI+ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQIDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P++YA+ M   F++W+ WYGKR GE+RLVKG
Sbjct: 161 LGSGVGQVVLQMAAATLCKICIGVERADVPSRYAQSMEVNFRKWLNWYGKRCGEYRLVKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 281 RNLSDIGTIMHVSEMSPLKGSVSWT 305

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027373|gb|EGI67456.1| Histone-lysine N-methyltransferase, H3 lysine-79 specific [Acromyrmex echinatior]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQI+ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQIDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P+KYA+ M   F++W+ WYGKR GE+RLVKG
Sbjct: 161 LGSGVGQVVLQMAAATLCKICIGVERADVPSKYAQSMEINFRKWLNWYGKRCGEYRLVKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 281 RNLSDIGTIMHVSEMSPLKGSVSWT 305

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495303|ref|XP_001601090.2| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific isoform 1 [Nasonia vitripennis]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 167/187 (89%), Gaps = 1/187 (0%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQ++ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQVDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P+KYAE M   F++W+ WYGKR GE+RL+KG
Sbjct: 161 LGSGVGQVVLQMAAATFCKICIGVERADVPSKYAESMEVNFRKWLNWYGKRCGEYRLIKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 281 RNLSDIG 287

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495307|ref|XP_003427479.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific isoform 3 [Nasonia vitripennis]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 167/187 (89%), Gaps = 1/187 (0%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQ++ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQVDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P+KYAE M   F++W+ WYGKR GE+RL+KG
Sbjct: 161 LGSGVGQVVLQMAAATFCKICIGVERADVPSKYAESMEVNFRKWLNWYGKRCGEYRLIKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 281 RNLSDIG 287

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785205|gb|EFZ11915.1| hypothetical protein SINV_16303 [Solenopsis invicta]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQI+ T DDVFVD
Sbjct: 75  PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQIDVTEDDVFVD 134

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P+KYA+ M   F++W+ WYGKR GE+RLVKG
Sbjct: 135 LGSGVGQVVLQMAAATLCKICIGVERADVPSKYAQSMEINFRKWLNWYGKRCGEYRLVKG 194

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 195 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 254

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 255 RNLSDIGTIMHVSEMSPLKGSVSWT 279

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863663|ref|XP_003707299.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Megachile rotundata]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 174/205 (84%), Gaps = 6/205 (2%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PSRGLLRHI+QQTYNQ+V EP+KLN Y+PFSP VYGETS++L+ +MIDQI+ T DDVFVD
Sbjct: 101 PSRGLLRHILQQTYNQAVVEPDKLNQYEPFSPEVYGETSYELVCQMIDQIDVTEDDVFVD 160

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQ+AAAT CKIC GVE+AD+P++YA+ M   F++W+ WYGKR GE+RLVKG
Sbjct: 161 LGSGVGQVVLQMAAATLCKICIGVERADVPSRYAQSMEINFRKWLNWYGKRCGEYRLVKG 220

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL +EHRE IT A+IVFVNNFAFGPTVDH LKERF DL+DGARIVSSKSFCPLNFRITD
Sbjct: 221 DFLADEHRESITGATIVFVNNFAFGPTVDHQLKERFADLRDGARIVSSKSFCPLNFRITD 280

Query: 181 RNLTDGG-----KKVPPGRGCVDQT 200
           RNL+D G      ++ P +G V  T
Sbjct: 281 RNLSDIGTIMHVSEMSPLKGSVSWT 305

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
FB|FBgn0264495	1848	gpp "grappa" [Drosophila melan	0.716	0.103	0.550	1.5e-68
UNIPROTKB|F1NDF2	1211	F1NDF2 "Uncharacterized protei	0.682	0.151	0.614	3.8e-64
UNIPROTKB|E2R1J0	1248	DOT1L "Uncharacterized protein	0.694	0.149	0.614	1.5e-63
UNIPROTKB|E1BGK8	1714	LOC510442 "Uncharacterized pro	0.694	0.108	0.620	6.5e-63
UNIPROTKB|Q8TEK3	1739	DOT1L "Histone-lysine N-methyl	0.694	0.106	0.614	6.9e-63
ZFIN|ZDB-GENE-060503-341	1523	dot1l "DOT1-like, histone H3 m	0.694	0.122	0.593	4.8e-62
UNIPROTKB|C9JH95	208	DOT1L "Histone-lysine N-methyl	0.444	0.572	0.566	2e-33
UNIPROTKB|H7BZ90	1210	DOT1L "Histone-lysine N-methyl	0.276	0.061	0.662	9.4e-26
RGD|1306644	1562	Dot1l "DOT1-like, histone H3 m	0.264	0.045	0.676	5e-25
WB|WBGene00021474	946	Y39G10AR.18 [Caenorhabditis el	0.682	0.193	0.320	1.3e-20

FB|FBgn0264495 gpp "grappa" [Drosophila melanogaster (taxid:7227)]

 Score = 583 (210.3 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
 Identities = 109/198 (55%), Positives = 142/198 (71%)

Query:     6 LLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXXXXXX 65
             LLRHI+Q  YN +V +P+KLN Y+PFSP VYGETS++L+ +M+  +  + +D F      
Sbjct:   112 LLRHILQLVYNAAVLDPDKLNQYEPFSPEVYGETSYELVQQMLKHVTVSKEDTFIDLGSG 171

Query:    66 XXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLT 124
                           K C G+EKAD PA+YAE M  +F+++M W+GKR  E++L+KGDFL 
Sbjct:   172 VGQVVLQMAGSFPLKTCIGIEKADTPARYAERMDVIFRQYMGWFGKRFCEYKLIKGDFLV 231

Query:   125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLT 184
             +EHRE IT +++VFVNNFAFGPTVDH LKERF DL+DGAR+VSSKSFCPLNFRITDRNL+
Sbjct:   232 DEHRENITSSTLVFVNNFAFGPTVDHQLKERFADLRDGARVVSSKSFCPLNFRITDRNLS 291

Query:   185 DGG-----KKVPPGRGCV 197
             D G      ++PP +G V
Sbjct:   292 DIGTIMHVSEIPPLKGSV 309

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0031151 "histone methyltransferase activity (H3-K79 specific)" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IMP

UNIPROTKB|F1NDF2 F1NDF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 609 (219.4 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
 Identities = 113/184 (61%), Positives = 137/184 (74%)

Query:     2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct:    75 PSNGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTEDDLFVD 134

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                            T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct:   135 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 194

Query:   121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
             DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct:   195 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 254

Query:   181 RNLT 184
             RNL+
Sbjct:   255 RNLS 258

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:2000677 "regulation of transcription regulatory region DNA binding" evidence=IEA

UNIPROTKB|E2R1J0 DOT1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 617 (222.3 bits), Expect = 1.5e-63, Sum P(2) = 1.5e-63
 Identities = 115/187 (61%), Positives = 139/187 (74%)

Query:     2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct:   130 PSNGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTEDDLFVD 189

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                            T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct:   190 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 249

Query:   121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
             DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct:   250 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 309

Query:   181 RNLTDGG 187
             RNL+D G
Sbjct:   310 RNLSDIG 316

GO:2000677 "regulation of transcription regulatory region DNA binding" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BGK8 LOC510442 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 617 (222.3 bits), Expect = 6.5e-63, Sum P(2) = 6.5e-63
 Identities = 116/187 (62%), Positives = 139/187 (74%)

Query:     2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct:   102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTEDDLFVD 161

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                            T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct:   162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221

Query:   121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
             DFL+EE RE+I   S+VFVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct:   222 DFLSEEWRERIANTSVVFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281

Query:   181 RNLTDGG 187
             RNL+D G
Sbjct:   282 RNLSDIG 288

GO:2000677 "regulation of transcription regulatory region DNA binding" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q8TEK3 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" [Homo sapiens (taxid:9606)]

 Score = 616 (221.9 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 115/187 (61%), Positives = 139/187 (74%)

Query:     2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct:   102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                            T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct:   162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221

Query:   121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
             DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct:   222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281

Query:   181 RNLTDGG 187
             RNL+D G
Sbjct:   282 RNLSDIG 288

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0046425 "regulation of JAK-STAT cascade" evidence=IDA

GO:2000677 "regulation of transcription regulatory region DNA binding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034968 "histone lysine methylation" evidence=IDA

ZFIN|ZDB-GENE-060503-341 dot1l "DOT1-like, histone H3 methyltransferase (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 600 (216.3 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 111/187 (59%), Positives = 137/187 (73%)

Query:     2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL++++ID++    +D F  
Sbjct:   102 PSNGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQIIDEMEMMEEDTFVD 161

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                            T CK  +GVEKAD+PA YAE M   FKRWM+WYGK+HGE+ L +G
Sbjct:   162 LGSGVGQVVLQVAAATNCKHYYGVEKADIPATYAESMDKEFKRWMKWYGKKHGEYTLERG 221

Query:   121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
             DFL+EE +E+I   S++FVNNFAFGP VDH LKERF ++K+G +IVSSK F PLNFRI  
Sbjct:   222 DFLSEEWKERIASTSVIFVNNFAFGPEVDHQLKERFANMKEGGKIVSSKPFAPLNFRINS 281

Query:   181 RNLTDGG 187
             RNL+D G
Sbjct:   282 RNLSDIG 288

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|C9JH95 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79-specific" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 68/120 (56%), Positives = 85/120 (70%)

Query:    13 QTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXXXXXXXXXXXXX 72
             Q YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F             
Sbjct:    89 QVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQ 148

Query:    73 XXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131
                 T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +GDFL+EE RE+I
Sbjct:   149 VAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 208

GO:0005634 "nucleus" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

UNIPROTKB|H7BZ90 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79-specific" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query:   114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCP 173
             E+ L +GDFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F P
Sbjct:     2 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP 61

Query:   174 LNFRITDRNLTDGG 187
             LNFRI  RNL+D G
Sbjct:    62 LNFRINSRNLSDIG 75

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

RGD|1306644 Dot1l "DOT1-like, histone H3 methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 255 (94.8 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query:   117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNF 176
             L +GDFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNF
Sbjct:    52 LERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNF 111

Query:   177 RITDRNLTDGG 187
             RI  RNL+D G
Sbjct:   112 RINSRNLSDIG 122

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=ISO

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA;ISO

GO:0034968 "histone lysine methylation" evidence=ISO

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0046425 "regulation of JAK-STAT cascade" evidence=ISO

GO:2000677 "regulation of transcription regulatory region DNA binding" evidence=ISO

WB|WBGene00021474 Y39G10AR.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 255 (94.8 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/187 (32%), Positives = 98/187 (52%)

Query:     3 SRGLLRHIIQQTYNQSVTEPEKLNV-YQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
             S  + + I    Y  +V  P  LN  Y+ F+   YGET+ + +  +ID++N  P DVF  
Sbjct:   139 SAEVAKAITTYAYECAVPRPADLNQHYKSFTSETYGETNPEQLISIIDELNIGPQDVFVD 198

Query:    62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                              CK   G+E + +P+ +A+ +   FK++M  +GK HG+F  ++G
Sbjct:   199 LGSGIGQLVCLTAAYAKCKKSVGIELSQVPSNFAQDLAGYFKKFMSHFGKNHGKFEHIQG 258

Query:   121 DFLTEEHREKITQ-ASIVFVNNFAFGPTVDHALK-ERFQDLKDGARIVSSKSFCPLNFRI 178
             DFL  + ++ I + A+++F+NNFAF   +   +  E  QDLK G RIV++K        I
Sbjct:   259 DFLNPKFKQLICEEATVIFINNFAFDAALMLRINTELLQDLKHGTRIVTTKELGTNKKEI 318

Query:   179 TDRNLTD 185
             T R+ +D
Sbjct:   319 TFRSTSD 325

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8INR6	DOT1L_DROME	2, ., 1, ., 1, ., 4, 3	0.6019	0.7462	0.1082	yes	N/A
Q8TEK3	DOT1L_HUMAN	2, ., 1, ., 1, ., 4, 3	0.7058	0.6940	0.1069	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	268
pfam08123	205	pfam08123, DOT1, Histone methylation protein DOT1	8e-87
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-05

>gnl|CDD|149273 pfam08123, DOT1, Histone methylation protein DOT1

 Score =  256 bits (657), Expect = 8e-87
 Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 3/174 (1%)

Query: 15  YNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQV 73
           Y++SV  +  KLN Y+ FS  VYGE   + +S ++D+ N  P DVFVDLGSGVG  VLQ 
Sbjct: 1   YSRSVSPDANKLNHYKAFSNEVYGELLPEFLSDVLDKCNLGPQDVFVDLGSGVGNCVLQA 60

Query: 74  AAATGCKICWGVEKADLPAKYAEMHTV-FKRWMQWYGKRHGEFRLVKGDFLTEEHREKI- 131
           A   GCK+ +G E  D  +  AE+    FK+  + +GK+ G+   ++G FL  E  E+I 
Sbjct: 61  ALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERVEEII 120

Query: 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTD 185
            +A ++ VNNFAF P ++  LKE  QDLKDG +I+S KSF PLN+RI  RNL+D
Sbjct: 121 PEADVILVNNFAFDPELNLQLKEMLQDLKDGCKIISLKSFVPLNYRINFRNLSD 174

The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast. Length = 205

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 59  FVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118
            +DLG G G + L +A+  G ++  GV+ + +  + A                     ++
Sbjct: 2   VLDLGCGTGALALALASGPGARV-TGVDISPVALELAR--------KAAAALLADNVEVL 52

Query: 119 KGDFLTEEHREKITQASIVFVNN--FAFGPTVDHALKERFQDLKDGARIV 166
           KGD       E      ++  +         +   L+E  + LK G  +V
Sbjct: 53  KGDAEELPP-EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	99.95
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.93
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.88
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.85
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.84
KOG1540|consensus	296		99.84
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.84
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.82
PLN02244	340	tocopherol O-methyltransferase	99.8
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.8
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.74
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.74
PRK05785	226	hypothetical protein; Provisional	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.72
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.69
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.69
PLN02336	475	phosphoethanolamine N-methyltransferase	99.68
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.68
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.67
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.67
PLN02490	340	MPBQ/MSBQ methyltransferase	99.66
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.65
KOG3924|consensus	419		99.65
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.65
PRK11207	197	tellurite resistance protein TehB; Provisional	99.64
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.63
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.63
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.62
PRK08317	241	hypothetical protein; Provisional	99.61
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.61
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.6
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.59
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.59
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.57
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.57
PRK06922	677	hypothetical protein; Provisional	99.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.55
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.54
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.54
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.53
PRK04266	226	fibrillarin; Provisional	99.53
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.52
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.52
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.52
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.51
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.51
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.51
KOG1270|consensus	282		99.5
TIGR03438	301	probable methyltransferase. This model represents	99.5
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.5
PRK07402	196	precorrin-6B methylase; Provisional	99.49
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.49
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.48
PRK12335	287	tellurite resistance protein TehB; Provisional	99.48
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.48
PLN03075	296	nicotianamine synthase; Provisional	99.47
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.47
PTZ00146	293	fibrillarin; Provisional	99.46
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.45
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.45
PLN02336	475	phosphoethanolamine N-methyltransferase	99.45
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.43
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.42
PRK14967	223	putative methyltransferase; Provisional	99.42
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.41
KOG4300|consensus	252		99.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.4
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.4
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
KOG1271|consensus	227		99.39
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.37
COG4123	248	Predicted O-methyltransferase [General function pr	99.37
PRK14968	188	putative methyltransferase; Provisional	99.36
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.36
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.36
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.35
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.34
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.34
TIGR00438	188	rrmJ cell division protein FtsJ.	99.34
PRK06202	232	hypothetical protein; Provisional	99.34
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.34
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.33
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.33
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.32
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.32
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.31
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.3
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.3
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.3
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.29
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.29
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.29
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.28
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.28
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.28
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.27
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.26
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.25
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.25
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.24
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.23
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.23
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.22
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.21
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.21
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.19
KOG1269|consensus	364		99.17
PRK04457	262	spermidine synthase; Provisional	99.16
KOG1541|consensus	270		99.16
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.15
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.14
PHA03411	279	putative methyltransferase; Provisional	99.14
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.14
PRK00811	283	spermidine synthase; Provisional	99.13
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.12
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.12
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.12
KOG2899|consensus	288		99.11
KOG3010|consensus	261		99.11
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.1
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.1
COG2890	280	HemK Methylase of polypeptide chain release factor	99.09
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.08
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.08
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.08
PLN02366	308	spermidine synthase	99.07
KOG1975|consensus	389		99.07
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.06
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.05
KOG1499|consensus	346		99.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.03
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.03
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.01
PHA03412	241	putative methyltransferase; Provisional	99.0
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.98
PRK01581	374	speE spermidine synthase; Validated	98.97
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.96
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.95
KOG2361|consensus	264		98.94
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.93
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.92
KOG1500|consensus	517		98.91
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.91
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
PRK03612	521	spermidine synthase; Provisional	98.9
PLN02672	1082	methionine S-methyltransferase	98.9
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.89
KOG1661|consensus	237		98.89
KOG3045|consensus	325		98.88
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.87
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.87
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.86
PLN02476	278	O-methyltransferase	98.86
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.84
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.84
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.84
COG4122	219	Predicted O-methyltransferase [General function pr	98.83
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.8
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.8
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.75
KOG1331|consensus	293		98.74
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.72
PRK04148	134	hypothetical protein; Provisional	98.71
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.71
KOG2904|consensus	328		98.67
COG2521	287	Predicted archaeal methyltransferase [General func	98.64
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.62
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.61
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.61
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.59
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.57
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.57
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.57
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.56
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.54
KOG3420|consensus	185		98.54
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.51
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.49
KOG2940|consensus	325		98.48
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.47
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.46
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.45
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.43
PLN02823	336	spermine synthase	98.43
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.41
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.4
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.37
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.36
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.34
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.32
KOG2915|consensus	314		98.31
KOG0820|consensus	315		98.31
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.31
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.3
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.28
KOG3178|consensus	342		98.28
COG4076	252	Predicted RNA methylase [General function predicti	98.27
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.25
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.21
COG2520	341	Predicted methyltransferase [General function pred	98.21
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.21
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.17
KOG4058|consensus	199		98.16
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.11
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.09
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.08
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.07
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.06
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.05
KOG1663|consensus	237		98.03
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.03
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.03
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.01
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.0
PRK00536	262	speE spermidine synthase; Provisional	97.95
PF13679	141	Methyltransf_32: Methyltransferase domain	97.95
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.93
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.91
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.84
KOG2187|consensus	534		97.78
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.77
KOG3115|consensus	249		97.77
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.76
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.75
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.73
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.71
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.66
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.66
KOG3987|consensus	288		97.62
KOG2730|consensus	263		97.62
COG4798	238	Predicted methyltransferase [General function pred	97.62
KOG3191|consensus	209		97.61
COG0286	489	HsdM Type I restriction-modification system methyl	97.6
KOG4589|consensus	232		97.56
COG3897	218	Predicted methyltransferase [General function pred	97.56
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.49
PRK10742	250	putative methyltransferase; Provisional	97.46
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.43
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.34
KOG2352|consensus	482		97.28
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.21
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.18
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.09
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.07
KOG1709|consensus	271		97.05
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.85
KOG1596|consensus	317		96.57
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.56
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.33
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.3
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.24
KOG1501|consensus	636		96.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.97
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.92
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.74
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.72
KOG2798|consensus	369		95.7
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.59
KOG2198|consensus	375		95.48
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	95.44
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.35
KOG1122|consensus	460		95.3
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.25
KOG0822|consensus	649		95.2
KOG2793|consensus	248		95.14
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.13
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.11
PHA01634	156	hypothetical protein	95.1
PRK11524	284	putative methyltransferase; Provisional	94.92
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.92
PRK13699	227	putative methylase; Provisional	94.84
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.81
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.79
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.76
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.61
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.48
KOG2671|consensus	421		94.44
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.38
KOG2651|consensus	476		94.36
KOG3201|consensus	201		93.82
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	93.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.76
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.73
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	93.6
KOG1562|consensus	337		93.59
COG4301	321	Uncharacterized conserved protein [Function unknow	93.36
PTZ00357	1072	methyltransferase; Provisional	93.34
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.23
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.12
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.97
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.79
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.79
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.76
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.7
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	92.65
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.63
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	92.59
KOG0024|consensus	354		92.39
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	92.29
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.03
KOG1099|consensus	294		91.84
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.5
KOG0022|consensus	375		91.44
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.26
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.1
COG1565	370	Uncharacterized conserved protein [Function unknow	91.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.94
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	90.93
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.69
KOG2920|consensus	282		90.68
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.66
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.66
PLN02740	381	Alcohol dehydrogenase-like	90.47
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	90.23
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	90.1
KOG0023|consensus	360		89.96
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	89.89
COG1255	129	Uncharacterized protein conserved in archaea [Func	89.86
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.51
PLN02494	477	adenosylhomocysteinase	89.44
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	89.41
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.25
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	89.09
PRK13699	227	putative methylase; Provisional	88.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.95
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	88.91
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.83
PLN02827	378	Alcohol dehydrogenase-like	88.51
PRK11524	284	putative methyltransferase; Provisional	88.49
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	88.47
PF03269	177	DUF268: Caenorhabditis protein of unknown function	88.46
KOG2360|consensus	413		88.22
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.09
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.84
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.62
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	87.52
KOG0821|consensus	326		87.36
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	86.97
PRK10458	467	DNA cytosine methylase; Provisional	86.89
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	86.79
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.75
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	86.44
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.39
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.07
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.73
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	85.68
PLN02586	360	probable cinnamyl alcohol dehydrogenase	85.63
KOG1098|consensus	780		85.26
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	85.11
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	85.1
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	85.06
PTZ00075	476	Adenosylhomocysteinase; Provisional	84.06
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	83.72
PRK10669	558	putative cation:proton antiport protein; Provision	82.44
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	82.14
COG1568	354	Predicted methyltransferases [General function pre	81.89
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	81.88
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	81.65
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	81.63
KOG2078|consensus	495		81.55
KOG1227|consensus	351		81.5
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	81.41
PRK10083	339	putative oxidoreductase; Provisional	81.02
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	80.63
PRK03562	621	glutathione-regulated potassium-efflux system prot	80.49
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	80.21
PRK13243	333	glyoxylate reductase; Reviewed	80.11

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=99.95  E-value=4.5e-27  Score=197.47  Aligned_cols=172  Identities=47%  Similarity=0.770  Sum_probs=130.8

Q ss_pred             HHhhc-CCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhH
Q psy17227         15 YNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAK   93 (268)
Q Consensus        15 y~~~~-~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~   93 (268)
                      |++++ |++..|++|..|++..|||+.+..+..+++.++++++++++|||||.|.+...+|..+++.+++|||+.+....
T Consensus         1 y~~~v~~~~~~l~~y~~~s~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~   80 (205)
T PF08123_consen    1 YNRSVSPNPKVLNKYKSFSSETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHD   80 (205)
T ss_dssp             HHHHTGCGGGGGGCSTTTCCCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHH
T ss_pred             CCccccCCHHHHhccccCCCcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHH
Confidence            88999 89999999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             HHH-HHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227         94 YAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus        94 ~a~-~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +|+ +.+.++++++..|....++++.+||+.+.++... ..++|+|++|+++|.+++...+.+++..||||.+||++.++
T Consensus        81 ~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen   81 LAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             HHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             HHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            776 5566667777777766789999999998764332 35789999999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCC
Q psy17227        172 CPLNFRITDRNLTDG  186 (268)
Q Consensus       172 ~~~~~~~~~~~~~~i  186 (268)
                      +|..+.+...+.+++
T Consensus       161 ~~~~~~~~~~~~~~~  175 (205)
T PF08123_consen  161 CPRRRSINSRNLDDI  175 (205)
T ss_dssp             S-TT----TTSTTSG
T ss_pred             CCCCcccchhhccCh
Confidence            988766555454443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.93  E-value=9.4e-25  Score=186.39  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK   87 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~   87 (268)
                      +..+.++|+.+.+.+|.+|....+.-      ...--+.+++.++..+|.+|||||||||.+++.+++..|..+|+|+|+
T Consensus        10 ~~~v~~vF~~ia~~YD~~n~~~S~g~------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~   83 (238)
T COG2226          10 QEKVQKVFDKVAKKYDLMNDLMSFGL------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDI   83 (238)
T ss_pred             HHHHHHHHHhhHHHHHhhcccccCcc------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEEC
Confidence            46789999999999999996665553      111123577788888999999999999999999999988778999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227         88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus        88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      |+.|...++  ++    +...+.  .+++|++||+++|||+|++||+ +.++..+.+.++..++|+|++|||||||++++
T Consensus        84 s~~ML~~a~--~k----~~~~~~--~~i~fv~~dAe~LPf~D~sFD~-vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226          84 SESMLEVAR--EK----LKKKGV--QNVEFVVGDAENLPFPDNSFDA-VTISFGLRNVTDIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             CHHHHHHHH--HH----hhccCc--cceEEEEechhhCCCCCCccCE-EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence            998555544  32    223333  2499999999999999998876 55556666779999999999999999999998


Q ss_pred             eCCCCC
Q psy17227        168 SKSFCP  173 (268)
Q Consensus       168 ~~~~~~  173 (268)
                      .+...|
T Consensus       155 le~~~p  160 (238)
T COG2226         155 LEFSKP  160 (238)
T ss_pred             EEcCCC
Confidence            744443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.88  E-value=5.1e-23  Score=176.75  Aligned_cols=151  Identities=20%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeC
Q psy17227          9 HIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEK   87 (268)
Q Consensus         9 ~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~   87 (268)
                      +-+.++|+++.+.+|.+|....+...   ..+.   +.+++.++..+|.+|||||||||.+++.+++..+. .+|+|+|+
T Consensus         7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~---~~wr---~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~   80 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRMNDLLSFGQD---RRWR---RKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI   80 (233)
T ss_dssp             ------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES
T ss_pred             HHHHHHHHHHHHHhCCCccccCCcHH---HHHH---HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC
Confidence            45889999999999999876554321   1111   24666678899999999999999999999887653 46999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227         88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus        88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      |+.|...++  +++.    ..+  ..+|+++++|++++|+++++||+ ++++..+...++....++|++|+|||||++++
T Consensus        81 s~~ML~~a~--~k~~----~~~--~~~i~~v~~da~~lp~~d~sfD~-v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen   81 SPGMLEVAR--KKLK----REG--LQNIEFVQGDAEDLPFPDNSFDA-VTCSFGLRNFPDRERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             -HHHHHHHH--HHHH----HTT----SEEEEE-BTTB--S-TT-EEE-EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHH--HHHH----hhC--CCCeeEEEcCHHHhcCCCCceeE-EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence            998665554  3222    222  24899999999999998876654 33344455668999999999999999999998


Q ss_pred             eCCCCCC
Q psy17227        168 SKSFCPL  174 (268)
Q Consensus       168 ~~~~~~~  174 (268)
                      .+...|.
T Consensus       152 le~~~p~  158 (233)
T PF01209_consen  152 LEFSKPR  158 (233)
T ss_dssp             EEEEB-S
T ss_pred             eeccCCC
Confidence            8555554

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.85  E-value=2.7e-20  Score=162.88  Aligned_cols=150  Identities=14%  Similarity=0.112  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEE
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGV   85 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~Gi   85 (268)
                      ...+.++|+++.+.+|.++.+..+..       ....+ .+++.+++.++.+|||||||+|.++..+++..+. .+|+|+
T Consensus        32 ~~~v~~~f~~~A~~YD~~~~~~s~g~-------~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gv  104 (261)
T PLN02233         32 ANERQALFNRIAPVYDNLNDLLSLGQ-------HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL  104 (261)
T ss_pred             HHHHHHHHHHhhhHHHHhhhhhcCCh-------hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEE
Confidence            45688999999988887765533321       12222 2455678889999999999999999988887653 369999


Q ss_pred             eCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcE
Q psy17227         86 EKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGAR  164 (268)
Q Consensus        86 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~  164 (268)
                      |+|+.|+..|+  ++....  .. ....+++++++|+.++|++++++|  +|+++ .++|.+++...++|++|+|||||+
T Consensus       105 D~S~~ml~~A~--~r~~~~--~~-~~~~~i~~~~~d~~~lp~~~~sfD--~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~  177 (261)
T PLN02233        105 DFSSEQLAVAA--SRQELK--AK-SCYKNIEWIEGDATDLPFDDCYFD--AITMGYGLRNVVDRLKAMQEMYRVLKPGSR  177 (261)
T ss_pred             ECCHHHHHHHH--HHhhhh--hh-ccCCCeEEEEcccccCCCCCCCEe--EEEEecccccCCCHHHHHHHHHHHcCcCcE
Confidence            99998666654  221100  00 113489999999999999876654  55554 456778999999999999999999


Q ss_pred             EEEeCCC
Q psy17227        165 IVSSKSF  171 (268)
Q Consensus       165 ~i~~~~~  171 (268)
                      +++.+..
T Consensus       178 l~i~d~~  184 (261)
T PLN02233        178 VSILDFN  184 (261)
T ss_pred             EEEEECC
Confidence            9987443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=2.9e-20  Score=161.67  Aligned_cols=188  Identities=18%  Similarity=0.224  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..++++++++||++|||||||+|.+++++|++++.. |+|+++|+++...+      +++.+..|.. .+++++..
T Consensus        58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~-V~GvTlS~~Q~~~~------~~r~~~~gl~-~~v~v~l~  129 (283)
T COG2230          58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVT-VVGVTLSEEQLAYA------EKRIAARGLE-DNVEVRLQ  129 (283)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCE-EEEeeCCHHHHHHH------HHHHHHcCCC-cccEEEec
Confidence            3455679999999999999999999999999999999887 99999999744433      3334456653 58999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC-CcccccccccCCCCCCCCCCccc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPT--VDHALKERFQDLKDGARIVSSKSFCPL-NFRITDRNLTDGGKKVPPGRGCV  197 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~-~~~~~~~~~~~i~~~l~~~~g~~  197 (268)
                      |..+++-  . ||. +|++.++-|...  ....|+.+++.|+|||+++...-..+. .+.   .....+.+.+.  ||+.
T Consensus       130 d~rd~~e--~-fDr-IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiF--PgG~  200 (283)
T COG2230         130 DYRDFEE--P-FDR-IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIF--PGGE  200 (283)
T ss_pred             ccccccc--c-cce-eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCC--CCCc
Confidence            9998762  2 676 888888855433  778899999999999999865222222 110   22333334443  4444


Q ss_pred             ccccccccccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy17227        198 DQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKS  252 (268)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (268)
                      .++...+....      ....+.+.......+++..+ +..|+.+|.+.++.+..
T Consensus       201 lPs~~~i~~~~------~~~~~~v~~~~~~~~hYa~T-l~~W~~~f~~~~~~a~~  248 (283)
T COG2230         201 LPSISEILELA------SEAGFVVLDVESLRPHYART-LRLWRERFEANRDEAIA  248 (283)
T ss_pred             CCCHHHHHHHH------HhcCcEEehHhhhcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            34332222110      01112222222346777777 46699999988888633

>KOG1540|consensus

Probab=99.84  E-value=3.2e-20  Score=156.71  Aligned_cols=150  Identities=12%  Similarity=0.135  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC----
Q psy17227          5 GLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC----   79 (268)
Q Consensus         5 ~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~----   79 (268)
                      +-=++.|+.+|..+.+.+|.||.  +++-.    .+ +..+ ..+.+++..++++|||++||||.+++.+.+..+.    
T Consensus        56 ~eke~~V~~vF~~vA~~YD~mND--~mSlG----iH-RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~  128 (296)
T KOG1540|consen   56 SEKERLVHHVFESVAKKYDIMND--AMSLG----IH-RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD  128 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHH--Hhhcc----hh-HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCC
Confidence            34478899999999988888853  33321    11 1222 3667888899999999999999999999988776    


Q ss_pred             --cEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc-ccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHH
Q psy17227         80 --KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH-GEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERF  156 (268)
Q Consensus        80 --~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~  156 (268)
                        .+|+++|+||+|...++  +++.    ..+.+. ..+.|+++|+++|||+++++|. ..+...+-.++++.++++|+|
T Consensus       129 ~~~~V~v~Dinp~mL~vgk--qRa~----~~~l~~~~~~~w~~~dAE~LpFdd~s~D~-yTiafGIRN~th~~k~l~EAY  201 (296)
T KOG1540|consen  129 RESKVTVLDINPHMLAVGK--QRAK----KRPLKASSRVEWVEGDAEDLPFDDDSFDA-YTIAFGIRNVTHIQKALREAY  201 (296)
T ss_pred             CCceEEEEeCCHHHHHHHH--HHHh----hcCCCcCCceEEEeCCcccCCCCCCccee-EEEecceecCCCHHHHHHHHH
Confidence              67999999998655554  2222    234432 2499999999999999987765 445555667899999999999


Q ss_pred             hcCCCCcEEEEe
Q psy17227        157 QDLKDGARIVSS  168 (268)
Q Consensus       157 r~LkpGG~~i~~  168 (268)
                      |||||||+|.+.
T Consensus       202 RVLKpGGrf~cL  213 (296)
T KOG1540|consen  202 RVLKPGGRFSCL  213 (296)
T ss_pred             HhcCCCcEEEEE
Confidence            999999999986

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.84  E-value=3.4e-21  Score=169.02  Aligned_cols=191  Identities=17%  Similarity=0.190  Sum_probs=114.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++++++++||++|||||||+|++++.+|+++|+. |+||++|+.+...      +++++++.|+. .++++.++|+
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~-v~gitlS~~Q~~~------a~~~~~~~gl~-~~v~v~~~D~  121 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCH-VTGITLSEEQAEY------ARERIREAGLE-DRVEVRLQDY  121 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--E-EEEEES-HHHHHH------HHHHHHCSTSS-STEEEEES-G
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcE-EEEEECCHHHHHH------HHHHHHhcCCC-CceEEEEeec
Confidence            34568999999999999999999999999999999987 9999999873333      33344455653 5899999999


Q ss_pred             CCCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccc-cc-cccCCCCCCCCCCcccc
Q psy17227        123 LTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLNFRIT-DR-NLTDGGKKVPPGRGCVD  198 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~-~~-~~~~i~~~l~~~~g~~~  198 (268)
                      .+++.   .||. ||++.++.|.  .+....++++.+.|||||++++.....+...... .. ....+.+.+.  ||+..
T Consensus       122 ~~~~~---~fD~-IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg~l  195 (273)
T PF02353_consen  122 RDLPG---KFDR-IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGGYL  195 (273)
T ss_dssp             GG------S-SE-EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS--
T ss_pred             cccCC---CCCE-EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCCCC
Confidence            88764   4777 8888888776  4578889999999999999986522222211111 00 1122333343  44444


Q ss_pred             ccccccc---ccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q psy17227        199 QTLTSLS---TATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKE  258 (268)
Q Consensus       199 ~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (268)
                      +....+.   ...++.+..         ....++++.++ +..|+.+|.+.++.+.+. |.++
T Consensus       196 ps~~~~~~~~~~~~l~v~~---------~~~~~~hY~~T-l~~W~~~f~~~~~~i~~~-~~~~  247 (273)
T PF02353_consen  196 PSLSEILRAAEDAGLEVED---------VENLGRHYART-LRAWRENFDANREEIIAL-FDEE  247 (273)
T ss_dssp             -BHHHHHHHHHHTT-EEEE---------EEE-HHHHHHH-HHHHHHHHHHTHHHHHHH-SHHH
T ss_pred             CCHHHHHHHHhcCCEEEEE---------EEEcCcCHHHH-HHHHHHHHHHHHHHHHHh-cCHH
Confidence            4443332   222222211         11225555566 566999999999887655 5554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.82  E-value=3.5e-19  Score=156.00  Aligned_cols=199  Identities=14%  Similarity=0.134  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      .+....++..+++.++.+|||||||+|..+..++..+++. |+|+|+|+.++..++  +++.        ...+++|+++
T Consensus        38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~-v~giD~s~~~~~~a~--~~~~--------~~~~i~~~~~  106 (263)
T PTZ00098         38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAH-VHGVDICEKMVNIAK--LRNS--------DKNKIEFEAN  106 (263)
T ss_pred             hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCE-EEEEECCHHHHHHHH--HHcC--------cCCceEEEEC
Confidence            3557789999999999999999999999999998877665 999999997555443  2211        1347999999


Q ss_pred             CCCCCcccccccceEEEEEe-ccccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccccccccCCCCCCCCCCccc
Q psy17227        121 DFLTEEHREKITQASIVFVN-NFAFGP--TVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCV  197 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~-~~~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~  197 (268)
                      |+.+.|+++..  +|+|++. .++|.+  +....+++++++|||||+|++++................+.....  ....
T Consensus       107 D~~~~~~~~~~--FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~  182 (263)
T PTZ00098        107 DILKKDFPENT--FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY--TLIP  182 (263)
T ss_pred             CcccCCCCCCC--eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC--CCCC
Confidence            99998887654  5667764 456664  788899999999999999999855332210000000000000000  0011


Q ss_pred             ccccccccccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q psy17227        198 DQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVED  261 (268)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (268)
                      ...+..++.+.++......   ++..  . ....+...++.+..+..+..+.. +.+|.+.|..
T Consensus       183 ~~~~~~~l~~aGF~~v~~~---d~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (263)
T PTZ00098        183 IQEYGDLIKSCNFQNVVAK---DISD--Y-WLELLQVELKKLEEKKEEFLKLY-SEKEYNSLKD  239 (263)
T ss_pred             HHHHHHHHHHCCCCeeeEE---eCcH--H-HHHHHHHHHHHHHHhHHHHHHhc-CHHHHHHHHH
Confidence            1233444455555443332   1111  1 12234455677777777777775 7777777765

>PLN02244 tocopherol O-methyltransferase

Probab=99.80  E-value=6.9e-19  Score=159.48  Aligned_cols=157  Identities=17%  Similarity=0.183  Sum_probs=108.9

Q ss_pred             CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCccc---------CcHHHHHHHHHHcCC-----CCCCEEEEEcCCCC
Q psy17227          2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGE---------TSFDLISRMIDQINA-----TPDDVFVDLGSGVG   67 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~---------~~~~~~~~ll~~l~~-----~~~~~vLDiGCG~G   67 (268)
                      +|..-++.-+..-|+....-.+.+. -.++....|..         .....+..+++.+++     .++.+|||||||+|
T Consensus        52 ~~~~~~~~~i~~~Yd~~~~~~e~~~-g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G  130 (340)
T PLN02244         52 AATADLKEGIAEFYDESSGVWEDVW-GEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG  130 (340)
T ss_pred             cchhhHHHHHHHHHccchHHHHHHh-CCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence            3455567777777876433222221 01222112211         112345567788877     78899999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE-eccccCc
Q psy17227         68 QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV-NNFAFGP  146 (268)
Q Consensus        68 ~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~-~~~~~~~  146 (268)
                      .++..+++.+++. |+|||+|+.++..++  ++++    ..+. ..+++|+++|+.++|++++.||  +|++ ....|.+
T Consensus       131 ~~~~~La~~~g~~-v~gvD~s~~~i~~a~--~~~~----~~g~-~~~v~~~~~D~~~~~~~~~~FD--~V~s~~~~~h~~  200 (340)
T PLN02244        131 GSSRYLARKYGAN-VKGITLSPVQAARAN--ALAA----AQGL-SDKVSFQVADALNQPFEDGQFD--LVWSMESGEHMP  200 (340)
T ss_pred             HHHHHHHHhcCCE-EEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEEcCcccCCCCCCCcc--EEEECCchhccC
Confidence            9999999887766 999999997544433  3332    2333 2479999999999998776655  4554 5567889


Q ss_pred             CHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        147 TVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       147 ~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +....+++++|+|||||+|++.+
T Consensus       201 d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        201 DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999999999999999999864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.80  E-value=2.3e-18  Score=147.69  Aligned_cols=147  Identities=14%  Similarity=0.196  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEe
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVE   86 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD   86 (268)
                      +..+.+.|+++.+.+|.++.+..+..      .......++..++++++.+|||+|||+|..+..++...+ ...|+|+|
T Consensus         4 ~~~~~~~f~~~a~~yd~~~~~~~~~~------~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD   77 (231)
T TIGR02752         4 EERVHKVFEKIYKKYDRMNSVISFQR------HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLD   77 (231)
T ss_pred             HHHHHHHHHHhhhHHhHHHHHhcCCc------hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEE
Confidence            56788999999988888876544432      122235677888999999999999999999999988764 33699999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEE
Q psy17227         87 KADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARI  165 (268)
Q Consensus        87 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~  165 (268)
                      +|+.++..++  +++.    ..+  ..+++++++|+.+++++++.+  |+|+++.. .+.++....+++++++|||||++
T Consensus        78 ~s~~~~~~a~--~~~~----~~~--~~~v~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l  147 (231)
T TIGR02752        78 FSENMLSVGR--QKVK----DAG--LHNVELVHGNAMELPFDDNSF--DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV  147 (231)
T ss_pred             CCHHHHHHHH--HHHH----hcC--CCceEEEEechhcCCCCCCCc--cEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence            9997555443  3332    122  348999999999988766544  55655444 56688999999999999999999


Q ss_pred             EEeCC
Q psy17227        166 VSSKS  170 (268)
Q Consensus       166 i~~~~  170 (268)
                      ++.+.
T Consensus       148 ~~~~~  152 (231)
T TIGR02752       148 VCLET  152 (231)
T ss_pred             EEEEC
Confidence            97643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.74  E-value=5.9e-18  Score=124.09  Aligned_cols=94  Identities=22%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             EEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE
Q psy17227         60 VDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV  139 (268)
Q Consensus        60 LDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~  139 (268)
                      ||||||+|..+..+++. +...++|+|+|+.++..++  +..         ...++.++++|+.++|++++++  |+|++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~--~~~---------~~~~~~~~~~d~~~l~~~~~sf--D~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQAR--KRL---------KNEGVSFRQGDAEDLPFPDNSF--DVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHH--HHT---------TTSTEEEEESBTTSSSS-TT-E--EEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH--hcc---------cccCchheeehHHhCccccccc--ccccc
Confidence            89999999999999887 5556999999987433332  211         1346779999999999988765  55665


Q ss_pred             ecc-ccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        140 NNF-AFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       140 ~~~-~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      ... .|.++....++++.|+|||||++++
T Consensus        67 ~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   67 NSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            544 5678899999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.74  E-value=1.2e-17  Score=145.57  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.++..++.+|||||||+|.+++.++...+..+|+|+|+|+.|+..++      +         .+++++++|+
T Consensus        17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~------~---------~~~~~~~~d~   81 (255)
T PRK14103         17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR------E---------RGVDARTGDV   81 (255)
T ss_pred             HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH------h---------cCCcEEEcCh
Confidence            356788899989999999999999999999988765556999999997554442      1         2688999999


Q ss_pred             CCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++ +++  .+|+|+++.. +|.+++...+++++++|||||++++.
T Consensus        82 ~~~~-~~~--~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         82 RDWK-PKP--DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhCC-CCC--CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            8875 233  4567777665 56688999999999999999999986

>PRK05785 hypothetical protein; Provisional

Probab=99.73  E-value=1.5e-17  Score=142.46  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK   87 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~   87 (268)
                      ...+.++|+++.+.+|.++....+...   ..+...+.+.+... ..++.+|||||||||.++..+++..+. +|+|+|+
T Consensus         8 ~~~v~~~f~~iA~~YD~~n~~~s~g~~---~~wr~~~~~~l~~~-~~~~~~VLDlGcGtG~~~~~l~~~~~~-~v~gvD~   82 (226)
T PRK05785          8 WEELQEAYNKIPKAYDRANRFISFNQD---VRWRAELVKTILKY-CGRPKKVLDVAAGKGELSYHFKKVFKY-YVVALDY   82 (226)
T ss_pred             HHHHHHHHHhhhHHHHHhhhhccCCCc---HHHHHHHHHHHHHh-cCCCCeEEEEcCCCCHHHHHHHHhcCC-EEEEECC
Confidence            456789999999989998876554321   11222222222221 234779999999999999999887644 4999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCc
Q psy17227         88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGA  163 (268)
Q Consensus        88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG  163 (268)
                      |+.|+..++      +          +..++++|++++|+++++|  |+|++.. +.|.+++...++|++|+|||..
T Consensus        83 S~~Ml~~a~------~----------~~~~~~~d~~~lp~~d~sf--D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         83 AENMLKMNL------V----------ADDKVVGSFEALPFRDKSF--DVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CHHHHHHHH------h----------ccceEEechhhCCCCCCCE--EEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence            998655543      1          1246899999999988765  5566554 4567899999999999999943

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.72  E-value=4.8e-17  Score=123.60  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-CCCcccccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-LTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~~l~~~~~~~d  133 (268)
                      |+.+|||||||+|.+++.+++..+..+|+|||+|+.++..++  +++.    ..+. ..+++++++|+ ...+..   ..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~i~~~~~d~~~~~~~~---~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIAR--ERAA----EEGL-SDRITFVQGDAEFDPDFL---EP   70 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHH--HHHH----HTTT-TTTEEEEESCCHGGTTTS---SC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEECccccCcccC---CC
Confidence            678999999999999999999666666999999998655554  3332    1222 36999999999 333322   24


Q ss_pred             eEEEEEec-ccc-C---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNN-FAF-G---PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~-~~~-~---~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++.. ..+ .   ++....++++.+.|+|||++++.
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            78888876 221 2   45677899999999999999985

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.71  E-value=3.9e-17  Score=141.94  Aligned_cols=133  Identities=12%  Similarity=0.158  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK   87 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~   87 (268)
                      ++.+.+.|+++...++.      +.     .........+++.++..++.+|||+|||+|.++..++.. +.. ++|+|+
T Consensus         6 k~~i~~~F~~aa~~Y~~------~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~~~D~   72 (251)
T PRK10258          6 KQAIAAAFGRAAAHYEQ------HA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQ-VTALDL   72 (251)
T ss_pred             HHHHHHHHHHHHHhHhH------HH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCe-EEEEEC
Confidence            45677788887644332      11     133445567888887777889999999999999888763 554 999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227         88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus        88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      |+.|+..++  ++           .....++++|+.++|++++.  +|+|+++.. +|.+++...+.+++++|||||.++
T Consensus        73 s~~~l~~a~--~~-----------~~~~~~~~~d~~~~~~~~~~--fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~  137 (251)
T PRK10258         73 SPPMLAQAR--QK-----------DAADHYLAGDIESLPLATAT--FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA  137 (251)
T ss_pred             CHHHHHHHH--hh-----------CCCCCEEEcCcccCcCCCCc--EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence            997544433  11           12457899999999886654  567777665 456789999999999999999999


Q ss_pred             Ee
Q psy17227        167 SS  168 (268)
Q Consensus       167 ~~  168 (268)
                      ++
T Consensus       138 ~~  139 (251)
T PRK10258        138 FT  139 (251)
T ss_pred             EE
Confidence            86

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.69  E-value=1.8e-16  Score=127.52  Aligned_cols=104  Identities=23%  Similarity=0.350  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK  130 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~  130 (268)
                      +++.+|||+|||+|.++..++.. .+..+++|+|+|+.++..++  +.++    ..+  ..+++|+++|+.+++  ++  
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~--~~~~----~~~--~~ni~~~~~d~~~l~~~~~--   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK--KRAK----ELG--LDNIEFIQGDIEDLPQELE--   71 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH--HHHH----HTT--STTEEEEESBTTCGCGCSS--
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh--cccc----ccc--ccccceEEeehhccccccC--
Confidence            46789999999999999999954 44556999999998555544  3333    233  348999999999977  33  


Q ss_pred             ccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ..+|+|+++.+ ++..++...++++.+.|||||.+++.
T Consensus        72 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~  109 (152)
T PF13847_consen   72 -EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIIS  109 (152)
T ss_dssp             -TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence             36788888766 46677889999999999999999986

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=1.4e-16  Score=138.89  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ....++..+++.++.+|||||||+|.++..+++..+..+|+|+|+|+.|+..++      +       ...+++|+.+|+
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~------~-------~~~~~~~~~~d~   85 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR------S-------RLPDCQFVEADI   85 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH------H-------hCCCCeEEECch
Confidence            456788888889999999999999999999998876666999999997554443      1       124789999999


Q ss_pred             CCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++. ++  .+|+|+++.. .|.++....+++++++|||||.+++.
T Consensus        86 ~~~~~-~~--~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         86 ASWQP-PQ--ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             hccCC-CC--CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            87653 23  4567777665 46678899999999999999999985

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.68  E-value=3.9e-16  Score=147.61  Aligned_cols=116  Identities=14%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ....+++.+.+.++.+|||||||+|.+++.++...++. |+|+|+|+.++..|+  +++.      +. ..+++|+++|+
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvDiS~~~l~~A~--~~~~------~~-~~~v~~~~~d~  323 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVH-VVGIDLSVNMISFAL--ERAI------GR-KCSVEFEVADC  323 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCE-EEEEECCHHHHHHHH--HHhh------cC-CCceEEEEcCc
Confidence            45678888888899999999999999999999877775 999999997555543  2221      22 24799999999


Q ss_pred             CCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        123 LTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      .+++++++.  +|+|++. .++|.+++...+++++|+|||||++++++.
T Consensus       324 ~~~~~~~~~--fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        324 TKKTYPDNS--FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             ccCCCCCCC--EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            998876654  5566664 557889999999999999999999998744

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.68  E-value=6.3e-16  Score=142.03  Aligned_cols=185  Identities=13%  Similarity=0.042  Sum_probs=112.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++++++++++++|||||||+|.++..+++..++. |+|+|+|+.+...++  ++++      +   .++++..+|+
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~-V~giDlS~~~l~~A~--~~~~------~---l~v~~~~~D~  222 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVS-VVGVTISAEQQKLAQ--ERCA------G---LPVEIRLQDY  222 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCE-EEEEeCCHHHHHHHH--HHhc------c---CeEEEEECch
Confidence            34557888999999999999999999999999877775 999999998555443  2221      1   2588999998


Q ss_pred             CCCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccccccccCCCCCCCCCCcccccc
Q psy17227        123 LTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQT  200 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~~  200 (268)
                      .+++   +.+|. |+++..+.|.  .+....++++.++|||||++++.....+...   ......+.+.+.  |+...+.
T Consensus       223 ~~l~---~~fD~-Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~---~~~~~~i~~yif--p~g~lps  293 (383)
T PRK11705        223 RDLN---GQFDR-IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD---TNVDPWINKYIF--PNGCLPS  293 (383)
T ss_pred             hhcC---CCCCE-EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC---CCCCCCceeeec--CCCcCCC
Confidence            7652   33443 3344444454  3457789999999999999998632222110   011112222222  3322222


Q ss_pred             cccccc--cccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q psy17227        201 LTSLST--ATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEV  259 (268)
Q Consensus       201 ~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (268)
                      ...+..  +.++.         +......++++.++ +..|+.+|.+.++.+.. .|.+..
T Consensus       294 ~~~i~~~~~~~~~---------v~d~~~~~~hy~~T-L~~W~~~f~~~~~~~~~-~~~~~~  343 (383)
T PRK11705        294 VRQIAQASEGLFV---------MEDWHNFGADYDRT-LMAWHENFEAAWPELAD-NYSERF  343 (383)
T ss_pred             HHHHHHHHHCCcE---------EEEEecChhhHHHH-HHHHHHHHHHHHHHHHH-hCCHHH
Confidence            222211  11111         11112235555555 56699999999888743 665543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.67  E-value=4.3e-16  Score=140.15  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=84.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..++..+|.+|||||||+|.++..++.. +...|+|||+|+.+..-+++...      ..+ ...+++++.+|+.+
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~------~~~-~~~~i~~~~~d~e~  183 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRK------LLG-NDQRAHLLPLGIEQ  183 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHH------hcC-CCCCeEEEeCCHHH
Confidence            34666777667899999999999999998876 55459999999863322221111      111 12479999999999


Q ss_pred             CcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+ ++.  +|+|++. .++|..++...+++++++|||||.+++.
T Consensus       184 lp~-~~~--FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        184 LPA-LKA--FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             CCC-cCC--cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            987 443  4566665 4468889999999999999999999975

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.67  E-value=2.6e-16  Score=137.20  Aligned_cols=114  Identities=13%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+. .++.+|||+|||+|.++..+++. +.. |+|+|+|+.|+..++  +++    ...+. ..+++++++|+
T Consensus        33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~-v~~vD~s~~~l~~a~--~~~----~~~g~-~~~v~~~~~d~  102 (255)
T PRK11036         33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQ-VILCDLSAEMIQRAK--QAA----EAKGV-SDNMQFIHCAA  102 (255)
T ss_pred             HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCE-EEEEECCHHHHHHHH--HHH----HhcCC-ccceEEEEcCH
Confidence            3445777776 55679999999999999999875 555 999999998655544  322    22333 24799999999


Q ss_pred             CCCc-ccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEE-HREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~-~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++ +.+.  .+|+|+++.. .|.+++...+.++.++|||||++++.
T Consensus       103 ~~l~~~~~~--~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        103 QDIAQHLET--PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             HHHhhhcCC--CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            8864 3343  3566776655 56688999999999999999999865

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.66  E-value=5.3e-16  Score=139.65  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ....+++.+.+ .++.+|||||||+|.++..+++..+...++|+|+|+.|...++  ++..         ..+++++.+|
T Consensus       100 ~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~--~k~~---------~~~i~~i~gD  168 (340)
T PLN02490        100 MRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK--QKEP---------LKECKIIEGD  168 (340)
T ss_pred             HHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH--Hhhh---------ccCCeEEecc
Confidence            33456676665 4688999999999999998888776556999999997544443  2211         2478999999


Q ss_pred             CCCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        122 FLTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +++++++++.+  |+|+++. +.++++....+++++++|||||++++.++.
T Consensus       169 ~e~lp~~~~sF--DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        169 AEDLPFPTDYA--DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             HHhCCCCCCce--eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence            99998866544  5566554 467889999999999999999999876443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.65  E-value=4.3e-16  Score=139.64  Aligned_cols=105  Identities=15%  Similarity=0.060  Sum_probs=81.1

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .++.+|||||||+|.++..+++ .|+. |+|||+|+.++..++  .+++    ..+. ..+++++++|++++++.+..||
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~-~g~~-V~GID~s~~~i~~Ar--~~~~----~~~~-~~~i~~~~~dae~l~~~~~~FD  200 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLAR-MGAT-VTGVDAVDKNVKIAR--LHAD----MDPV-TSTIEYLCTTAEKLADEGRKFD  200 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHH-cCCE-EEEEeCCHHHHHHHH--HHHH----hcCc-ccceeEEecCHHHhhhccCCCC
Confidence            4677999999999999998876 4665 999999998666654  2222    1111 2479999999999887655555


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + |+.++.+.|.+++...++++.++|||||.++++
T Consensus       201 ~-Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        201 A-VLSLEVIEHVANPAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             E-EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            4 444455578899999999999999999999986

>KOG3924|consensus

Probab=99.65  E-value=3.2e-16  Score=139.87  Aligned_cols=170  Identities=40%  Similarity=0.689  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHhhcCCccccc-cCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEE
Q psy17227          4 RGLLRHIIQQTYNQSVTEPEKLN-VYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKIC   82 (268)
Q Consensus         4 ~~~~~~~~~~~y~~~~~~~~~~~-~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v   82 (268)
                      +++...+..=.|...++|+..++ .|.+|++.+|||+.......+++.+++.+++.+.|+|+|.|.+...+|...++..-
T Consensus       140 ~sva~~~~~iaY~lsipd~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~s  219 (419)
T KOG3924|consen  140 GSVAWTITHIAYELSIPDPAILNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKS  219 (419)
T ss_pred             hhhhhccceeEEEeccCCHHHHHHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccc
Confidence            44455556667888999999999 78999999999999999999999999999999999999999999999988888888


Q ss_pred             EEEeCCCChhHHHHHH-HHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcCC
Q psy17227         83 WGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDLK  160 (268)
Q Consensus        83 ~GiD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~Lk  160 (268)
                      +|+++...+..++.++ +..++.|+..|.+...++.++|++.+..+... ...+++|++|++.|.|++...+.+++..+|
T Consensus       220 vG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck  299 (419)
T KOG3924|consen  220 VGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCK  299 (419)
T ss_pred             cceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCC
Confidence            9999999988888754 56777888899877789999999987553222 235789999999999999999999999999


Q ss_pred             CCcEEEEeCCCCC
Q psy17227        161 DGARIVSSKSFCP  173 (268)
Q Consensus       161 pGG~~i~~~~~~~  173 (268)
                      +|.++|++.++.+
T Consensus       300 ~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  300 DGTRIISSKPLVP  312 (419)
T ss_pred             CcceEeccccccc
Confidence            9999999988876

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.65  E-value=1.8e-15  Score=133.05  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=86.7

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ..+++++++|||||||+|..++.+++..+.. +|+|+|+|+.++..++  ++..    ..+  ..+++++++|+.++|++
T Consensus        72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~--~~~~----~~g--~~~v~~~~~d~~~l~~~  143 (272)
T PRK11873         72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKAR--ANAR----KAG--YTNVEFRLGEIEALPVA  143 (272)
T ss_pred             hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHH--HHHH----HcC--CCCEEEEEcchhhCCCC
Confidence            3467899999999999999988877776653 6999999998555443  3332    223  24899999999998876


Q ss_pred             ccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        129 EKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       129 ~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +.  .+|+|+++.. .|.++....+++++++|||||++++.+..
T Consensus       144 ~~--~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        144 DN--SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CC--ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            55  3567777655 56778899999999999999999987443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=2.2e-15  Score=126.50  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=80.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.++..++.+|||+|||+|..++.+|+. +.. |+|+|+|+.++..++  +.+.    ..+.  .+++++++|+.++
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~-V~gvD~S~~~i~~a~--~~~~----~~~~--~~v~~~~~d~~~~   90 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFD-VTAWDKNPMSIANLE--RIKA----AENL--DNLHTAVVDLNNL   90 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCE-EEEEeCCHHHHHHHH--HHHH----HcCC--CcceEEecChhhC
Confidence            5566666777889999999999999999875 655 999999998555543  2222    2232  3689999999887


Q ss_pred             cccccccceEEEEEeccc-cCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFA-FGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~-~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++ .  .+|+|+++..+ |.+  +....++++.+.|||||.+++.
T Consensus        91 ~~~-~--~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         91 TFD-G--EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CcC-C--CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            764 2  35667766553 333  4677899999999999996654

>TIGR00452 methyltransferase, putative

Probab=99.63  E-value=2.2e-15  Score=134.55  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=85.1

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +++..++..+|++|||||||+|.++..++.. +...|+|||+|+.|...+++   +++   ..+ ...++.+..+++.++
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~---~~~---~~~-~~~~v~~~~~~ie~l  183 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEA---VRK---LLD-NDKRAILEPLGIEQL  183 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH---HHH---Hhc-cCCCeEEEECCHHHC
Confidence            5777888888999999999999999888765 55569999999864332221   111   111 134789999999998


Q ss_pred             cccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |...   .+|+|+++. ++|.+++...+++++++|||||.+++.
T Consensus       184 p~~~---~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       184 HELY---AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             CCCC---CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence            8532   356676665 478899999999999999999999975

Known examples to date are restricted to the proteobacteria.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.63  E-value=3.9e-15  Score=129.28  Aligned_cols=110  Identities=20%  Similarity=0.254  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHH--hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAA--TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~--~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      +.++.+|||||||+|..+..+++.  .+..+++|+|+|+.|+..++  +++.    ..+. ..+++++++|+.++|+++ 
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~-  125 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR--RHID----AYKA-PTPVDVIEGDIRDIAIEN-  125 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEeCChhhCCCCC-
Confidence            567889999999999999888774  34446999999998655554  3332    2222 247999999999887642 


Q ss_pred             ccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        131 ITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       131 ~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                         +|+|+++.. +|.+  +....+++++++|||||.|++++.+.+
T Consensus       126 ---~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~  168 (247)
T PRK15451        126 ---ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  168 (247)
T ss_pred             ---CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence               355665544 3433  346779999999999999999865543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.62  E-value=7.4e-15  Score=122.11  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ++++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++  ++++    ..+.  .+++++++|+.+++. +.  
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~--~~~~----~~~l--~~i~~~~~d~~~~~~-~~--  111 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR--EVAA----ELGL--KNVTVVHGRAEEFGQ-EE--  111 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH--HHHH----HcCC--CCEEEEeccHhhCCC-CC--
Confidence            44589999999999999999888766666999999998655554  3332    2333  359999999998775 33  


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++.+   .++...++++++.|||||++++.
T Consensus       112 ~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        112 KFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             CccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEE
Confidence            4678888653   56778899999999999999985

>PRK08317 hypothetical protein; Provisional

Probab=99.61  E-value=7.9e-15  Score=125.45  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++..+++.++.+|||+|||+|..+..++... +..+++|+|+|+.++..++  ++..       ....+++++++|+.
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~--~~~~-------~~~~~~~~~~~d~~   79 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK--ERAA-------GLGPNVEFVRGDAD   79 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH--HHhh-------CCCCceEEEecccc
Confidence            457788899999999999999999999999877 3446999999997544443  2111       12358999999999


Q ss_pred             CCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        124 TEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++++.+..  +|+|++.. +.|.+++...+++++++|||||.+++.+
T Consensus        80 ~~~~~~~~--~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         80 GLPFPDGS--FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             cCCCCCCC--ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            88876554  45666554 4577899999999999999999999764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.61  E-value=2.1e-14  Score=110.52  Aligned_cols=113  Identities=20%  Similarity=0.363  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+++.++++|||+|||+|.++..+++..+..+++|+|+|+.+...++  ++++    ..+  ..+++++++|+.
T Consensus         8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~~~~   79 (124)
T TIGR02469         8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIE--RNAR----RFG--VSNIVIVEGDAP   79 (124)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHH--HHHH----HhC--CCceEEEecccc
Confidence            34577888888899999999999999999998876556999999997544443  3332    223  247999999987


Q ss_pred             C-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 T-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + ++....  .+|+|++....  ......++++++.|||||+|++.
T Consensus        80 ~~~~~~~~--~~D~v~~~~~~--~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        80 EALEDSLP--EPDRVFIGGSG--GLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ccChhhcC--CCCEEEECCcc--hhHHHHHHHHHHHcCCCCEEEEE
Confidence            5 332222  45667664321  23457789999999999999975

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00740 methyltransferase, putative

Probab=99.61  E-value=7.7e-15  Score=126.70  Aligned_cols=111  Identities=20%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      +.++.+|||||||+|..+..+++..  +..+++|+|+|+.|+..++  ++++    ..+. ..+++++++|+.++++++ 
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~-  122 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR--QHIA----AYHS-EIPVEILCNDIRHVEIKN-  122 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEECChhhCCCCC-
Confidence            4578899999999999999988863  3345999999998555544  3332    2221 247999999999988642 


Q ss_pred             ccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        131 ITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       131 ~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                         +|+|+++.. +|.  .+....+++++++|||||.+++.+++.+.
T Consensus       123 ---~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~  166 (239)
T TIGR00740       123 ---ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE  166 (239)
T ss_pred             ---CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence               345555444 333  24577899999999999999998766543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.60  E-value=1e-14  Score=120.88  Aligned_cols=100  Identities=19%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      ++.+|||||||+|.+++.+|...+..+|+|||+|+.++.+++  ++++    ..+.  .+++++++|+.+++. +  ..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~--~~~~----~~~~--~~i~~i~~d~~~~~~-~--~~f  110 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR--EVKA----ELGL--NNVEIVNGRAEDFQH-E--EQF  110 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH--HHHH----HhCC--CCeEEEecchhhccc-c--CCc
Confidence            488999999999999999887666556999999998655543  3332    2332  479999999998753 2  246


Q ss_pred             EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|+++.+   .+....++.+++.|||||++++.
T Consensus       111 D~I~s~~~---~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       111 DVITSRAL---ASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             cEEEehhh---hCHHHHHHHHHHhcCCCCEEEEE
Confidence            77888752   45667788889999999999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.59  E-value=2.9e-14  Score=122.20  Aligned_cols=146  Identities=20%  Similarity=0.277  Sum_probs=100.5

Q ss_pred             HHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCC
Q psy17227         10 IIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKA   88 (268)
Q Consensus        10 ~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s   88 (268)
                      -+...|+.+...++.++.+..+.      ........++..+...++.+|||||||+|.++..++...+ ..+++|+|++
T Consensus        12 ~~~~~~~~~~~~y~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s   85 (239)
T PRK00216         12 KVAEMFDSIAPKYDLMNDLLSFG------LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS   85 (239)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhcC------CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC
Confidence            44567777665555443321111      1223345677777777889999999999999999988775 3459999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227         89 DLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus        89 ~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      +.++..++  +++.    ..+. ..+++++.+|+.++++...  .+|+|+++.. .+.+++...+.++.+.|+|||.+++
T Consensus        86 ~~~~~~a~--~~~~----~~~~-~~~~~~~~~d~~~~~~~~~--~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216         86 EGMLAVGR--EKLR----DLGL-SGNVEFVQGDAEALPFPDN--SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             HHHHHHHH--Hhhc----cccc-ccCeEEEecccccCCCCCC--CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence            97444433  2221    1111 2479999999998876544  3566666544 5667889999999999999999987


Q ss_pred             eCC
Q psy17227        168 SKS  170 (268)
Q Consensus       168 ~~~  170 (268)
                      .+.
T Consensus       157 ~~~  159 (239)
T PRK00216        157 LEF  159 (239)
T ss_pred             EEe
Confidence            633

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.59  E-value=2.5e-15  Score=124.34  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=92.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...++.+.++.+..+|.|||||+|+.+..++++++...++|||-|++|  ++++..           ...+++|..+|+.
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M--la~Aa~-----------rlp~~~f~~aDl~   85 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM--LAKAAQ-----------RLPDATFEEADLR   85 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH--HHHHHH-----------hCCCCceecccHh
Confidence            467999999999999999999999999999999999889999999983  433211           2468999999999


Q ss_pred             CCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.-+   .+.|++|+|+.+ |.||....|..+...|.|||.+.+-
T Consensus        86 ~w~p~---~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          86 TWKPE---QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             hcCCC---CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            87632   256899999874 6699999999999999999999986

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.59  E-value=1.7e-14  Score=120.88  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+...++.+|||+|||+|..++.+|+. |.. |+|+|+|+.++..++  +.+.    ..+.   ++++.++|+..
T Consensus        20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~-V~~iD~s~~~l~~a~--~~~~----~~~~---~v~~~~~d~~~   88 (195)
T TIGR00477        20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYD-VRAWDHNPASIASVL--DMKA----RENL---PLRTDAYDINA   88 (195)
T ss_pred             HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HHHH----HhCC---CceeEeccchh
Confidence            35666666667789999999999999999874 665 999999997544433  2222    2222   47888889876


Q ss_pred             CcccccccceEEEEEecccc-C--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAF-G--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++ +  .+|+|+++.++| .  .+....++++++.|||||++++.
T Consensus        89 ~~~~-~--~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        89 AALN-E--DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccc-C--CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            6653 2  356677665533 2  34567899999999999996654

Part of a tellurite-reducing operon tehA and tehB

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.57  E-value=3.1e-14  Score=120.79  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=98.6

Q ss_pred             HHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCC
Q psy17227         12 QQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADL   90 (268)
Q Consensus        12 ~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~   90 (268)
                      +++|+.+...++..+....+..      .......++..+...++.+|||+|||+|..+..+++..+. .+++|+|+++.
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~   75 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLLSFGL------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE   75 (223)
T ss_pred             HhHHHHHHhhhhHHHHHHhccc------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence            5677777766555543322211      1222345666777778999999999999999999887764 35999999986


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227         91 PAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus        91 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++..++  ++..        ...+++++.+|+.+++++++  .+|+|+++.. .+.+++...++++.+.|||||++++.+
T Consensus        76 ~~~~~~--~~~~--------~~~~i~~~~~d~~~~~~~~~--~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934        76 MLEVAK--KKSE--------LPLNIEFIQADAEALPFEDN--SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             HHHHHH--HHhc--------cCCCceEEecchhcCCCCCC--cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            433332  2111        13479999999999886543  4667766544 566788999999999999999999863

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.57  E-value=1.8e-14  Score=128.89  Aligned_cols=115  Identities=13%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++++++.+|||||||+|.+++.+++.++..+++++|+ +.++..  ++++++    ..|. .++++++.+|+.+
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~--a~~~~~----~~gl-~~rv~~~~~d~~~  210 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL--VNENAA----EKGV-ADRMRGIAVDIYK  210 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH--HHHHHH----hCCc-cceEEEEecCccC
Confidence            4477778888999999999999999999999987667999998 443333  333333    3443 2589999999987


Q ss_pred             CcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        125 EEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      .+++.    +|+|++..++| +++  ....+++++++|||||++++.+..
T Consensus       211 ~~~~~----~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       211 ESYPE----ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             CCCCC----CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            65532    36666666654 332  356799999999999999998543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.57  E-value=1.6e-14  Score=123.21  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=78.5

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      ++|||||||+|..+..+++.++..+++|+|+|+.+...++  +++    ...|. ..+++++++|+.+.|+++ .+  |+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~--~~~----~~~gl-~~~i~~~~~d~~~~~~~~-~f--D~   70 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGR--ERI----RALGL-QGRIRIFYRDSAKDPFPD-TY--DL   70 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHH----HhcCC-CcceEEEecccccCCCCC-CC--CE
Confidence            3799999999999999998875445999999987544443  322    23343 258999999997766543 34  55


Q ss_pred             EEE-eccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        137 VFV-NNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       137 v~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      |++ +.+.|.++....+++++++|||||++++.+.
T Consensus        71 I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       71 VFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             eehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            655 4456778899999999999999999998744

>PRK06922 hypothetical protein; Provisional

Probab=99.56  E-value=1.3e-14  Score=138.52  Aligned_cols=113  Identities=16%  Similarity=0.284  Sum_probs=84.0

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--c
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--H  127 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~  127 (268)
                      .+++.++.+|||||||+|.++..+++..+...++|+|+|+.|+..++  ++..    ..   ..+++++++|+.++|  +
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ar--arl~----~~---g~~ie~I~gDa~dLp~~f  483 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLK--KKKQ----NE---GRSWNVIKGDAINLSSSF  483 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHhh----hc---CCCeEEEEcchHhCcccc
Confidence            34556789999999999999988888776667999999998555543  2221    11   247889999999887  5


Q ss_pred             cccccceEEEEEeccccC--------------cCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        128 REKITQASIVFVNNFAFG--------------PTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~--------------~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      +++  .+|+|+++.++|+              .+....+++++++|||||++++.+...+
T Consensus       484 ede--SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~  541 (677)
T PRK06922        484 EKE--SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT  541 (677)
T ss_pred             CCC--CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence            544  4677777655442              2467889999999999999999865443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=7.5e-14  Score=117.89  Aligned_cols=114  Identities=22%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +.....+++.++++++++|||||||+|..+..+++..+ ..+|+|+|+++.++..++  +++++    .+. ..++++++
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~--~~l~~----~~~-~~~v~~~~  130 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA--QNIER----LGY-WGVVEVYH  130 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHHH----cCC-CCcEEEEE
Confidence            34566788889999999999999999999998888764 336999999997554443  44332    232 13699999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+......  .+|+|+++....     ....+++++|||||++++.
T Consensus       131 ~d~~~~~~~~~--~fD~Ii~~~~~~-----~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        131 GDGKRGLEKHA--PFDAIIVTAAAS-----TIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCcccCCccCC--CccEEEEccCcc-----hhhHHHHHhcCcCcEEEEE
Confidence            99987543332  456777764422     2235788999999999874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.55  E-value=8.2e-15  Score=123.82  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=80.3

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      -+|.+|||||||-|.++..+|+. |.. |+|+|+++.++..|+.  ++.    +.|   .++.+.+..++++......  
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~-VtgiD~se~~I~~Ak~--ha~----e~g---v~i~y~~~~~edl~~~~~~--  124 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL-GAS-VTGIDASEKPIEVAKL--HAL----ESG---VNIDYRQATVEDLASAGGQ--  124 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC-CCe-eEEecCChHHHHHHHH--hhh----hcc---ccccchhhhHHHHHhcCCC--
Confidence            48899999999999999999885 765 9999999998888763  222    112   2577888888887654334  


Q ss_pred             eEEEEE-eccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFV-NNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|||+| +.+.|-+++...++.+.+.+||||.++++
T Consensus       125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             ccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence            455655 55579999999999999999999999876

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.54  E-value=1.3e-13  Score=117.13  Aligned_cols=115  Identities=19%  Similarity=0.264  Sum_probs=84.1

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +.+.....+++.++++++++|||||||+|.++..+++..+. .+|+|+|+++.+...++  ++++    ..+  ..++++
T Consensus        60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~--~~l~----~~g--~~~v~~  131 (212)
T PRK13942         60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK--KTLK----KLG--YDNVEV  131 (212)
T ss_pred             CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHH----HcC--CCCeEE
Confidence            44556678999999999999999999999999988887654 36999999998555544  3333    233  348999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+.+....  .+|+|++....  ++   ....+++.|||||++++.
T Consensus       132 ~~gd~~~~~~~~~--~fD~I~~~~~~--~~---~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        132 IVGDGTLGYEENA--PYDRIYVTAAG--PD---IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             EECCcccCCCcCC--CcCEEEECCCc--cc---chHHHHHhhCCCcEEEEE
Confidence            9999987554333  45677775442  12   234667899999999884

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.54  E-value=3.6e-14  Score=124.94  Aligned_cols=94  Identities=16%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCC---cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGC---KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~---~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      .++.+|||+|||+|.++..+++..+.   ..++|+|+|+.++..|.      +       ..++++|.++|+.++|++++
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~------~-------~~~~~~~~~~d~~~lp~~~~  150 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA------K-------RYPQVTFCVASSHRLPFADQ  150 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH------H-------hCCCCeEEEeecccCCCcCC
Confidence            45678999999999999998876542   24899999997555442      1       13578999999999998776


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++  |+|++.   +.+   ..+.++.|+|||||+|++.
T Consensus       151 sf--D~I~~~---~~~---~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        151 SL--DAIIRI---YAP---CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             ce--eEEEEe---cCC---CCHHHHHhhccCCCEEEEE
Confidence            54  566653   222   2367899999999999976

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.53  E-value=6.4e-14  Score=119.94  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             HHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         45 SRMIDQINA---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        45 ~~ll~~l~~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+++.+..   ..+.+|||||||+|.++..++...+..+++|+|+|+.+...++  +.         . ..+++++.+|
T Consensus        21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~--~~---------~-~~~~~~~~~d   88 (240)
T TIGR02072        21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAK--TK---------L-SENVQFICGD   88 (240)
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHH--Hh---------c-CCCCeEEecc
Confidence            345444432   3457899999999999999988766556899999986433332  11         1 1378999999


Q ss_pred             CCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.+++++.  +|+|+++..+ |..++...+.++.++|||||.+++.
T Consensus        89 ~~~~~~~~~~--fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~  134 (240)
T TIGR02072        89 AEKLPLEDSS--FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS  134 (240)
T ss_pred             hhhCCCCCCc--eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            9998876554  5677776654 5568999999999999999999986

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK04266 fibrillarin; Provisional

Probab=99.53  E-value=1.3e-13  Score=117.99  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-c
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-R  128 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~  128 (268)
                      .+++++|++|||+|||+|.++..++...+..+|+|+|+++.|+.  .+.+.+++        ..++.++.+|+.+... .
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~--~l~~~a~~--------~~nv~~i~~D~~~~~~~~  136 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR--ELLEVAEE--------RKNIIPILADARKPERYA  136 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH--HHHHHhhh--------cCCcEEEECCCCCcchhh
Confidence            68999999999999999999999998876446999999997433  22233321        2479999999976210 0


Q ss_pred             ccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .-...+|+|+++..  .++ ....+.++.++|||||+++++
T Consensus       137 ~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        137 HVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             hccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            00123677876422  122 234578999999999999985

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.52  E-value=2.3e-13  Score=115.69  Aligned_cols=113  Identities=17%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +..+..+++.++++++.+|||||||+|.++..+|+..+. .+|+|+|+++.++..++  ++++    ..+.  .++++++
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~--~~~~----~~g~--~~v~~~~  134 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE--RRLR----KLGL--DNVIVIV  134 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HCCC--CCeEEEE
Confidence            345677888999999999999999999999999987654 35999999997555443  4443    2343  4899999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+......  .+|+|+++...     ......+++.|||||++++.
T Consensus       135 ~d~~~~~~~~~--~fD~Ii~~~~~-----~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       135 GDGTQGWEPLA--PYDRIYVTAAG-----PKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCcccCCcccC--CCCEEEEcCCc-----ccccHHHHHhcCcCcEEEEE
Confidence            99987542222  45677765432     22345678899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.52  E-value=4.3e-13  Score=109.60  Aligned_cols=117  Identities=19%  Similarity=0.367  Sum_probs=89.7

Q ss_pred             CcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .+.+.++ -.+.+|.++||++++|||||||.+++.+|...+..+|++||-+++++.+.+  +|    ++.+|  .+|+++
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~--~N----~~~fg--~~n~~v   88 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE--RN----AARFG--VDNLEV   88 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH--HH----HHHhC--CCcEEE
Confidence            3444443 477899999999999999999999999997777778999999997444333  33    33455  469999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.||+-+.--  +..++|.+|+...   ......+..+...|||||++|..
T Consensus        89 v~g~Ap~~L~--~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~n  134 (187)
T COG2242          89 VEGDAPEALP--DLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVAN  134 (187)
T ss_pred             EeccchHhhc--CCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEE
Confidence            9999976321  2225678999765   56778888889999999999985

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.52  E-value=1.2e-13  Score=116.35  Aligned_cols=111  Identities=17%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-CCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-LTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~~l  125 (268)
                      +.+.+.. ++.+|||||||+|..+..+++..+..+++|+|+|+.++..++  +++.    ..+  ..+++++++|+ ..+
T Consensus        33 ~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~--~~~~----~~~--~~~v~~~~~d~~~~l  103 (202)
T PRK00121         33 WAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL--KKIE----EEG--LTNLRLLCGDAVEVL  103 (202)
T ss_pred             HHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH--HHHH----HcC--CCCEEEEecCHHHHH
Confidence            3344443 678999999999999999988776556999999998555544  3322    222  25799999999 666


Q ss_pred             c--ccccccceEEEEEeccccC-c--------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HREKITQASIVFVNNFAFG-P--------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~~~~d~dvv~~~~~~~~-~--------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  +++..  +|+|+++....+ .        .....+++++++|||||.|++.
T Consensus       104 ~~~~~~~~--~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        104 LDMFPDGS--LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHcCccc--cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            6  44443  456666432111 1        1466789999999999999975

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=9.6e-15  Score=108.75  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             EEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCCCcccccccceEEEE
Q psy17227         60 VDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLTEEHREKITQASIVF  138 (268)
Q Consensus        60 LDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~l~~~~~~~d~dvv~  138 (268)
                      ||||||+|.++..++...+..+++|+|+|+.|+..++  +++.+    .+. ....+++...|..+.+.. .  .+|+|+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~--~fD~V~   71 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERAR--ERLAE----LGNDNFERLRFDVLDLFDYDPP-E--SFDLVV   71 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTC--CCHHH----CT---EEEEE--SSS---CCC-------SEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHhhh----cCCcceeEEEeecCChhhcccc-c--ccceeh
Confidence            7999999999999999877777999999999664433  22221    111 111334444443332211 2  345555


Q ss_pred             E-eccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227        139 V-NNFAFGPTVDHALKERFQDLKDGARI  165 (268)
Q Consensus       139 ~-~~~~~~~~~~~~l~e~~r~LkpGG~~  165 (268)
                      + +.++|.+++...++++++.|||||+|
T Consensus        72 ~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   72 ASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            5 44567789999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.51  E-value=2e-14  Score=107.57  Aligned_cols=94  Identities=20%  Similarity=0.244  Sum_probs=66.6

Q ss_pred             EEEEcCCCCHHHHHHHHHh--C-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         59 FVDLGSGVGQVVLQVAAAT--G-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        59 vLDiGCG~G~~~~~la~~~--~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      |||+|||+|..++.++..+  + ..+++|+|+|+.|+..++  ++..    ..   ..+++|+++|+.++++.++  .+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~--~~~~----~~---~~~~~~~~~D~~~l~~~~~--~~D   69 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK--KRFS----ED---GPKVRFVQADARDLPFSDG--KFD   69 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH--HHSH----HT---TTTSEEEESCTTCHHHHSS--SEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH--Hhch----hc---CCceEEEECCHhHCcccCC--Cee
Confidence            7999999999999998876  3 246999999998555543  3222    11   2389999999999987655  456


Q ss_pred             EEEE-ec-cccC--cCHHHHHHHHHhcCCCCc
Q psy17227        136 IVFV-NN-FAFG--PTVDHALKERFQDLKDGA  163 (268)
Q Consensus       136 vv~~-~~-~~~~--~~~~~~l~e~~r~LkpGG  163 (268)
                      +|++ .. +.|.  ++....++++.++|||||
T Consensus        70 ~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   70 LVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            7776 44 3332  346777899999999998

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.51  E-value=5.1e-13  Score=111.07  Aligned_cols=116  Identities=16%  Similarity=0.299  Sum_probs=83.6

Q ss_pred             CcHHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .+.+.++. +++.+++.++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++  +++++    .+.  .++++
T Consensus        14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~--~n~~~----~~~--~~i~~   85 (187)
T PRK08287         14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK--ENRQR----FGC--GNIDI   85 (187)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHHH----hCC--CCeEE
Confidence            33444444 56788888999999999999999999988776556999999997555443  33332    232  47999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.. +++ .  .+|+|+++...  ..+...+.++++.|||||++++.
T Consensus        86 ~~~d~~~-~~~-~--~~D~v~~~~~~--~~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287         86 IPGEAPI-ELP-G--KADAIFIGGSG--GNLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             EecCchh-hcC-c--CCCEEEECCCc--cCHHHHHHHHHHhcCCCeEEEEE
Confidence            9999852 332 2  35677775432  23566788899999999999875

>KOG1270|consensus

Probab=99.50  E-value=1.4e-14  Score=123.31  Aligned_cols=101  Identities=18%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc----cEEEEEcCCCCCcccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG----EFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~----~i~~~~gD~~~l~~~~~~  131 (268)
                      |++|||+|||+|-++..+|+ .|.. |+|||+++.|++.|++.+..      ......    ++++.+.|.+....   .
T Consensus        90 g~~ilDvGCGgGLLSepLAr-lga~-V~GID~s~~~V~vA~~h~~~------dP~~~~~~~y~l~~~~~~~E~~~~---~  158 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLAR-LGAQ-VTGIDASDDMVEVANEHKKM------DPVLEGAIAYRLEYEDTDVEGLTG---K  158 (282)
T ss_pred             CceEEEeccCccccchhhHh-hCCe-eEeecccHHHHHHHHHhhhc------Cchhccccceeeehhhcchhhccc---c
Confidence            48899999999999999998 5766 99999999988887643211      111122    47888888887542   2


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ||+ |+.++.+.|-.++...+..+.+.|||||+++++
T Consensus       159 fDa-VvcsevleHV~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  159 FDA-VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             cce-eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence            554 444455578899999999999999999999876

>TIGR03438 probable methyltransferase

Probab=99.50  E-value=3e-13  Score=120.74  Aligned_cols=152  Identities=13%  Similarity=0.021  Sum_probs=92.5

Q ss_pred             CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-Cc
Q psy17227          2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CK   80 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~   80 (268)
                      ||+++-..-=++.|.+++.    +-.|.+....  -++.......+++.+  .++.+|||+|||+|..+..+++... ..
T Consensus        18 p~~~~yd~~G~~lf~~i~~----~peYy~tr~E--~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~   89 (301)
T TIGR03438        18 PPKYFYDARGSELFEQICE----LPEYYPTRTE--AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPA   89 (301)
T ss_pred             CchhcccchHHHHHHHHHC----CCccccHHHH--HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCC
Confidence            4555555555566666652    2334443221  012222333455554  4678899999999999999988763 23


Q ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cccccccc--ceEEEEEecccc---CcCHHHHHHH
Q psy17227         81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKIT--QASIVFVNNFAF---GPTVDHALKE  154 (268)
Q Consensus        81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~--d~dvv~~~~~~~---~~~~~~~l~e  154 (268)
                      +++|||+|+.|+..+.  +++.+    .. ...++.++++|+.+ +++.....  +..++++.+.++   ..+....+++
T Consensus        90 ~~~~iDiS~~mL~~a~--~~l~~----~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~  162 (301)
T TIGR03438        90 RYVPIDISADALKESA--AALAA----DY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRR  162 (301)
T ss_pred             eEEEEECCHHHHHHHH--HHHHh----hC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHH
Confidence            4999999998555443  32221    11 12368889999987 44433321  333455444432   2345667999


Q ss_pred             HHhcCCCCcEEEEe
Q psy17227        155 RFQDLKDGARIVSS  168 (268)
Q Consensus       155 ~~r~LkpGG~~i~~  168 (268)
                      ++++|+|||.|++.
T Consensus       163 i~~~L~pgG~~lig  176 (301)
T TIGR03438       163 IRQLLGPGGGLLIG  176 (301)
T ss_pred             HHHhcCCCCEEEEe
Confidence            99999999999875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.50  E-value=1.5e-13  Score=115.01  Aligned_cols=104  Identities=23%  Similarity=0.206  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc---ccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE---HREKI  131 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~---~~~~~  131 (268)
                      +..++||||||+|.++..+|+..+...++|+|+++.++..+  ++++.    ..+.  .+++++++|+.+++   +++. 
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a--~~~~~----~~~l--~ni~~i~~d~~~~~~~~~~~~-   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA--NNKAN----KLGL--KNLHVLCGDANELLDKFFPDG-   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH--HHHHH----HhCC--CCEEEEccCHHHHHHhhCCCC-
Confidence            45689999999999999999988766699999999744443  33332    2333  48999999998754   2222 


Q ss_pred             cceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+|.|+++..-.|++.         ...++++.++|||||.|++.
T Consensus        87 -~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        87 -SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             -ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence             4667777643233221         45789999999999999875

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.49  E-value=5.8e-13  Score=111.58  Aligned_cols=117  Identities=18%  Similarity=0.314  Sum_probs=83.0

Q ss_pred             CcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .+...+. .+++.+++.++.+|||+|||+|.++..+++..+..+|+|+|+|+.++..++  ++++    ..+.  .++++
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~--~n~~----~~~~--~~v~~   94 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR--RNCD----RFGV--KNVEV   94 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC--CCeEE
Confidence            3444555 467888889999999999999999999887655556999999997555443  4333    2332  47999


Q ss_pred             EEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+ ++....  ..|.+++..   ..+....+.++++.|||||++++.
T Consensus        95 ~~~d~~~~~~~~~~--~~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~  141 (196)
T PRK07402         95 IEGSAPECLAQLAP--APDRVCIEG---GRPIKEILQAVWQYLKPGGRLVAT  141 (196)
T ss_pred             EECchHHHHhhCCC--CCCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEE
Confidence            9999865 221111  224455432   245678899999999999999986

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.49  E-value=7.7e-13  Score=111.08  Aligned_cols=119  Identities=17%  Similarity=0.316  Sum_probs=86.2

Q ss_pred             CcHHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         39 TSFDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        39 ~~~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      .+...++. .+.++++.++.+|||+|||+|.+++.+|+..+ ..+|+|+|+++.+...++  ++++    ..+. ..+++
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~--~n~~----~~g~-~~~v~   95 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR--RNAE----KFGV-LNNIV   95 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HhCC-CCCeE
Confidence            44444544 45788999999999999999999999887654 346999999998555443  3333    2332 25899


Q ss_pred             EEEcCCCCCc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++|+.+.. ...  ..+|.|+++.  ...++...+.++.+.|||||++++.
T Consensus        96 ~~~~d~~~~l~~~~--~~~D~V~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377         96 LIKGEAPEILFTIN--EKFDRIFIGG--GSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             EEEechhhhHhhcC--CCCCEEEECC--CcccHHHHHHHHHHHcCCCcEEEEE
Confidence            9999997642 212  2456777753  3356788899999999999999874

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.48  E-value=5.2e-14  Score=113.20  Aligned_cols=97  Identities=21%  Similarity=0.238  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||||||+|.++..++. .|. +++|+|+|+.++..                  .++.....+....+.+++  
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~-~~~-~~~g~D~~~~~~~~------------------~~~~~~~~~~~~~~~~~~--   77 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAK-RGF-EVTGVDISPQMIEK------------------RNVVFDNFDAQDPPFPDG--   77 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHH-TTS-EEEEEESSHHHHHH------------------TTSEEEEEECHTHHCHSS--
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHH-hCC-EEEEEECCHHHHhh------------------hhhhhhhhhhhhhhcccc--
Confidence            67889999999999999998855 567 49999999852211                  123333333334444444  


Q ss_pred             ceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        133 QASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       133 d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      .+|+|+++.. .|.+++...++++.+.|||||.++++.+.
T Consensus        78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   78 SFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             SEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             chhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            4566766655 67889999999999999999999987443

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=3.1e-13  Score=119.87  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ..+...++.+|||||||+|..+..+|+. |.. |+|+|+|+.++..++  ++++    ..+   .++++.++|+...++ 
T Consensus       114 ~~~~~~~~~~vLDlGcG~G~~~~~la~~-g~~-V~avD~s~~ai~~~~--~~~~----~~~---l~v~~~~~D~~~~~~-  181 (287)
T PRK12335        114 EAVQTVKPGKALDLGCGQGRNSLYLALL-GFD-VTAVDINQQSLENLQ--EIAE----KEN---LNIRTGLYDINSASI-  181 (287)
T ss_pred             HHhhccCCCCEEEeCCCCCHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHHH----HcC---CceEEEEechhcccc-
Confidence            3333334458999999999999998874 665 999999997555443  3332    222   278999999987655 


Q ss_pred             ccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++  .+|+|++..++ |.  ++....++++.++|||||.+++.
T Consensus       182 ~~--~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        182 QE--EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cC--CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            23  35677776553 33  35677899999999999996654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.48  E-value=2.9e-13  Score=114.20  Aligned_cols=103  Identities=14%  Similarity=0.266  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||||||+|..+..++...+...++|||+|+.|+..|+  ++           ..++.++++|+.+ |++++. 
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~--~~-----------~~~~~~~~~d~~~-~~~~~s-  105 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK--AY-----------LPNINIIQGSLFD-PFKDNF-  105 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH--hh-----------CCCCcEEEeeccC-CCCCCC-
Confidence            45778899999999999999888755455999999998555543  11           2367889999988 766554 


Q ss_pred             ceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        133 QASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       133 d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                       +|+|+++.+ +|.+  ++...+++++|++  ++.+++.+.+.|
T Consensus       106 -fD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       106 -FDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             -EEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence             567777766 3542  3677889999997  456666644443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN03075 nicotianamine synthase; Provisional

Probab=99.47  E-value=9.2e-13  Score=116.05  Aligned_cols=115  Identities=10%  Similarity=0.047  Sum_probs=82.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHH-HHHH-HHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVV-LQVA-AATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~-~~la-~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +++..+...++++|+|||||.|.++ +.++ ..++..+++|+|++++++..|+  +.+++   ..+. ..+++|.++|+.
T Consensus       114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar--~~~~~---~~gL-~~rV~F~~~Da~  187 (296)
T PLN03075        114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVAR--RLVSS---DPDL-SKRMFFHTADVM  187 (296)
T ss_pred             HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHhhh---ccCc-cCCcEEEECchh
Confidence            4555555557889999999988553 3333 3456667999999998655554  33321   1233 247999999998


Q ss_pred             CCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+..  ..++|+||+.+.+++  ++..+.+.++.+.|+|||.+++-
T Consensus       188 ~~~~~--l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        188 DVTES--LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             hcccc--cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            85421  235789999866555  67899999999999999999985

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.47  E-value=5.6e-13  Score=112.89  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .++.++++ ++++.+|||||||+|..+..+++..+. ..|+|||+++.       .            ...+++++++|+
T Consensus        40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~------------~~~~v~~i~~D~  100 (209)
T PRK11188         40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------D------------PIVGVDFLQGDF  100 (209)
T ss_pred             HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------c------------CCCCcEEEecCC
Confidence            45666666 588999999999999999999887653 36999999981       1            124699999999


Q ss_pred             CCCc--------ccccccceEEEEEeccccC-cC-----------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEE--------HREKITQASIVFVNNFAFG-PT-----------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~--------~~~~~~d~dvv~~~~~~~~-~~-----------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+        +.+  ..+|+|+++...++ .+           ...++.+++++|||||.|++.
T Consensus       101 ~~~~~~~~i~~~~~~--~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        101 RDELVLKALLERVGD--SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CChHHHHHHHHHhCC--CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9864        322  24678888754322 21           145789999999999999985

>PTZ00146 fibrillarin; Provisional

Probab=99.46  E-value=6.5e-13  Score=116.63  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=76.6

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      +.++++++++|||||||+|..+.++|...+. ..|+++|+|+.+.  ..+.+.+.+        ..|+.++.+|+.+.. 
T Consensus       126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~--~dLl~~ak~--------r~NI~~I~~Da~~p~~  195 (293)
T PTZ00146        126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG--RDLTNMAKK--------RPNIVPIIEDARYPQK  195 (293)
T ss_pred             ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH--HHHHHHhhh--------cCCCEEEECCccChhh
Confidence            5567899999999999999999999998753 3699999997532  122222221        248999999987521 


Q ss_pred             ccccccceEEEEEeccccCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTV-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +......+|+|+++..  .++. ...+.++.+.|||||.|++.
T Consensus       196 y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        196 YRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             hhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence            1111124688988764  2443 34456889999999999985

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.45  E-value=7.4e-13  Score=109.35  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...+...++.+|||+|||+|.++..++...+  +|+|+|+|+.+...++  ++++    ..+   .+++++++|+.+.
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~--~~~~----~~~---~~~~~~~~d~~~~   78 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELR--ENAK----LNN---VGLDVVMTDLFKG   78 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHH--HHHH----HcC---CceEEEEcccccc
Confidence            344555566778999999999999998887543  5999999998555543  3332    122   3689999998775


Q ss_pred             cccccccceEEEEEecccc-CcC---------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAF-GPT---------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~-~~~---------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  ..  .+|+|+++..++ .++                     ....+.++.++|||||++++.
T Consensus        79 ~--~~--~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~  139 (179)
T TIGR00537        79 V--RG--KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI  139 (179)
T ss_pred             c--CC--cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence            4  22  457788876543 221                     244578888999999999876

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.45  E-value=9.6e-13  Score=107.90  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..-+++.+...++.+|||+|||+|.+++.+++..+..+|+++|+|+.++..++  ++++    ..+.  .+++++++|..
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~--~n~~----~n~~--~~v~~~~~d~~   91 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK--RNAE----RNGL--ENVEVVQSDLF   91 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH--HHHH----HTTC--TTEEEEESSTT
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HHHH----hcCc--ccccccccccc
Confidence            34455555555788999999999999999998877757999999998665554  3333    2332  23999999997


Q ss_pred             CCcccccccceEEEEEeccccCcC------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFGPT------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~~~------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +... +  ..+|+|++|..++...      ..+.+.+..+.|||||.+++.
T Consensus        92 ~~~~-~--~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen   92 EALP-D--GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             TTCC-T--TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccc-c--cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            6332 2  3578999997765443      344567778999999999653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.45  E-value=4.9e-13  Score=117.18  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             HHHcCCCCCCEEEEEcCCCCH----HHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHH----HHH--------HHHH
Q psy17227         48 IDQINATPDDVFVDLGSGVGQ----VVLQVAAATG-----CKICWGVEKADLPAKYAEMHT----VFK--------RWMQ  106 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~----~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~----~~~--------~~~~  106 (268)
                      ++.....++.+|+|+|||+|.    +++.++...+     ..+|+|+|+|+.|+..|+...    .++        ++..
T Consensus        92 ~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~  171 (264)
T smart00138       92 IASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFS  171 (264)
T ss_pred             HHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEE
Confidence            333334566799999999996    5555555433     236999999998666665210    000        0000


Q ss_pred             Hhcc-------ccccEEEEEcCCCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        107 WYGK-------RHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       107 ~~~~-------~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+.       -..+|+|.++|+.+.+++++  .+|+|++.++ +|.+  +...+++++++.|||||.+++.
T Consensus       172 ~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~--~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      172 RVEDKYRVKPELKERVRFAKHNLLAESPPLG--DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             eCCCeEEEChHHhCcCEEeeccCCCCCCccC--CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            0000       01379999999999876444  4567777555 4443  4567899999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.45  E-value=4.5e-13  Score=126.80  Aligned_cols=113  Identities=15%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.++..++  +.       .+ ...+++++++|+.+
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~-~v~giD~s~~~l~~a~--~~-------~~-~~~~i~~~~~d~~~   94 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AG-QVIALDFIESVIKKNE--SI-------NG-HYKNVKFMCADVTS   94 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CC-EEEEEeCCHHHHHHHH--HH-------hc-cCCceEEEEecccc
Confidence            45677777778889999999999999999876 33 4999999997544322  11       11 13589999999974


Q ss_pred             --CcccccccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        125 --EEHREKITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       125 --l~~~~~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                        +|++++  .+|+|+++.. +|.++  ....++++.++|||||++++.+..
T Consensus        95 ~~~~~~~~--~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336         95 PDLNISDG--SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             cccCCCCC--CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence              455544  4677877655 44444  577899999999999999987543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.44  E-value=1.6e-12  Score=118.82  Aligned_cols=117  Identities=11%  Similarity=0.050  Sum_probs=85.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD  121 (268)
                      ..+-+++.++...+.+|||||||+|.+++.+++..+..+|+++|+|+.++..++  ++++.    .+.. ..+++++.+|
T Consensus       216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~--~N~~~----n~~~~~~~v~~~~~D  289 (378)
T PRK15001        216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR--LNVET----NMPEALDRCEFMINN  289 (378)
T ss_pred             HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cCcccCceEEEEEcc
Confidence            445688888776667999999999999999998887767999999987555554  44332    1211 1378999999


Q ss_pred             CCCCcccccccceEEEEEeccccCc------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGP------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.. +.  ..+|+|++|..+|..      ...+.+..+++.|||||.+++.
T Consensus       290 ~l~~~-~~--~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        290 ALSGV-EP--FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             ccccC-CC--CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            86521 11  257899998776542      1345678888999999999875

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.43  E-value=1.4e-12  Score=118.83  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+....+..+||||||+|.++..+|+..+...++|||+++.++..+  .+++.    ..+.  .|+.++++|+..
T Consensus       112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a--~~ka~----~~gL--~NV~~i~~DA~~  183 (390)
T PRK14121        112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQV--LKQIE----LLNL--KNLLIINYDARL  183 (390)
T ss_pred             HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHH--HHHHH----HcCC--CcEEEEECCHHH
Confidence            456777766777899999999999999999998766699999998744333  23332    2333  589999999976


Q ss_pred             C--cccccccceEEEEEeccccCcCH-------HHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E--EHREKITQASIVFVNNFAFGPTV-------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l--~~~~~~~d~dvv~~~~~~~~~~~-------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  +++++  .+|.|+++-...|+..       ...+.++.|+|||||.+.+.
T Consensus       184 ll~~~~~~--s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        184 LLELLPSN--SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             hhhhCCCC--ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            4  24443  4677877633333321       45689999999999998864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.43  E-value=9.7e-13  Score=111.67  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh---c-cccccEEE
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY---G-KRHGEFRL  117 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~---~-~~~~~i~~  117 (268)
                      ..+..++..+.+.++.+|||+|||.|.-++.+|. .|.. |+|||+|+.++..+.............   . ....++++
T Consensus        21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   98 (213)
T TIGR03840        21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI   98 (213)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence            4555666665556778999999999999999987 5887 999999997544321100000000000   0 01247999


Q ss_pred             EEcCCCCCcccccccceEEEEEecc-ccC-cC-HHHHHHHHHhcCCCCcEEEE
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNF-AFG-PT-VDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~-~~~-~~-~~~~l~e~~r~LkpGG~~i~  167 (268)
                      +++|+.+++... ...+|.|+-..+ +|. ++ ....+..+.+.|||||++++
T Consensus        99 ~~~D~~~~~~~~-~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840        99 FCGDFFALTAAD-LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             EEccCCCCCccc-CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            999999877421 123455554332 333 33 45568999999999998554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.42  E-value=2.9e-12  Score=115.84  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ..+.....++..++++++++|||+|||+|.+++.++. .+.. ++|+|+++.|+..++  .+++    ..|.  .+++++
T Consensus       166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~-v~g~Di~~~~~~~a~--~nl~----~~g~--~~i~~~  235 (329)
T TIGR01177       166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAK-VIGCDIDWKMVAGAR--INLE----HYGI--EDFFVK  235 (329)
T ss_pred             CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCe-EEEEcCCHHHHHHHH--HHHH----HhCC--CCCeEE
Confidence            3344455677777899999999999999999988655 5665 999999998555543  3443    2343  248999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccC-----c----C-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFG-----P----T-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~----~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.++|+.++  .+|+|+++..+..     .    + ....+.++.++|||||++++.
T Consensus       236 ~~D~~~l~~~~~--~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       236 RGDATKLPLSSE--SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             ecchhcCCcccC--CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            999999987654  3567887643211     1    1 356788899999999999875

This family is found exclusively in the Archaea.

>PRK14967 putative methyltransferase; Provisional

Probab=99.42  E-value=2.6e-12  Score=109.86  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=80.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++..+++.++++|||+|||+|.+++.+++. +..+++|+|+|+.++..++  ++++.    .+   .+++++++|+
T Consensus        24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~--~n~~~----~~---~~~~~~~~d~   93 (223)
T PRK14967         24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSAR--LNALL----AG---VDVDVRRGDW   93 (223)
T ss_pred             HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHH--HHHHH----hC---CeeEEEECch
Confidence            3456667778889999999999999999988774 5546999999997555543  33331    22   2688999999


Q ss_pred             CCCcccccccceEEEEEeccccCc-C---------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGP-T---------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~-~---------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+. +++.  .+|+|+++..++.. .                     ....+.++++.|||||++++.
T Consensus        94 ~~~-~~~~--~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967         94 ARA-VEFR--PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             hhh-ccCC--CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            763 2232  46788887543211 1                     344567888999999999974

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.41  E-value=2.5e-12  Score=106.82  Aligned_cols=109  Identities=14%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.++.-++.++||||||.|+.++.+|++ |.. |+++|+|+.  .++++++.++    ..+   -+|+..+.|+.+.
T Consensus        21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~-VtAvD~s~~--al~~l~~~a~----~~~---l~i~~~~~Dl~~~   89 (192)
T PF03848_consen   21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFD-VTAVDISPV--ALEKLQRLAE----EEG---LDIRTRVADLNDF   89 (192)
T ss_dssp             HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-E-EEEEESSHH--HHHHHHHHHH----HTT----TEEEEE-BGCCB
T ss_pred             HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCe-EEEEECCHH--HHHHHHHHHh----hcC---ceeEEEEecchhc
Confidence            4555566666779999999999999999884 887 999999986  3433333332    222   3699999999887


Q ss_pred             cccccccceEEEEEecc---ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNF---AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++.   ++|+|++..+   ++.+.....+..+-..++|||.+++.
T Consensus        90 ~~~~---~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   90 DFPE---EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             S-TT---TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccC---CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            7643   4566665322   33344566788888999999998763

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG4300|consensus

Probab=99.40  E-value=1.3e-12  Score=107.63  Aligned_cols=105  Identities=12%  Similarity=0.019  Sum_probs=77.2

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE-EEEcCCCCCc-ccccccce
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR-LVKGDFLTEE-HREKITQA  134 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~-~~~gD~~~l~-~~~~~~d~  134 (268)
                      ..||+||||||..--..--. +..+||++|.++.|..++.  +.+.    +.  ++.++. |+.++.+++| +++.+.  
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~--ks~~----E~--k~~~~~~fvva~ge~l~~l~d~s~--  146 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIAD--KSAA----EK--KPLQVERFVVADGENLPQLADGSY--  146 (252)
T ss_pred             cceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHH--HHHh----hc--cCcceEEEEeechhcCcccccCCe--
Confidence            34899999999986543322 3345999999998766654  2222    11  355777 9999999999 666554  


Q ss_pred             EEEEE-eccccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        135 SIVFV-NNFAFGPTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       135 dvv~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      |+|++ ...|-..++.+.|+++.|+|+|||++++.++..
T Consensus       147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            44544 344667899999999999999999999986654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.40  E-value=7.6e-12  Score=106.07  Aligned_cols=112  Identities=19%  Similarity=0.228  Sum_probs=79.2

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+.....++..+.+.++.+|||||||+|..+..+++..+  +++|+|+++.++..+  ++++.    ..+  ..++++++
T Consensus        63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a--~~~~~----~~~--~~~v~~~~  132 (212)
T PRK00312         63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEA--KRRLK----QLG--LHNVSVRH  132 (212)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHH--HHHHH----HCC--CCceEEEE
Confidence            445567788889999999999999999999987777643  499999998744443  34333    233  24699999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+......  .+|+|+++....     .....+++.|||||++++.
T Consensus       133 ~d~~~~~~~~~--~fD~I~~~~~~~-----~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        133 GDGWKGWPAYA--PFDRILVTAAAP-----EIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCcccCCCcCC--CcCEEEEccCch-----hhhHHHHHhcCCCcEEEEE
Confidence            99866322222  356777764322     2245678999999999985

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.40  E-value=3.6e-12  Score=108.58  Aligned_cols=111  Identities=17%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ...+++.+.  ..++.+|||||||+|.++..++.. +. +++|+|+|+.++..++  +++.    ..+. ..+++|.++|
T Consensus        42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~v~gvD~s~~~i~~a~--~~~~----~~~~-~~~i~~~~~d  112 (219)
T TIGR02021        42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GA-IVKAVDISEQMVQMAR--NRAQ----GRDV-AGNVEFEVND  112 (219)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CC-EEEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEECC
Confidence            344666665  567899999999999999998874 44 4999999998655554  3322    1121 2479999999


Q ss_pred             CCCCcccccccceEEEEEe-ccccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVN-NFAFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~-~~~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+++   +.+  |+|++. .++|.+  +....+.++.+++++|+.+.+.
T Consensus       113 ~~~~~---~~f--D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       113 LLSLC---GEF--DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             hhhCC---CCc--CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            98876   334  555554 444543  3667789999999877665553

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=7.8e-13  Score=101.14  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKITQ  133 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~d  133 (268)
                      |.+|||+|||+|.+++.+++.. ..+++|+|+++..+.+++  .++.    ..+. ..+++++++|+.+..  +.+  ..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~--~~~~----~~~~-~~~~~~~~~D~~~~~~~~~~--~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELAR--RNLP----RNGL-DDRVEVIVGDARDLPEPLPD--GK   70 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHH--HHCH----HCTT-TTTEEEEESHHHHHHHTCTT--T-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHH--HHHH----HccC-CceEEEEECchhhchhhccC--ce
Confidence            5689999999999999888765 456999999997655554  3332    2222 357999999998876  333  45


Q ss_pred             eEEEEEeccccCc---------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGP---------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~---------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++|..++..         .....++++.+.|||||.+++.
T Consensus        71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            7889988765431         1245578888999999999874

...

>KOG1271|consensus

Probab=99.39  E-value=3.1e-12  Score=103.46  Aligned_cols=147  Identities=19%  Similarity=0.230  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhcCCccccccCCCCCCC---CcccCcH-HHHHHHHHHcC---CCC-CCEEEEEcCCCCHHHHHHHHHhC
Q psy17227          7 LRHIIQQTYNQSVTEPEKLNVYQPFSPF---VYGETSF-DLISRMIDQIN---ATP-DDVFVDLGSGVGQVVLQVAAATG   78 (268)
Q Consensus         7 ~~~~~~~~y~~~~~~~~~~~~y~~~~~~---~~g~~~~-~~~~~ll~~l~---~~~-~~~vLDiGCG~G~~~~~la~~~~   78 (268)
                      ++.--++.|.+      .++.|..+...   ++|+... +.+..+.....   +.+ .++|||+|||+|.+++.+++.--
T Consensus        17 tK~yWD~~Y~~------El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf   90 (227)
T KOG1271|consen   17 TKSYWDAAYEL------ELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF   90 (227)
T ss_pred             hHHHHHHHHHH------HHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC
Confidence            45556777877      55556433221   4554332 23344444433   333 34899999999999999998632


Q ss_pred             CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE----ecc-ccCcCHH----
Q psy17227         79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV----NNF-AFGPTVD----  149 (268)
Q Consensus        79 ~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~----~~~-~~~~~~~----  149 (268)
                      ....+|+|.|+.++.+|+  ..+++    .+. ...|+|.+.|+.+..+..  .++|+|.=    .++ +++..+.    
T Consensus        91 ~~~L~GvDYs~~AV~LA~--niAe~----~~~-~n~I~f~q~DI~~~~~~~--~qfdlvlDKGT~DAisLs~d~~~~r~~  161 (227)
T KOG1271|consen   91 QSKLTGVDYSEKAVELAQ--NIAER----DGF-SNEIRFQQLDITDPDFLS--GQFDLVLDKGTLDAISLSPDGPVGRLV  161 (227)
T ss_pred             CCCccccccCHHHHHHHH--HHHHh----cCC-CcceeEEEeeccCCcccc--cceeEEeecCceeeeecCCCCccccee
Confidence            223899999999888865  22221    232 235999999999865433  34566652    222 2222222    


Q ss_pred             HHHHHHHhcCCCCcEEEEe
Q psy17227        150 HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       150 ~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+..+-+.|+|||+|+++
T Consensus       162 ~Y~d~v~~ll~~~gifvIt  180 (227)
T KOG1271|consen  162 VYLDSVEKLLSPGGIFVIT  180 (227)
T ss_pred             eehhhHhhccCCCcEEEEE
Confidence            2345666899999999987

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.37  E-value=6.8e-12  Score=113.71  Aligned_cols=112  Identities=9%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+......+|||+|||+|.+++.+++..+..+|+|+|+|+.++..++  +++++    .+.   ..+++.+|+.
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~--~nl~~----n~l---~~~~~~~D~~  255 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR--ATLAA----NGL---EGEVFASNVF  255 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cCC---CCEEEEcccc
Confidence            34567777655566899999999999999998877656999999987555543  33332    222   4577888876


Q ss_pred             CCcccccccceEEEEEeccccC------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFG------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..  .  ..+|+|++|..+|.      ......+.++.+.|||||.+++.
T Consensus       256 ~~~--~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        256 SDI--K--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             ccc--C--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence            521  2  24688988877664      12456688999999999999764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.37  E-value=3.1e-12  Score=109.74  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=83.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +..+.......+|||||||+|.+++.+|++....+++|||+++.+...|+  ++.+    ..+. ..+++++++|+.++.
T Consensus        36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~--~nv~----ln~l-~~ri~v~~~Di~~~~  108 (248)
T COG4123          36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ--RNVA----LNPL-EERIQVIEADIKEFL  108 (248)
T ss_pred             HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH--HHHH----hCcc-hhceeEehhhHHHhh
Confidence            44555666688999999999999999999866566999999998666654  3322    2222 368999999999876


Q ss_pred             ccccccceEEEEEeccccCcC-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPT-------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~-------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..-...++|+|+||..++...                   +...++...+.|||||.+.+.
T Consensus       109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V  169 (248)
T COG4123         109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV  169 (248)
T ss_pred             hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence            433333578999998765422                   333455556799999999875

>PRK14968 putative methyltransferase; Provisional

Probab=99.36  E-value=1.1e-11  Score=102.54  Aligned_cols=113  Identities=21%  Similarity=0.300  Sum_probs=77.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+...++.+|||+|||+|.++..++.. +.. ++|+|+|+.+...++  ++++    ..+....++.++++|+.+
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~-v~~~D~s~~~~~~a~--~~~~----~~~~~~~~~~~~~~d~~~   84 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKK-VVGVDINPYAVECAK--CNAK----LNNIRNNGVEVIRSDLFE   84 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cce-EEEEECCHHHHHHHH--HHHH----HcCCCCcceEEEeccccc
Confidence            33455555578889999999999999999887 555 999999997555543  3332    223322238999999876


Q ss_pred             CcccccccceEEEEEeccccCc----------------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGP----------------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~----------------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . +.+.  .+|+|+++..++..                      .....++++.++|||||.+++.
T Consensus        85 ~-~~~~--~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         85 P-FRGD--KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             c-cccc--CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            3 2232  46778776543321                      1344578889999999998865

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.36  E-value=5.8e-12  Score=109.57  Aligned_cols=96  Identities=22%  Similarity=0.307  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||+|||+|.+++.+++ .|..+|+|+|+|+.++..++  ++++.    .+. ..++.+..+|.          
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~--~n~~~----~~~-~~~~~~~~~~~----------  178 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAAR--ENAEL----NGV-ELNVYLPQGDL----------  178 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHH--HHHHH----cCC-CceEEEccCCC----------
Confidence            46889999999999999987655 56666999999997555543  33331    222 12344444432          


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++|..  .......+.++.++|||||.++++
T Consensus       179 ~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        179 KADVIVANIL--ANPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             CcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3567877633  223456678999999999999986

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.36  E-value=1e-11  Score=110.26  Aligned_cols=107  Identities=14%  Similarity=0.203  Sum_probs=73.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +++.+ ..++++|||+|||+|.+++.+++ .|..+|+|+|+|+.++..++  +++.    ..+. ..++.+..+|.... 
T Consensus       152 ~l~~~-~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~--~n~~----~n~~-~~~~~~~~~~~~~~-  221 (288)
T TIGR00406       152 WLEDL-DLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESAR--KNAE----LNQV-SDRLQVKLIYLEQP-  221 (288)
T ss_pred             HHHhh-cCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHH--HHHH----HcCC-CcceEEEecccccc-
Confidence            33443 45789999999999999987765 56667999999997555543  3333    2232 23577777764322 


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+.  .+|+|++|..  .......+.++.+.|||||.++++
T Consensus       222 -~~~--~fDlVvan~~--~~~l~~ll~~~~~~LkpgG~li~s  258 (288)
T TIGR00406       222 -IEG--KADVIVANIL--AEVIKELYPQFSRLVKPGGWLILS  258 (288)
T ss_pred             -cCC--CceEEEEecC--HHHHHHHHHHHHHHcCCCcEEEEE
Confidence             222  4678888743  233556788999999999999986

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=1.2e-11  Score=110.98  Aligned_cols=113  Identities=18%  Similarity=0.240  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +.....+++.++++++++|||||||+|.++..+++..+. ..|+|+|+++.++..|+  ++++    ..|.  .++.+++
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar--~~l~----~~g~--~nV~~i~  137 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK--RNVR----RLGI--ENVIFVC  137 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEe
Confidence            445567888889999999999999999999999987654 35999999997555443  3333    2332  4799999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+.+....  .+|+|++....     ......+++.|||||++++.
T Consensus       138 gD~~~~~~~~~--~fD~Ii~~~g~-----~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        138 GDGYYGVPEFA--PYDVIFVTVGV-----DEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CChhhcccccC--CccEEEECCch-----HHhHHHHHHhcCCCCEEEEE
Confidence            99877553332  35677764321     22234567899999998874

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.35  E-value=1e-11  Score=105.83  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc----cccccEEE
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG----KRHGEFRL  117 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~----~~~~~i~~  117 (268)
                      ..+...+..+.+.++.+|||+|||.|..+..+|. .|+. |+|||+|+.++..+.............+    ....+|++
T Consensus        24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~  101 (218)
T PRK13255         24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE-QGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI  101 (218)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence            4455566656667788999999999999999987 5887 9999999974443210000000000000    01247999


Q ss_pred             EEcCCCCCcccccccceEEEEEecc-ccC-cC-HHHHHHHHHhcCCCCcEEE
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNF-AFG-PT-VDHALKERFQDLKDGARIV  166 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~-~~~-~~-~~~~l~e~~r~LkpGG~~i  166 (268)
                      .++|+.+++... ...+|.|+-..+ ++. ++ ....+..+.+.|||||+++
T Consensus       102 ~~~D~~~l~~~~-~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        102 YCGDFFALTAAD-LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             EECcccCCCccc-CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence            999999986322 224566664433 332 33 4566889999999998644

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.34  E-value=2e-11  Score=105.62  Aligned_cols=116  Identities=14%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..+++.+. ..+.+|||+|||+|.++..++...+...++|+|+|+.++..++  +++.    ..+.  .+++++++
T Consensus        74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~--~~~~----~~~~--~~~~~~~~  144 (251)
T TIGR03534        74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR--KNAA----RLGL--DNVTFLQS  144 (251)
T ss_pred             HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CeEEEEEC
Confidence            344555666654 3456899999999999999998776667999999998555544  3332    2232  37999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCc--------C-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGP--------T-------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~--------~-------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.+ ++++  ..+|+|++|..++..        +                   ....+.++.+.|||||++++.
T Consensus       145 d~~~-~~~~--~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       145 DWFE-PLPG--GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             chhc-cCcC--CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            9976 3333  346788886543321        1                   124467888999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.34  E-value=4.7e-12  Score=107.01  Aligned_cols=115  Identities=20%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +.+..+.++++.+.++||++|||||||+|..+..+|...+.. .|++||+.+.....  ++++++    ..+  ..++++
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~--A~~~l~----~~~--~~nv~~  127 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER--ARRNLA----RLG--IDNVEV  127 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH--HHHHHH----HHT--THSEEE
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH--HHHHHH----Hhc--cCceeE
Confidence            335677899999999999999999999999999999887754 59999999964333  334443    233  348999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|...... +. ..+|.|+++....     ..-..+++.||+||++|+-
T Consensus       128 ~~gdg~~g~~-~~-apfD~I~v~~a~~-----~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  128 VVGDGSEGWP-EE-APFDRIIVTAAVP-----EIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             EES-GGGTTG-GG--SEEEEEESSBBS-----S--HHHHHTEEEEEEEEEE
T ss_pred             EEcchhhccc-cC-CCcCEEEEeeccc-----hHHHHHHHhcCCCcEEEEE
Confidence            9999875321 21 2467888865432     2234577889999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.34  E-value=1.3e-11  Score=102.82  Aligned_cols=102  Identities=20%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ++.+++ .+.++++|||+|||+|.++..+++.. +..+++|+|+|+.+          .         ..+++++++|+.
T Consensus        22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~---------~~~i~~~~~d~~   82 (188)
T TIGR00438        22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P---------IENVDFIRGDFT   82 (188)
T ss_pred             HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c---------CCCceEEEeeCC
Confidence            344444 56889999999999999999888876 34469999999841          0         136889999998


Q ss_pred             CCc--------ccccccceEEEEEeccc-----cCcC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE--------HREKITQASIVFVNNFA-----FGPT-------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~--------~~~~~~d~dvv~~~~~~-----~~~~-------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+        ++.  ..+|+|+++...     +..+       ....+.+++++|||||++++.
T Consensus        83 ~~~~~~~l~~~~~~--~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        83 DEEVLNKIRERVGD--DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             ChhHHHHHHHHhCC--CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            754        122  246788875421     1111       256789999999999999984

>PRK06202 hypothetical protein; Provisional

Probab=99.34  E-value=9.9e-12  Score=106.80  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHh---CC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAAT---GC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~---~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      ...++.+|||||||+|.++..+++..   |. .+++|+|+|+.|+..++  ++.         ...++++.+++..++++
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~--~~~---------~~~~~~~~~~~~~~l~~  125 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFAR--ANP---------RRPGVTFRQAVSDELVA  125 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH--hcc---------ccCCCeEEEEecccccc
Confidence            34577899999999999998887642   32 25999999998655543  211         12357788888777776


Q ss_pred             cccccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.  .+|+|+++.. +|.++  ....+++++|+++  |.+++.
T Consensus       126 ~~~--~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        126 EGE--RFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             cCC--CccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence            444  4566777655 45555  4578999999998  455554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.34  E-value=1.5e-12  Score=107.09  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~~  130 (268)
                      ++||.+|||||||.|.+..++....++. .+|||++++  .+.++        -.     ..+.++++|+.+ ++ |+++
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~-g~GvEid~~--~v~~c--------v~-----rGv~Viq~Dld~gL~~f~d~   74 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVD-GYGVEIDPD--NVAAC--------VA-----RGVSVIQGDLDEGLADFPDQ   74 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCe-EEEEecCHH--HHHHH--------HH-----cCCCEEECCHHHhHhhCCCC
Confidence            6889999999999999999887766665 899999985  33221        11     257799999986 44 7788


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +||+ ||.+....+..++...+.|+.|+   |...|++
T Consensus        75 sFD~-VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVs  108 (193)
T PF07021_consen   75 SFDY-VILSQTLQAVRRPDEVLEEMLRV---GRRAIVS  108 (193)
T ss_pred             CccE-EehHhHHHhHhHHHHHHHHHHHh---cCeEEEE
Confidence            7776 66655667788899999999988   4455553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.33  E-value=1.8e-11  Score=107.19  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++...+..-.|.+|||||||+|..+..++.. |.+.|+|||.++.  -+.+ -+.+++   -.|. ...+.++..-++
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l--f~~Q-F~~i~~---~lg~-~~~~~~lplgvE  175 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL--FYLQ-FEAIKH---FLGQ-DPPVFELPLGVE  175 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH--HHHH-HHHHHH---HhCC-CccEEEcCcchh
Confidence            456777776668899999999999999998775 7777999999974  2222 111222   1121 224455545677


Q ss_pred             CCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|. .+.  +|+||+..+ +|-.++...|.++...|+|||.+|+-
T Consensus       176 ~Lp~-~~~--FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  176 DLPN-LGA--FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             hccc-cCC--cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence            8875 343  566766555 79999999999999999999999973

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.33  E-value=2.9e-11  Score=107.09  Aligned_cols=116  Identities=19%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             HHHHHHH-HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMID-QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~-~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+...+. .+...++.+|||+|||+|.+++.++...+..+|+|+|+|+.++.+|+  ++++    ..+. ..+++++++|
T Consensus       108 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~--~n~~----~~~~-~~~i~~~~~D  180 (284)
T TIGR03533       108 LIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE--INIE----RHGL-EDRVTLIQSD  180 (284)
T ss_pred             HHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEECc
Confidence            3334333 33334567899999999999999998776556999999998666654  3333    2333 2479999999


Q ss_pred             CCCCcccccccceEEEEEeccccC--------------cC------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG--------------PT------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~--------------~~------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+. +++.  .+|+|++|..+..              |.            ....+.++.+.|||||++++.
T Consensus       181 ~~~~-~~~~--~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       181 LFAA-LPGR--KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             hhhc-cCCC--CccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            8652 2222  4678888743211              10            133467777899999999974

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.33  E-value=6.3e-12  Score=105.14  Aligned_cols=99  Identities=16%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+.+.+  .++.+|||||||+|.++..++...+.. ++|||+|+.++..++               ..+++++++|+.
T Consensus         4 ~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~-~~giD~s~~~i~~a~---------------~~~~~~~~~d~~   65 (194)
T TIGR02081         4 LESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVR-GYGIEIDQDGVLACV---------------ARGVNVIQGDLD   65 (194)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCc-EEEEeCCHHHHHHHH---------------HcCCeEEEEEhh
Confidence            34455553  477899999999999998887765555 899999986333321               125789999997


Q ss_pred             C-Cc-ccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCC
Q psy17227        124 T-EE-HREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDG  162 (268)
Q Consensus       124 ~-l~-~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpG  162 (268)
                      + ++ ++++.  +|+|+++.. .|.+++...++++.|+++++
T Consensus        66 ~~l~~~~~~s--fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        66 EGLEAFPDKS--FDYVILSQTLQATRNPEEILDEMLRVGRHA  105 (194)
T ss_pred             hcccccCCCC--cCEEEEhhHhHcCcCHHHHHHHHHHhCCeE
Confidence            6 43 54444  456666554 67788999999999987753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=3.2e-11  Score=112.74  Aligned_cols=114  Identities=10%  Similarity=0.121  Sum_probs=80.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...++..+++.+|++|||+|||+|..+..++...+...|+|+|+|+.++..  +++++++    .|.   +++++++|+.
T Consensus       233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~--~~~n~~~----~g~---~~~~~~~D~~  303 (427)
T PRK10901        233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER--VRENLQR----LGL---KATVIVGDAR  303 (427)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH--HHHHHHH----cCC---CeEEEEcCcc
Confidence            345666788899999999999999999999987654569999999974444  4444442    332   4789999998


Q ss_pred             CCcc--cccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEH--REKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~--~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++.  ...  .+|.|+++..|..       |+                ....+..+++.|||||+++.+
T Consensus       304 ~~~~~~~~~--~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys  371 (427)
T PRK10901        304 DPAQWWDGQ--PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA  371 (427)
T ss_pred             cchhhcccC--CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            7642  222  3577886654321       11                124577888999999999855

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.32  E-value=2.8e-11  Score=113.06  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+...++..+++.+|.+|||+|||+|+.+..++...+..+++|+|+++.++..  +++++++    .|.. ..+.+.++|
T Consensus       225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~--~~~n~~r----~g~~-~~v~~~~~d  297 (426)
T TIGR00563       225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR--VYENLKR----LGLT-IKAETKDGD  297 (426)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH--HHHHHHH----cCCC-eEEEEeccc
Confidence            34455667788999999999999999999999987764569999999974333  4454442    3433 245668888


Q ss_pred             CCCCcccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++++......+|.|+++..|.       .|+                ....+.++++.|||||+++.+
T Consensus       298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys  367 (426)
T TIGR00563       298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA  367 (426)
T ss_pred             cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            87655311112456787654321       232                245678888999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.31  E-value=2.6e-11  Score=99.26  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=78.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +.++++.+++.++++|||||||+|.++..++.. +. +++|+|+++.+...++  +++.        ...+++++++|+.
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~-~v~~vE~~~~~~~~~~--~~~~--------~~~~v~ii~~D~~   69 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AA-RVTAIEIDPRLAPRLR--EKFA--------AADNLTVIHGDAL   69 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CC-eEEEEECCHHHHHHHH--HHhc--------cCCCEEEEECchh
Confidence            357888899999999999999999999999886 44 4999999997444432  2221        1358999999999


Q ss_pred             CCcccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~  168 (268)
                      ++++++.  .+|.|++|..++..  ...+..+.+  .+.++|.+++-
T Consensus        70 ~~~~~~~--~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       70 KFDLPKL--QPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             cCCcccc--CCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEE
Confidence            9886553  35678887665542  344444443  24578888774

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=4.4e-11  Score=99.85  Aligned_cols=109  Identities=21%  Similarity=0.298  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +..+.++++.+.++++++||+||||+|..+.-+|+..+  +|+.||..+.....  ++++++    ..|  ..|+.+++|
T Consensus        58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~--A~~~L~----~lg--~~nV~v~~g  127 (209)
T COG2518          58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQ--ARRNLE----TLG--YENVTVRHG  127 (209)
T ss_pred             cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHH--HHHHHH----HcC--CCceEEEEC
Confidence            34678899999999999999999999999999998766  49999999863333  334444    233  557999999


Q ss_pred             CCCC-CcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLT-EEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~-l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |... +|- ..  .+|.|++.+.. ..|      ..+.+.|||||++++-
T Consensus       128 DG~~G~~~-~a--PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         128 DGSKGWPE-EA--PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP  168 (209)
T ss_pred             CcccCCCC-CC--CcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence            9987 332 12  34667665441 222      3567889999999983

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.30  E-value=2.6e-11  Score=104.12  Aligned_cols=113  Identities=13%  Similarity=0.111  Sum_probs=81.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+...+...++.+|||||||+|.++..+++. ++. ++|+|+++.++..++  +++..    .+   .+++++.+|+
T Consensus        36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~iD~s~~~~~~a~--~~~~~----~~---~~~~~~~~~~  104 (233)
T PRK05134         36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GAD-VTGIDASEENIEVAR--LHALE----SG---LKIDYRQTTA  104 (233)
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCe-EEEEcCCHHHHHHHH--HHHHH----cC---CceEEEecCH
Confidence            3444555555668899999999999999888764 655 999999987444333  32221    11   2678888998


Q ss_pred             CCCcc-cccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEH-REKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~-~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++. ...  .+|+|++... .+.+++...++.+.+.|+|||++++.
T Consensus       105 ~~~~~~~~~--~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134        105 EELAAEHPG--QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             HHhhhhcCC--CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            87652 222  4566766544 57788899999999999999999986

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.30  E-value=4.1e-11  Score=104.31  Aligned_cols=114  Identities=15%  Similarity=0.083  Sum_probs=74.6

Q ss_pred             HHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +..++..+.. .++.+|||+|||+|.+++.+++..+..+|+|+|+|+.++..++  ++++.        . +++++++|+
T Consensus        74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~--~N~~~--------~-~~~~~~~D~  142 (251)
T TIGR03704        74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR--RNLAD--------A-GGTVHEGDL  142 (251)
T ss_pred             HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH--------c-CCEEEEeec
Confidence            3444444432 2345899999999999999988776556999999998666554  44432        1 257899998


Q ss_pred             CCCcccccccceEEEEEeccccCc-----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGP-----------------------T----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~-----------------------~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.........+|+|++|..+...                       +    ....+..+.+.|||||++++.
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            763211011247899988654321                       1    123345555899999999974

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.29  E-value=1.2e-11  Score=109.46  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ++++.+ ..+|++|||||||+|-+++.++ +.|+.+|+|+|++|.++..++  ++++    .++.. .++.+.  ...+.
T Consensus       153 ~~l~~~-~~~g~~vLDvG~GSGILaiaA~-klGA~~v~a~DiDp~Av~~a~--~N~~----~N~~~-~~~~v~--~~~~~  221 (295)
T PF06325_consen  153 ELLEKY-VKPGKRVLDVGCGSGILAIAAA-KLGAKKVVAIDIDPLAVEAAR--ENAE----LNGVE-DRIEVS--LSEDL  221 (295)
T ss_dssp             HHHHHH-SSTTSEEEEES-TTSHHHHHHH-HTTBSEEEEEESSCHHHHHHH--HHHH----HTT-T-TCEEES--CTSCT
T ss_pred             HHHHHh-ccCCCEEEEeCCcHHHHHHHHH-HcCCCeEEEecCCHHHHHHHH--HHHH----HcCCC-eeEEEE--Eeccc
Confidence            344444 5688999999999999998654 579988999999997555554  4433    23443 355442  22222


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  .  ..+|+|++|-.  ..-+...+..+.+.|||||.++++
T Consensus       222 ~--~--~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  222 V--E--GKFDLVVANIL--ADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             C--C--S-EEEEEEES---HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             c--c--ccCCEEEECCC--HHHHHHHHHHHHHhhCCCCEEEEc
Confidence            2  1  46789998833  333455556677899999999987

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.6e-11  Score=108.02  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +.++.+ ..+|.+|||+|||+|-+++.+ .+.|+.+++|+|++|.++..++  ++++.    ++.. ..++....+....
T Consensus       154 ~~Le~~-~~~g~~vlDvGcGSGILaIAa-~kLGA~~v~g~DiDp~AV~aa~--eNa~~----N~v~-~~~~~~~~~~~~~  224 (300)
T COG2264         154 EALEKL-LKKGKTVLDVGCGSGILAIAA-AKLGAKKVVGVDIDPQAVEAAR--ENARL----NGVE-LLVQAKGFLLLEV  224 (300)
T ss_pred             HHHHHh-hcCCCEEEEecCChhHHHHHH-HHcCCceEEEecCCHHHHHHHH--HHHHH----cCCc-hhhhcccccchhh
Confidence            344444 348899999999999999864 5589999999999997666654  44442    2221 1122333333222


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  .+ ..+|+|++|-  ...-+......+.+.|||||+++++
T Consensus       225 ~--~~-~~~DvIVANI--LA~vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         225 P--EN-GPFDVIVANI--LAEVLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             c--cc-CcccEEEehh--hHHHHHHHHHHHHHHcCCCceEEEE
Confidence            2  21 2578898873  3333455567788999999999987

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.29  E-value=6.3e-11  Score=104.10  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+..++..+...++.+|||+|||+|.+++.++...+..+++|+|+|+.++..++  +++.     .. ...+++++++|
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~--~n~~-----~~-~~~~i~~~~~d  166 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR--RNAK-----HG-LGARVEFLQGD  166 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH-----hC-CCCcEEEEEcc
Confidence            3444555556667888999999999999999998876667999999998655554  3322     11 13489999999


Q ss_pred             CCCCcccccccceEEEEEeccccCc--------C-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGP--------T-------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~--------~-------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.. ..  ..+|+|++|..+...        +                   ....+.++.+.|||||++++.
T Consensus       167 ~~~~~-~~--~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        167 WFEPL-PG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             ccCcC-CC--CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            96532 12  246788876443211        1                   133456777999999999984

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.28  E-value=7.1e-11  Score=104.62  Aligned_cols=118  Identities=15%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ...+..+++.+. ..+..+|||+|||+|.+++.++...+..+|+|+|+|+.++..++  ++++    ..+. ..+++|++
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~--~n~~----~~~~-~~~v~~~~  171 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE--ENAE----KNQL-EHRVEFIQ  171 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEE
Confidence            334444554442 23336899999999999999998876556999999998666554  3333    2333 23599999


Q ss_pred             cCCCCCcccccccceEEEEEecccc--------------Cc------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAF--------------GP------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~--------------~~------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+ +++..  .+|+|++|..+.              .|            .....+.++.+.|+|||.+++.
T Consensus       172 ~d~~~-~~~~~--~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e  243 (284)
T TIGR00536       172 SNLFE-PLAGQ--KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE  243 (284)
T ss_pred             Cchhc-cCcCC--CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            99876 22222  467788774321              11            1233456677899999999874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.28  E-value=5.4e-11  Score=109.26  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++  +++++    .+   .+++++++|+.+..++.. .
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar--eNa~~----~g---~rV~fi~gDl~e~~l~~~-~  318 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR--KNAAD----LG---ARVEFAHGSWFDTDMPSE-G  318 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cC---CcEEEEEcchhccccccC-C
Confidence            34667999999999999999888766666999999998666554  44432    22   379999999976433211 2


Q ss_pred             ceEEEEEeccccCc----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGP----------------------T----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~----------------------~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++|..+...                      +    ....+..+.+.|+|||.+++.
T Consensus       319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            47889988654221                      1    112234444789999998874

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=5.6e-11  Score=111.63  Aligned_cols=114  Identities=16%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...+++.++.+|||+|||+|..+..++... +..+|+|+|+++.++..  ++++++    ..|.  .+++++++|+.+
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~--~~~n~~----~~g~--~~v~~~~~D~~~  312 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL--IEENAK----RLGL--TNIETKALDARK  312 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH--HHHHHH----HcCC--CeEEEEeCCccc
Confidence            35556788899999999999999999999876 34469999999874433  334443    2343  369999999987


Q ss_pred             CcccccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.... ..+|+|+++..+..       |+                ....+.++++.|||||+++.+
T Consensus       313 ~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        313 VHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             ccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            641111 24677887754321       11                123578888999999999854

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.27  E-value=7.2e-11  Score=105.63  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      ..+|||+|||+|.+++.++...+..+|+|+|+|+.++..|+  ++++    ..+. ..+++++++|+.+. ++..  .+|
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~--~n~~----~~~l-~~~i~~~~~D~~~~-l~~~--~fD  203 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE--INIE----RHGL-EDRVTLIESDLFAA-LPGR--RYD  203 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC-CCcEEEEECchhhh-CCCC--Ccc
Confidence            36899999999999999998876666999999998666654  3333    2332 24699999998652 2222  467


Q ss_pred             EEEEecccc--------------CcC------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        136 IVFVNNFAF--------------GPT------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       136 vv~~~~~~~--------------~~~------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|++|..+.              .|.            ....+.++.+.|||||++++.
T Consensus       204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            888874321              111            134467777899999999984

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.26  E-value=5.9e-11  Score=104.09  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=79.1

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...+++++|++|||+|||+|+.+..+|...+. ..|+++|+++.+  ++.+++++++    .|.  .+++++++|+.+++
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~--l~~~~~n~~~----~g~--~~v~~~~~D~~~~~  135 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSR--TKVLIANINR----CGV--LNVAVTNFDGRVFG  135 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHH----cCC--CcEEEecCCHHHhh
Confidence            34568899999999999999999999887642 369999999973  3334455543    343  47999999998765


Q ss_pred             ccccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....  .+|+|+++..|..       |+                ..+.+.++.+.|||||+++.+
T Consensus       136 ~~~~--~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs  198 (264)
T TIGR00446       136 AAVP--KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS  198 (264)
T ss_pred             hhcc--CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4332  3678887654322       11                123577788999999999854

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.25  E-value=1.8e-11  Score=100.98  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      .|+-..-.++||+|||.|.++..+|.+  |..++++|+|+.++..|+      +++.    ..++|+|+++|+.+.. ++
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar------~Rl~----~~~~V~~~~~dvp~~~-P~  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARAR------ERLA----GLPHVEWIQADVPEFW-PE  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHH------HHTT----T-SSEEEEES-TTT----S
T ss_pred             hcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHH------HhcC----CCCCeEEEECcCCCCC-CC
Confidence            577777789999999999999999876  566999999987433333      2221    2358999999997753 23


Q ss_pred             cccceEEEEE-eccccCc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFV-NNFAFGP---TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~-~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  .+|+|.+ +..++..   ++...+..+...|+|||.+|+.
T Consensus       105 ~--~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g  145 (201)
T PF05401_consen  105 G--RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG  145 (201)
T ss_dssp             S---EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             C--CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3  3455554 4445553   3566789999999999999985

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.2e-10  Score=99.40  Aligned_cols=121  Identities=19%  Similarity=0.177  Sum_probs=96.4

Q ss_pred             ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      ..++++....++..+++.||++|||.|.|+|.++..+|...+. .+|+..|+.++..+.  |++|+++    .+.. .++
T Consensus        76 QiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~--A~~Nl~~----~~l~-d~v  148 (256)
T COG2519          76 QIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKT--ARENLSE----FGLG-DRV  148 (256)
T ss_pred             ceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHH--HHHHHHH----hccc-cce
Confidence            3455566778999999999999999999999999999986654 579999999974444  4466654    3543 359


Q ss_pred             EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ++..+|+.+.-+.+   ++|+++.    -.|++..++..+.+.|||||.++++-|.
T Consensus       149 ~~~~~Dv~~~~~~~---~vDav~L----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         149 TLKLGDVREGIDEE---DVDAVFL----DLPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             EEEecccccccccc---ccCEEEE----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            99999999866544   5677875    4689999999999999999999987443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.24  E-value=1.1e-10  Score=104.57  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             HHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         43 LISRMIDQINA---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        43 ~~~~ll~~l~~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+..+++.+..   .++.+|||||||+|.+++.+++. |.. |+|+|+|+.|+..++  ++++.... .+....+++|.+
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~-V~gvD~S~~ml~~A~--~~~~~~~~-~~~~~~~~~f~~  203 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAI-VSASDISAAMVAEAE--RRAKEALA-ALPPEVLPKFEA  203 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHHHhccc-ccccccceEEEE
Confidence            34455555532   36789999999999999998875 655 999999998666654  33321000 000123689999


Q ss_pred             cCCCCCcccccccceEEEEEecc-ccCcCH-HH-HHHHHHhcCCCCcEEEE
Q psy17227        120 GDFLTEEHREKITQASIVFVNNF-AFGPTV-DH-ALKERFQDLKDGARIVS  167 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~-~~-~l~e~~r~LkpGG~~i~  167 (268)
                      +|+.+++   .  .+|+|++... +|.++. .. .+..+. .+.+||.++.
T Consensus       204 ~Dl~~l~---~--~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        204 NDLESLS---G--KYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             cchhhcC---C--CcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence            9986542   3  3456665544 565542 22 334444 4566666664

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.23  E-value=6.5e-11  Score=86.56  Aligned_cols=101  Identities=19%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      +++|+|||+|..+..++. .+..+++|+|+++.+...++  +...     . ....+++++.+|+.+.+.. ....+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~--~~~~-----~-~~~~~~~~~~~~~~~~~~~-~~~~~d~i   70 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELAR--KAAA-----A-LLADNVEVLKGDAEELPPE-ADESFDVI   70 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHH--HHHh-----c-ccccceEEEEcChhhhccc-cCCceEEE
Confidence            489999999999998877 45556999999987444333  1111     1 1235899999999886531 12357889


Q ss_pred             EEecccc--CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        138 FVNNFAF--GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       138 ~~~~~~~--~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++..++  .......++.+.+.|||||.+++.
T Consensus        71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            8887754  456777788999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.23  E-value=1e-10  Score=99.60  Aligned_cols=103  Identities=16%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      .+.+|||+|||+|.++..+++. +.. ++|+|+|+.++..++  +++.    ..+  ..++++.++|+.+.+... ...+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-~~~-v~~iD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~d~~~~~~~~-~~~~  113 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-GAN-VTGIDASEENIEVAK--LHAK----KDP--LLKIEYRCTSVEDLAEKG-AKSF  113 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-CCe-EEEEeCCHHHHHHHH--HHHH----HcC--CCceEEEeCCHHHhhcCC-CCCc
Confidence            4789999999999999988764 555 999999987443332  3222    112  126899999998876432 1245


Q ss_pred             EEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|+++.. .|..++...+.++.++|+|||.+++.
T Consensus       114 D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~  148 (224)
T TIGR01983       114 DVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS  148 (224)
T ss_pred             cEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            67776544 56788899999999999999998876

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=2.1e-10  Score=107.39  Aligned_cols=113  Identities=14%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...++..+|++|||+|||+|+.+..++...+. .+|+++|+++.++  ..++++++    ..|.  .+++++++|+.+
T Consensus       243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl--~~~~~n~~----r~g~--~~v~~~~~D~~~  314 (434)
T PRK14901        243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL--KKLQENAQ----RLGL--KSIKILAADSRN  314 (434)
T ss_pred             HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH--HHHHHHHH----HcCC--CeEEEEeCChhh
Confidence            3555678899999999999999999999987643 4699999998743  33444444    2443  479999999988


Q ss_pred             Cc----ccccccceEEEEEeccc-------cCcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE----HREKITQASIVFVNNFA-------FGPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~----~~~~~~d~dvv~~~~~~-------~~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++    +..+  .+|.|+++..|       +.|+                ....+.++++.|||||+++.+
T Consensus       315 ~~~~~~~~~~--~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys  383 (434)
T PRK14901        315 LLELKPQWRG--YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA  383 (434)
T ss_pred             cccccccccc--cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            75    2223  35678776433       2232                234578888999999998854

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.21  E-value=1.8e-10  Score=98.43  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++  +++.    ..+.. .++++..+|+..   .+.  
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~-v~~~D~s~~~i~~a~--~~~~----~~~~~-~~i~~~~~d~~~---~~~--  126 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR-GAK-VVASDISPQMVEEAR--ERAP----EAGLA-GNITFEVGDLES---LLG--  126 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc-CCE-EEEEECCHHHHHHHH--HHHH----hcCCc-cCcEEEEcCchh---ccC--
Confidence            467889999999999999998875 555 999999998655554  3222    22221 479999999532   233  


Q ss_pred             ceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcE
Q psy17227        133 QASIVFVNNF-AFGP--TVDHALKERFQDLKDGAR  164 (268)
Q Consensus       133 d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~  164 (268)
                      .+|+|++... +|.+  +....++++.+.+++|+.
T Consensus       127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence            3566766554 3544  355667777777654443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=2.1e-10  Score=107.73  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=78.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+..++..+|++|||+|||+|+.+..++...+ ..+|+|+|+|+.++..  ++++++    ..|.  .+++++++|+.+
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~--~~~~~~----~~g~--~~v~~~~~Da~~  312 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK--IRSHAS----ALGI--TIIETIEGDARS  312 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH--HHHHHH----HhCC--CeEEEEeCcccc
Confidence            344567888999999999999999998887653 3369999999974443  334444    3343  379999999988


Q ss_pred             CcccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++ ++.  .+|+|+++..|.       .|+                ....+.++++.|||||+++..
T Consensus       313 ~~-~~~--~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys  376 (445)
T PRK14904        313 FS-PEE--QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA  376 (445)
T ss_pred             cc-cCC--CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            65 223  356777653321       111                123578888999999999965

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=2.8e-10  Score=106.35  Aligned_cols=112  Identities=12%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...+++.+|.+|||+|||+|+.+..+|...+ ..+|+++|+|+.++  ..+++++++    .|.  .+++++++|+.++
T Consensus       229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl--~~~~~n~~r----~g~--~~v~~~~~Da~~l  300 (431)
T PRK14903        229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI--QLVEKHAKR----LKL--SSIEIKIADAERL  300 (431)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH--HHHHHHHHH----cCC--CeEEEEECchhhh
Confidence            44567889999999999999999999988763 34699999999743  334455443    343  3699999999887


Q ss_pred             c-ccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E-HREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~-~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + +.+.  .+|.|+++..|-       .|+                ..+.+.++++.|||||.++.+
T Consensus       301 ~~~~~~--~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        301 TEYVQD--TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             hhhhhc--cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            6 3233  356788765441       121                133477888999999998854

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.19  E-value=2.1e-10  Score=99.05  Aligned_cols=123  Identities=20%  Similarity=0.224  Sum_probs=87.7

Q ss_pred             CcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         35 VYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        35 ~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      ...-+.+..+..++..+++.||++||+.|.|+|.++..+|+..+ ..+|+..|+.++....  ++++++    ..|. ..
T Consensus        20 rtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~--A~~n~~----~~gl-~~   92 (247)
T PF08704_consen   20 RTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK--ARKNFE----RHGL-DD   92 (247)
T ss_dssp             SS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH--HHHHHH----HTTC-CT
T ss_pred             CcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH--HHHHHH----HcCC-CC
Confidence            33446677888899999999999999999999999999998764 4579999999863333  445555    3565 35


Q ss_pred             cEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcC-CCCcEEEEe
Q psy17227        114 EFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDL-KDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~L-kpGG~~i~~  168 (268)
                      ++++.+.|+.+--|.+. ..++|.||..    .|++..++..+.++| ||||++++.
T Consensus        93 ~v~~~~~Dv~~~g~~~~~~~~~DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen   93 NVTVHHRDVCEEGFDEELESDFDAVFLD----LPDPWEAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             TEEEEES-GGCG--STT-TTSEEEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             CceeEecceecccccccccCcccEEEEe----CCCHHHHHHHHHHHHhcCCceEEEE
Confidence            89999999976444221 2467888864    578899999999999 899999986

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG1269|consensus

Probab=99.17  E-value=7.5e-11  Score=107.12  Aligned_cols=113  Identities=16%  Similarity=0.242  Sum_probs=89.6

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      +.+..++..++|+|||.|.+.++++...++. ++|+|.++.  .+.+......    ..+.. .+..++.+|+.+.||++
T Consensus       105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~-~~Gl~~n~~--e~~~~~~~~~----~~~l~-~k~~~~~~~~~~~~fed  176 (364)
T KOG1269|consen  105 RESCFPGSKVLDVGTGVGGPSRYIAVFKKAG-VVGLDNNAY--EAFRANELAK----KAYLD-NKCNFVVADFGKMPFED  176 (364)
T ss_pred             hhcCcccccccccCcCcCchhHHHHHhccCC-ccCCCcCHH--HHHHHHHHHH----HHHhh-hhcceehhhhhcCCCCc
Confidence            3467888899999999999999998866676 999999986  3333222111    11222 34556999999999999


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +.+|+ +.++.+.+|.++...+++|++|++||||.+++.++.
T Consensus       177 n~fd~-v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  177 NTFDG-VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             cccCc-EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            98887 778889999999999999999999999999987543

>PRK04457 spermidine synthase; Provisional

Probab=99.16  E-value=2e-10  Score=100.53  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||||||+|.++..+++..+..++++||+++.++.+++  +++.    ..+ ..++++++++|+.+.-- ....
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~--~~f~----~~~-~~~rv~v~~~Da~~~l~-~~~~  135 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVAR--NHFE----LPE-NGERFEVIEADGAEYIA-VHRH  135 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHcC----CCC-CCCceEEEECCHHHHHH-hCCC
Confidence            34567899999999999999988877667999999998655554  3221    111 13589999999876321 1112


Q ss_pred             ceEEEEEecccc--Cc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAF--GP---TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~--~~---~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++.+..  .+   .....++++.+.|+|||++++.
T Consensus       136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            467888875421  11   1257789999999999999985

>KOG1541|consensus

Probab=99.16  E-value=1.2e-10  Score=96.98  Aligned_cols=111  Identities=18%  Similarity=0.231  Sum_probs=79.3

Q ss_pred             HHHHHHHHHcCCCC--CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         42 DLISRMIDQINATP--DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        42 ~~~~~ll~~l~~~~--~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +...+.++.+.+..  ..-|||||||+|-.+..+.. .|.. .+|+|+|+.|..+|.. .   +         -.-.++.
T Consensus        35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~-wiGvDiSpsML~~a~~-~---e---------~egdlil   99 (270)
T KOG1541|consen   35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQ-WIGVDISPSMLEQAVE-R---E---------LEGDLIL   99 (270)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCce-EEeecCCHHHHHHHHH-h---h---------hhcCeee
Confidence            44566777777765  66799999999999876544 5654 8999999986665542 1   1         1245788


Q ss_pred             cCCCC-CcccccccceEEEEEecccc---------CcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLT-EEHREKITQASIVFVNNFAF---------GPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~-l~~~~~~~d~dvv~~~~~~~---------~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+-. +||...+||. +|++.++.|         .|.  +...|..+|.+|++|++.++-
T Consensus       100 ~DMG~GlpfrpGtFDg-~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  100 CDMGEGLPFRPGTFDG-VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             eecCCCCCCCCCccce-EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            88865 8998899998 777766532         222  233467788999999999985

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=4.3e-10  Score=98.60  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=82.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ..+-+++.+....+.+|||+|||+|-+++.+|+..+..+++-+|+|..++..|+  +++.    .++.  .+..+...|.
T Consensus       146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar--~Nl~----~N~~--~~~~v~~s~~  217 (300)
T COG2813         146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR--KNLA----ANGV--ENTEVWASNL  217 (300)
T ss_pred             HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH--HhHH----HcCC--CccEEEEecc
Confidence            345688899888777999999999999999999998878999999987555554  3333    2222  2336777776


Q ss_pred             CCCcccccccceEEEEEeccccCcC-H-H----HHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGPT-V-D----HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~~-~-~----~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+-- .+   .+|.|++|..+|.-. . .    +.+....+.|++||.+.+.
T Consensus       218 ~~~v-~~---kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         218 YEPV-EG---KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             cccc-cc---cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence            6422 12   467899998877532 2 2    3456777899999998764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.14  E-value=6.7e-10  Score=94.74  Aligned_cols=124  Identities=10%  Similarity=0.087  Sum_probs=79.9

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHH-----HHHHHHhccccccEE
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVF-----KRWMQWYGKRHGEFR  116 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~i~  116 (268)
                      ..+.+.+..+...++.+||+.|||.|.-+..+|. .|.. |+|+|+|+.++.-+......     ....... ....+++
T Consensus        30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~-~~~~~i~  106 (226)
T PRK13256         30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLS-KGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKL-YKGDDIE  106 (226)
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHh-CCCc-EEEEecCHHHHHHHHHHcCCCcceecccccce-eccCceE
Confidence            4455556667777788999999999999999987 4887 99999999643332110000     0000000 0124799


Q ss_pred             EEEcCCCCCccc-ccccceEEEEEecc-c-cCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHR-EKITQASIVFVNNF-A-FGPTV-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~-~~~~d~dvv~~~~~-~-~~~~~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+||+.+++.. +....+|.|+-..+ + ..++. .+..+.+.+.|+|||.++..
T Consensus       107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            999999998632 22224556654333 3 34454 44567888999999998864

>PHA03411 putative methyltransferase; Provisional

Probab=99.14  E-value=3.7e-10  Score=98.40  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ...++.+|||+|||+|.+++.++...+..+|+|+|+|+.++..++  ++           ..+++++++|+.++...   
T Consensus        61 ~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar--~n-----------~~~v~~v~~D~~e~~~~---  124 (279)
T PHA03411         61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK--RL-----------LPEAEWITSDVFEFESN---  124 (279)
T ss_pred             ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--Hh-----------CcCCEEEECchhhhccc---
Confidence            344567899999999999988877654446999999997555543  11           23789999999886532   


Q ss_pred             cceEEEEEeccccCc---C------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGP---T------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~---~------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|++|..++..   +                  +...+...-..|+|+|.+.+.
T Consensus       125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            246788888664431   1                  122334445789999987644

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.14  E-value=2.9e-10  Score=104.94  Aligned_cols=108  Identities=12%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~  131 (268)
                      .++.+|||+|||+|.+++.++. .++.+|++||+|+.++..++  ++++    .++....+++++++|+.+.-  +....
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~--~N~~----~Ngl~~~~v~~i~~D~~~~l~~~~~~~  291 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIAR--QNVE----LNKLDLSKAEFVRDDVFKLLRTYRDRG  291 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHH--HHHH----HcCCCCCcEEEEEccHHHHHHHHHhcC
Confidence            4688999999999999987654 46667999999998555543  4443    23432247999999998742  21111


Q ss_pred             cceEEEEEeccccCcCHH----------HHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVD----------HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~----------~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|+++...+.....          ..+....+.|||||.++++
T Consensus       292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            246889998776654421          2223456899999999965

>PRK00811 spermidine synthase; Provisional

Probab=99.13  E-value=3.5e-10  Score=100.12  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCCCccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      .+..+|||||||+|.+++.+++..+..+|++||+++.++.+++  +.+....  .+. ..++++++.+|+.+.-- ....
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~--~~~~~~~--~~~~~d~rv~v~~~Da~~~l~-~~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCR--KYLPEIA--GGAYDDPRVELVIGDGIKFVA-ETEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHH--HHhHHhc--cccccCCceEEEECchHHHHh-hCCC
Confidence            3567899999999999999887656667999999998666654  3332210  011 24689999999876321 1123


Q ss_pred             ceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++..- +.+.    ....++.+.+.|+|||++++.
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            56888887542 2221    144567888999999999974

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=3.1e-10  Score=98.00  Aligned_cols=109  Identities=17%  Similarity=0.260  Sum_probs=79.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+....++.+..+|||||+|.|.++..+++.++.-+++.+|+-+ .+..++  +            .++++++.||+. -
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~~~--~------------~~rv~~~~gd~f-~  154 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VIEQAK--E------------ADRVEFVPGDFF-D  154 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HHCCHH--H------------TTTEEEEES-TT-T
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hhhccc--c------------ccccccccccHH-h
Confidence            45566678888899999999999999999999988899999953 122211  1            359999999998 4


Q ss_pred             cccccccceEEEEEeccccC-cC--HHHHHHHHHhcCCCC--cEEEEeCCCCCC
Q psy17227        126 EHREKITQASIVFVNNFAFG-PT--VDHALKERFQDLKDG--ARIVSSKSFCPL  174 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~-~~--~~~~l~e~~r~LkpG--G~~i~~~~~~~~  174 (268)
                      +++.    +|+|++..++|. ++  ....|+++++.|+||  |++++.+.+.|+
T Consensus       155 ~~P~----~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  155 PLPV----ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             CCSS----ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             hhcc----ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence            4433    678888777654 33  445589999999999  999998665443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.12  E-value=5.6e-10  Score=96.17  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-c
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-H  127 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~  127 (268)
                      +...++.+|||||||+|..++.+|+..+ ..+++++|+++.+..+|+  ++++    ..|.. .+++++.||+.+. + +
T Consensus        64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~--~n~~----~~gl~-~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL--EFIK----KAGVD-HKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CcEEEEEccHHHHHHHH
Confidence            3556778999999999999888887653 447999999997555443  4444    34543 5899999999773 2 1


Q ss_pred             ccc--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REK--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+  ...+|+||++..  .+.....+..+.+.|||||.+++-
T Consensus       137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            111  134678988643  234556788889999999999885

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.12  E-value=1.2e-10  Score=94.59  Aligned_cols=82  Identities=16%  Similarity=0.086  Sum_probs=59.7

Q ss_pred             EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCC
Q psy17227         83 WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKD  161 (268)
Q Consensus        83 ~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~Lkp  161 (268)
                      +|+|+|+.|+.+|+.+....    ..+. ..+++|+++|+.++|++++.+|  +|++. .+.+.+++...+++++|+|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~----~~~~-~~~i~~~~~d~~~lp~~~~~fD--~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLK----ARSC-YKCIEWIEGDAIDLPFDDCEFD--AVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcc----cccC-CCceEEEEechhhCCCCCCCee--EEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            59999999777765222111    0111 2379999999999998776555  45544 445678999999999999999


Q ss_pred             CcEEEEeCCC
Q psy17227        162 GARIVSSKSF  171 (268)
Q Consensus       162 GG~~i~~~~~  171 (268)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999987443

>KOG2899|consensus

Probab=99.11  E-value=3.5e-10  Score=95.53  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc---------------------
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR---------------------  111 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~---------------------  111 (268)
                      +..+..+|||||-.|.++..+|+.+++..+.|+||++.  .+.+|+++++..+...+..                     
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            44567799999999999999999999999999999996  4444556555433222110                     


Q ss_pred             ---------------cccEEEEEcCCCCCcccccccceEEEEEecc---cc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 ---------------HGEFRLVKGDFLTEEHREKITQASIVFVNNF---AF----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 ---------------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~---~~----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                                     ..|..+...|+.++    ....+|+|+|-++   .|    +..+...|+++++.|.|||++|+-
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDM----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhh----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                           01222223333221    1124567766543   22    344888899999999999999994

>KOG3010|consensus

Probab=99.11  E-value=1.5e-10  Score=97.82  Aligned_cols=99  Identities=13%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      ..+|||||+|..++.+|..+ . +|+|+|+|+.|+.+++  +..+..     -.....++...++.+|--.+  .++|+|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~-k-~VIatD~s~~mL~~a~--k~~~~~-----y~~t~~~ms~~~~v~L~g~e--~SVDlI  104 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHY-K-EVIATDVSEAMLKVAK--KHPPVT-----YCHTPSTMSSDEMVDLLGGE--ESVDLI  104 (261)
T ss_pred             eEEEeccCCCcchHHHHHhh-h-hheeecCCHHHHHHhh--cCCCcc-----cccCCccccccccccccCCC--cceeee
Confidence            79999999998888777653 3 3999999998666554  111000     00123445555555444223  467899


Q ss_pred             EEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        138 FVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      .+...+||-++...+++++|+|||.|.++.
T Consensus       105 ~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  105 TAAQAVHWFDLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             hhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence            888778999999999999999988664443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.10  E-value=8.8e-10  Score=104.95  Aligned_cols=104  Identities=11%  Similarity=0.095  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      ++.+|||||||+|.+++.++...+..+|+|+|+|+.++..|+  +++.    ..+. ..+++++++|+.+. +++.  .+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~--~N~~----~~~l-~~~v~~~~~D~~~~-~~~~--~f  207 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK--SNAI----KYEV-TDRIQIIHSNWFEN-IEKQ--KF  207 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH--HHHH----HcCC-ccceeeeecchhhh-CcCC--Cc
Confidence            356899999999999999988776667999999998666554  4333    2333 24799999998642 2122  46


Q ss_pred             EEEEEeccccCc-----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGP-----------------------T----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~-----------------------~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|++|..+...                       +    ....+.++.+.|||||.+++.
T Consensus       208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            788886542211                       0    112345566799999999874

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.10  E-value=7.1e-10  Score=97.65  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .....+..+++.+++.++++|||||||+|.++..+++.. . +|+|+|+++.++..++  +++.         ..+++++
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~d~~~~~~~~--~~~~---------~~~v~~i   92 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-A-KVTAVEIDRDLAPILA--ETFA---------EDNLTII   92 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-C-cEEEEECCHHHHHHHH--Hhhc---------cCceEEE
Confidence            344567788899999999999999999999999998874 3 4999999997544432  2211         2589999


Q ss_pred             EcCCCCCcccccccceEEEEEecccc
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAF  144 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~  144 (268)
                      ++|+.++++++-.  .+.|++|..++
T Consensus        93 ~~D~~~~~~~~~~--~~~vv~NlPY~  116 (272)
T PRK00274         93 EGDALKVDLSELQ--PLKVVANLPYN  116 (272)
T ss_pred             EChhhcCCHHHcC--cceEEEeCCcc
Confidence            9999998865321  24677775443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.5e-09  Score=95.83  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      +|||||||+|.+++.+|...+...|+|+|+|+.++.+|+  +++..    +|.  .++.++++|..+--    ...+|+|
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~--~Na~~----~~l--~~~~~~~~dlf~~~----~~~fDlI  180 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR--ENAER----NGL--VRVLVVQSDLFEPL----RGKFDLI  180 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH--HHHHH----cCC--ccEEEEeeeccccc----CCceeEE
Confidence            799999999999999999887667999999998666655  44442    343  46777887865421    1257888


Q ss_pred             EEeccccCcC------------H----------HHH----HHHHHhcCCCCcEEEEe
Q psy17227        138 FVNNFAFGPT------------V----------DHA----LKERFQDLKDGARIVSS  168 (268)
Q Consensus       138 ~~~~~~~~~~------------~----------~~~----l~e~~r~LkpGG~~i~~  168 (268)
                      ++|..+...+            +          ...    +.++-+.|+|||.+++-
T Consensus       181 VsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         181 VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             EeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence            8886543221            1          112    34445789999999875

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.08  E-value=5.1e-10  Score=100.89  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc----cccEEEEEcCCCCCcc---
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR----HGEFRLVKGDFLTEEH---  127 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~i~~~~gD~~~l~~---  127 (268)
                      ++.+|||||||-|+-+..+.. .+...++|+|+|+.  .++++++++++..+.....    .-...|+.+|...-.+   
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~--si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEE--SIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HH--HHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred             CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHH--HHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence            789999999999998888766 46677999999986  4444555553211110000    1257889999886442   


Q ss_pred             -cccccceEEEEEecccc-C--c--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 -REKITQASIVFVNNFAF-G--P--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 -~~~~~d~dvv~~~~~~~-~--~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ......+|+|++.-.+| .  .  .....++.+.+.|||||.||.|
T Consensus       139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence             22223578998864332 2  2  2445688999999999999987

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.08  E-value=4.5e-10  Score=95.62  Aligned_cols=122  Identities=18%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc----cccccEEE
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG----KRHGEFRL  117 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~----~~~~~i~~  117 (268)
                      ..+.++++.++..++.+||+.|||.|.-+..+|.+ |.. |+|||+|+.++..+.............+    -..++|++
T Consensus        24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            45666777788889999999999999999999875 776 9999999863333210000000000000    01247899


Q ss_pred             EEcCCCCCcccccccceEEEEEeccc--cCcCH-HHHHHHHHhcCCCCcEEE
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFA--FGPTV-DHALKERFQDLKDGARIV  166 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~--~~~~~-~~~l~e~~r~LkpGG~~i  166 (268)
                      .+||+++++... ...+|+|+=..++  ..|+. .+..+.+.+.|||||.++
T Consensus       102 ~~gDfF~l~~~~-~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  102 YCGDFFELPPED-VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             EES-TTTGGGSC-HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred             EEcccccCChhh-cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence            999999987432 2246777744332  34554 445677789999999943

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.08  E-value=1.9e-09  Score=90.55  Aligned_cols=121  Identities=17%  Similarity=0.065  Sum_probs=78.8

Q ss_pred             cCcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         38 ETSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ++.......+++.+. ..++.+|||+|||+|.+++.++.. ++.+|+++|+++.++..++  ++++.    .+.  .+++
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~--~Nl~~----~~~--~~v~  105 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLI--KNLAT----LKA--GNAR  105 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHH--HHHHH----hCC--CcEE
Confidence            344444455666653 356789999999999999865443 4557999999997555543  44432    332  3799


Q ss_pred             EEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~  168 (268)
                      ++++|+.+.-. .....+|+|+++..+...-....+..+..  .|+|++.+++.
T Consensus       106 ~~~~D~~~~l~-~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        106 VVNTNALSFLA-QPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             EEEchHHHHHh-hcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            99999876321 11124789999877543333344444443  48999988875

>PLN02366 spermidine synthase

Probab=99.07  E-value=9.1e-10  Score=98.37  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=79.3

Q ss_pred             HHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         45 SRMIDQIN---ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        45 ~~ll~~l~---~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+++..+.   ..+..+||+||||.|.+++.+++..+..+|+.+|+++.++.+++  +.+...  ..+...++++++.+|
T Consensus        78 ~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar--~~f~~~--~~~~~dpRv~vi~~D  153 (308)
T PLN02366         78 QEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSK--KFFPDL--AVGFDDPRVNLHIGD  153 (308)
T ss_pred             HHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHH--Hhhhhh--ccccCCCceEEEECh
Confidence            44554433   35568899999999999999987655567999999998666654  333321  112345689999999


Q ss_pred             CCCCcccccccceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.--......+|+|++...- +.+.    -...++.+.+.|+|||.+++.
T Consensus       154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            8653110001246788886542 1121    234578888999999999863

>KOG1975|consensus

Probab=99.07  E-value=8e-10  Score=96.86  Aligned_cols=115  Identities=20%  Similarity=0.264  Sum_probs=77.6

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCCCC---
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFLTE---  125 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~~l---  125 (268)
                      ..-.++++.++|+|||.|+-++.+-+ .|...++|+||++.  .+.+++++++. +...-.+ .-.+.|++||...-   
T Consensus       112 ~~y~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAev--SI~qa~~RYrd-m~~r~~~~~f~a~f~~~Dc~~~~l~  187 (389)
T KOG1975|consen  112 NLYTKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEV--SINQARKRYRD-MKNRFKKFIFTAVFIAADCFKERLM  187 (389)
T ss_pred             HHHhccccccceeccCCcccHhHhhh-hcccceEeeehhhc--cHHHHHHHHHH-HHhhhhcccceeEEEEeccchhHHH
Confidence            33467889999999999999988754 57777999999986  44445555543 1111100 11588999998863   


Q ss_pred             ---cccccccceEEEEEeccc---cC--cCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        126 ---EHREKITQASIVFVNNFA---FG--PTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       126 ---~~~~~~~d~dvv~~~~~~---~~--~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                         +++++  .+|+|++.-.+   |.  .....+++++.+.|||||.||.|.|
T Consensus       188 d~~e~~dp--~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  188 DLLEFKDP--RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             HhccCCCC--CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence               33333  26778764332   22  2355568999999999999998733

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.06  E-value=8.1e-10  Score=92.56  Aligned_cols=101  Identities=17%  Similarity=0.203  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc--ccccccce
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE--HREKITQA  134 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~--~~~~~~d~  134 (268)
                      .+||||||.|.+++.+|...+...++|||++..  .++++...+.    ..+  ..|+.++++|+.. ++  ++++  .+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~--~v~~a~~~~~----~~~--l~Nv~~~~~da~~~l~~~~~~~--~v   89 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKK--RVAKALRKAE----KRG--LKNVRFLRGDARELLRRLFPPG--SV   89 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH--HHHHHHHHHH----HHT--TSSEEEEES-CTTHHHHHSTTT--SE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchH--HHHHHHHHHH----hhc--ccceEEEEccHHHHHhhcccCC--ch
Confidence            899999999999999999998888999999986  4444333333    233  4699999999988 43  2222  45


Q ss_pred             EEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |-|+++-.--|+..         ...+..+.++|||||.|.+.
T Consensus        90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence            66776532222221         23467788999999999754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.05  E-value=1.5e-09  Score=94.89  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ....+..+++.+++.++++|||||||+|.++..+++. +. +++|+|+++.++..++  +++.        ..+++++++
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~-~v~~vEid~~~~~~l~--~~~~--------~~~~v~ii~   81 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AK-KVYAIELDPRLAEFLR--DDEI--------AAGNVEIIE   81 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CC-EEEEEECCHHHHHHHH--HHhc--------cCCCEEEEE
Confidence            4566778999999999999999999999999999886 44 4999999997544433  2221        135899999


Q ss_pred             cCCCCCcccccccceEEEEEeccccC
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFG  145 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~  145 (268)
                      +|+.+++++    ++|.|++|..++.
T Consensus        82 ~D~~~~~~~----~~d~Vv~NlPy~i  103 (258)
T PRK14896         82 GDALKVDLP----EFNKVVSNLPYQI  103 (258)
T ss_pred             eccccCCch----hceEEEEcCCccc
Confidence            999988764    2467888766554

>KOG1499|consensus

Probab=99.04  E-value=7.4e-10  Score=98.43  Aligned_cols=104  Identities=20%  Similarity=0.326  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .+-.+.+|||||||||-++...|+ .|+.+|+|||.|.- +..|  .+.+    +..+.. ..|++++|.++++.+|  .
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~i-a~~a--~~iv----~~N~~~-~ii~vi~gkvEdi~LP--~  125 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSI-ADFA--RKIV----KDNGLE-DVITVIKGKVEDIELP--V  125 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHH-HHHH--HHHH----HhcCcc-ceEEEeecceEEEecC--c
Confidence            356789999999999999986555 68888999999972 2222  2322    234443 4699999999997665  3


Q ss_pred             cceEEEEEe---ccccCcCHHHHHHHHH-hcCCCCcEEE
Q psy17227        132 TQASIVFVN---NFAFGPTVDHALKERF-QDLKDGARIV  166 (268)
Q Consensus       132 ~d~dvv~~~---~~~~~~~~~~~l~e~~-r~LkpGG~~i  166 (268)
                      ..+|+|+++   .+++...+...+.-.. +.|+|||.++
T Consensus       126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            467888765   1223333333333333 7899999986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.03  E-value=9.3e-10  Score=108.70  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+|.+|||+|||+|.+++.+|+ .|..+|++||+|+.++..++  ++++    ..+....+++++++|+.+.-- .....
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~--~N~~----~ng~~~~~v~~i~~D~~~~l~-~~~~~  608 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAE--RNFA----LNGLSGRQHRLIQADCLAWLK-EAREQ  608 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHH--HHHH----HhCCCccceEEEEccHHHHHH-HcCCC
Confidence            4578999999999999998876 47767999999998555544  4443    234432479999999876321 10125


Q ss_pred             eEEEEEeccccCc------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGP------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+++...+..            +....+..+.+.|+|||.+++.
T Consensus       609 fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~  655 (702)
T PRK11783        609 FDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS  655 (702)
T ss_pred             cCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            6889988654432            1233456667899999999875

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.6e-09  Score=87.41  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      ..+.-.|.+|+|+|||||.+++.++ ..|..+|+|+|++++++.+++  +++.+       -.++++|+++|+.+..-  
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~-~lGa~~V~~vdiD~~a~ei~r--~N~~~-------l~g~v~f~~~dv~~~~~--  107 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAA-LLGASRVLAVDIDPEALEIAR--ANAEE-------LLGDVEFVVADVSDFRG--  107 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHH-hcCCcEEEEEecCHHHHHHHH--HHHHh-------hCCceEEEEcchhhcCC--
Confidence            4466678899999999999998654 478888999999998666655  33332       13689999999998663  


Q ss_pred             cccceEEEEEecc
Q psy17227        130 KITQASIVFVNNF  142 (268)
Q Consensus       130 ~~~d~dvv~~~~~  142 (268)
                         .+|.+++|..
T Consensus       108 ---~~dtvimNPP  117 (198)
T COG2263         108 ---KFDTVIMNPP  117 (198)
T ss_pred             ---ccceEEECCC
Confidence               2346777754

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.02  E-value=3e-09  Score=99.91  Aligned_cols=110  Identities=16%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+++.+.+.++.+|||+|||+|.+++.+|+..  .+|+|+|+|+.|+..|+  ++++    ..+.  .+++|+++|+.
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~--~n~~----~~~~--~~v~~~~~d~~  355 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAR--ENAR----RNGL--DNVTFYHANLE  355 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHH--HHHH----HcCC--CceEEEEeChH
Confidence            3456677788889999999999999999988763  35999999998666654  3333    2232  47999999997


Q ss_pred             CC----cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TE----EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l----~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.    ++.+.  .+|+|+++...-.  ....+..+.+ ++|++.++++
T Consensus       356 ~~l~~~~~~~~--~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        356 EDFTDQPWALG--GFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             HhhhhhhhhcC--CCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEE
Confidence            52    22222  3578888654322  3344544434 7888887765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.01  E-value=1.2e-10  Score=97.51  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ..+..+..++.+++..+=.++||||||||-.+..+-...  ...+|+|||++|+..|..+-.+.             ++.
T Consensus       109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD-------------~L~  173 (287)
T COG4976         109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD-------------TLY  173 (287)
T ss_pred             ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH-------------HHH
Confidence            456788899999988888899999999999987664432  33899999998655554222121             122


Q ss_pred             EcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|...+--......+|+|....+ .+.-++...+.-+...|+|||.|+++
T Consensus       174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence            223221100001124567665444 56778888999999999999999986

>PHA03412 putative methyltransferase; Provisional

Probab=99.00  E-value=2.9e-09  Score=90.85  Aligned_cols=94  Identities=18%  Similarity=0.109  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .+.+|||+|||+|.+++.++++.   +...|+|||+++.+..+|+  ++           ..++.++++|+.+.++.   
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar--~n-----------~~~~~~~~~D~~~~~~~---  112 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK--RI-----------VPEATWINADALTTEFD---  112 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH--hh-----------ccCCEEEEcchhccccc---
Confidence            46799999999999999888753   2336999999997555554  11           13688999999876542   


Q ss_pred             cceEEEEEeccccCcC-------------HHHHHHHHHhcCCCCcE
Q psy17227        132 TQASIVFVNNFAFGPT-------------VDHALKERFQDLKDGAR  164 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~-------------~~~~l~e~~r~LkpGG~  164 (268)
                      ..+|+|++|..++...             ....+....+.++||+.
T Consensus       113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            2568899987654211             23345666676666665

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.98  E-value=5.2e-09  Score=93.48  Aligned_cols=122  Identities=18%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      +...+.....+++...+++|+.|||==||||++++.+. ..|+. ++|.|++..|+.-+  +.|++.+    +  .....
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~-viG~Did~~mv~ga--k~Nl~~y----~--i~~~~  248 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGAR-VIGSDIDERMVRGA--KINLEYY----G--IEDYP  248 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCce-EeecchHHHHHhhh--hhhhhhh----C--cCcee
Confidence            44555555667788899999999999999999999854 47888 99999999755554  4555532    2  23565


Q ss_pred             EEEc-CCCCCcccccccceEEEEEeccc------cCcC----HHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        117 LVKG-DFLTEEHREKITQASIVFVNNFA------FGPT----VDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       117 ~~~g-D~~~l~~~~~~~d~dvv~~~~~~------~~~~----~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +..+ |+.++|++++++  |.|.+...+      ....    ..+.+....++||+||++++.-+
T Consensus       249 ~~~~~Da~~lpl~~~~v--daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         249 VLKVLDATNLPLRDNSV--DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             EEEecccccCCCCCCcc--ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            6666 999999887644  556665432      2222    34556777899999999998634

>PRK01581 speE spermidine synthase; Validated

Probab=98.97  E-value=1.7e-09  Score=97.66  Aligned_cols=113  Identities=10%  Similarity=-0.054  Sum_probs=74.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||+||||+|..++.+++..+..+|++||+++.++.+|+....+... ...+...++++++.+|+.+.-. .....
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-~~~~~~DpRV~vvi~Da~~fL~-~~~~~  226 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-NKSAFFDNRVNVHVCDAKEFLS-SPSSL  226 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-ccccCCCCceEEEECcHHHHHH-hcCCC
Confidence            344689999999999998888755556799999999877776621111110 0011234699999999987321 11234


Q ss_pred             eEEEEEeccccC----cC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFG----PT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~----~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+++..-..    ..  -...+..+.+.|+|||++++.
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            788988743110    00  134578888999999999875

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.96  E-value=4.9e-09  Score=94.24  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      .+.+...++.+|||+|||+|.+++.+|.. +. +|+|+|+|+.++..++  ++++    ..+.  .+++|+++|+.++..
T Consensus       166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~-~V~gvD~s~~av~~A~--~n~~----~~~l--~~v~~~~~D~~~~~~  235 (315)
T PRK03522        166 RDWVRELPPRSMWDLFCGVGGFGLHCATP-GM-QLTGIEISAEAIACAK--QSAA----ELGL--TNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHhcCCCEEEEccCCCCHHHHHHHhc-CC-EEEEEeCCHHHHHHHH--HHHH----HcCC--CceEEEEcCHHHHHH
Confidence            34444446789999999999999998874 44 5999999998655544  3333    2333  479999999987542


Q ss_pred             cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .. ...+|+|+++...  ......+.+....++|++.++++
T Consensus       236 ~~-~~~~D~Vv~dPPr--~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        236 AQ-GEVPDLVLVNPPR--RGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             hc-CCCCeEEEECCCC--CCccHHHHHHHHHcCCCeEEEEE
Confidence            11 1246788887441  12233444555567888877765

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.95  E-value=4.7e-10  Score=93.33  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCCC-CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATP-DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~-~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      -+..+++.+.-.| +..|-|+|||.+.++..+.  .+. +|...|+-..                       +-.++.+|
T Consensus        59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~-~V~SfDLva~-----------------------n~~Vtacd  112 (219)
T PF05148_consen   59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKH-KVHSFDLVAP-----------------------NPRVTACD  112 (219)
T ss_dssp             HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S----EEEEESS-S-----------------------STTEEES-
T ss_pred             cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCc-eEEEeeccCC-----------------------CCCEEEec
Confidence            4566777776444 5689999999999985321  223 4999999852                       22378899


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.|+++.+  +|++++...+...+....+.|.+|+|||||.+.+.
T Consensus       113 ia~vPL~~~s--vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IA  157 (219)
T PF05148_consen  113 IANVPLEDES--VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIA  157 (219)
T ss_dssp             TTS-S--TT---EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccCcCCCCc--eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEE
Confidence            9999998765  45555555568899999999999999999999987

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2361|consensus

Probab=98.94  E-value=1.7e-09  Score=91.44  Aligned_cols=102  Identities=13%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC----cccccc
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE----EHREKI  131 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l----~~~~~~  131 (268)
                      ++|+||||.|+....+.+..+.  -++++.|.||.++.+-+.+...         ...++.-.+-|+...    |....+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~---------~e~~~~afv~Dlt~~~~~~~~~~~s  144 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY---------DESRVEAFVWDLTSPSLKEPPEEGS  144 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc---------chhhhcccceeccchhccCCCCcCc
Confidence            7999999999999999887655  4799999999855554421111         122444444455432    222333


Q ss_pred             cce-EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQA-SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~-dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .|. .+||+-+.++......++.+++++|||||.+++.
T Consensus       145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence            443 3456656678888999999999999999999996

>TIGR00417 speE spermidine synthase

Probab=98.93  E-value=8.2e-09  Score=90.81  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~  132 (268)
                      ..+.+||+||||+|.++..+++..+..+++++|+++.++..++  +.+....  .....++++++.+|..+. ....  .
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~--~~~~~~~--~~~~~~~v~i~~~D~~~~l~~~~--~  144 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSK--KFLPSLA--GSYDDPRVDLQIDDGFKFLADTE--N  144 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHH--HHhHhhc--ccccCCceEEEECchHHHHHhCC--C
Confidence            3455999999999999998877654567999999997555544  3332211  012235799999998652 1111  2


Q ss_pred             ceEEEEEecccc-CcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAF-GPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~-~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++.... .+.    ....++.+.+.|+|||++++.
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            467888876521 111    345678888999999999975

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.92  E-value=1.6e-08  Score=88.19  Aligned_cols=91  Identities=16%  Similarity=0.218  Sum_probs=66.5

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ....+.++++.+++.++++|||||||+|.++..+++.. .. ++|+|+++.+...++  +++.        ...++++++
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~-v~~iE~d~~~~~~l~--~~~~--------~~~~v~v~~   81 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KK-VTAIEIDPRLAEILR--KLLS--------LYERLEVIE   81 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-Cc-EEEEECCHHHHHHHH--HHhC--------cCCcEEEEE
Confidence            45667889999999999999999999999999998865 33 999999997444332  2211        135899999


Q ss_pred             cCCCCCcccccccce-EEEEEecccc
Q psy17227        120 GDFLTEEHREKITQA-SIVFVNNFAF  144 (268)
Q Consensus       120 gD~~~l~~~~~~~d~-dvv~~~~~~~  144 (268)
                      +|+.++++..  ++. ++|++|..++
T Consensus        82 ~D~~~~~~~~--~d~~~~vvsNlPy~  105 (253)
T TIGR00755        82 GDALKVDLPD--FPKQLKVVSNLPYN  105 (253)
T ss_pred             CchhcCChhH--cCCcceEEEcCChh
Confidence            9999988652  221 2566664444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1500|consensus

Probab=98.91  E-value=7.4e-09  Score=91.30  Aligned_cols=110  Identities=16%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +++.--.-.+..|||+|||.|-++..+| ..|+++|++|+.|+ |...|+      +.+....+ .++|.+|.|-++++.
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAa-qAGA~~vYAvEAS~-MAqyA~------~Lv~~N~~-~~rItVI~GKiEdie  239 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAA-QAGAKKVYAVEASE-MAQYAR------KLVASNNL-ADRITVIPGKIEDIE  239 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHH-HhCcceEEEEehhH-HHHHHH------HHHhcCCc-cceEEEccCcccccc
Confidence            3333333467889999999999998655 57898999999997 344433      32323333 368999999999988


Q ss_pred             ccccccceEEEEEecc---ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNF---AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++   .+|+++++..   ++.+.+....-...+.|||.|..+=+
T Consensus       240 LPE---k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  240 LPE---KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             Cch---hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence            775   5788888644   34444555555555899999987643

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.91  E-value=2.4e-08  Score=83.28  Aligned_cols=115  Identities=14%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++..+. .-++.+|||++||+|.+++.++.+ |+.+|++||.++.++..++  ++++.    .+. ..+++++++|+.+
T Consensus        39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~--~N~~~----~~~-~~~~~~~~~D~~~  110 (189)
T TIGR00095        39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLK--ENLAL----LKS-GEQAEVVRNSALR  110 (189)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHH--HHHHH----hCC-cccEEEEehhHHH
Confidence            3444442 346889999999999999987764 6667999999997555543  44432    232 2479999999965


Q ss_pred             C-c-ccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        125 E-E-HREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       125 l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      . . +......+|+|+....+........+..+.  ..|+++|.+++-
T Consensus       111 ~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       111 ALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             HHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            3 2 111111247888776654333444555444  478999988874

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=9.7e-09  Score=91.28  Aligned_cols=93  Identities=13%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+.++++.+++.++++|||||||+|.++..++.. +. +|+|+|+++.++..++  +++.    ..+. .++++++++
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~-~V~avEiD~~li~~l~--~~~~----~~~~-~~~v~ii~~   92 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AK-KVIAIEIDPRMVAELK--KRFQ----NSPL-ASKLEVIEG   92 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CC-cEEEEECCHHHHHHHH--HHHH----hcCC-CCcEEEEEC
Confidence            466778999999999999999999999999988875 33 4999999997555443  3332    1221 358999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGP  146 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~  146 (268)
                      |+.+.+++    .+|+|++|..++..
T Consensus        93 Dal~~~~~----~~d~VvaNlPY~Is  114 (294)
T PTZ00338         93 DALKTEFP----YFDVCVANVPYQIS  114 (294)
T ss_pred             CHhhhccc----ccCEEEecCCcccC
Confidence            99886643    34677777665543

>PRK03612 spermidine synthase; Provisional

Probab=98.90  E-value=4.2e-09  Score=100.78  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=74.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      +++.+|||||||+|..++.+++..+..+++++|+++.++.+++.+..+.. ........++++++++|..+.-- .....
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~-~~~~~~~dprv~vi~~Da~~~l~-~~~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRA-LNGGALDDPRVTVVNDDAFNWLR-KLAEK  373 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchh-hhccccCCCceEEEEChHHHHHH-hCCCC
Confidence            45678999999999999998874333679999999987666652101111 00011234689999999987321 11135


Q ss_pred             eEEEEEecccc-CcCH-----HHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAF-GPTV-----DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~-~~~~-----~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+++.... .+..     ...++.+.+.|||||++++.
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~  414 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ  414 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence            68888875422 1211     23577888999999999975

>PLN02672 methionine S-methyltransferase

Probab=98.90  E-value=9.7e-09  Score=104.25  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH-HHhc---------cccccEEEEEcCCCCC
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM-QWYG---------KRHGEFRLVKGDFLTE  125 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~---------~~~~~i~~~~gD~~~l  125 (268)
                      +.+|||||||+|.+++.+++..+..+|+|+|+|+.++.+|+  ++++... ...|         ....+++|+++|+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~--~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW--INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence            46899999999999999999877567999999998777765  3333200 0000         0113799999999764


Q ss_pred             cccccccceEEEEEecc
Q psy17227        126 EHREKITQASIVFVNNF  142 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~  142 (268)
                      . .+....+|+|++|..
T Consensus       197 ~-~~~~~~fDlIVSNPP  212 (1082)
T PLN02672        197 C-RDNNIELDRIVGCIP  212 (1082)
T ss_pred             c-cccCCceEEEEECCC
Confidence            3 111114788888765

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.89  E-value=9.6e-09  Score=96.21  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH---h-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA---T-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~---~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      +..|+|||||+|-++..+++.   . +..+|++||.|+.+....+  +.    ++..+. .++|+++++|++++..++  
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~--~~----v~~n~w-~~~V~vi~~d~r~v~lpe--  257 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ--KR----VNANGW-GDKVTVIHGDMREVELPE--  257 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH--HH----HHHTTT-TTTEEEEES-TTTSCHSS--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH--HH----HHhcCC-CCeEEEEeCcccCCCCCC--
Confidence            578999999999998655432   2 3457999999986333222  11    122333 258999999999988664  


Q ss_pred             cceEEEEEecc-c--cCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        132 TQASIVFVNNF-A--FGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       132 ~d~dvv~~~~~-~--~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                       .+|+|+++.. .  ..+-....+...-|.|||||.++
T Consensus       258 -kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  258 -KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             --EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             -ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence             6899988644 2  22334455666668999999987

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1661|consensus

Probab=98.89  E-value=5.3e-09  Score=86.66  Aligned_cols=116  Identities=20%  Similarity=0.306  Sum_probs=84.6

Q ss_pred             HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEE--EEEeCCCChhHHHHHHHHHHHHHH----HhccccccE
Q psy17227         44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKIC--WGVEKADLPAKYAEMHTVFKRWMQ----WYGKRHGEF  115 (268)
Q Consensus        44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v--~GiD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~i  115 (268)
                      -..+++.|.  +.||-++||||+|+|.++..++...++.-.  +|||.-++.+..++  +++++...    .-..+..++
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk--~nl~k~i~~~e~~~~~~~~~l  146 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK--KNLDKDITTSESSSKLKRGEL  146 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHH--HHHHhhccCchhhhhhccCce
Confidence            346777776  899999999999999999988877666533  99999998666655  45554331    112234689


Q ss_pred             EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++.||.....-+.  ..+|.|.+.+.     ..+..+++...|||||++++-
T Consensus       147 ~ivvGDgr~g~~e~--a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  147 SIVVGDGRKGYAEQ--APYDAIHVGAA-----ASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             EEEeCCccccCCcc--CCcceEEEccC-----ccccHHHHHHhhccCCeEEEe
Confidence            99999998865333  34577887633     345567888999999999983

>KOG3045|consensus

Probab=98.88  E-value=6.9e-09  Score=88.53  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCCCC-CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINATPD-DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~-~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +..++.++..+|+ ..|-|+|||-+.++.    .... .|+..|+-+.                       +-+++.+|+
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~-kV~SfDL~a~-----------------------~~~V~~cDm  219 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERH-KVHSFDLVAV-----------------------NERVIACDM  219 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----cccc-ceeeeeeecC-----------------------CCceeeccc
Confidence            4567888876664 468999999998864    2233 4899999752                       455788999


Q ss_pred             CCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.|+++.+-|  |+++...+...++...+.|++|+|||||.+.+.
T Consensus       220 ~~vPl~d~svD--vaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  220 RNVPLEDESVD--VAVFCLSLMGTNLADFIKEANRILKPGGLLYIA  263 (325)
T ss_pred             cCCcCccCccc--EEEeeHhhhcccHHHHHHHHHHHhccCceEEEE
Confidence            99999887554  444444457899999999999999999999987

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.87  E-value=2.4e-08  Score=85.85  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=76.1

Q ss_pred             CcHHHHHHHHHHcC--C---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         39 TSFDLISRMIDQIN--A---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        39 ~~~~~~~~ll~~l~--~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      .+.+.+.+++..-+  .   ....++||||.|.|..+..++..+..  |++.|+|+.      |+.++++         .
T Consensus        73 fS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~------Mr~rL~~---------k  135 (265)
T PF05219_consen   73 FSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPP------MRWRLSK---------K  135 (265)
T ss_pred             ecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcce--EEeecCCHH------HHHHHHh---------C
Confidence            34456666665441  1   24567999999999999999876544  899999986      4444442         1


Q ss_pred             cEEEEEcCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+++  |..++.  +....+|+|+|.+.+ ...++...++.+++.|+|+|++++.
T Consensus       136 g~~vl--~~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  136 GFTVL--DIDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             CCeEE--ehhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            33333  232332  122467899998876 5678999999999999999999865

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.87  E-value=2.9e-08  Score=84.92  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE-EEEEc
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF-RLVKG  120 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~~g  120 (268)
                      .+..+++.+++ .++.+|||+|||||.++..+++. |..+|+|+|+++.|  +..   .+++        +.++ .+...
T Consensus        62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~--l~~---~l~~--------~~~v~~~~~~  127 (228)
T TIGR00478        62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQ--LAE---KLRQ--------DERVKVLERT  127 (228)
T ss_pred             HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHH--HHH---HHhc--------CCCeeEeecC
Confidence            34567777776 47889999999999999988875 77779999999863  221   1211        2233 24444


Q ss_pred             CCCCCcccc---cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHRE---KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~---~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+..+...+   +...+|++|+..       ...+..+.+.|+| |.+++.
T Consensus       128 ni~~~~~~~~~~d~~~~DvsfiS~-------~~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       128 NIRYVTPADIFPDFATFDVSFISL-------ISILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             CcccCCHhHcCCCceeeeEEEeeh-------HhHHHHHHHHhCc-CeEEEE
Confidence            555332111   222457666642       2357788899999 877764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.86  E-value=1.7e-08  Score=90.40  Aligned_cols=149  Identities=17%  Similarity=0.225  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCccc--CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH-------hC
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGE--TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAA-------TG   78 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~--~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~-------~~   78 (268)
                      ++++.++|...+.....-      .....|.  +....+..+++.+...++.+|||-.||+|+++..+...       ..
T Consensus         3 ~d~~g~~yE~~l~~~~~~------~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~   76 (311)
T PF02384_consen    3 RDILGDLYEYFLKKFAKE------SRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIK   76 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHC------TTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHH------hccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccc
Confidence            578888898865432100      1111111  22334455666778888999999999999999887763       24


Q ss_pred             CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCc------------
Q psy17227         79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP------------  146 (268)
Q Consensus        79 ~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~------------  146 (268)
                      ...++|+|+++.+..+++++-.+      .+....+..+.++|....+.......+|+|++|..+-..            
T Consensus        77 ~~~i~G~ei~~~~~~la~~nl~l------~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~  150 (311)
T PF02384_consen   77 EINIYGIEIDPEAVALAKLNLLL------HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDER  150 (311)
T ss_dssp             CEEEEEEES-HHHHHHHHHHHHH------TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred             cceeEeecCcHHHHHHHHhhhhh------hccccccccccccccccccccccccccccccCCCCcccccccccccccccc
Confidence            55699999999877777643322      222233567999998765533223467889888542111            


Q ss_pred             ---------CH-HHHHHHHHhcCCCCcEEEEe
Q psy17227        147 ---------TV-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       147 ---------~~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                               .. ...+..+.+.||+||++++.
T Consensus       151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAII  182 (311)
T ss_dssp             CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence                     01 12457788999999997654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02476 O-methyltransferase

Probab=98.86  E-value=2.5e-08  Score=87.53  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-c
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-H  127 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~  127 (268)
                      +...+..+|||||||+|..++.+|...+ ..+++++|.++....+|+  ++++    ..|.. ++++++.||+.+ ++ +
T Consensus       114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar--~n~~----~aGl~-~~I~li~GdA~e~L~~l  186 (278)
T PLN02476        114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK--RYYE----LAGVS-HKVNVKHGLAAESLKSM  186 (278)
T ss_pred             HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CcEEEEEcCHHHHHHHH
Confidence            3556678999999999999999988654 336999999997554443  4444    35654 589999999976 33 1


Q ss_pred             c-cc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 R-EK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~-~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . .. ...+|+||+.+.  .......+..+.+.|+|||.+++-
T Consensus       187 ~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        187 IQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            1 11 124678998743  334566778888999999999985

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.84  E-value=2.1e-08  Score=93.94  Aligned_cols=112  Identities=18%  Similarity=0.229  Sum_probs=72.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+++.++.+|||+|||+|.+++.+|+..  .+|+|+|+++.++..++  ++++    ..+  ..+++|+++|+.+
T Consensus       282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~--~n~~----~~~--~~nv~~~~~d~~~  351 (431)
T TIGR00479       282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQ--QNAE----LNG--IANVEFLAGTLET  351 (431)
T ss_pred             HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHH--HHHH----HhC--CCceEEEeCCHHH
Confidence            345666677888999999999999999988753  35999999998655544  4443    233  2489999999976


Q ss_pred             C-c-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E-E-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . + +......+|+|+++..-.. -....+..+ ..++|++.++++
T Consensus       352 ~l~~~~~~~~~~D~vi~dPPr~G-~~~~~l~~l-~~l~~~~ivyvs  395 (431)
T TIGR00479       352 VLPKQPWAGQIPDVLLLDPPRKG-CAAEVLRTI-IELKPERIVYVS  395 (431)
T ss_pred             HHHHHHhcCCCCCEEEECcCCCC-CCHHHHHHH-HhcCCCEEEEEc
Confidence            3 2 1111113577877543211 023334443 348898877664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.84  E-value=3.2e-08  Score=84.52  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKITQ  133 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~d  133 (268)
                      ...+||||||.|.++..+|+..+..-++|||+...  .++++.+.+.    +.+.  .|+.++++|+..+-  +.++ ..
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~--~v~~~l~k~~----~~~l--~Nlri~~~DA~~~l~~~~~~-~s  119 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP--GVAKALKKIK----ELGL--KNLRLLCGDAVEVLDYLIPD-GS  119 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH--HHHHHHHHHH----HcCC--CcEEEEcCCHHHHHHhcCCC-CC
Confidence            35799999999999999999998877999999986  4555444444    3343  39999999998743  1111 13


Q ss_pred             eEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .|-|+++-.--|+..         ...+..+.++|||||.|.+.
T Consensus       120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            455665422122321         22467777999999999865

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.84  E-value=1.2e-08  Score=86.02  Aligned_cols=107  Identities=19%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-ccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HRE  129 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~  129 (268)
                      .....+||+||||+|.-++.+|...+. .+++.+|+++....+|  +++++    ..|.. .+|+++.||+.+ ++ +..
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A--~~~~~----~ag~~-~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA--RENFR----KAGLD-DRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH--HHHHH----HTTGG-GGEEEEES-HHHHHHHHHH
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH--HHHHH----hcCCC-CcEEEEEeccHhhHHHHHh
Confidence            345578999999999999999987653 4799999999744443  34444    35553 589999999976 23 211


Q ss_pred             c--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 K--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ...+|+||+.+.  -.+....+..+.+.|+|||.+++-
T Consensus       116 ~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  116 DGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             TTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCceeEEEEccc--ccchhhHHHHHhhhccCCeEEEEc
Confidence            1  135889999854  234566788888999999999995

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.83  E-value=3e-08  Score=83.94  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=79.7

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCCccc
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTEEHR  128 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l~~~  128 (268)
                      +......+||+||.+.|.-++.+|...+ ..+++.||+++++..+|+  ++++    +.|.. ++++++. ||..+.--.
T Consensus        55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~--~n~~----~ag~~-~~i~~~~~gdal~~l~~  127 (219)
T COG4122          55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR--ENLA----EAGVD-DRIELLLGGDALDVLSR  127 (219)
T ss_pred             HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH--HHHH----HcCCc-ceEEEEecCcHHHHHHh
Confidence            3556778999999999999999999877 557999999998655554  4444    35553 4688888 587653211


Q ss_pred             ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .....+|+||+.+-  ..+....+..+.+.|+|||.+++-
T Consensus       128 ~~~~~fDliFIDad--K~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         128 LLDGSFDLVFIDAD--KADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             ccCCCccEEEEeCC--hhhCHHHHHHHHHHhCCCcEEEEe
Confidence            11235688999733  344567788888999999999985

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.80  E-value=1.8e-07  Score=77.39  Aligned_cols=123  Identities=16%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcE---------EEEEeCCCChhHHHHHHHHHHHHHHH
Q psy17227         37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI---------CWGVEKADLPAKYAEMHTVFKRWMQW  107 (268)
Q Consensus        37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~---------v~GiD~s~~~~~~a~~~~~~~~~~~~  107 (268)
                      +++.+.....++...++++++.|||--||+|.+.+++|.......         ++|.|+++.++..++  ++++.    
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~--~N~~~----   83 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR--ENLKA----   83 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH--HHHHH----
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH--HHHHh----
Confidence            335555666788888999999999999999999999887654443         789999998555444  44442    


Q ss_pred             hccccccEEEEEcCCCCCcccccccceEEEEEecccc---C--cCHH----HHHHHHHhcCCCCcEEEEe
Q psy17227        108 YGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAF---G--PTVD----HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       108 ~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~---~--~~~~----~~l~e~~r~LkpGG~~i~~  168 (268)
                      .|. ...+.+.++|+.++++.+.  .+|+|++|..+-   .  .+..    ..+.++.++|++...++++
T Consensus        84 ag~-~~~i~~~~~D~~~l~~~~~--~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   84 AGV-EDYIDFIQWDARELPLPDG--SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             TT--CGGEEEEE--GGGGGGTTS--BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             ccc-CCceEEEecchhhcccccC--CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            343 2479999999999995444  456788886531   1  1112    2246666889995555554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.80  E-value=3.5e-08  Score=90.72  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ..++..++.+|||+|||+|.+++.+|.. + .+|+|||+++.++..++  ++++    ..+.  .+++|+++|+.++...
T Consensus       227 ~~l~~~~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~--~N~~----~~~~--~~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       227 QWVREIPVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQ--QSAQ----MLGL--DNLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHhcCCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEECCHHHHHHh
Confidence            3344456789999999999999988853 4 45999999998655544  4443    2232  3899999999764311


Q ss_pred             ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ....+|+|+++... . .....+.+....++|++.++++
T Consensus       297 -~~~~~D~vi~DPPr-~-G~~~~~l~~l~~~~p~~ivyvs  333 (374)
T TIGR02085       297 -QMSAPELVLVNPPR-R-GIGKELCDYLSQMAPKFILYSS  333 (374)
T ss_pred             -cCCCCCEEEECCCC-C-CCcHHHHHHHHhcCCCeEEEEE
Confidence             11236788887542 1 2222333333458999888875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.75  E-value=5.8e-08  Score=89.33  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             HHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+++.+... ++.+|||++||+|..++.+|...+..+|+++|+++.++..++  ++++    .++.  .++++.++|+.+
T Consensus        47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~--~N~~----~N~~--~~~~v~~~Da~~  118 (382)
T PRK04338         47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK--KNLE----LNGL--ENEKVFNKDANA  118 (382)
T ss_pred             HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC--CceEEEhhhHHH
Confidence            344444332 457899999999999999998877667999999998666554  3333    2232  367899999976


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +....  ..+|+|.++.+   ......+....+.+++||.+.++
T Consensus       119 ~l~~~--~~fD~V~lDP~---Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        119 LLHEE--RKFDVVDIDPF---GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHhhc--CCCCEEEECCC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence            43211  24678888754   33456677778889999999987

>KOG1331|consensus

Probab=98.74  E-value=1.4e-08  Score=88.04  Aligned_cols=130  Identities=19%  Similarity=0.240  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEE
Q psy17227          6 LLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGV   85 (268)
Q Consensus         6 ~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~Gi   85 (268)
                      +=+..++.||+.+.++         |+...+  ..+..+..++....  .|..++|+|||.|..+..   ..++. ++|.
T Consensus         9 leqeyVh~IYd~ia~~---------fs~tr~--~~Wp~v~qfl~~~~--~gsv~~d~gCGngky~~~---~p~~~-~ig~   71 (293)
T KOG1331|consen    9 LEQEYVHSIYDKIATH---------FSATRA--APWPMVRQFLDSQP--TGSVGLDVGCGNGKYLGV---NPLCL-IIGC   71 (293)
T ss_pred             HHHHHhHHHHHHhhhh---------cccccc--CccHHHHHHHhccC--CcceeeecccCCcccCcC---CCcce-eeec
Confidence            3356688899998854         333222  23455667766654  488899999999998742   23454 8999


Q ss_pred             eCCCChhHHHHHHHHHHHHHHHhccccccE-EEEEcCCCCCcccccccceEEEEEeccccCcC---HHHHHHHHHhcCCC
Q psy17227         86 EKADLPAKYAEMHTVFKRWMQWYGKRHGEF-RLVKGDFLTEEHREKITQASIVFVNNFAFGPT---VDHALKERFQDLKD  161 (268)
Q Consensus        86 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~---~~~~l~e~~r~Lkp  161 (268)
                      |++...+..++               ..+. ....+|+.++|+.+.++|+ ++.+..++|...   ...+++|+.|+|+|
T Consensus        72 D~c~~l~~~ak---------------~~~~~~~~~ad~l~~p~~~~s~d~-~lsiavihhlsT~~RR~~~l~e~~r~lrp  135 (293)
T KOG1331|consen   72 DLCTGLLGGAK---------------RSGGDNVCRADALKLPFREESFDA-ALSIAVIHHLSTRERRERALEELLRVLRP  135 (293)
T ss_pred             chhhhhccccc---------------cCCCceeehhhhhcCCCCCCcccc-chhhhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence            99976333332               1233 6888999999999888877 555554545432   45678999999999


Q ss_pred             CcEEEEe
Q psy17227        162 GARIVSS  168 (268)
Q Consensus       162 GG~~i~~  168 (268)
                      ||...++
T Consensus       136 gg~~lvy  142 (293)
T KOG1331|consen  136 GGNALVY  142 (293)
T ss_pred             CCceEEE
Confidence            9997665

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.72  E-value=5e-08  Score=80.91  Aligned_cols=123  Identities=19%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             cCcHHHHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         38 ETSFDLISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      ++....-+.+++.++.  -+|.+|||+-||+|.+++.++. .|+.+|+.||.++.+..+  .+++++.    .+.. .++
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~--i~~N~~~----l~~~-~~~   94 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKI--IKKNLEK----LGLE-DKI   94 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHH--HHHHHHH----HT-G-GGE
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHH--HHHHHHH----hCCC-cce
Confidence            3444444556666654  4789999999999999998654 688889999999863333  4455443    3332 369


Q ss_pred             EEEEcCCCC-Cc-ccccccceEEEEEeccccCcCH-HHHHHHHH--hcCCCCcEEEEe
Q psy17227        116 RLVKGDFLT-EE-HREKITQASIVFVNNFAFGPTV-DHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~-l~-~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      +++++|+.. ++ .......+|+||+...+..... ...+..+.  ..|+++|.+++-
T Consensus        95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E  152 (183)
T PF03602_consen   95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE  152 (183)
T ss_dssp             EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred             eeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            999999754 32 1112346899999877665553 66777776  689999999984

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.71  E-value=1.4e-07  Score=73.85  Aligned_cols=101  Identities=10%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+.+.+...++.+|||||||+|. ++..+++ .|+. |+|+|+++.++..      +++         ..++++++|+++
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~-ViaIDi~~~aV~~------a~~---------~~~~~v~dDlf~   69 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFD-VIVIDINEKAVEK------AKK---------LGLNAFVDDLFN   69 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCE-EEEEECCHHHHHH------HHH---------hCCeEEECcCCC
Confidence            35555656677899999999996 8877764 5776 9999999963222      221         247899999998


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++. -..++|+|.+-  --.+++...+.++.+.+.  .-+++.
T Consensus        70 p~~~-~y~~a~liysi--rpp~el~~~~~~la~~~~--~~~~i~  108 (134)
T PRK04148         70 PNLE-IYKNAKLIYSI--RPPRDLQPFILELAKKIN--VPLIIK  108 (134)
T ss_pred             CCHH-HHhcCCEEEEe--CCCHHHHHHHHHHHHHcC--CCEEEE
Confidence            6642 22356676652  345677777777776544  555554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.71  E-value=1.6e-07  Score=78.49  Aligned_cols=125  Identities=15%  Similarity=0.110  Sum_probs=77.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++..=...+.+||+||||||..+.++|+.++.-.-.--|.++.      .+..++.++.+.+..+- ..-+.-|+
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~------~~~sI~a~~~~~~~~Nv-~~P~~lDv   85 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN------LRPSIRAWIAEAGLPNV-RPPLALDV   85 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH------HHhhHHHHHHhcCCccc-CCCeEeec
Confidence            344555554222333599999999999999999998766677777765      22233344444443211 12334466


Q ss_pred             CCCc--ccc----cccceEEEEEeccccCc---CHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        123 LTEE--HRE----KITQASIVFVNNFAFGP---TVDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       123 ~~l~--~~~----~~~d~dvv~~~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      .+.+  ...    ....+|+|++-+++|..   .....|+...+.|+|||.++++-||..+
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~  146 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD  146 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence            5532  110    11245677776665543   3555688888999999999999777543

The function of this family is unknown.

>KOG2904|consensus

Probab=98.67  E-value=2.9e-07  Score=79.34  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CcHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         39 TSFDLISRMIDQIN---ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        39 ~~~~~~~~ll~~l~---~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      .++..+..+++.++   ...+..+||+|||+|.++..++...+...|++||.|+.++.+|.  +++.+    .++ .+.+
T Consensus       129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~--eN~qr----~~l-~g~i  201 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK--ENAQR----LKL-SGRI  201 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH--HHHHH----Hhh-cCce
Confidence            34455555555543   44566899999999999999988877667999999998666654  55543    233 3577


Q ss_pred             EEEEcCCCC---CcccccccceEEEEEecc
Q psy17227        116 RLVKGDFLT---EEHREKITQASIVFVNNF  142 (268)
Q Consensus       116 ~~~~gD~~~---l~~~~~~~d~dvv~~~~~  142 (268)
                      .+++-+++.   .|.+......|++++|..
T Consensus       202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP  231 (328)
T KOG2904|consen  202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP  231 (328)
T ss_pred             EEEecccccccccccccccCceeEEecCCC
Confidence            777554442   222222234677777754

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.64  E-value=6.5e-08  Score=81.55  Aligned_cols=113  Identities=13%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-  125 (268)
                      -++....+.|.+|||...|-|..++.+++ .|+..|+.+|.+|..+.+|..+...+      ++...+++++.||+.+. 
T Consensus       126 Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr------~l~~~~i~iilGD~~e~V  198 (287)
T COG2521         126 KVELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSR------ELFEIAIKIILGDAYEVV  198 (287)
T ss_pred             hhheeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCc------cccccccEEecccHHHHH
Confidence            34555677899999999999999998665 58866999999999888877544322      12234799999999874 


Q ss_pred             -cccccccceEEEEEecc--ccCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 -EHREKITQASIVFVNNF--AFGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 -~~~~~~~d~dvv~~~~~--~~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .|+|.+|  |+|+-...  .+..+  -...++|++|+|||||+++-+
T Consensus       199 ~~~~D~sf--DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY  244 (287)
T COG2521         199 KDFDDESF--DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY  244 (287)
T ss_pred             hcCCcccc--ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence             3556544  55664432  12222  245679999999999999975

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.62  E-value=1.6e-07  Score=89.62  Aligned_cols=104  Identities=17%  Similarity=0.105  Sum_probs=71.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~  132 (268)
                      .+..+||||||.|.++..+|...+...++|||++..  .++++...+.    ..+  ..|+.++++|+..+.  ++++  
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~--~~~~~~~~~~----~~~--l~N~~~~~~~~~~~~~~~~~~--  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN--GVANVLKLAG----EQN--ITNFLLFPNNLDLILNDLPNN--  416 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHH----HcC--CCeEEEEcCCHHHHHHhcCcc--
Confidence            466899999999999999999988777999999975  4444333322    233  358999999876443  3333  


Q ss_pred             ceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|.|+++-.--||+.         ...+..+.++|||||.+.+.
T Consensus       417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            3456666532222221         23467788999999998764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.3e-07  Score=80.38  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+.++++.+++.++++||+||+|.|.++..+++. +.. |++||+++.++..  .++...        ..++++++.+
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~-v~aiEiD~~l~~~--L~~~~~--------~~~n~~vi~~   83 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AAR-VTAIEIDRRLAEV--LKERFA--------PYDNLTVING   83 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCe-EEEEEeCHHHHHH--HHHhcc--------cccceEEEeC
Confidence            456788999999999999999999999999999886 343 9999999962222  222211        2469999999


Q ss_pred             CCCCCcccccccceEEEEEecccc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAF  144 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~  144 (268)
                      |+.+.+++... ..+.|++|..++
T Consensus        84 DaLk~d~~~l~-~~~~vVaNlPY~  106 (259)
T COG0030          84 DALKFDFPSLA-QPYKVVANLPYN  106 (259)
T ss_pred             chhcCcchhhc-CCCEEEEcCCCc
Confidence            99998876432 234666665543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.61  E-value=1.9e-07  Score=78.30  Aligned_cols=105  Identities=20%  Similarity=0.276  Sum_probs=65.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ++.+.  +++|.+|||+.||.|.+++.+|+..+...|+++|++|.+...  ++++++    ..+. ..++..+++|+.++
T Consensus        94 Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~--L~~Ni~----lNkv-~~~i~~~~~D~~~~  164 (200)
T PF02475_consen   94 RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY--LKENIR----LNKV-ENRIEVINGDAREF  164 (200)
T ss_dssp             HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH--HHHHHH----HTT--TTTEEEEES-GGG-
T ss_pred             HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH--HHHHHH----HcCC-CCeEEEEcCCHHHh
Confidence            45444  688999999999999999999986666679999999974444  334443    3344 35799999999887


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARI  165 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~  165 (268)
                      .. .  ..+|-|+++..   +.-...+....+.+|+||.+
T Consensus       165 ~~-~--~~~drvim~lp---~~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  165 LP-E--GKFDRVIMNLP---ESSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             ---T--T-EEEEEE--T---SSGGGGHHHHHHHEEEEEEE
T ss_pred             cC-c--cccCEEEECCh---HHHHHHHHHHHHHhcCCcEE
Confidence            64 2  24577777644   23345566677888888875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.59  E-value=4.1e-07  Score=78.82  Aligned_cols=108  Identities=15%  Similarity=0.062  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc-c
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH-R  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~-~  128 (268)
                      ...+..+||+||+++|.-++.+|...+ ..+++.+|.++....+|  +++++    ..|.. .+|+++.||+.+ ++- .
T Consensus        76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~A--r~~~~----~ag~~-~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG--LPVIQ----KAGVA-HKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH--HHHHH----HCCCC-CceEEEeccHHHHHHHHH
Confidence            444567899999999999999987654 34699999998744443  34443    35553 689999999876 331 1


Q ss_pred             c-c--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 E-K--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~-~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . .  ...+|+||+.+.  -......+..+.+.|+|||.|++-
T Consensus       149 ~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             hccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            1 0  135788998744  233455677778999999999884

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.57  E-value=2e-07  Score=85.51  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~  132 (268)
                      .|++|||+=|=||++++++|. .|+.+||+||+|..++..|+  ++++    .+|....+++|+++|+.++-  ....-.
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~--~N~~----LNg~~~~~~~~i~~Dvf~~l~~~~~~g~  289 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWAR--ENAE----LNGLDGDRHRFIVGDVFKWLRKAERRGE  289 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHH--HHHH----hcCCCccceeeehhhHHHHHHHHHhcCC
Confidence            399999999999999998665 68877999999998555544  3333    45655567999999998742  111123


Q ss_pred             ceEEEEEeccccCcC----------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPT----------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~----------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++...-|...          ....+..+.+.|+|||.++++
T Consensus       290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~  335 (393)
T COG1092         290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS  335 (393)
T ss_pred             cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            578999876544322          222345566899999999976

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.57  E-value=2e-07  Score=82.70  Aligned_cols=88  Identities=20%  Similarity=0.332  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+.++++.+.+.++.++||.+||.|+.+..+++..+ ..+|+|+|.++.++..++  +.+.    .    ..+++++++|
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak--~~L~----~----~~ri~~i~~~   76 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK--DRLK----P----FGRFTLVHGN   76 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH--Hhhc----c----CCcEEEEeCC
Confidence            456788889899999999999999999999998875 446999999998555543  2221    1    2489999999


Q ss_pred             CCCCcc--cccccceEEEEEe
Q psy17227        122 FLTEEH--REKITQASIVFVN  140 (268)
Q Consensus       122 ~~~l~~--~~~~~d~dvv~~~  140 (268)
                      +.++..  +++...+|.|+++
T Consensus        77 f~~l~~~l~~~~~~vDgIl~D   97 (296)
T PRK00050         77 FSNLKEVLAEGLGKVDGILLD   97 (296)
T ss_pred             HHHHHHHHHcCCCccCEEEEC
Confidence            998752  2221246677764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.57  E-value=4.7e-07  Score=75.06  Aligned_cols=97  Identities=23%  Similarity=0.206  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      +++|||+|.|.+++.+|-..+..+++-+|.+..  +.+=.    +..+...|+  .|++++++.+++ +  .....+|+|
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL----~~~~~~L~L--~nv~v~~~R~E~-~--~~~~~fd~v  119 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFL----KEVVRELGL--SNVEVINGRAEE-P--EYRESFDVV  119 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHH----HHHHHHHT---SSEEEEES-HHH-T--TTTT-EEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHH----HHHHHHhCC--CCEEEEEeeecc-c--ccCCCccEE
Confidence            899999999999999999988888999999974  22212    222334555  489999999988 2  122467889


Q ss_pred             EEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        138 FVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++-++   ..+...+.-+...||+||++++.
T Consensus       120 ~aRAv---~~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  120 TARAV---APLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             EEESS---SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             Eeehh---cCHHHHHHHHHHhcCCCCEEEEE
Confidence            98777   45566667777899999999986

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.56  E-value=6.7e-08  Score=79.76  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             HHHHHHHHcC-CCCC--CEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQIN-ATPD--DVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~-~~~~--~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .+.++.+..+ +.++  .+||||||++|+.+..++... ...+|+|+|+.+.                   ....++.++
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------------------~~~~~~~~i   68 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------------------DPLQNVSFI   68 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------------------GS-TTEEBT
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-------------------ccccceeee
Confidence            3456777777 5554  899999999999998777654 2446999999984                   012467788


Q ss_pred             EcCCCCCc----cccc----ccceEEEEEecccc-----CcCH-------HHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEE----HREK----ITQASIVFVNNFAF-----GPTV-------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~----~~~~----~~d~dvv~~~~~~~-----~~~~-------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+..    +.+.    ...+|+|++.....     ..+.       ...+.-+.+.|||||.+++-
T Consensus        69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            88886532    1111    13578898876211     1111       12233334679999998874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.54  E-value=1.4e-06  Score=75.99  Aligned_cols=114  Identities=14%  Similarity=0.197  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-cccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-HREK  130 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~~~~  130 (268)
                      ...-+||||.||.|+..+.+....+.  ..|.-.|.|+.  .++..++.    +++.|+. .-++|.++|+.+.. +..-
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~--Nv~~g~~l----i~~~gL~-~i~~f~~~dAfd~~~l~~l  206 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPI--NVEKGRAL----IAERGLE-DIARFEQGDAFDRDSLAAL  206 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHH--HHHHHHHH----HHHcCCc-cceEEEecCCCCHhHhhcc
Confidence            35568999999999999998887775  57899999985  33333333    3345653 34599999999843 2211


Q ss_pred             ccceEEEEEecc--ccCcC--HHHHHHHHHhcCCCCcEEEEe-CCCCCC
Q psy17227        131 ITQASIVFVNNF--AFGPT--VDHALKERFQDLKDGARIVSS-KSFCPL  174 (268)
Q Consensus       131 ~~d~dvv~~~~~--~~~~~--~~~~l~e~~r~LkpGG~~i~~-~~~~~~  174 (268)
                      .+..+++++..+  +|.++  ....+.-+.+.+.|||.+|.| -||.|+
T Consensus       207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            223355555544  45443  445689999999999999977 467665

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3420|consensus

Probab=98.54  E-value=1e-07  Score=74.74  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +=+..+.-.|++++|||||+|-+.+.. ..++...|+|+||+|++..+..  .++.+    .   .-++.+.|+|+.++.
T Consensus        40 Ih~TygdiEgkkl~DLgcgcGmLs~a~-sm~~~e~vlGfDIdpeALEIf~--rNaeE----f---EvqidlLqcdildle  109 (185)
T KOG3420|consen   40 IHNTYGDIEGKKLKDLGCGCGMLSIAF-SMPKNESVLGFDIDPEALEIFT--RNAEE----F---EVQIDLLQCDILDLE  109 (185)
T ss_pred             HHhhhccccCcchhhhcCchhhhHHHh-hcCCCceEEeeecCHHHHHHHh--hchHH----h---hhhhheeeeeccchh
Confidence            334556668899999999999999654 3467777999999998555543  33332    2   136799999999987


Q ss_pred             ccccccceEEEEEecc
Q psy17227        127 HREKITQASIVFVNNF  142 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~  142 (268)
                      +....  +|..++|..
T Consensus       110 ~~~g~--fDtaviNpp  123 (185)
T KOG3420|consen  110 LKGGI--FDTAVINPP  123 (185)
T ss_pred             ccCCe--EeeEEecCC
Confidence            65543  455666644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.51  E-value=1.5e-06  Score=81.99  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=77.5

Q ss_pred             HHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         48 IDQI--NATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        48 l~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +..+  +.++|++|||++||.|+=+.++|...+. ..+++.|+++.  ++..+++++++    .|.  .++.+.+.|..+
T Consensus       104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl~r----~G~--~nv~v~~~D~~~  175 (470)
T PRK11933        104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANISR----CGV--SNVALTHFDGRV  175 (470)
T ss_pred             HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHH----cCC--CeEEEEeCchhh
Confidence            3445  7789999999999999999999987643 36999999986  45445566554    453  479999999887


Q ss_pred             Ccc-cccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEH-REKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~-~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++- ...  .+|.|++.+.|-       .|+.                .+.|...++.|||||++|-+
T Consensus       176 ~~~~~~~--~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS  241 (470)
T PRK11933        176 FGAALPE--TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS  241 (470)
T ss_pred             hhhhchh--hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            541 112  356777655432       1211                23456677899999999743

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.49  E-value=1.1e-06  Score=80.37  Aligned_cols=70  Identities=11%  Similarity=0.068  Sum_probs=49.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++..+ .+|||+|||+|.+++.+++..  .+|+|||+++.++..++  ++++    ..+.  .+++|+++|+.+
T Consensus       188 ~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~--~n~~----~~~~--~~v~~~~~d~~~  256 (353)
T TIGR02143       188 EWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQ--YNIA----ANNI--DNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEEcCHHH
Confidence            34445554333 469999999999999888764  35999999998655544  4443    2332  379999999976


Q ss_pred             C
Q psy17227        125 E  125 (268)
Q Consensus       125 l  125 (268)
                      +
T Consensus       257 ~  257 (353)
T TIGR02143       257 F  257 (353)
T ss_pred             H
Confidence            3

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2940|consensus

Probab=98.48  E-value=1.7e-07  Score=78.92  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             HHHHHc-CC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQI-NA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l-~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +++.++ ++ +...+++|||||.|.+.+++..+ +..+++-+|.|-.|++-++      . ++.   ..-......+|-+
T Consensus        61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~------~-~qd---p~i~~~~~v~DEE  129 (325)
T KOG2940|consen   61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCR------D-AQD---PSIETSYFVGDEE  129 (325)
T ss_pred             HHHHHHHHHhhhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhh------c-cCC---CceEEEEEecchh
Confidence            455444 33 34567999999999999988665 5777999999987444332      1 100   1125678889999


Q ss_pred             CCcccccccceEEEEEecccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++|.++++|  ++++...+| ..++...+..+...|||.|.|+.+
T Consensus       130 ~Ldf~ens~D--LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  130 FLDFKENSVD--LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             cccccccchh--hhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            9999887654  555544444 467889999999999999999975

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.47  E-value=1.7e-06  Score=77.63  Aligned_cols=86  Identities=14%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEEEEE-cCCCCCccc--cc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFRLVK-GDFLTEEHR--EK  130 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~-gD~~~l~~~--~~  130 (268)
                      ++.++||||||+|.+...++.+....+++|+|+++.++..|+  ++++.    . +. ..++++++ .|..++...  ..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~--~Nv~~----Np~l-~~~I~~~~~~~~~~i~~~i~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ--AIISA----NPGL-NGAIRLRLQKDSKAIFKGIIHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH--HHHHh----ccCC-cCcEEEEEccchhhhhhccccc
Confidence            567899999999988877776654445999999998666554  44432    2 22 24687764 343332210  11


Q ss_pred             ccceEEEEEeccccCcC
Q psy17227        131 ITQASIVFVNNFAFGPT  147 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~  147 (268)
                      ...+|+|++|..+|...
T Consensus       187 ~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        187 NERFDATLCNPPFHASA  203 (321)
T ss_pred             CCceEEEEeCCCCcCcc
Confidence            23578999998877543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.46  E-value=1.6e-06  Score=71.19  Aligned_cols=110  Identities=11%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc-cccccEEEEEcCCCCCcccc-
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG-KRHGEFRLVKGDFLTEEHRE-  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~i~~~~gD~~~l~~~~-  129 (268)
                      ...++.+||+||||+|-.++.+|+..+...|+..|.++ .+..  ++.+++.    .+ ....++++...|-.+....+ 
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~--l~~Ni~~----N~~~~~~~v~v~~L~Wg~~~~~~~  114 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLEL--LRRNIEL----NGSLLDGRVSVRPLDWGDELDSDL  114 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHH--HHHHHHT----T--------EEEE--TTS-HHHHH
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHH--HHHHHHh----ccccccccccCcEEEecCcccccc
Confidence            35678899999999999999888865666799999998 3333  3344332    11 11347888887764411011 


Q ss_pred             -cccceEEEEEeccccCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227        130 -KITQASIVFVNNFAFGPTVDHA-LKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 -~~~d~dvv~~~~~~~~~~~~~~-l~e~~r~LkpGG~~i~~  168 (268)
                       ....+|+|+...+++.++.... +.-+.+.|+|+|.+++.
T Consensus       115 ~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  115 LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence             1124678887777666665555 45556789998887665

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.45  E-value=2e-06  Score=77.23  Aligned_cols=150  Identities=13%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC---
Q psy17227          2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG---   78 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~---   78 (268)
                      ||++|-.+-=++.|++|+    .+..|.+...+  -++.......++..+  .++.+++|+|||.|.=+..+.....   
T Consensus        31 p~k~~YD~~Gs~LFe~It----~lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~  102 (319)
T TIGR03439        31 PTLLLYDDEGLKLFEEIT----YSPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQK  102 (319)
T ss_pred             ChHhhhcchHHHHHHHHH----cCCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcC
Confidence            555555555556666666    23344443321  112222333455554  5777899999999998777665442   


Q ss_pred             -CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE--EEcCCCCC----ccc--ccccceEEEEEeccc--cC-c
Q psy17227         79 -CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL--VKGDFLTE----EHR--EKITQASIVFVNNFA--FG-P  146 (268)
Q Consensus        79 -~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~--~~gD~~~l----~~~--~~~~d~dvv~~~~~~--~~-~  146 (268)
                       ....++||+|..+..  .+...+..      ...+.+++  ++||+.+.    +-+  ...... ++|..+.+  +. +
T Consensus       103 ~~~~Y~plDIS~~~L~--~a~~~L~~------~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~-~~flGSsiGNf~~~  173 (319)
T TIGR03439       103 KSVDYYALDVSRSELQ--RTLAELPL------GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTT-ILWLGSSIGNFSRP  173 (319)
T ss_pred             CCceEEEEECCHHHHH--HHHHhhhh------ccCCCeEEEEEEecHHHHHhhcccccccCCccE-EEEeCccccCCCHH
Confidence             224799999986333  22222220      12344544  99999763    211  111222 44554443  22 3


Q ss_pred             CHHHHHHHHHh-cCCCCcEEEEe
Q psy17227        147 TVDHALKERFQ-DLKDGARIVSS  168 (268)
Q Consensus       147 ~~~~~l~e~~r-~LkpGG~~i~~  168 (268)
                      +....|+++.+ .|+||+.+++.
T Consensus       174 ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       174 EAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEe
Confidence            34555788888 99999998875

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1.9e-06  Score=72.83  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=72.0

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      +.+++|||+|.|-+++.+|-.++..+++=||-...-+..      ++...++.++  .|++++++.++++.-....  +|
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~F------L~~~~~eL~L--~nv~i~~~RaE~~~~~~~~--~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAF------LREVKKELGL--ENVEIVHGRAEEFGQEKKQ--YD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHH------HHHHHHHhCC--CCeEEehhhHhhccccccc--Cc
Confidence            589999999999999999977777679999998752222      2222234454  5899999999987632221  78


Q ss_pred             EEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        136 IVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       136 vv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|++-++   .++...+.-+...+|+||.++..
T Consensus       138 ~vtsRAv---a~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         138 VVTSRAV---ASLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             EEEeehc---cchHHHHHHHHHhcccCCcchhh
Confidence            8988766   34455555556789999998754

>PLN02823 spermine synthase

Probab=98.43  E-value=1.1e-06  Score=79.58  Aligned_cols=109  Identities=11%  Similarity=0.074  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      ...+||.||+|.|..++.+++..+..+++.||+++.++.+++  +.+...  ..+...++++++.+|..+.- ......+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar--~~~~~~--~~~~~dprv~v~~~Da~~~L-~~~~~~y  177 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCR--KHLTVN--REAFCDKRLELIINDARAEL-EKRDEKF  177 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHH--Hhcccc--cccccCCceEEEEChhHHHH-hhCCCCc
Confidence            446899999999999998887656667999999998666655  332210  00123468999999998732 1122357


Q ss_pred             EEEEEecccc---CcC----HHHHHH-HHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAF---GPT----VDHALK-ERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~---~~~----~~~~l~-e~~r~LkpGG~~i~~  168 (268)
                      |+|++...-.   .+-    -...++ .+.+.|+|||.+++.
T Consensus       178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            8899874311   110    123455 678899999999864

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.41  E-value=1e-05  Score=66.76  Aligned_cols=125  Identities=22%  Similarity=0.202  Sum_probs=85.0

Q ss_pred             cccCcHHHHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         36 YGETSFDLISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        36 ~g~~~~~~~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      .-++....=..+.+.+..  -.|.+|||+=+|+|.+++.++. .|+.+++.||.+..+..+  .+++++    ..+. ..
T Consensus        22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~--l~~N~~----~l~~-~~   93 (187)
T COG0742          22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKI--LKENLK----ALGL-EG   93 (187)
T ss_pred             cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHH--HHHHHH----HhCC-cc
Confidence            334555555568888765  5889999999999999999665 588889999999864333  334443    3333 35


Q ss_pred             cEEEEEcCCCCC-cccccccceEEEEEeccccCcCH--HHHHHH--HHhcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTE-EHREKITQASIVFVNNFAFGPTV--DHALKE--RFQDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l-~~~~~~~d~dvv~~~~~~~~~~~--~~~l~e--~~r~LkpGG~~i~~  168 (268)
                      +++++..|+... +.......+|+||+...++..-.  ...+..  -...|+|||.+++-
T Consensus        94 ~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742          94 EARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             ceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            899999998843 11112224789999877663333  333333  34689999999984

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.40  E-value=6.3e-06  Score=81.74  Aligned_cols=123  Identities=14%  Similarity=0.079  Sum_probs=82.5

Q ss_pred             CcHHHHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHH------------hC---------------------------
Q psy17227         39 TSFDLISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAA------------TG---------------------------   78 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~------------~~---------------------------   78 (268)
                      +-+.....++...++ +++..++|.+||+|.+++.+|..            ++                           
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            444556678888888 67899999999999999998763            11                           


Q ss_pred             ---CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecccc---C--cCHHH
Q psy17227         79 ---CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAF---G--PTVDH  150 (268)
Q Consensus        79 ---~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~---~--~~~~~  150 (268)
                         ..+++|+|+++.++..|+  +++.    ..|.. ..++|.++|+.+++.+.....+|+|++|..+.   .  .+...
T Consensus       253 ~~~~~~i~G~Did~~av~~A~--~N~~----~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~  325 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAAR--KNAR----RAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIA  325 (702)
T ss_pred             cccCceEEEEECCHHHHHHHH--HHHH----HcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHH
Confidence               114899999998776665  3333    24543 46999999999987543222367888886542   1  12222


Q ss_pred             H---HHHHHhcCCCCcEEEEe
Q psy17227        151 A---LKERFQDLKDGARIVSS  168 (268)
Q Consensus       151 ~---l~e~~r~LkpGG~~i~~  168 (268)
                      .   +.+.++...||+++++.
T Consensus       326 lY~~lg~~lk~~~~g~~~~ll  346 (702)
T PRK11783        326 LYSQLGRRLKQQFGGWNAALF  346 (702)
T ss_pred             HHHHHHHHHHHhCCCCeEEEE
Confidence            3   34445555689887654

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.37  E-value=5.2e-06  Score=63.95  Aligned_cols=101  Identities=24%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             EEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC--CcccccccceE
Q psy17227         59 FVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT--EEHREKITQAS  135 (268)
Q Consensus        59 vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~--l~~~~~~~d~d  135 (268)
                      ++|+|||+|... .++...+. ..++|+|+++.+...+.  ....      ......+.+..+|...  +++... ..+|
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~d  121 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALAR--ARAE------GAGLGLVDFVVADALGGVLPFEDS-ASFD  121 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHH--hhhh------hcCCCceEEEEeccccCCCCCCCC-Ccee
Confidence            999999999976 33443332 24899999986444321  1110      0001117899999886  676542 1344


Q ss_pred             EEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        136 IVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       136 vv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++......+.......+.++.++|+|+|.+++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  155 (257)
T COG0500         122 LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSD  155 (257)
T ss_pred             EEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            5544444443347888999999999999998863

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.36  E-value=3.1e-06  Score=77.58  Aligned_cols=107  Identities=16%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-  125 (268)
                      +.+.+... +.+|||++||+|.+++.+++..  .+|+|||+|+.++..++  ++++    ..+.  .+++|+++|+.+. 
T Consensus       199 v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~--~N~~----~~~~--~~v~~~~~d~~~~l  267 (362)
T PRK05031        199 ALDATKGS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQ--YNIA----ANGI--DNVQIIRMSAEEFT  267 (362)
T ss_pred             HHHHhhcC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHH--HHHH----HhCC--CcEEEEECCHHHHH
Confidence            34444332 3579999999999999887753  46999999998655544  4443    2333  4899999999763 


Q ss_pred             c-ccc------------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E-HRE------------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~-~~~------------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + +..            ....+|+|+++..- ..-....+..+.   +|++.++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~---~~~~ivyvS  319 (362)
T PRK05031        268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ---AYERILYIS  319 (362)
T ss_pred             HHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH---ccCCEEEEE
Confidence            2 110            01135788886442 111223333333   367777764

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.34  E-value=6.5e-07  Score=72.50  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=47.6

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc-eE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ-AS  135 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d-~d  135 (268)
                      .+|+|+.||.|+-++.+|+.  +.+|++||+++.  +++.++.+++    -.|. ..+|+|++||+.++.-...... +|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~--~~~~a~hNa~----vYGv-~~~I~~i~gD~~~~~~~~~~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPE--RLECAKHNAE----VYGV-ADNIDFICGDFFELLKRLKSNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HH--HHHHHHHHHH----HTT--GGGEEEEES-HHHHGGGB------S
T ss_pred             CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHH--HHHHHHHHHH----HcCC-CCcEEEEeCCHHHHHhhcccccccc
Confidence            36999999999999999986  344999999986  4444445554    3454 3589999999987531111111 57


Q ss_pred             EEEEe
Q psy17227        136 IVFVN  140 (268)
Q Consensus       136 vv~~~  140 (268)
                      +||++
T Consensus        72 ~vFlS   76 (163)
T PF09445_consen   72 VVFLS   76 (163)
T ss_dssp             EEEE-
T ss_pred             EEEEC
Confidence            78865

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.32  E-value=7.6e-06  Score=69.04  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      +.+.+++|.+||-||..+|...-+++...+ ...|++||.|+.+  .......+++        -.||--+-+|+.... 
T Consensus        67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~--~rdL~~la~~--------R~NIiPIl~DAr~P~~  136 (229)
T PF01269_consen   67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS--MRDLLNLAKK--------RPNIIPILEDARHPEK  136 (229)
T ss_dssp             S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH--HHHHHHHHHH--------STTEEEEES-TTSGGG
T ss_pred             cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchh--HHHHHHHhcc--------CCceeeeeccCCChHH
Confidence            446788999999999999999999999887 4579999999852  1112222222        358999999998754 


Q ss_pred             ccccccceEEEEEeccccCcCHHH-HHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDH-ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~-~l~e~~r~LkpGG~~i~~  168 (268)
                      +..-...+|+|+....  .|+..+ +..++..-||+||.+++.
T Consensus       137 Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  137 YRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             GTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence            2222246899998744  344444 456666799999999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2915|consensus

Probab=98.31  E-value=8.3e-06  Score=70.41  Aligned_cols=115  Identities=20%  Similarity=0.247  Sum_probs=87.7

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..+..++.+|+++||.+||+-|.|+|.++..+|+..+ ..+++..|..+.  +..++++.++    +.+. .++++++.-
T Consensus        92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~--Ra~ka~eeFr----~hgi-~~~vt~~hr  164 (314)
T KOG2915|consen   92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET--RAEKALEEFR----EHGI-GDNVTVTHR  164 (314)
T ss_pred             ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH--HHHHHHHHHH----HhCC-CcceEEEEe
Confidence            3466789999999999999999999999999998863 336899999763  4444555555    3454 369999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCc-EEEE
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA-RIVS  167 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG-~~i~  167 (268)
                      |+...-|...+..+|+||..    .|.+..++-..+..||.+| ++++
T Consensus       165 DVc~~GF~~ks~~aDaVFLD----lPaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  165 DVCGSGFLIKSLKADAVFLD----LPAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             ecccCCccccccccceEEEc----CCChhhhhhhhHHHhhhcCceEEe
Confidence            99987766555567888864    4667778878888898866 5554

>KOG0820|consensus

Probab=98.31  E-value=4.1e-06  Score=72.32  Aligned_cols=87  Identities=24%  Similarity=0.432  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~  119 (268)
                      +..+..+++..++++++.||+||-|||+++..+... +.. |+++|+++.  +++...++.+      |. ..++.+++.
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kk-VvA~E~Dpr--mvael~krv~------gtp~~~kLqV~~  113 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKK-VVAVEIDPR--MVAELEKRVQ------GTPKSGKLQVLH  113 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCe-EEEEecCcH--HHHHHHHHhc------CCCccceeeEEe
Confidence            445678999999999999999999999999987764 454 999999997  3333222221      22 135899999


Q ss_pred             cCCCCCcccccccceEEEEEec
Q psy17227        120 GDFLTEEHREKITQASIVFVNN  141 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~  141 (268)
                      ||+.+.+++  .|  |++++|.
T Consensus       114 gD~lK~d~P--~f--d~cVsNl  131 (315)
T KOG0820|consen  114 GDFLKTDLP--RF--DGCVSNL  131 (315)
T ss_pred             cccccCCCc--cc--ceeeccC
Confidence            999987643  23  4555553

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=9.9e-06  Score=67.79  Aligned_cols=105  Identities=21%  Similarity=0.252  Sum_probs=72.0

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .++.++.+ ++++++|+||||-+|+-+..+++..+.. .|+|||+.|-       .            ..+++.++++|+
T Consensus        34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~------------~~~~V~~iq~d~   94 (205)
T COG0293          34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------K------------PIPGVIFLQGDI   94 (205)
T ss_pred             HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------c------------cCCCceEEeeec
Confidence            34555554 4678999999999999999888887653 5999999982       1            135799999999


Q ss_pred             CCCccccc----c--cceEEEEEecc-----ccCcCHHH-------HHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREK----I--TQASIVFVNNF-----AFGPTVDH-------ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~----~--~d~dvv~~~~~-----~~~~~~~~-------~l~e~~r~LkpGG~~i~~  168 (268)
                      ++-+..+.    .  ..+|+|.+.+.     .+..|...       ++.-+..+|+|||.|++-
T Consensus        95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K  158 (205)
T COG0293          95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK  158 (205)
T ss_pred             cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence            98653221    1  12588887643     22223222       123334799999999984

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.30  E-value=1.8e-06  Score=76.31  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+..+...  ..|.+|||+=|=||+++..++ ..|+.+|++||.|..++..++  +++.    .+|....+++|+++|+.
T Consensus       114 nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~--~N~~----lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  114 NRKWVRKY--AKGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAK--ENAA----LNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             HHHHHHHH--CTTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHH--HHHH----HTT-CCTCEEEEES-HH
T ss_pred             hHHHHHHH--cCCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHH--HHHH----HcCCCccceEEEecCHH
Confidence            33444443  468899999999999999755 478878999999987444433  4433    34554568999999997


Q ss_pred             CC-cccccccceEEEEEeccccCc-------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TE-EHREKITQASIVFVNNFAFGP-------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l-~~~~~~~d~dvv~~~~~~~~~-------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +. .--.....+|+|++...-|..       +....+..+.+.|+|||.++++
T Consensus       185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            63 211112368899987654322       2233455666899999998865

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.28  E-value=8.5e-06  Score=65.55  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .-..++++...+...|.-||++|-|||-++..+..+. ....++.||.|++   ....   +.+       ..+.++++.
T Consensus        34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d---F~~~---L~~-------~~p~~~ii~  100 (194)
T COG3963          34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD---FVCH---LNQ-------LYPGVNIIN  100 (194)
T ss_pred             HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH---HHHH---HHH-------hCCCccccc
Confidence            3445678888899999999999999999999887642 2336899999996   3221   111       246788999


Q ss_pred             cCCCCCc--cccc-ccceEEEEEeccc--cCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEE--HREK-ITQASIVFVNNFA--FGPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~--~~~~-~~d~dvv~~~~~~--~~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ||+.++.  ..+. ..-+|+|++...+  +... ....++.....|.+||.++..
T Consensus       101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf  155 (194)
T COG3963         101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF  155 (194)
T ss_pred             cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            9999986  2211 1234666665432  3333 334467777889999999853

>KOG3178|consensus

Probab=98.28  E-value=5.9e-06  Score=73.90  Aligned_cols=100  Identities=17%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      -...+|+|.|.|+.+..+...++.  |-|++.+..  .+-++...         .. +.|+.+-||+.+-     ....|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp--~v~~~a~~---------~~-~gV~~v~gdmfq~-----~P~~d  238 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLP--FVLAAAPY---------LA-PGVEHVAGDMFQD-----TPKGD  238 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHH--HHHhhhhh---------hc-CCcceeccccccc-----CCCcC
Confidence            478999999999999999887666  788888863  22111111         11 3589999999862     33557


Q ss_pred             EEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        136 IVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       136 vv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      +|++-=+ .||+|  ..+.|++++..|+|||.+++.+...|.
T Consensus       239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  239 AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence            8887644 45654  677899999999999999998887765

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.27  E-value=9.8e-07  Score=72.16  Aligned_cols=96  Identities=23%  Similarity=0.312  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      +++.|+|.|+|-++.-+|..  +.+|++|+.+|....+|+  +++.    -.|  ..+++++.||+.+..|.    .+|+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~--eN~~----v~g--~~n~evv~gDA~~y~fe----~ADv   99 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAE--ENLH----VPG--DVNWEVVVGDARDYDFE----NADV   99 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhh--hcCC----CCC--CcceEEEeccccccccc----ccce
Confidence            78999999999999866554  566999999996444433  3321    112  35899999999998762    5789


Q ss_pred             EEEecc---ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        137 VFVNNF---AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       137 v~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      |+|+..   +.......++..+..-||-.+.++
T Consensus       100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             eHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            988754   345566777888888888888876

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.25  E-value=6.9e-06  Score=75.39  Aligned_cols=101  Identities=9%  Similarity=0.040  Sum_probs=74.3

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      +-+|||+.||+|..++.++.+. |...|+++|+++.++...+  ++++.    .+.  .+++++++|+.++-... ...+
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~--~N~~~----N~~--~~~~v~~~Da~~~l~~~-~~~f  115 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK--NNVEY----NSV--ENIEVPNEDAANVLRYR-NRKF  115 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH--HHHHH----hCC--CcEEEEchhHHHHHHHh-CCCC
Confidence            3589999999999999999874 6778999999998555433  44432    222  36899999998753211 1246


Q ss_pred             EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|+++.+   ..+...+..+.+.+++||.+.++
T Consensus       116 DvIdlDPf---Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       116 HVIDIDPF---GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CEEEeCCC---CCcHHHHHHHHHhcccCCEEEEE
Confidence            78988763   23456788889999999999876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=7e-06  Score=76.65  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=76.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +...++.++..++++|||+=||.|.+++.+|+.  ..+|+|+|+++.++..|+  ++++    .++.  .|++|+.+|.+
T Consensus       282 ~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~--~NA~----~n~i--~N~~f~~~~ae  351 (432)
T COG2265         282 YETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQ--ENAA----ANGI--DNVEFIAGDAE  351 (432)
T ss_pred             HHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHH--HHHH----HcCC--CcEEEEeCCHH
Confidence            345777788889999999999999999999854  445999999998555544  4444    2343  47999999999


Q ss_pred             CCcccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +....- ....+|+|+++..=  ......+.+....++|-..+.++
T Consensus       352 ~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~~p~~IvYVS  395 (432)
T COG2265         352 EFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKLKPKRIVYVS  395 (432)
T ss_pred             HHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhcCCCcEEEEe
Confidence            866322 22456788875320  11233344444556777777664

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.21  E-value=8e-06  Score=73.61  Aligned_cols=108  Identities=17%  Similarity=0.217  Sum_probs=79.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +++++.  .+|.+|||+=||.|.+++.+|+. |..+|+++|++|.+..+.  +++++    .++. .+.++.++||..+.
T Consensus       181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L--~eNi~----LN~v-~~~v~~i~gD~rev  250 (341)
T COG2520         181 RVAELV--KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYL--KENIR----LNKV-EGRVEPILGDAREV  250 (341)
T ss_pred             HHHhhh--cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHH--HHHHH----hcCc-cceeeEEeccHHHh
Confidence            465553  45999999999999999998875 555599999999855553  34443    2333 34599999999987


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +...  ..+|-|+++..   .+..+.+....+.+|+||.+-.+
T Consensus       251 ~~~~--~~aDrIim~~p---~~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         251 APEL--GVADRIIMGLP---KSAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             hhcc--ccCCEEEeCCC---CcchhhHHHHHHHhhcCcEEEEE
Confidence            7543  34677887643   44456677778889999999887

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.21  E-value=1e-05  Score=70.91  Aligned_cols=104  Identities=17%  Similarity=0.288  Sum_probs=69.5

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ....+.++++.+++.++..|||||.|+|.++..++...  .++++||+++.   +..   .+++.   .. ..++++++.
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~---~~~---~L~~~---~~-~~~~~~vi~   82 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPD---LAK---HLKER---FA-SNPNVEVIN   82 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHH---HHH---HHHHH---CT-TCSSEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHh---HHH---HHHHH---hh-hcccceeee
Confidence            35667889999999999999999999999999998764  55999999985   222   22211   11 246999999


Q ss_pred             cCCCCCcccccc-cceEEEEEeccccCcCHHHHHHHHHh
Q psy17227        120 GDFLTEEHREKI-TQASIVFVNNFAFGPTVDHALKERFQ  157 (268)
Q Consensus       120 gD~~~l~~~~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r  157 (268)
                      +|+.+++..... .+...|+.|..+.  --...+..+..
T Consensus        83 ~D~l~~~~~~~~~~~~~~vv~NlPy~--is~~il~~ll~  119 (262)
T PF00398_consen   83 GDFLKWDLYDLLKNQPLLVVGNLPYN--ISSPILRKLLE  119 (262)
T ss_dssp             S-TTTSCGGGHCSSSEEEEEEEETGT--GHHHHHHHHHH
T ss_pred             cchhccccHHhhcCCceEEEEEeccc--chHHHHHHHhh
Confidence            999998865421 1233555553331  12334444444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.17  E-value=8.6e-06  Score=72.09  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             CCEEEEEcCCCCHH----HHHHHHHhC----CcEEEEEeCCCChhHHHHHH----H--------HHHHHHHHh-----c-
Q psy17227         56 DDVFVDLGSGVGQV----VLQVAAATG----CKICWGVEKADLPAKYAEMH----T--------VFKRWMQWY-----G-  109 (268)
Q Consensus        56 ~~~vLDiGCG~G~~----~~~la~~~~----~~~v~GiD~s~~~~~~a~~~----~--------~~~~~~~~~-----~-  109 (268)
                      .-+|...||+||.=    ++.+....+    .-+|+|+|+|+.++..|+.-    .        ..+++-...     + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            36899999999963    333333222    12599999999866655521    0        011111100     0 


Q ss_pred             --cc---cccEEEEEcCCCCCcccccccceEEEEEecc-c-cCc-CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 --KR---HGEFRLVKGDFLTEEHREKITQASIVFVNNF-A-FGP-TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 --~~---~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~-~~~-~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..   ...|+|.+.|+.+.+++. ...+|+|+|.++ + +.+ ...+++.++++.|+|||.+++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence              00   136899999998855431 135688998655 3 433 3667789999999999998874

>KOG4058|consensus

Probab=98.16  E-value=1.5e-05  Score=62.88  Aligned_cols=123  Identities=24%  Similarity=0.483  Sum_probs=83.6

Q ss_pred             ccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH
Q psy17227         26 NVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM  105 (268)
Q Consensus        26 ~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~  105 (268)
                      +-.-||-+     .+.+.+..++..+.-.+..+.+|||+|.|++....|+ .|....+|+|++|-.+.+++... .+   
T Consensus        48 R~cvPYVp-----AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar-~g~~~a~GvELNpwLVaysrl~a-~R---  117 (199)
T KOG4058|consen   48 RLCVPYVP-----ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAAR-CGLRPAVGVELNPWLVAYSRLHA-WR---  117 (199)
T ss_pred             eecccccC-----ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhh-hCCCcCCceeccHHHHHHHHHHH-HH---
Confidence            33455555     6667888899998777877899999999999987665 46555799999997666655221 11   


Q ss_pred             HHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHh-cCCCCcEEEEe
Q psy17227        106 QWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQ-DLKDGARIVSS  168 (268)
Q Consensus       106 ~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r-~LkpGG~~i~~  168 (268)
                        .|. .+..+|..-|+++..+.+  ...-+||-     .+.++..+....+ .|..|.+++..
T Consensus       118 --~g~-~k~trf~RkdlwK~dl~d--y~~vviFg-----aes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  118 --AGC-AKSTRFRRKDLWKVDLRD--YRNVVIFG-----AESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             --Hhc-ccchhhhhhhhhhccccc--cceEEEee-----hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence              232 257889999999876543  22213332     2445555555555 78889999876

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.11  E-value=1.5e-05  Score=70.42  Aligned_cols=107  Identities=14%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      .+||=||-|.|+.++.+.+..+..+++-|||++..+.+++  +.+....  .+...++++++.+|..++-- +....+|+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar--~~l~~~~--~~~~dpRv~i~i~Dg~~~v~-~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELAR--KYLPEPS--GGADDPRVEIIIDDGVEFLR-DCEEKFDV  152 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHH--HhccCcc--cccCCCceEEEeccHHHHHH-hCCCcCCE
Confidence            5999999999999999998777778999999997666654  3332211  11124689999999877431 11125788


Q ss_pred             EEEecccc-Cc----CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        137 VFVNNFAF-GP----TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       137 v~~~~~~~-~~----~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |++..+=. .|    --...++.+.+.|+|+|.+++.
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            99876511 11    1256678889999999999985

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.09  E-value=2.7e-05  Score=69.92  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.+|+++|||||++|+.+-.+++. |. +|+|||..+       |...+.        ..++|+...+|.......  ..
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~-~V~AVD~g~-------l~~~L~--------~~~~V~h~~~d~fr~~p~--~~  269 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR-GM-FVTAVDNGP-------MAQSLM--------DTGQVEHLRADGFKFRPP--RK  269 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc-CC-EEEEEechh-------cCHhhh--------CCCCEEEEeccCcccCCC--CC
Confidence            368999999999999999888764 66 499999876       222221        246899999998775421  23


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCC--cEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDG--ARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG--G~~i~~  168 (268)
                      .+|.+++...   ..+.....-+.+.|..|  ..+|++
T Consensus       270 ~vDwvVcDmv---e~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        270 NVDWLVCDMV---EKPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             CCCEEEEecc---cCHHHHHHHHHHHHhcCcccEEEEE
Confidence            5688998866   44556666666666655  345554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.08  E-value=4.7e-06  Score=77.70  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC-----hhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL-----PAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .++||||||+|.++.++..+ +   |+.+-+.+.     ++++|.          +.|..   .-+-..--..|||++++
T Consensus       119 R~~LDvGcG~aSF~a~l~~r-~---V~t~s~a~~d~~~~qvqfal----------eRGvp---a~~~~~~s~rLPfp~~~  181 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER-N---VTTMSFAPNDEHEAQVQFAL----------ERGVP---AMIGVLGSQRLPFPSNA  181 (506)
T ss_pred             EEEEeccceeehhHHHHhhC-C---ceEEEcccccCCchhhhhhh----------hcCcc---hhhhhhccccccCCccc
Confidence            36899999999999877653 3   444444332     222221          22321   11111123469998887


Q ss_pred             cceEEEEEecc-c-cCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        132 TQASIVFVNNF-A-FGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       132 ~d~dvv~~~~~-~-~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      ||  +|-+... . |.++-...|-|+-|+|+|||.|+.+.+
T Consensus       182 fD--mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  182 FD--MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hh--hhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence            65  5544333 2 334445568899999999999998733

; GO: 0008168 methyltransferase activity

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.07  E-value=7e-05  Score=68.19  Aligned_cols=121  Identities=15%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--------------------------------c------
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--------------------------------K------   80 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--------------------------------~------   80 (268)
                      +-+.....++...++.++..++|-=||+|.+++.+|.....                                .      
T Consensus       175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~  254 (381)
T COG0116         175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL  254 (381)
T ss_pred             chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence            44445567888889999999999999999999998875421                                0      


Q ss_pred             -EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccc----cCcCHHH-HHHH
Q psy17227         81 -ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFA----FGPTVDH-ALKE  154 (268)
Q Consensus        81 -~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~----~~~~~~~-~l~e  154 (268)
                       .++|+|+++.++..|+  .|++    ..|. .+.|+|.++|+.+++-+.  ..+|+|++|..+    ....... ...+
T Consensus       255 ~~~~G~Did~r~i~~Ak--~NA~----~AGv-~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~  325 (381)
T COG0116         255 PIIYGSDIDPRHIEGAK--ANAR----AAGV-GDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYRE  325 (381)
T ss_pred             ceEEEecCCHHHHHHHH--HHHH----hcCC-CceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence             2689999998766665  4443    3565 468999999999987432  345788888663    1121122 2222


Q ss_pred             H----HhcCCCCcEEEEe
Q psy17227        155 R----FQDLKDGARIVSS  168 (268)
Q Consensus       155 ~----~r~LkpGG~~i~~  168 (268)
                      +    .+.++-.++++++
T Consensus       326 fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         326 FGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHHhcCCceEEEE
Confidence            2    2566666677765

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.06  E-value=9.2e-06  Score=68.42  Aligned_cols=119  Identities=14%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             HHHHHHcCCC------CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEE
Q psy17227         45 SRMIDQINAT------PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRL  117 (268)
Q Consensus        45 ~~ll~~l~~~------~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~  117 (268)
                      +.++.++...      ...+.||.|||-|+++..+.... +.+|--||.++.  .+..+++.       .+. ...-.++
T Consensus        39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~--Fl~~a~~~-------l~~~~~~v~~~  108 (218)
T PF05891_consen   39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEK--FLEQAKEY-------LGKDNPRVGEF  108 (218)
T ss_dssp             HHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HH--HHHHHHHH-------TCCGGCCEEEE
T ss_pred             HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHH--HHHHHHHH-------hcccCCCcceE
Confidence            3466666443      35689999999999998775543 556889998875  23223222       121 1234677


Q ss_pred             EEcCCCCCcccccccceEEEEEec-cccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCC
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNN-FAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLN  175 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~-~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~  175 (268)
                      .+.-+.++....  ..+|+|++.= ..|.  .++...|+++...|+|||.|++-+.....+
T Consensus       109 ~~~gLQ~f~P~~--~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~  167 (218)
T PF05891_consen  109 YCVGLQDFTPEE--GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG  167 (218)
T ss_dssp             EES-GGG----T--T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred             EecCHhhccCCC--CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence            877777654322  3578999752 2344  558888999999999999999976665543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.05  E-value=9.5e-06  Score=70.44  Aligned_cols=110  Identities=16%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT-  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~-  132 (268)
                      .+..+||=||-|.|..++.+.+..+..+++.||+++..+.+++  +.+....  .+...++++++.+|....=- .... 
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~--~~f~~~~--~~~~d~r~~i~~~Dg~~~l~-~~~~~  149 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELAR--KYFPEFS--EGLDDPRVRIIIGDGRKFLK-ETQEE  149 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHH--HHTHHHH--TTGGSTTEEEEESTHHHHHH-TSSST
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHH--Hhchhhc--cccCCCceEEEEhhhHHHHH-hccCC
Confidence            3567899999999999999877655667999999998666655  3333211  11235699999999866321 1112 


Q ss_pred             ceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++..+- ..+.    -...++.+.+.|+|||.+++.
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~  190 (246)
T PF01564_consen  150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ  190 (246)
T ss_dssp             -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence            57899987652 1111    246678888999999999974

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1663|consensus

Probab=98.03  E-value=8.9e-05  Score=62.73  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=78.6

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc--
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE--  126 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~--  126 (268)
                      +.+-..+++||||-=||.-++.+|...+.. +|+++|++++...+..  +    ..+..|. ..+|++++|++.+ ++  
T Consensus        69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~--~----~~k~agv-~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   69 IRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL--E----LVKLAGV-DHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH--H----HHHhccc-cceeeeeecchhhhHHHH
Confidence            344556789999999999888888876543 7999999997555542  2    2223444 4699999999875 32  


Q ss_pred             ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        127 HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       127 ~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      ..+ +...+|.+|+.+.  -..-...+.+..+.+|+||.+++-....+
T Consensus       142 ~~~~~~~tfDfaFvDad--K~nY~~y~e~~l~Llr~GGvi~~DNvl~~  187 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDAD--KDNYSNYYERLLRLLRVGGVIVVDNVLWP  187 (237)
T ss_pred             HhcCCCCceeEEEEccc--hHHHHHHHHHHHhhcccccEEEEeccccC
Confidence            111 2345678898733  22334667888999999999998533433

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.03  E-value=2e-05  Score=68.99  Aligned_cols=108  Identities=17%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHH-----------------H--HHh------
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRW-----------------M--QWY------  108 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~-----------------~--~~~------  108 (268)
                      ...+||--|||.|+++..+|.. |.. |.|.|.|-.|..... +.....+.                 .  +..      
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-GYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-cce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            3568999999999999999986 776 999999987644443 22210000                 0  000      


Q ss_pred             ------ccccccEEEEEcCCCCCcccc---cccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        109 ------GKRHGEFRLVKGDFLTEEHRE---KITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       109 ------~~~~~~i~~~~gD~~~l~~~~---~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                            -....+++...|||.+...++   +.+|+ |+++ -++ ..+++...+..|.++|||||..|
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~-VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDV-VVTC-FFIDTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccE-EEEE-EEeechHHHHHHHHHHHHHhccCCEEE
Confidence                  001247889999998865443   34444 3333 122 23567888999999999999544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=8.9e-05  Score=67.78  Aligned_cols=114  Identities=17%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ....++.+||.+|||+.++.|+=+.++|.....  ..|+++|+++.  ++..+.+++++    .|.  .++..++.|...
T Consensus       148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~R----lG~--~nv~~~~~d~~~  219 (355)
T COG0144         148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLKR----LGV--RNVIVVNKDARR  219 (355)
T ss_pred             HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHHH----cCC--CceEEEeccccc
Confidence            445679999999999999999999999987643  33699999986  55556666654    454  468889999876


Q ss_pred             Cccccccc-ceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKIT-QASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~-d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++-..... .+|.|++.+.|-       .|+                ..+.|...++.|||||+++-+
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS  287 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS  287 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            55211111 256677554331       111                112356667899999999854

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.01  E-value=2.4e-05  Score=65.55  Aligned_cols=112  Identities=14%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCCHH----HHHHHHH----hC-CcEEEEEeCCCChhHHHHH------------HHHHHHHH-HHhccc-
Q psy17227         55 PDDVFVDLGSGVGQV----VLQVAAA----TG-CKICWGVEKADLPAKYAEM------------HTVFKRWM-QWYGKR-  111 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~----~~~la~~----~~-~~~v~GiD~s~~~~~~a~~------------~~~~~~~~-~~~~~~-  111 (268)
                      +.-+|...||++|.=    ++.+...    .+ .-+++|.|+|+.++..|+.            ....+++. ...+.. 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456899999999963    3333331    12 1269999999986666552            11112221 111100 


Q ss_pred             ------cccEEEEEcCCCCCcccccccceEEEEEecc--ccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 ------HGEFRLVKGDFLTEEHREKITQASIVFVNNF--AFGPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 ------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~--~~~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                            ..+|+|.+.|+.+.+.  ...++|+|+|-++  ++.++ ..+.+..+++.|+|||.+++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCc--ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                  1479999999998221  2246799999776  35544 455678888999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.00  E-value=6.9e-05  Score=65.79  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CEEEEEcCCCCH-HHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHH-HhccccccEEEEEcCCCCCcccccccc
Q psy17227         57 DVFVDLGSGVGQ-VVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQ-WYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        57 ~~vLDiGCG~G~-~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+|+=||||.== .++.+++.++. ..|+++|+++.+..+++      +.++ ..|+ ..+++|+++|..+.+.  +..+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~------~lv~~~~~L-~~~m~f~~~d~~~~~~--dl~~  192 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR------RLVASDLGL-SKRMSFITADVLDVTY--DLKE  192 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH------HHHH---HH--SSEEEEES-GGGG-G--G---
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH------HHHhhcccc-cCCeEEEecchhcccc--cccc
Confidence            499999999644 46666766653 35899999998655554      2222 1233 3589999999987653  2235


Q ss_pred             eEEEEEeccc--cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFA--FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~--~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++.+..  -..+..+.+..+.+.++||++++.-
T Consensus       193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            6788876653  2347888999999999999999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.95  E-value=6.8e-05  Score=65.49  Aligned_cols=100  Identities=12%  Similarity=-0.001  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||=||-|.|+.++.+.+. +. +|+-|||++..+.+++  +.+.....  +..+++++++.. +.+    .....
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k--~~lP~~~~--~~~DpRv~l~~~-~~~----~~~~~  139 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFI--SFFPHFHE--VKNNKNFTHAKQ-LLD----LDIKK  139 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHH--HHCHHHHH--hhcCCCEEEeeh-hhh----ccCCc
Confidence            44578999999999999998875 44 6999999998666665  33333211  345678888762 211    11134


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|||++.++ +   ....++.+.|.|+|||.+++-
T Consensus       140 fDVIIvDs~-~---~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        140 YDLIICLQE-P---DIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CCEEEEcCC-C---ChHHHHHHHHhcCCCcEEEEC
Confidence            688888754 2   256678889999999999974

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.95  E-value=3.3e-05  Score=61.20  Aligned_cols=102  Identities=18%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHH-----HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCCCC
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAA-----ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFLTE  125 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~-----~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~~l  125 (268)
                      ...+..+|+|+|||.|.+++.++.     ..+.. |+|||.++.....+.  +..+    ..+.. ..++++..+++.+.
T Consensus        22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~--~~~~----~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQ--KRAQ----KLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHH--HHHH----Hhcchhhccchhhccchhhh
Confidence            346788999999999999999988     44444 999999997433332  2222    22211 24677888877654


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      +..   ...++++.-  +-..++...+-+++-.  |+..+++
T Consensus        95 ~~~---~~~~~~vgL--HaCG~Ls~~~l~~~~~--~~~~~l~  129 (141)
T PF13679_consen   95 SSS---DPPDILVGL--HACGDLSDRALRLFIR--PNARFLV  129 (141)
T ss_pred             ccc---CCCeEEEEe--ecccchHHHHHHHHHH--cCCCEEE
Confidence            321   122344432  2234555554444433  6665554

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.93  E-value=1.1e-05  Score=73.69  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+++.++..++ +|||+-||.|.+++.+|..  +.+|+|||+++.++..|+  ++++    ..+  ..|++|+++++.
T Consensus       186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~--~Na~----~N~--i~n~~f~~~~~~  254 (352)
T PF05958_consen  186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDAR--ENAK----LNG--IDNVEFIRGDAE  254 (352)
T ss_dssp             HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHH--HHHH----HTT----SEEEEE--SH
T ss_pred             HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHH--HHHH----HcC--CCcceEEEeecc
Confidence            3456677777766 7999999999999998875  345999999998555554  4443    233  358999998875


Q ss_pred             CC
Q psy17227        124 TE  125 (268)
Q Consensus       124 ~l  125 (268)
                      ++
T Consensus       255 ~~  256 (352)
T PF05958_consen  255 DF  256 (352)
T ss_dssp             HC
T ss_pred             ch
Confidence            53

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.91  E-value=7.2e-06  Score=61.49  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             EEEcCCCCHHHHHHHHHhCCc---EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-ccccccce
Q psy17227         60 VDLGSGVGQVVLQVAAATGCK---ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HREKITQA  134 (268)
Q Consensus        60 LDiGCG~G~~~~~la~~~~~~---~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~~~~~d~  134 (268)
                      |+|||..|..+..+++.....   +++++|..+.   .....+.++    ..+. ..+++++++|..+. + +.  ...+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~----~~~~-~~~~~~~~g~s~~~l~~~~--~~~~   70 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIK----KAGL-SDRVEFIQGDSPDFLPSLP--DGPI   70 (106)
T ss_dssp             --------------------------EEEESS-------------------GGG--BTEEEEES-THHHHHHHH--H--E
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc---ccccchhhh----hcCC-CCeEEEEEcCcHHHHHHcC--CCCE
Confidence            689999999988877643222   5899999984   111222222    2233 24799999999753 2 22  2367


Q ss_pred             EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |++++..-+-.+.....+..+...|+|||.+++-
T Consensus        71 dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   71 DLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            8999987644455677788889999999999884

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.84  E-value=0.00012  Score=70.31  Aligned_cols=80  Identities=13%  Similarity=0.090  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCC--------cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGC--------KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~--------~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      .+.+|||.|||+|.++..++.....        ..++|+|+++.++..++  .++..    .+  ...+.++++|+....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~--~~l~~----~~--~~~~~i~~~d~l~~~  102 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK--KLLGE----FA--LLEINVINFNSLSYV  102 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH--HHHhh----cC--CCCceeeeccccccc
Confidence            3468999999999999988876521        34899999997555554  22221    11  124566777755322


Q ss_pred             c---cccccceEEEEEecc
Q psy17227        127 H---REKITQASIVFVNNF  142 (268)
Q Consensus       127 ~---~~~~~d~dvv~~~~~  142 (268)
                      +   .+....+|+|+.|..
T Consensus       103 ~~~~~~~~~~fD~IIgNPP  121 (524)
T TIGR02987       103 LLNIESYLDLFDIVITNPP  121 (524)
T ss_pred             ccccccccCcccEEEeCCC
Confidence            1   111124688888865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2187|consensus

Probab=97.78  E-value=1.9e-05  Score=73.70  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +=+++++..+..+||+-||||.+++.+|+  +..+|+||++++.++.-|+  .++.    ..|  ..|++|++|-++++
T Consensus       375 i~e~~~l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~--~nA~----~Ng--isNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  375 IGEWAGLPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAE--KNAQ----ING--ISNATFIVGQAEDL  443 (534)
T ss_pred             HHHHhCCCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhh--hcch----hcC--ccceeeeecchhhc
Confidence            44678899999999999999999987776  4555999999998666554  3332    234  35999999977764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.00039  Score=59.24  Aligned_cols=109  Identities=15%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc-EEEEEcC
Q psy17227         44 ISRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE-FRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-i~~~~gD  121 (268)
                      +...++..++. +|..+||||+-||+++-.+ .+.|+.+|+|||..-.  +++.   .++        ..++ +.+...|
T Consensus        67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~l-Lq~gAk~VyavDVG~~--Ql~~---kLR--------~d~rV~~~E~tN  132 (245)
T COG1189          67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVL-LQRGAKHVYAVDVGYG--QLHW---KLR--------NDPRVIVLERTN  132 (245)
T ss_pred             HHHHHHhcCcCCCCCEEEEecCCCccHHHHH-HHcCCcEEEEEEccCC--ccCH---hHh--------cCCcEEEEecCC
Confidence            34566777776 5788999999999999765 4578989999999986  3332   111        1223 4566667


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.+...+-....|++++... | ..+...|..+...++||+.++..
T Consensus       133 ~r~l~~~~~~~~~d~~v~DvS-F-ISL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         133 VRYLTPEDFTEKPDLIVIDVS-F-ISLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             hhhCCHHHcccCCCeEEEEee-h-hhHHHHHHHHHHhcCCCceEEEE
Confidence            766543222223456666532 1 45677888999999999998874

>KOG3115|consensus

Probab=97.77  E-value=3.9e-05  Score=63.64  Aligned_cols=108  Identities=16%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH-HHhccccccEEEEEcCCCC-Ccccccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM-QWYGKRHGEFRLVKGDFLT-EEHREKITQ  133 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~i~~~~gD~~~-l~~~~~~~d  133 (268)
                      .-.+.|||||.|+++..++-.++..-+.|++|-......-  ++++++.. ...+....|+.+...+... +|   +.|.
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYV--k~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~  135 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYV--KERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFE  135 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHH--HHHHHHHhccccccccccceeeeccchhhcc---chhh
Confidence            3469999999999999999999998899999986433332  23333211 0111224578888877765 33   2111


Q ss_pred             ---eE-EEEEe-ccccCcC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ---AS-IVFVN-NFAFGPT-------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ---~d-vv~~~-~~~~~~~-------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                         .+ ..++. ..+++..       -...+.+..=+|++||.++..
T Consensus       136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence               11 11111 1111111       112345555689999999854

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.76  E-value=0.00016  Score=64.14  Aligned_cols=114  Identities=17%  Similarity=0.217  Sum_probs=78.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ....+...+|.+|||+.+|.|+=+.++|...+ ...+++.|+++.  ++..+.+++++    .|.  .++..++.|..++
T Consensus        77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~--Rl~~l~~~~~r----~g~--~~v~~~~~D~~~~  148 (283)
T PF01189_consen   77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPK--RLKRLKENLKR----LGV--FNVIVINADARKL  148 (283)
T ss_dssp             HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHHHHHH----TT---SSEEEEESHHHHH
T ss_pred             ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHH--HHHHHHHHHHh----cCC--ceEEEEeeccccc
Confidence            44557889999999999999999999998876 447999999985  55555555543    443  4788888888776


Q ss_pred             cccccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcC----CCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDL----KDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~L----kpGG~~i~~  168 (268)
                      ........+|.|++...|-       .|+.                .+.|....+.+    ||||+++-+
T Consensus       149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs  218 (283)
T PF01189_consen  149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS  218 (283)
T ss_dssp             HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred             cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence            3211112367788765431       1221                11245666889    999999844

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.75  E-value=0.0003  Score=61.62  Aligned_cols=112  Identities=13%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCCCH----HHHHHHHHhCC-----cEEEEEeCCCChhHHHHHH----HHH---------HHHHHHhccc-
Q psy17227         55 PDDVFVDLGSGVGQ----VVLQVAAATGC-----KICWGVEKADLPAKYAEMH----TVF---------KRWMQWYGKR-  111 (268)
Q Consensus        55 ~~~~vLDiGCG~G~----~~~~la~~~~~-----~~v~GiD~s~~~~~~a~~~----~~~---------~~~~~~~~~~-  111 (268)
                      ..-+|.-.||+||.    +++.+....+.     -+|+|.|||..++..|++-    ...         +++-...+.. 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            35689999999995    45544454431     3699999999866666521    111         1111111110 


Q ss_pred             -------cccEEEEEcCCCCCcccccccceEEEEEecc--ccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 -------HGEFRLVKGDFLTEEHREKITQASIVFVNNF--AFGPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 -------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~--~~~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                             ...|.|.+.|..+-++  ....+|+|+|-++  ++... ..+.+...+..|+|||.+++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   1368899999887552  1235789999766  35544 455677888999999999974

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.73  E-value=9.4e-05  Score=58.22  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +|||||||.|..+..+++..+..+++++|.++.+...  ++++++    ..+.  .++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~--l~~~~~----~n~~--~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEI--LEENVK----LNNL--PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHH--HHHHHH----HcCC--CcEEEEEeeeeC
Confidence            4899999999999998887655469999999973332  223322    2232  368888887765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.0006  Score=56.71  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=75.2

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-c
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-H  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~  127 (268)
                      ..+++++|++||=||.-+|...-+++...|...++|||.|+.+  ..+....+++        -.|+--+.+|+.... +
T Consensus        70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~--~reLl~~a~~--------R~Ni~PIL~DA~~P~~Y  139 (231)
T COG1889          70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRP--MRELLDVAEK--------RPNIIPILEDARKPEKY  139 (231)
T ss_pred             ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchh--HHHHHHHHHh--------CCCceeeecccCCcHHh
Confidence            3457899999999999999999999998886679999999963  2222222221        258889999998744 1


Q ss_pred             cccccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      .--...+|+|+..-.  .|+..+.+ .++-.-||+||.+++.
T Consensus       140 ~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         140 RHLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             hhhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence            111235788887632  34544444 5556789999976654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.66  E-value=0.00035  Score=61.63  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHH
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAE   96 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~   96 (268)
                      .++-..++.-...+|||+|||+|..+..+...++ ...++++|.|+.|..+++
T Consensus        23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~   75 (274)
T PF09243_consen   23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK   75 (274)
T ss_pred             HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence            3344444333456899999999988765555555 347899999998777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.66  E-value=0.00032  Score=59.06  Aligned_cols=82  Identities=11%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-cccceE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-KITQAS  135 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-~~~d~d  135 (268)
                      -++|||||=+......   ..+.-.|+.||+++.                       .-.+.+.||.+.|.+. +...+|
T Consensus        53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-----------------------~~~I~qqDFm~rplp~~~~e~Fd  106 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-----------------------HPGILQQDFMERPLPKNESEKFD  106 (219)
T ss_pred             ceEEeecccCCCCccc---ccCceeeEEeecCCC-----------------------CCCceeeccccCCCCCCccccee
Confidence            5899999986655432   244445999999973                       2336888999988642 234577


Q ss_pred             EEEEeccc-cCcCHHH---HHHHHHhcCCCCcE
Q psy17227        136 IVFVNNFA-FGPTVDH---ALKERFQDLKDGAR  164 (268)
Q Consensus       136 vv~~~~~~-~~~~~~~---~l~e~~r~LkpGG~  164 (268)
                      +|++..++ +.|++.+   .++.+++.|+|+|.
T Consensus       107 vIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  107 VISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            88776653 6666544   47788899999998

>KOG3987|consensus

Probab=97.62  E-value=4.8e-05  Score=63.33  Aligned_cols=109  Identities=14%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHHHcCCC---CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         39 TSFDLISRMIDQINAT---PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~---~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      .+++.+++++.--+..   ...++||+|.|.|.++..++-.+.  .|++.++|..      |+.++++         .+.
T Consensus        93 fSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~t------Mr~rL~k---------k~y  155 (288)
T KOG3987|consen   93 FSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWT------MRDRLKK---------KNY  155 (288)
T ss_pred             ecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHH------HHHHHhh---------cCC
Confidence            3456677766544322   245899999999999998776543  3788888875      4444432         122


Q ss_pred             EEEEcCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCC-CcEEEEe
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKD-GARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~Lkp-GG~~i~~  168 (268)
                      .++-.  .+.-  ...+..|+|++-+.+ -..++-+.++.+..+|.| +|++|+.
T Consensus       156 nVl~~--~ew~--~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  156 NVLTE--IEWL--QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             ceeee--hhhh--hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence            22111  1111  122456788876653 345678899999999999 8998875

>KOG2730|consensus

Probab=97.62  E-value=1.9e-05  Score=66.20  Aligned_cols=63  Identities=27%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      .-..|+|.-||.|+-++..|.+ ++. |++||++|.  .++.++++++    -.|.. .+|+|+|||+.++-
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~-~~~-VisIdiDPi--kIa~AkhNae----iYGI~-~rItFI~GD~ld~~  156 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ-GPY-VIAIDIDPV--KIACARHNAE----VYGVP-DRITFICGDFLDLA  156 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh-CCe-EEEEeccHH--HHHHHhccce----eecCC-ceeEEEechHHHHH
Confidence            4457999999999999999886 444 899999985  7777667665    34654 49999999998753

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.62  E-value=0.00012  Score=60.47  Aligned_cols=118  Identities=15%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChh----HHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPA----KYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +++...++++|++|+|+=-|.|.+++.++...|.. .|++.-..+...    .-.+++...+    +.  ...|++.+-.
T Consensus        39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~----e~--~~aN~e~~~~  112 (238)
T COG4798          39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR----EP--VYANVEVIGK  112 (238)
T ss_pred             ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh----hh--hhhhhhhhCC
Confidence            46677899999999999999999999988876654 577765544210    0011111111    11  1235555655


Q ss_pred             CCCCCcccccccceEEEEE--------eccccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        121 DFLTEEHREKITQASIVFV--------NNFAFGPTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~--------~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      +...++.+++   .|+++-        +..+|.....++...+++.|||||.+++.++..
T Consensus       113 ~~~A~~~pq~---~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a  169 (238)
T COG4798         113 PLVALGAPQK---LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA  169 (238)
T ss_pred             cccccCCCCc---ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            6555442222   233332        223454556778899999999999999986554

>KOG3191|consensus

Probab=97.61  E-value=0.00069  Score=55.44  Aligned_cols=88  Identities=11%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+.+-...+.-....-++|||||+|-.+-.+++..+ .....++|++|.+...  .++.++.    +   ..++..++.|
T Consensus        31 aLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~--Tl~TA~~----n---~~~~~~V~td  101 (209)
T KOG3191|consen   31 ALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA--TLETARC----N---RVHIDVVRTD  101 (209)
T ss_pred             HHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH--HHHHHHh----c---CCccceeehh
Confidence            334434444444467899999999999988888654 3457999999963333  2233331    1   2368889999


Q ss_pred             CCCCcccccccceEEEEEecc
Q psy17227        122 FLTEEHREKITQASIVFVNNF  142 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~  142 (268)
                      +.+--- .  ..+||+..|..
T Consensus       102 l~~~l~-~--~~VDvLvfNPP  119 (209)
T KOG3191|consen  102 LLSGLR-N--ESVDVLVFNPP  119 (209)
T ss_pred             HHhhhc-c--CCccEEEECCC
Confidence            875221 1  35677777654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.60  E-value=0.00062  Score=64.90  Aligned_cols=147  Identities=20%  Similarity=0.264  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhcCCccccccCCCCCCCCcccCc-HHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC----cEE
Q psy17227          9 HIIQQTYNQSVTEPEKLNVYQPFSPFVYGETS-FDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC----KIC   82 (268)
Q Consensus         9 ~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~-~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~----~~v   82 (268)
                      +++..+|..      .++.|+.-.....|+.+ ++.+.+ +++.+...+..+|+|-.||+|++....++..+.    ..+
T Consensus       144 d~~G~~yE~------ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~  217 (489)
T COG0286         144 DLFGDAYEY------LLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFI  217 (489)
T ss_pred             cchhHHHHH------HHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeE
Confidence            455555555      33445444444445532 444544 555667778889999999999999988776642    348


Q ss_pred             EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc---cccceEEEEEecccc----C----------
Q psy17227         83 WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE---KITQASIVFVNNFAF----G----------  145 (268)
Q Consensus        83 ~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~---~~~d~dvv~~~~~~~----~----------  145 (268)
                      +|.|+++....+++|+..+.      |... ++....+|-..-|..+   ....+|.|.+|....    .          
T Consensus       218 yGqE~~~~t~~l~~mN~~lh------gi~~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~  290 (489)
T COG0286         218 YGQEINDTTYRLAKMNLILH------GIEG-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDE  290 (489)
T ss_pred             EEEeCCHHHHHHHHHHHHHh------CCCc-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccc
Confidence            99999998888888765443      3222 4566666655433221   222355565543321    0          


Q ss_pred             ---------cC--H-HHHHHHHHhcCCCCcEEEEe
Q psy17227        146 ---------PT--V-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       146 ---------~~--~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                               +.  - ...+..+...|+|||+..+.
T Consensus       291 ~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         291 RFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             cccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence                     11  1 34568888999998866543

>KOG4589|consensus

Probab=97.56  E-value=0.00041  Score=57.00  Aligned_cols=97  Identities=13%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CCCCCccc--
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DFLTEEHR--  128 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~~~l~~~--  128 (268)
                      ++|+++|||+||-+|.-+.-+.++. +...|.|||+-.-                   .....+.++++ |+.+....  
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------------------~p~~Ga~~i~~~dvtdp~~~~k  127 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------------------EPPEGATIIQGNDVTDPETYRK  127 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------------------cCCCCcccccccccCCHHHHHH
Confidence            5789999999999999997666665 5557999999752                   01235777777 77764310  


Q ss_pred             ----ccccceEEEEEeccccC-----cCHHHHHHHH-------HhcCCCCcEEEEe
Q psy17227        129 ----EKITQASIVFVNNFAFG-----PTVDHALKER-------FQDLKDGARIVSS  168 (268)
Q Consensus       129 ----~~~~d~dvv~~~~~~~~-----~~~~~~l~e~-------~r~LkpGG~~i~~  168 (268)
                          .+...+|+|++.+....     .|....+.-+       ...++|+|.|++-
T Consensus       128 i~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK  183 (232)
T KOG4589|consen  128 IFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK  183 (232)
T ss_pred             HHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence                11245788988755321     2333333222       2468999999985

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00025  Score=58.60  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ..-.|++|||+|+|.|-.++..|+ .|...|+..|+.|......+  -+++    .+|   -.+.|+..|..- +  +  
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~--lNa~----ang---v~i~~~~~d~~g-~--~--  140 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIR--LNAA----ANG---VSILFTHADLIG-S--P--  140 (218)
T ss_pred             cccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhh--cchh----hcc---ceeEEeeccccC-C--C--
Confidence            344689999999999999986554 68888999999986222222  2222    122   378899988865 2  1  


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcE-EEEeCCCC
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGAR-IVSSKSFC  172 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~-~i~~~~~~  172 (268)
                      ..+|++....+++....-..+-..++.|+..|. +++-++-+
T Consensus       141 ~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         141 PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             cceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            256888888887777766666667766655444 44444443

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.49  E-value=0.00058  Score=60.88  Aligned_cols=89  Identities=18%  Similarity=0.391  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+.+.+|..++|.=||.|+.+..++...+..+|+|+|.++.++..++  +.+..    .   ..+++++++++
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak--~~L~~----~---~~R~~~i~~nF   78 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK--ERLSD----F---EGRVVLIHDNF   78 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HHHhh----c---CCcEEEEeCCH
Confidence            456788889999999999999999999999998765466999999997554443  33321    1   24899999999


Q ss_pred             CCCcc--cc-cccceEEEEEe
Q psy17227        123 LTEEH--RE-KITQASIVFVN  140 (268)
Q Consensus       123 ~~l~~--~~-~~~d~dvv~~~  140 (268)
                      .+++-  .. +...+|.|+.+
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVD   99 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEe
Confidence            98652  11 22346777765

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10742 putative methyltransferase; Provisional

Probab=97.46  E-value=0.0005  Score=59.34  Aligned_cols=93  Identities=17%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             HHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHH--Hhccc-cccEEEEEc
Q psy17227         46 RMIDQINATPDD--VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ--WYGKR-HGEFRLVKG  120 (268)
Q Consensus        46 ~ll~~l~~~~~~--~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~--~~~~~-~~~i~~~~g  120 (268)
                      .+++.+++++|.  +|||+=+|+|..++.+|. .|+. |++||-++....+-  .+.+++...  +.+.. ..+++++++
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las-~G~~-V~~vEr~p~vaalL--~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCR-VRMLERNPVVAALL--DDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHH-cCCE-EEEEECCHHHHHHH--HHHHHHhhhccccchhhhceEEEEeC
Confidence            377788999998  999999999999998776 5888 99999999643332  233332100  00110 147999999


Q ss_pred             CCCCCcccccccceEEEEEeccc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFA  143 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~  143 (268)
                      |..++--. ....+|+|+....+
T Consensus       153 da~~~L~~-~~~~fDVVYlDPMf  174 (250)
T PRK10742        153 SSLTALTD-ITPRPQVVYLDPMF  174 (250)
T ss_pred             cHHHHHhh-CCCCCcEEEECCCC
Confidence            98764211 11246889987553

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.43  E-value=0.00014  Score=63.29  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH------------HHHHhccc---------
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR------------WMQWYGKR---------  111 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~------------~~~~~~~~---------  111 (268)
                      -.+|.++||||||+--.-. ++..--+..++..|.++.  -....++.+++            .|...|..         
T Consensus        54 ~~~g~~llDiGsGPtiy~~-lsa~~~f~~I~l~dy~~~--N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~  130 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQL-LSACEWFEEIVLSDYSEQ--NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK  130 (256)
T ss_dssp             SS-EEEEEEES-TT--GGG-TTGGGTEEEEEEEESSHH--HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhh-hhHHHhhcceEEeeccHh--hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence            3467899999999844432 333334556999999874  11111111111            01111110         


Q ss_pred             -cccE-EEEEcCCCCCc-ccc--ccc-ceEEEEEeccc--cCc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 -HGEF-RLVKGDFLTEE-HRE--KIT-QASIVFVNNFA--FGP---TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 -~~~i-~~~~gD~~~l~-~~~--~~~-d~dvv~~~~~~--~~~---~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       -..| +++..|+.+.+ +..  ... .+|+|++.-.+  -.+   ....+++++.+.|||||.||+.
T Consensus       131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~  198 (256)
T PF01234_consen  131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA  198 (256)
T ss_dssp             HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             0124 37889998855 322  122 37777654221  223   3566789999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.34  E-value=0.0013  Score=59.39  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-REKI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~~~  131 (268)
                      ++...+||=+|-|.|-.++++.+.-+..+++-+|++|.|+.+++-...+++ .......+++++++..|+.++-- ..+ 
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~-~N~~sf~dpRv~Vv~dDAf~wlr~a~~-  364 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA-LNQGSFSDPRVTVVNDDAFQWLRTAAD-  364 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh-hccCCccCCeeEEEeccHHHHHHhhcc-
Confidence            345678999999999999998875557789999999998888763233322 11223345689999999987542 122 


Q ss_pred             cceEEEEEecc-ccCcCHHHH-----HHHHHhcCCCCcEEEEe--CCCC-CCCc
Q psy17227        132 TQASIVFVNNF-AFGPTVDHA-----LKERFQDLKDGARIVSS--KSFC-PLNF  176 (268)
Q Consensus       132 ~d~dvv~~~~~-~~~~~~~~~-----l~e~~r~LkpGG~~i~~--~~~~-~~~~  176 (268)
                       .+|++++... --.+...+.     ..-..|.|+++|++++-  +++. |+-|
T Consensus       365 -~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf  417 (508)
T COG4262         365 -MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF  417 (508)
T ss_pred             -cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence             3466776532 111222222     34445789999999965  3433 4444

>KOG2352|consensus

Probab=97.28  E-value=0.00094  Score=62.35  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=73.1

Q ss_pred             CCCCC-EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         53 ATPDD-VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        53 ~~~~~-~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      +.+-. ++|-+|||.-.+...+-+ .|..-++-+|+|+.  .++.|.....       .......+...|+..+.|++.+
T Consensus        45 ~~p~~~~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V--~V~~m~~~~~-------~~~~~~~~~~~d~~~l~fedES  114 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNSELSEHLYK-NGFEDITNIDSSSV--VVAAMQVRNA-------KERPEMQMVEMDMDQLVFEDES  114 (482)
T ss_pred             hchhhceeEeecCCCCHHHHHHHh-cCCCCceeccccHH--HHHHHHhccc-------cCCcceEEEEecchhccCCCcc
Confidence            34555 999999999999987644 67777999999985  5555543211       1245799999999999998877


Q ss_pred             cceEEEEEeccc---cCc--------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFA---FGP--------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~---~~~--------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+  +|+--.++   +.+        .....+.++.|+|+|||++++.
T Consensus       115 Fd--iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  115 FD--IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             ee--EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence            65  44432221   111        1234478899999999998864

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.21  E-value=0.0029  Score=53.14  Aligned_cols=107  Identities=14%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHH---h-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAA---T-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~---~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      +| ++|+++|.=.|+-++..|..   . +..+|+|||++...  ..+  ..    ...... .++|++++||..+...-+
T Consensus        32 kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~--~a----~e~hp~-~~rI~~i~Gds~d~~~~~  101 (206)
T PF04989_consen   32 KP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNR--KA----IESHPM-SPRITFIQGDSIDPEIVD  101 (206)
T ss_dssp             ---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S---G----GGG-----TTEEEEES-SSSTHHHH
T ss_pred             CC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hch--HH----Hhhccc-cCceEEEECCCCCHHHHH
Confidence            44 68999999999999887753   2 44579999996431  110  00    011112 269999999998865222


Q ss_pred             cc------cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        130 KI------TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       130 ~~------~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      ..      ....+|+-.+-+........|+.....++||+.+|+.|+
T Consensus       102 ~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  102 QVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             TSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             HHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence            11      123234333334445677778887789999999999754

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.18  E-value=0.0033  Score=54.83  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             HHHHHHHHcCCC-CCCEEEEEcCCCC--HHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQINAT-PDDVFVDLGSGVG--QVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~~~-~~~~vLDiGCG~G--~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ++.+.+..+--. -=..+||||||-=  ..+-.+|+. .+..+|+-+|.+|..+..++  ..+.      +...+...++
T Consensus        55 Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~r--alL~------~~~~g~t~~v  126 (267)
T PF04672_consen   55 FLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHAR--ALLA------DNPRGRTAYV  126 (267)
T ss_dssp             HHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCH--HHHT------T-TTSEEEEE
T ss_pred             HHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHH--hhhc------CCCCccEEEE
Confidence            444444444222 2256999999953  335556665 35667999999985333323  2111      1111248999


Q ss_pred             EcCCCCCc--cc--c--cccc---eEEEEEecc-ccC---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEE--HR--E--KITQ---ASIVFVNNF-AFG---PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~--~~--~--~~~d---~dvv~~~~~-~~~---~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+..  +.  .  ...|   .-.+++..+ +|.   .++...+......|.||..++++
T Consensus       127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is  189 (267)
T PF04672_consen  127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS  189 (267)
T ss_dssp             E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred             eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence            99999853  11  0  1111   114555544 343   35788889999999999999987

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.09  E-value=0.0035  Score=52.88  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEE
Q psy17227         59 FVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIV  137 (268)
Q Consensus        59 vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv  137 (268)
                      |.||||--|.+.+.+++...+.+++++|+++.+...|  +++++    ..|+. .+++++.+|-.+ ++..+   ++|+|
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A--~~~i~----~~~l~-~~i~~rlgdGL~~l~~~e---~~d~i   70 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKA--KENIA----KYGLE-DRIEVRLGDGLEVLKPGE---DVDTI   70 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHH--HHHHH----HTT-T-TTEEEEE-SGGGG--GGG------EE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HHHHH----HcCCc-ccEEEEECCcccccCCCC---CCCEE
Confidence            6899999999999999987777899999999754443  34444    34543 589999999654 43221   24455


Q ss_pred             EEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        138 FVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++... =..-..+.+.+....+++..+||+.
T Consensus        71 vIAGM-GG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   71 VIAGM-GGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEEEE--HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             EEecC-CHHHHHHHHHhhHHHhccCCeEEEe
Confidence            44322 1111333445555667666677765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.07  E-value=0.0012  Score=56.65  Aligned_cols=89  Identities=18%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             HHHHcCCCCCC--EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHHHHHhcc---ccccEEEEEc
Q psy17227         47 MIDQINATPDD--VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGK---RHGEFRLVKG  120 (268)
Q Consensus        47 ll~~l~~~~~~--~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~~~~~~~---~~~~i~~~~g  120 (268)
                      +++.++++++.  +|||.=||.|.-++-+|. .|++ |+|+|-||.+..+-+ ..+++.+   ....   ...+++++++
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~-V~~lErspvia~Ll~dGL~r~~~---~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCK-VTGLERSPVIAALLKDGLKRAQQ---DPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT---EEEEE--HHHHHHHHHHHHHHHH---STTTHHHHHHHEEEEES
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCe-EEEEECCHHHHHHHHHHHHHHHh---CcHhHHHHHhCCEEEcC
Confidence            77778888875  899999999999998775 6887 999999996433332 2333221   1110   1138999999


Q ss_pred             CCCC-CcccccccceEEEEEecc
Q psy17227        121 DFLT-EEHREKITQASIVFVNNF  142 (268)
Q Consensus       121 D~~~-l~~~~~~~d~dvv~~~~~  142 (268)
                      |..+ ++.+++  .+|||++...
T Consensus       140 d~~~~L~~~~~--s~DVVY~DPM  160 (234)
T PF04445_consen  140 DALEYLRQPDN--SFDVVYFDPM  160 (234)
T ss_dssp             -CCCHCCCHSS----SEEEE--S
T ss_pred             CHHHHHhhcCC--CCCEEEECCC
Confidence            9987 443333  4577877644

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1709|consensus

Probab=97.05  E-value=0.004  Score=52.40  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-ccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~~~  131 (268)
                      .+|.+||.||-|.|-+.-.+-..-+.. =+-|+..|+  .+++|++..-.       +..||-+..|--++ ++ ++++.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~--V~krmr~~gw~-------ek~nViil~g~WeDvl~~L~d~~  169 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPD--VLKRMRDWGWR-------EKENVIILEGRWEDVLNTLPDKH  169 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHH--HHHHHHhcccc-------cccceEEEecchHhhhccccccC
Confidence            678899999999999976654444444 488999986  55555543221       23588888887665 22 44665


Q ss_pred             cceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        132 TQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       132 ~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      |  |-|+-..+ -+..|.......+.|.|||+|+|-...-++.
T Consensus       170 F--DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~  210 (271)
T KOG1709|consen  170 F--DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA  210 (271)
T ss_pred             c--ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence            5  55766655 4667888888999999999999986644443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.85  E-value=0.0077  Score=54.46  Aligned_cols=100  Identities=17%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      -+...+++||++|+=+|+| .|.+++++|+..|++ |+++|.|++  +.+    .++    +.|    .-.++.....+ 
T Consensus       158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~-Via~~~~~~--K~e----~a~----~lG----Ad~~i~~~~~~-  221 (339)
T COG1064         158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE-VIAITRSEE--KLE----LAK----KLG----ADHVINSSDSD-  221 (339)
T ss_pred             ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEeCChH--HHH----HHH----HhC----CcEEEEcCCch-
Confidence            4456789999999888887 567788899988865 999999986  221    122    223    23344433111 


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+.-...+|+++..    .+  ...+....+.||+||++++.
T Consensus       222 ~~~~~~~~~d~ii~t----v~--~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         222 ALEAVKEIADAIIDT----VG--PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             hhHHhHhhCcEEEEC----CC--hhhHHHHHHHHhcCCEEEEE
Confidence            111100115566542    12  56778888999999999986

>KOG1596|consensus

Probab=96.57  E-value=0.012  Score=50.37  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      +.+.++||.+||=||.+.|...-+.+...|.. -|++||.|+..-+-  ...-++        +-.||--|.-|+.... 
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd--L~nmAk--------kRtNiiPIiEDArhP~K  219 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD--LINMAK--------KRTNIIPIIEDARHPAK  219 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH--HHHHhh--------ccCCceeeeccCCCchh
Confidence            56678999999999999999998888876544 58999999852111  001111        2358888888988633 


Q ss_pred             ccccccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +.-...-+|+||+..  -.|+....+ .+..--||+||-|+++
T Consensus       220 YRmlVgmVDvIFaDv--aqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  220 YRMLVGMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eeeeeeeEEEEeccC--CCchhhhhhhhhhhhhhccCCeEEEE
Confidence            111112357788752  345544444 4555689999999876

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.56  E-value=0.02  Score=52.70  Aligned_cols=42  Identities=17%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ....+.++.+||.+|||. |.++..+|+..|..++++++.++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~  220 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPE  220 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            456778899999999998 899999999988756999999975

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.33  E-value=0.16  Score=43.73  Aligned_cols=135  Identities=15%  Similarity=0.054  Sum_probs=64.2

Q ss_pred             HHHHhhcC-CccccccCCCCCCCCcccCcHHHHHH--HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227         13 QTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISR--MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD   89 (268)
Q Consensus        13 ~~y~~~~~-~~~~~~~y~~~~~~~~g~~~~~~~~~--ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~   89 (268)
                      +-|+.++. -|.-...|+....     +....+.+  ++..-+.-.|.+||=||=..- .++.+|......+|+-+|+++
T Consensus         4 ~~~~~i~~~RP~~~~~~DQ~~~-----T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDe   77 (243)
T PF01861_consen    4 EKFSEIVKNRPEPDVELDQGYA-----TPETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDE   77 (243)
T ss_dssp             HHHHHHHTT-----GGGT---B------HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-H
T ss_pred             HHHHHHHHcCCCCccccccccc-----cHHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCH
Confidence            34455554 5777777876654     44555655  334444457889999994332 234445444556799999998


Q ss_pred             ChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCc
Q psy17227         90 LPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA  163 (268)
Q Consensus        90 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG  163 (268)
                      ..+.      .+++.++..|.   +++.+..|+.+ +|- +-...+|+++.+...-...+.-.+......||.-|
T Consensus        78 Rll~------fI~~~a~~~gl---~i~~~~~DlR~~LP~-~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen   78 RLLD------FINRVAEEEGL---PIEAVHYDLRDPLPE-ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             HHHH------HHHHHHHHHT-----EEEE---TTS---T-TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             HHHH------HHHHHHHHcCC---ceEEEEecccccCCH-HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            6333      23333333443   59999999986 331 22346788998766444445556778888888755

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.30  E-value=0.0067  Score=45.43  Aligned_cols=33  Identities=33%  Similarity=0.630  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD   89 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~   89 (268)
                      +...++|||||+|-+.-.+.. -|.. -+|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~-EGy~-G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNS-EGYP-GWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHh-CCCC-cccccccc
Confidence            456799999999999866555 5776 59999875

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.24  E-value=0.041  Score=48.99  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=40.9

Q ss_pred             CCEEEEEcCCCCHHH-HHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEEEEEcCCCCCcc---ccc
Q psy17227         56 DDVFVDLGSGVGQVV-LQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFRLVKGDFLTEEH---REK  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~-~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~gD~~~l~~---~~~  130 (268)
                      .-++||||||.--+- +..++.++.. ++|.|+++..+..|+  ++.++    . ++ ..+|+++...-.+.-|   ...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~-fvaTdID~~sl~~A~--~nv~~----N~~L-~~~I~l~~~~~~~~i~~~i~~~  174 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWS-FVATDIDPKSLESAR--ENVER----NPNL-ESRIELRKQKNPDNIFDGIIQP  174 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--E-EEEEES-HHHHHHHH--HHHHH----T-T--TTTEEEEE--ST-SSTTTSTT-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCe-EEEecCCHHHHHHHH--HHHHh----cccc-ccceEEEEcCCccccchhhhcc
Confidence            457999999998763 4445667776 999999997555544  44432    2 33 3578887653221111   111


Q ss_pred             ccceEEEEEeccccCc
Q psy17227        131 ITQASIVFVNNFAFGP  146 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~  146 (268)
                      ...+|+..||..+|..
T Consensus       175 ~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  175 NERFDFTMCNPPFYSS  190 (299)
T ss_dssp             -S-EEEEEE-----SS
T ss_pred             cceeeEEecCCccccC
Confidence            1357788888776643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1501|consensus

Probab=96.00  E-value=0.015  Score=53.75  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      .|||||.|||-++..+++ .|...|++++.-.-|..+|+      +.+...|. .++|.+|.---.+..... ...+|++
T Consensus        69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~ar------kI~~kng~-SdkI~vInkrStev~vg~-~~RadI~  139 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLAR------KIMHKNGM-SDKINVINKRSTEVKVGG-SSRADIA  139 (636)
T ss_pred             EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHH------HHHhcCCC-ccceeeeccccceeeecC-cchhhhh
Confidence            589999999999986555 56777999999988777765      22223344 358888876665544221 2235555


Q ss_pred             EEecc---ccCcCHHHHHHHHHh-cCCCCcEEE
Q psy17227        138 FVNNF---AFGPTVDHALKERFQ-DLKDGARIV  166 (268)
Q Consensus       138 ~~~~~---~~~~~~~~~l~e~~r-~LkpGG~~i  166 (268)
                      +...+   +-.......+++.++ .++||.+.+
T Consensus       140 v~e~fdtEligeGalps~qhAh~~L~~~nc~~V  172 (636)
T KOG1501|consen  140 VREDFDTELIGEGALPSLQHAHDMLLVDNCKTV  172 (636)
T ss_pred             hHhhhhhhhhccccchhHHHHHHHhcccCCeec
Confidence            54332   122334556777774 677777665

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.97  E-value=0.025  Score=50.59  Aligned_cols=89  Identities=17%  Similarity=0.324  Sum_probs=56.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+..+++..++|.=-|.|+.+..+....+..+++|+|.++.++..++  +.+       .....++.+++++|
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~--~~l-------~~~~~r~~~~~~~F   78 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK--ERL-------KKFDDRFIFIHGNF   78 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH--CCT-------CCCCTTEEEEES-G
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH--HHH-------hhccceEEEEeccH
Confidence            356788888899999999999999999999998876667999999997444433  111       11135899999999


Q ss_pred             CCCcc--cc--cccceEEEEEe
Q psy17227        123 LTEEH--RE--KITQASIVFVN  140 (268)
Q Consensus       123 ~~l~~--~~--~~~d~dvv~~~  140 (268)
                      .+++-  ..  ....+|.|++.
T Consensus        79 ~~l~~~l~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   79 SNLDEYLKELNGINKVDGILFD  100 (310)
T ss_dssp             GGHHHHHHHTTTTS-EEEEEEE
T ss_pred             HHHHHHHHHccCCCccCEEEEc
Confidence            88651  11  22345666654

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.92  E-value=0.018  Score=48.41  Aligned_cols=55  Identities=25%  Similarity=0.433  Sum_probs=37.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHH
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA   95 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a   95 (268)
                      ......+++++... ..+|+.|||-=||+|..+. +|...|.. .+|+|+++....+|
T Consensus       175 ~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~-aa~~l~R~-~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  175 QKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAV-AAEELGRR-YIGIEIDEEYCEIA  229 (231)
T ss_dssp             -S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHH-HHHHTT-E-EEEEESSHHHHHHH
T ss_pred             cCCHHHHHHHHHhh-hccceeeehhhhccChHHH-HHHHcCCe-EEEEeCCHHHHHHh
Confidence            34455667777665 5789999999999999997 46667776 99999999654444

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.74  E-value=0.041  Score=52.69  Aligned_cols=38  Identities=18%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      +..++.+|+=+|||. |..++..|+..|+. |+++|.++.
T Consensus       161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~~~~  199 (509)
T PRK09424        161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDTRPE  199 (509)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence            356899999999997 44577778888985 999999985

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.72  E-value=0.039  Score=43.54  Aligned_cols=81  Identities=12%  Similarity=0.037  Sum_probs=47.1

Q ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-c---------CHHH
Q psy17227         81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-P---------TVDH  150 (268)
Q Consensus        81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-~---------~~~~  150 (268)
                      +|+|.||.+.++..  .++++    ++.+. ..++++++.+=+++.-.-....+|+++.|.-+.+ .         ....
T Consensus         1 kVyaFDIQ~~Ai~~--T~~rL----~~~~~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~   73 (140)
T PF06962_consen    1 KVYAFDIQEEAIEN--TRERL----EEAGL-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLK   73 (140)
T ss_dssp             EEEEEES-HHHHHH--HHHHH----HHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHH
T ss_pred             CEEEEECHHHHHHH--HHHHH----HhcCC-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHH
Confidence            48999999863332  33333    33443 2489999998877662111123566666643322 1         1345


Q ss_pred             HHHHHHhcCCCCcEEEEe
Q psy17227        151 ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       151 ~l~e~~r~LkpGG~~i~~  168 (268)
                      +++.+.+.|+|||++++.
T Consensus        74 Al~~al~lL~~gG~i~iv   91 (140)
T PF06962_consen   74 ALEAALELLKPGGIITIV   91 (140)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhccCCEEEEE
Confidence            678888999999999875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2798|consensus

Probab=95.70  E-value=0.021  Score=50.75  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHH------------HH-------Hhcc-----
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRW------------MQ-------WYGK-----  110 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~------------~~-------~~~~-----  110 (268)
                      .-++|--|||.|+++..+|.. |.. +-|=|.|-.|.-... +....+..            +.       ....     
T Consensus       151 ki~iLvPGaGlGRLa~dla~~-G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACL-GFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             CceEEecCCCchhHHHHHHHh-ccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            457999999999999999874 665 788888876433332 22111100            00       0000     


Q ss_pred             -------ccccEEEEEcCCCCCc-ccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        111 -------RHGEFRLVKGDFLTEE-HREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       111 -------~~~~i~~~~gD~~~l~-~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                             ..+..+.-.|||.+.- -.....+.|+|...-+. ...+....+.-|+.+|||||.-|=
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence                   0012333447765532 11111234455443121 123467778999999999998774

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.59  E-value=0.039  Score=47.65  Aligned_cols=78  Identities=13%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.+..+|+|||||.==++..+....+...++|+||+..++.+-.      +.....+   .+.++...|...-+..   .
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~------~~l~~l~---~~~~~~v~Dl~~~~~~---~  170 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN------AFLAVLG---VPHDARVRDLLSDPPK---E  170 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH------HHHHHTT----CEEEEEE-TTTSHTT---S
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH------HHHHhhC---CCcceeEeeeeccCCC---C
Confidence            45578999999999999887766554446999999986443322      2222222   4778888898875432   2


Q ss_pred             ceEEEEEecc
Q psy17227        133 QASIVFVNNF  142 (268)
Q Consensus       133 d~dvv~~~~~  142 (268)
                      ..|+.++.-+
T Consensus       171 ~~DlaLllK~  180 (251)
T PF07091_consen  171 PADLALLLKT  180 (251)
T ss_dssp             EESEEEEET-
T ss_pred             CcchhhHHHH
Confidence            4567766444

>KOG2198|consensus

Probab=95.48  E-value=0.12  Score=46.94  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc----EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCK----ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~----~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .|+++||++|||+..-.|+=+..+....-..    .|++=|.++.  ++....+.+++      ....++.+...|+...
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~--R~~~L~~q~~~------l~~~~~~v~~~~~~~~  221 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK--RLNMLVHQLKR------LPSPNLLVTNHDASLF  221 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHH--HHHHHHHHHhc------cCCcceeeecccceec
Confidence            4688999999999999999998776654322    5899999874  33332232321      1124566666666555


Q ss_pred             ccc---c----cccceEEEEEecccc-------CcCH-----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHR---E----KITQASIVFVNNFAF-------GPTV-----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~---~----~~~d~dvv~~~~~~~-------~~~~-----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |-.   +    ....+|=|++...|-       .++.                 ...+..-++.||+||++|-+
T Consensus       222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS  295 (375)
T KOG2198|consen  222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS  295 (375)
T ss_pred             cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence            421   0    111244555543321       1111                 11245666899999999844

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=95.44  E-value=0.032  Score=44.21  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +...+.+..--+|. |||+|=|+|+.--++-..++...++.+|-.-.        .+-       ....+.-.++.||+.
T Consensus        18 L~~a~~~v~~~~G~-VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~--------~hp-------~~~P~~~~~ilGdi~   81 (160)
T PF12692_consen   18 LNWAAAQVAGLPGP-VLELGLGNGRTYDHLREIFPDRRIYVFDRALA--------CHP-------SSTPPEEDLILGDIR   81 (160)
T ss_dssp             HHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS----------S-G-------GG---GGGEEES-HH
T ss_pred             HHHHHHHhcCCCCc-eEEeccCCCccHHHHHHhCCCCeEEEEeeecc--------cCC-------CCCCchHheeeccHH
Confidence            34455565555665 99999999999999888888888999998632        000       011234568999987


Q ss_pred             C-CcccccccceEEEEEecc--ccCcCHHHH----HHHH-HhcCCCCcEEEEeCCCC
Q psy17227        124 T-EEHREKITQASIVFVNNF--AFGPTVDHA----LKER-FQDLKDGARIVSSKSFC  172 (268)
Q Consensus       124 ~-l~~~~~~~d~dvv~~~~~--~~~~~~~~~----l~e~-~r~LkpGG~~i~~~~~~  172 (268)
                      + +|. -..+-..+.+++.=  .+.++...+    +..+ ..+|.|||.+++..++.
T Consensus        82 ~tl~~-~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   82 ETLPA-LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             HHHHH-HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             HHhHH-HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            6 443 11223335555432  244444443    3333 36999999999975554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.35  E-value=0.19  Score=42.64  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      +.+.++.||||=-|.+..++.+...+..++..|+++.+...|.  ++.+    ..++ .++++..++|-.. ++..+ ..
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~--~~v~----~~~l-~~~i~vr~~dgl~-~l~~~-d~   85 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAI--RNVK----KNNL-SERIDVRLGDGLA-VLELE-DE   85 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHH--HHHH----hcCC-cceEEEeccCCcc-ccCcc-CC
Confidence            4455699999999999999999888888999999998666553  4433    2333 3589999999843 23221 12


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      +|++++... -..-....+.+-.+.|+.=-++|.
T Consensus        86 ~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          86 IDVIVIAGM-GGTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             cCEEEEeCC-cHHHHHHHHHHhhhhhcCcceEEE
Confidence            345544322 112233334444445543234554

>KOG1122|consensus

Probab=95.30  E-value=0.18  Score=46.68  Aligned_cols=69  Identities=10%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      .+..+||.+|||+.|-.|+=+-++|...+. ..|++.|.+..  ++.....++.    ..|  ..+.-..+.|...+|
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~----rlG--v~ntiv~n~D~~ef~  305 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLH----RLG--VTNTIVSNYDGREFP  305 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHH----HhC--CCceEEEccCccccc
Confidence            456789999999999999998888876543 35899999986  3433333333    234  347788888988765

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.25  E-value=0.48  Score=40.16  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCc--EEEEEeCCCChhHHHHHH------HHHHHH---------------------
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCK--ICWGVEKADLPAKYAEMH------TVFKRW---------------------  104 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~--~v~GiD~s~~~~~~a~~~------~~~~~~---------------------  104 (268)
                      +..-++.|-.||.|.++--+...++..  .|+|-|++++++.+|+.+      +-++++                     
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            345589999999999987777665543  689999999887777521      001110                     


Q ss_pred             --------HHHhccccccEEEEEcCCCCCcc---cccccceEEEEEeccc----cCcC------HHHHHHHHHhcCCCCc
Q psy17227        105 --------MQWYGKRHGEFRLVKGDFLTEEH---REKITQASIVFVNNFA----FGPT------VDHALKERFQDLKDGA  163 (268)
Q Consensus       105 --------~~~~~~~~~~i~~~~gD~~~l~~---~~~~~d~dvv~~~~~~----~~~~------~~~~l~e~~r~LkpGG  163 (268)
                              ....|. .....+.++|+++...   .+..+..|+|+....+    .|..      ..+.|..++.+|.+++
T Consensus       130 sA~RL~~~l~~~g~-~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s  208 (246)
T PF11599_consen  130 SADRLRERLAAEGG-DEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS  208 (246)
T ss_dssp             HHHHHHHHHHHTTS-S--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred             HHHHHHHHHHhcCC-CCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence                    011121 2357899999998432   1222345777765332    3332      3445778889995556


Q ss_pred             EEEEe
Q psy17227        164 RIVSS  168 (268)
Q Consensus       164 ~~i~~  168 (268)
                      +++++
T Consensus       209 VV~v~  213 (246)
T PF11599_consen  209 VVAVS  213 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66564

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG0822|consensus

Probab=95.20  E-value=0.074  Score=50.43  Aligned_cols=100  Identities=22%  Similarity=0.256  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCCHHHHH---HHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         57 DVFVDLGSGVGQVVLQ---VAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~---la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++=+|.|-|-+...   +|.....+ ++++||-+|.++..-++ .+.+    ..   ..+|+++.+|+++++-+  ..
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~----~W---~~~Vtii~~DMR~w~ap--~e  438 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFE----CW---DNRVTIISSDMRKWNAP--RE  438 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchh----hh---cCeeEEEeccccccCCc--hh
Confidence            4578899999987543   44444332 57999999985443322 1111    11   35899999999998843  34


Q ss_pred             ceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEE
Q psy17227        133 QASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIV  166 (268)
Q Consensus       133 d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i  166 (268)
                      .+|+++++.. .|..+  -..+|.-+-+.|||.|+.|
T Consensus       439 q~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  439 QADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             hccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            6788887644 34332  3567888889999999887

>KOG2793|consensus

Probab=95.14  E-value=0.25  Score=42.87  Aligned_cols=108  Identities=12%  Similarity=0.007  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc---ccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE---HREKI  131 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~---~~~~~  131 (268)
                      ....||++|+|+|-.++.+|...+.. ++--|+......+.   .+........+.-...+....-+=.+.+   +..+.
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~-v~ltD~~~~~~~L~---~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAE-VVLTDLPKVVENLK---FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcce-eccCCchhhHHHHH---HhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence            45679999999998888777666665 67777766432322   2211110011100013333333322221   11111


Q ss_pred             cceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        132 TQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       132 ~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                       .+|++++.. ++........+.-+...|-.++.+.+
T Consensus       162 -~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l  197 (248)
T KOG2793|consen  162 -PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL  197 (248)
T ss_pred             -cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence             045665544 44444566666666666766775444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.13  E-value=0.048  Score=48.11  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV  137 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv  137 (268)
                      +|+|+-||.|++..-+. ..|...+.++|+++.+.      +.+++   +    .+. .++++|+.++...+...++|++
T Consensus         2 ~v~dLFsG~Gg~~~gl~-~~G~~~v~a~e~~~~a~------~~~~~---N----~~~-~~~~~Di~~~~~~~~~~~~D~l   66 (275)
T cd00315           2 RVIDLFAGIGGFRLGLE-KAGFEIVAANEIDKSAA------ETYEA---N----FPN-KLIEGDITKIDEKDFIPDIDLL   66 (275)
T ss_pred             cEEEEccCcchHHHHHH-HcCCEEEEEEeCCHHHH------HHHHH---h----CCC-CCccCccccCchhhcCCCCCEE
Confidence            69999999999987654 45787789999998622      22221   1    112 2678899887633212457888


Q ss_pred             EEecc
Q psy17227        138 FVNNF  142 (268)
Q Consensus       138 ~~~~~  142 (268)
                      +....
T Consensus        67 ~~gpP   71 (275)
T cd00315          67 TGGFP   71 (275)
T ss_pred             EeCCC
Confidence            76543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.11  E-value=0.031  Score=50.42  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC----CCcccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL----TEEHRE  129 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~----~l~~~~  129 (268)
                      ...++||+|.|.|.-+..+-..++. ..++-++.|+.   +.+....+.+   ..+  .....+...|+.    .+|..+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~---lrkV~~tl~~---nv~--t~~td~r~s~vt~dRl~lp~ad  184 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA---LRKVGDTLAE---NVS--TEKTDWRASDVTEDRLSLPAAD  184 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH---HHHHHHHHHh---hcc--cccCCCCCCccchhccCCCccc
Confidence            3457999999999887543333443 24677777773   2221111111   111  112223333332    233221


Q ss_pred             cccceEEEEE-eccccCcC---HHHHHHHHHhcCCCCcEEEEeCCCCCCCc
Q psy17227        130 KITQASIVFV-NNFAFGPT---VDHALKERFQDLKDGARIVSSKSFCPLNF  176 (268)
Q Consensus       130 ~~~d~dvv~~-~~~~~~~~---~~~~l~e~~r~LkpGG~~i~~~~~~~~~~  176 (268)
                         .+|++++ +-+++...   ....++..+..+.|||.+++.+.-.|..|
T Consensus       185 ---~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf  232 (484)
T COG5459         185 ---LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF  232 (484)
T ss_pred             ---eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence               2344443 33333322   23357788899999999999877666655

>PHA01634 hypothetical protein

Probab=95.10  E-value=0.057  Score=41.85  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      .+.+|+|||.+.|.-+++++. .|+.+|++++.++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~k   62 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEK   62 (156)
T ss_pred             cCCEEEEecCCccchhhHHhh-cCccEEEEeccCHH
Confidence            567999999999999999876 48888999999996

>PRK11524 putative methyltransferase; Provisional

Probab=94.92  E-value=0.074  Score=47.09  Aligned_cols=51  Identities=27%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      .+.+++... -.+|+.|||-=||+|..+.. |.+.|.+ .+|+|++++...+|+
T Consensus       197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~A-A~~lgR~-~IG~Ei~~~Y~~~a~  247 (284)
T PRK11524        197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAV-AKASGRK-FIGIEINSEYIKMGL  247 (284)
T ss_pred             HHHHHHHHh-CCCCCEEEECCCCCcHHHHH-HHHcCCC-EEEEeCCHHHHHHHH
Confidence            445555544 47899999999999999974 6667877 899999997665554

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.92  E-value=0.21  Score=46.14  Aligned_cols=18  Identities=28%  Similarity=0.416  Sum_probs=14.7

Q ss_pred             CCEEEEEcCCCCHHHHHH
Q psy17227         56 DDVFVDLGSGVGQVVLQV   73 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~l   73 (268)
                      ..+|+|+|||+|..++.+
T Consensus        64 ~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             ceeEEEecCCCCccHHHH
Confidence            568999999999777544

>PRK13699 putative methylase; Provisional

Probab=94.84  E-value=0.18  Score=43.20  Aligned_cols=52  Identities=17%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ..+.+++... ..+|+.|||-=||+|..+.. |.+.|.. ++|+|+++....++.
T Consensus       151 ~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~a-a~~~~r~-~~g~e~~~~y~~~~~  202 (227)
T PRK13699        151 TSLQPLIESF-THPNAIVLDPFAGSGSTCVA-ALQSGRR-YIGIELLEQYHRAGQ  202 (227)
T ss_pred             HHHHHHHHHh-CCCCCEEEeCCCCCCHHHHH-HHHcCCC-EEEEecCHHHHHHHH
Confidence            3445566543 46899999999999999974 5567777 899999997555543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.81  E-value=0.24  Score=44.74  Aligned_cols=103  Identities=10%  Similarity=0.032  Sum_probs=57.9

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +...+..++++||=.|||. |.++..+|+..|..+|+++|.++....+++          +.|.. .-+.....|+.++.
T Consensus       162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----------~lGa~-~vi~~~~~~~~~~~  230 (343)
T PRK09880        162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----------EMGAD-KLVNPQNDDLDHYK  230 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----------HcCCc-EEecCCcccHHHHh
Confidence            4455667899999998863 445667778788866999999975222221          22321 00111111111111


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        .....+|+++-. .    .-...+....+.|++||+++..
T Consensus       231 --~~~g~~D~vid~-~----G~~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        231 --AEKGYFDVSFEV-S----GHPSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             --ccCCCCCEEEEC-C----CCHHHHHHHHHHhhcCCEEEEE
Confidence              111124666532 1    1124577788999999999976

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.79  E-value=0.2  Score=44.46  Aligned_cols=75  Identities=19%  Similarity=0.369  Sum_probs=59.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .+.+.++.|.++++...+|.=-|.|+.+..+..+.+.. +++|+|.++.++..|+  +.+..    .   .+++++++++
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~--~~l~~----~---~~r~~~v~~~   81 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAK--ERLKE----F---DGRVTLVHGN   81 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHH--HHhhc----c---CCcEEEEeCc
Confidence            45678999999999999999999999999999887643 4999999998555544  32221    1   2589999999


Q ss_pred             CCCCc
Q psy17227        122 FLTEE  126 (268)
Q Consensus       122 ~~~l~  126 (268)
                      |.++.
T Consensus        82 F~~l~   86 (314)
T COG0275          82 FANLA   86 (314)
T ss_pred             HHHHH
Confidence            98865

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.76  E-value=0.25  Score=45.09  Aligned_cols=105  Identities=18%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC-CCCC
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD-FLTE  125 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD-~~~l  125 (268)
                      .......++.+|+=+|||+ |-++..+|+..|..+|+.+|.+++...+|+  +.       .+  ...+.....+ ....
T Consensus       161 a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~--~~-------~g--~~~~~~~~~~~~~~~  229 (350)
T COG1063         161 AERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK--EA-------GG--ADVVVNPSEDDAGAE  229 (350)
T ss_pred             hhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH--Hh-------CC--CeEeecCccccHHHH
Confidence            3444455666999999998 555677888889999999999997333332  10       11  0111111111 0000


Q ss_pred             cccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .... +-.-+|+++-..-     ....+..+.+.++|||+++..
T Consensus       230 ~~~~t~g~g~D~vie~~G-----~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         230 ILELTGGRGADVVIEAVG-----SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             HHHHhCCCCCCEEEECCC-----CHHHHHHHHHHhcCCCEEEEE
Confidence            0000 0012566653211     345889999999999999876

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.61  E-value=0.51  Score=45.26  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh--CC--cEEEEEeCCCChhHHHHHHH
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT--GC--KICWGVEKADLPAKYAEMHT   99 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~--~~--~~v~GiD~s~~~~~~a~~~~   99 (268)
                      |+..+.|.-||+|++.....+..  +.  ..++|-+..+.+..++.|+.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm  265 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM  265 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence            66789999999999998655432  22  24799999998877777654

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.48  E-value=0.34  Score=43.02  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             HcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-
Q psy17227         50 QINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-  126 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-  126 (268)
                      ...+.++.+||..||| .|..++.+|+..|.. |++++.++..  .    +.++    ..|.     ..+..+-.. .. 
T Consensus       160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~~~s~~~--~----~~~~----~~g~-----~~~~~~~~~~~~~  223 (338)
T cd08254         160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEK--L----ELAK----ELGA-----DEVLNSLDDSPKD  223 (338)
T ss_pred             ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEcCCHHH--H----HHHH----HhCC-----CEEEcCCCcCHHH
Confidence            3457889999999987 488889999988887 8999988741  1    2221    1222     111111111 10 


Q ss_pred             -c-cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 -H-REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 -~-~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       . ......+|+++-..     .....+.++.+.|++||+++..
T Consensus       224 ~~~~~~~~~~D~vid~~-----g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         224 KKAAGLGGGFDVIFDFV-----GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HHHHhcCCCceEEEECC-----CCHHHHHHHHHHhhcCCEEEEE
Confidence             0 00112356665321     1135678889999999999975

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2671|consensus

Probab=94.44  E-value=0.036  Score=49.85  Aligned_cols=113  Identities=21%  Similarity=0.313  Sum_probs=70.2

Q ss_pred             ccccccCCCCCCCCcccCcHH-HHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH---
Q psy17227         22 PEKLNVYQPFSPFVYGETSFD-LISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE---   96 (268)
Q Consensus        22 ~~~~~~y~~~~~~~~g~~~~~-~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~---   96 (268)
                      .+.+..|+--....-|.++.+ .+.- +.++.-.+||+.|+|-=-|||++....| ++|+- |+|-||+-.++...+   
T Consensus       173 R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa-~FGa~-viGtDIDyr~vragrg~~  250 (421)
T KOG2671|consen  173 RELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAA-HFGAY-VIGTDIDYRTVRAGRGED  250 (421)
T ss_pred             HhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehh-hhcce-eeccccchheeecccCCC
Confidence            344444533332233444332 2333 3345578999999999999999998654 57887 999999976555221   


Q ss_pred             --HHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEec
Q psy17227         97 --MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNN  141 (268)
Q Consensus        97 --~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~  141 (268)
                        .+.++++    .|....-+.+..+|+.+.|.-.+ -.+|+|++..
T Consensus       251 ~si~aNFkQ----Yg~~~~fldvl~~D~sn~~~rsn-~~fDaIvcDP  292 (421)
T KOG2671|consen  251 ESIKANFKQ----YGSSSQFLDVLTADFSNPPLRSN-LKFDAIVCDP  292 (421)
T ss_pred             cchhHhHHH----hCCcchhhheeeecccCcchhhc-ceeeEEEeCC
Confidence              2334433    34333357889999998876544 2456777653

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.38  E-value=0.14  Score=47.32  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+-+|||.=||+|-=++..+++ .+..+|+.-|+|+.++.+.+  ++++    .++.....+++.+.|+..+=. .....
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~--~N~~----~N~~~~~~~~v~~~DAn~ll~-~~~~~  121 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK--RNLE----LNGLEDERIEVSNMDANVLLY-SRQER  121 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH--HHHH----HCT-SGCCEEEEES-HHHHHC-HSTT-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH--HhHh----hccccCceEEEehhhHHHHhh-hcccc
Confidence            4568999999999999999998 45668999999997554433  3332    344443369999999876432 12235


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|=+..+   -.+...+....+.+|.||.+.+|
T Consensus       122 fD~IDlDPf---GSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  122 FDVIDLDPF---GSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             EEEEEE--S---S--HHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEeCCC---CCccHhHHHHHHHhhcCCEEEEe
Confidence            678877655   45677888999999999999977

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2651|consensus

Probab=94.36  E-value=0.17  Score=46.25  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=35.5

Q ss_pred             HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCCh
Q psy17227         46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLP   91 (268)
Q Consensus        46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~   91 (268)
                      .++..+ ...+-+.|+|+|.|.|.++..++-.+|.. |.|||-|...
T Consensus       143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~ls-V~aIegsq~~  188 (476)
T KOG2651|consen  143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLS-VKAIEGSQRL  188 (476)
T ss_pred             HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCce-EEEeccchHH
Confidence            344444 33455789999999999999999888887 9999999653

>KOG3201|consensus

Probab=93.82  E-value=0.031  Score=45.09  Aligned_cols=118  Identities=10%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++..-+.-.|.+||++|-|.=.+ ++.+|...+...|.-.|-++..++--+  +-...   +.......+....-+...
T Consensus        20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~--ki~~~---n~~s~~tsc~vlrw~~~~   94 (201)
T KOG3201|consen   20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVE--KIRNS---NMASSLTSCCVLRWLIWG   94 (201)
T ss_pred             HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHH--HHHhc---ccccccceehhhHHHHhh
Confidence            344544555678999999996555 555566666667888999875333222  11110   000112244444444432


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      -........+|+|.+... +|..-....+.-|.+.|+|.|+.++.
T Consensus        95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen   95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            221111123566666544 45444555567778999999986653

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=93.80  E-value=0.14  Score=45.67  Aligned_cols=159  Identities=15%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             HHHHHHhhcCCccccccC-CCCCCC---CcccCcHHHHHHHHHHcCCC----------CCCEEEEEcCCCCHHHHHHHHH
Q psy17227         11 IQQTYNQSVTEPEKLNVY-QPFSPF---VYGETSFDLISRMIDQINAT----------PDDVFVDLGSGVGQVVLQVAAA   76 (268)
Q Consensus        11 ~~~~y~~~~~~~~~~~~y-~~~~~~---~~g~~~~~~~~~ll~~l~~~----------~~~~vLDiGCG~G~~~~~la~~   76 (268)
                      -.+.|..+-.+++.+.-| ..|++.   -|.+++ ..+..++..+...          +..+||-||-|.|.=...+|..
T Consensus        29 YnRDf~~AF~~~~~L~AYA~RWSPsRAL~Yaslf-~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~  107 (315)
T PF11312_consen   29 YNRDFAAAFGDEEKLEAYAARWSPSRALAYASLF-ASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAA  107 (315)
T ss_pred             hcchHHHHhCChhhhhhheeccCHHHHHHHHHHH-HHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHH
Confidence            334455566788888888 666652   222221 1222333333222          2358999999998766666655


Q ss_pred             hC-------C-------------cEEEEEeCCCChhHHHHHHHHHHHH------H-----HHhccccccEEEEEcCCCCC
Q psy17227         77 TG-------C-------------KICWGVEKADLPAKYAEMHTVFKRW------M-----QWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        77 ~~-------~-------------~~v~GiD~s~~~~~~a~~~~~~~~~------~-----~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +.       .             -.++.||+.+-...+.+....++..      .     .......-+++|.+.|+..+
T Consensus       108 ~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~  187 (315)
T PF11312_consen  108 FRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSL  187 (315)
T ss_pred             HhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccC
Confidence            50       0             1589999998644444422222210      0     00001112789999999887


Q ss_pred             ccccc--c-c--ceEEEE---EeccccCc---CHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        126 EHREK--I-T--QASIVF---VNNFAFGP---TVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       126 ~~~~~--~-~--d~dvv~---~~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      ..++-  . .  ..++|.   .-+-+|..   +-.+.|..+-..++||..+.+.|.
T Consensus       188 ~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  188 SEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             ChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence            64321  1 0  122332   11113333   344557777889999999998743

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.76  E-value=0.52  Score=44.03  Aligned_cols=98  Identities=18%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      .+..++...++ -+|++|+=+|||+ |..+...++..|+. |+.+|.++.  +...+    .    ..|.     +.+  
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~-ViV~d~d~~--R~~~A----~----~~G~-----~~~--  249 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR-VIVTEVDPI--CALQA----A----MEGY-----EVM--  249 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECChh--hHHHH----H----hcCC-----EEc--
Confidence            34556666554 5899999999997 55555666778885 899999985  22211    1    1221     111  


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHHH-HHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKE-RFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e-~~r~LkpGG~~i~~  168 (268)
                      +..     +....+|+|+..     ......+.. .++.+|+||+++..
T Consensus       250 ~~~-----e~v~~aDVVI~a-----tG~~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         250 TME-----EAVKEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             cHH-----HHHcCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEe
Confidence            111     111245677642     122345554 48999999999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.73  E-value=0.78  Score=41.25  Aligned_cols=95  Identities=12%  Similarity=0.074  Sum_probs=56.5

Q ss_pred             HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +...++++|++||=.||| .|.++..+|+..|.. +++++.++.  +.+.    ++    ..|..  .  ++  |..+..
T Consensus       158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~~~~~--~~~~----a~----~~Ga~--~--vi--~~~~~~  220 (329)
T TIGR02822       158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMTRGAA--ARRL----AL----ALGAA--S--AG--GAYDTP  220 (329)
T ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEeCChH--HHHH----HH----HhCCc--e--ec--cccccC
Confidence            345678899999999976 344567778888886 899999875  2211    11    23321  1  11  111111


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..  .+|+++....     ....+....+.|++||++++.
T Consensus       221 --~~--~~d~~i~~~~-----~~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       221 --PE--PLDAAILFAP-----AGGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             --cc--cceEEEECCC-----cHHHHHHHHHhhCCCcEEEEE
Confidence              11  1344432111     124688888999999999876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=93.60  E-value=0.37  Score=42.12  Aligned_cols=77  Identities=19%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATG-----CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ++-..++..++ .+...++|.|||.|.++.+++...+     ...++-||-.....+.       .+.++.... ...++
T Consensus         5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-------D~~~~~~~~-~~~~~   76 (259)
T PF05206_consen    5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-------DNKIRKDES-EPKFE   76 (259)
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-------hhhhhccCC-CCceE
Confidence            44455555554 5778899999999999999998773     3358999986542221       111111110 13577


Q ss_pred             EEEcCCCCCcc
Q psy17227        117 LVKGDFLTEEH  127 (268)
Q Consensus       117 ~~~gD~~~l~~  127 (268)
                      =+..|+.++.+
T Consensus        77 R~riDI~dl~l   87 (259)
T PF05206_consen   77 RLRIDIKDLDL   87 (259)
T ss_pred             EEEEEeeccch
Confidence            77788888753

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG1562|consensus

Probab=93.59  E-value=0.32  Score=43.10  Aligned_cols=110  Identities=14%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~  130 (268)
                      +...++||=||-|.|++.+..+++--...+.-+|++...+.+++  +.+...+  .|-..+++.+.-||-..+-  ...+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk--~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~  194 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSK--QYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKEN  194 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHH--HHhHHHh--cccCCCceEEEeccHHHHHHHhccC
Confidence            44567899999999999998887633445788888886455444  2333211  2334468999999976532  1133


Q ss_pred             ccceEEEEEecc-ccCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNF-AFGPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~-~~~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        .+|||+.... .-.|.    ....+.-+.+.|||||.+++.
T Consensus       195 --~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q  235 (337)
T KOG1562|consen  195 --PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ  235 (337)
T ss_pred             --CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence              3566776543 11222    122345566899999999865

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.36  E-value=1.2  Score=38.61  Aligned_cols=109  Identities=16%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCC----cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGC----KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH  127 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~----~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~  127 (268)
                      +..+.+++|+|+|+-.=++.+...+..    .+.+-||+|..   +-+  ..++...++..  .-.+.-++||++. +..
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~---iL~--~ta~ai~~~y~--~l~v~~l~~~~~~~La~  148 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSAS---ILR--ATATAILREYP--GLEVNALCGDYELALAE  148 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHH---HHH--HHHHHHHHhCC--CCeEeehhhhHHHHHhc
Confidence            344788999999999888777654433    35799999974   211  11222111221  1257778899863 111


Q ss_pred             cccccceEEEEEeccc--cCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFA--FGPTVDHA-LKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~--~~~~~~~~-l~e~~r~LkpGG~~i~~  168 (268)
                      ..+...--.+|..+.+  +.|+.... +..+..+|.||-.|.+-
T Consensus       149 ~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         149 LPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             ccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            1122222245555553  55665555 45666799999888764

>PTZ00357 methyltransferase; Provisional

Probab=93.34  E-value=0.36  Score=47.47  Aligned_cols=107  Identities=18%  Similarity=0.223  Sum_probs=63.0

Q ss_pred             EEEEEcCCCCHHHHH---HHHHhCCc-EEEEEeCCCChhHHHHHHH-HHHHHHHHhccccccEEEEEcCCCCCcccc---
Q psy17227         58 VFVDLGSGVGQVVLQ---VAAATGCK-ICWGVEKADLPAKYAEMHT-VFKRWMQWYGKRHGEFRLVKGDFLTEEHRE---  129 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~---la~~~~~~-~v~GiD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~---  129 (268)
                      .|+=+|+|-|-+...   +++..+.. ++++||-++..+.+...+. +.+.+........+.|+++..|++.+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999988544   44445554 6899999976433333221 111111000000246999999999975332   


Q ss_pred             ------cccceEEEEEecc-ccCcC--HHHHHHHHHhcCCC----CcE
Q psy17227        130 ------KITQASIVFVNNF-AFGPT--VDHALKERFQDLKD----GAR  164 (268)
Q Consensus       130 ------~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~Lkp----GG~  164 (268)
                            ....+|+++++.+ .|..+  --+.|.-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                  1125889988755 34433  23566666677765    665

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.23  E-value=0.72  Score=39.98  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             HHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCc--------EEEEEeCCCChhHH
Q psy17227         45 SRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCK--------ICWGVEKADLPAKY   94 (268)
Q Consensus        45 ~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~--------~v~GiD~s~~~~~~   94 (268)
                      ...++.++-. ..-+|+++|.|+|.++..+.......        +++-||.||.+...
T Consensus         7 ~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~   65 (252)
T PF02636_consen    7 AQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER   65 (252)
T ss_dssp             HHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred             HHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence            3455555422 23689999999999999988765432        68999999974443

; PDB: 4F3N_A 1ZKD_B.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.12  E-value=0.52  Score=35.27  Aligned_cols=88  Identities=15%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccccceEEEEE
Q psy17227         64 SGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKITQASIVFV  139 (268)
Q Consensus        64 CG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~~d~dvv~~  139 (268)
                      ||.|.++..+++..  +...++.+|.++.  ...    .++         ...+.++.||..+...-  .+..+++.+++
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~--~~~----~~~---------~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~   68 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPE--RVE----ELR---------EEGVEVIYGDATDPEVLERAGIEKADAVVI   68 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHH--HHH----HHH---------HTTSEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcH--HHH----HHH---------hcccccccccchhhhHHhhcCccccCEEEE
Confidence            77888988888753  3435999999985  111    111         12477999999986521  23345666665


Q ss_pred             eccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        140 NNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       140 ~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..  -.+.....+....|.+-|...+++.
T Consensus        69 ~~--~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   69 LT--DDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             ES--SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             cc--CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            31  1222333455666888888888864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.97  E-value=0.36  Score=41.92  Aligned_cols=122  Identities=18%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHH---hC--CcEEEEEeCCCChhH--------------------HHH
Q psy17227         44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAA---TG--CKICWGVEKADLPAK--------------------YAE   96 (268)
Q Consensus        44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~---~~--~~~v~GiD~s~~~~~--------------------~a~   96 (268)
                      +..+++..-  --||+ |++.||=.|+.++.++..   ++  .+++++.|-=+.+-.                    ++.
T Consensus        62 L~~~~~~v~~~~vpGd-ivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~  140 (248)
T PF05711_consen   62 LYQAVEQVLAEDVPGD-IVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV  140 (248)
T ss_dssp             HHHHHHHCCHTTS-SE-EEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred             HHHHHHHHHhcCCCeE-EEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence            344555542  23564 999999999987655432   22  346899986331100                    000


Q ss_pred             HHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227         97 MHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+..++.....|...++++++.|.+.+ +|- .+...+.++.+..=++ .....+|..++-.|.|||.+++-
T Consensus       141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~D  211 (248)
T PF05711_consen  141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFD  211 (248)
T ss_dssp             HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC--TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEES
T ss_pred             CHHHHHHHHHHcCCCcccEEEECCcchhhhcc-CCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEe
Confidence            1122222122233334589999999965 441 1112232333322112 23566788899899999999994

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.79  E-value=0.71  Score=41.81  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=54.1

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCC-ChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKAD-LPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      +..+|++||=+|||. |.++..+|+..|+. |++++.++ ...+.+    .++    ..|..  .+.....|..+  . .
T Consensus       169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~-vi~~~~~~~~~~~~~----~~~----~~Ga~--~v~~~~~~~~~--~-~  234 (355)
T cd08230         169 PTWNPRRALVLGAGPIGLLAALLLRLRGFE-VYVLNRRDPPDPKAD----IVE----ELGAT--YVNSSKTPVAE--V-K  234 (355)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCHHHHH----HHH----HcCCE--EecCCccchhh--h-h
Confidence            467899999999875 55677788888885 99999742 101211    111    22321  11111111111  0 0


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+++-..-     -...+.+..+.|++||++++.
T Consensus       235 ~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         235 LVGEFDLIIEATG-----VPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             hcCCCCEEEECcC-----CHHHHHHHHHHccCCcEEEEE
Confidence            1123455553211     123677888999999999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.79  E-value=0.86  Score=41.15  Aligned_cols=95  Identities=15%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             cCCCCCCEEEEEcCCCCH-HHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         51 INATPDDVFVDLGSGVGQ-VVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~-~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      +.+++|++||=+|||.=+ ++..+|+. .|..+|+++|.++.  +++.+    +    ..+    ....+ .+   +.  
T Consensus       159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~--k~~~a----~----~~~----~~~~~-~~---~~--  218 (341)
T cd08237         159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE--KLDLF----S----FAD----ETYLI-DD---IP--  218 (341)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh--HHHHH----h----hcC----ceeeh-hh---hh--
Confidence            456789999999986533 34455665 45555999999875  22211    1    111    11111 11   11  


Q ss_pred             ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.. .+|+++= .+ -.+.....+....+.|++||++++.
T Consensus       219 ~~~-g~d~viD-~~-G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         219 EDL-AVDHAFE-CV-GGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             hcc-CCcEEEE-CC-CCCccHHHHHHHHHhCcCCcEEEEE
Confidence            111 2456652 22 1111345788889999999999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.76  E-value=0.42  Score=47.42  Aligned_cols=112  Identities=21%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh-------C-----CcEEEEEeCCCCh-hHHHHHHH-------HHHHHHHH-----hc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT-------G-----CKICWGVEKADLP-AKYAEMHT-------VFKRWMQW-----YG  109 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-------~-----~~~v~GiD~s~~~-~~~a~~~~-------~~~~~~~~-----~~  109 (268)
                      +.-+|+|+|=|+|.......+.+       +     .-+++++|..|-. ..++++..       .+++....     .|
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999999776665444       1     1258999987631 12222211       11111111     01


Q ss_pred             c-----ccc--cEEEEEcCCCC-CcccccccceEEEEEeccc--cCcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        110 K-----RHG--EFRLVKGDFLT-EEHREKITQASIVFVNNFA--FGPTV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 ~-----~~~--~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~--~~~~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .     ..+  .+++..||+.+ ++--.  +.+|+++...+.  ..|++  ...|+.+.|.++|||+++++
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence            1     011  45678888865 22111  357889988763  44553  45689999999999999965

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.70  E-value=1.1  Score=40.71  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=58.3

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ....++.+|++||=.|||. |.++..+|+..|..+|+++|.++....++      +    ..|.   . .++...-.+..
T Consensus       169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~------~----~~Ga---~-~~i~~~~~~~~  234 (358)
T TIGR03451       169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA------R----EFGA---T-HTVNSSGTDPV  234 (358)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH------H----HcCC---c-eEEcCCCcCHH
Confidence            3445788999999999864 55677788888886699999987522221      1    1221   1 12211111110


Q ss_pred             --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ...  +...+|+++- .. -   -...+...++.+++||+++..
T Consensus       235 ~~i~~~~~~~g~d~vid-~~-g---~~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       235 EAIRALTGGFGADVVID-AV-G---RPETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             HHHHHHhCCCCCCEEEE-CC-C---CHHHHHHHHHHhccCCEEEEE
Confidence              000  1113566653 22 1   124567778899999999975

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.65  E-value=0.48  Score=43.23  Aligned_cols=110  Identities=10%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +++.++-.-..+|||-=||+|-=++.+|...+..+|+-=|+||.+..+.+  ++++.    +  ...+...++.|+..+=
T Consensus        44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik--~Nv~~----N--~~~~~~v~n~DAN~lm  115 (380)
T COG1867          44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIK--ENVRL----N--SGEDAEVINKDANALL  115 (380)
T ss_pred             HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHH--HHHHh----c--CcccceeecchHHHHH
Confidence            44444322267899999999999999999998877999999998666644  44442    1  1236667777876543


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .. +.+.+|+|=+..+   -.+...+...++..|.||.+.+|
T Consensus       116 ~~-~~~~fd~IDiDPF---GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         116 HE-LHRAFDVIDIDPF---GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             Hh-cCCCccEEecCCC---CCCchHHHHHHHHhhcCCEEEEE
Confidence            32 2245677766644   34566777888888999999877

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.63  E-value=0.89  Score=41.50  Aligned_cols=103  Identities=18%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +....+++++++||=.|+|. |.++..+|+..|..+|+++|.++....++      +    ..|.    -.++..+-.++
T Consensus       183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a------~----~~Ga----~~~i~~~~~~~  248 (371)
T cd08281         183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA------R----ELGA----TATVNAGDPNA  248 (371)
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH------H----HcCC----ceEeCCCchhH
Confidence            34556788999999999864 55567777888885599999987522221      1    1221    11221111111


Q ss_pred             c--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  .... ...+|+++-. .    .-...+....+.|++||+++..
T Consensus       249 ~~~i~~~~~~g~d~vid~-~----G~~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         249 VEQVRELTGGGVDYAFEM-A----GSVPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             HHHHHHHhCCCCCEEEEC-C----CChHHHHHHHHHHhcCCEEEEE
Confidence            0  0000 0124566531 1    1134677788999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=92.59  E-value=0.94  Score=40.46  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC---CCC
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD---FLT  124 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD---~~~  124 (268)
                      ..++..++.+||-.|||. |..+..+|+..|..++++++.++....+      ++    ..+.  .  .++..+   ..+
T Consensus       159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~------~~----~~g~--~--~vi~~~~~~~~~  224 (339)
T cd08232         159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV------AR----AMGA--D--ETVNLARDPLAA  224 (339)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH------HH----HcCC--C--EEEcCCchhhhh
Confidence            334444889999999886 7778888888888558999888742221      11    1221  1  122111   111


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  .....+|+++-...     ....+.+.++.|+++|+++..
T Consensus       225 ~~--~~~~~vd~vld~~g-----~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         225 YA--ADKGDFDVVFEASG-----APAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             hh--ccCCCccEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            11  11112566654211     134578889999999999975

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG0024|consensus

Probab=92.39  E-value=0.24  Score=44.44  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...+.++|.+||=+|+|+ |-.+...|+..|+.+|+.+|+++..+.+|+          ..|.+  .+......- ..
T Consensus       161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak----------~~Ga~--~~~~~~~~~-~~  227 (354)
T KOG0024|consen  161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAK----------KFGAT--VTDPSSHKS-SP  227 (354)
T ss_pred             hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH----------HhCCe--EEeeccccc-cH
Confidence            45667899999999999997 555666778899999999999997444433          13321  222222111 11


Q ss_pred             cc----cccc---cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EH----REKI---TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~----~~~~---~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.    -...   ..+|+.|-.     .-....++-....+|+||.++..
T Consensus       228 ~~~~~~v~~~~g~~~~d~~~dC-----sG~~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  228 QELAELVEKALGKKQPDVTFDC-----SGAEVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             HHHHHHHHhhccccCCCeEEEc-----cCchHHHHHHHHHhccCCEEEEe
Confidence            10    0000   114444432     23456677778899999998776

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=92.29  E-value=1.7  Score=39.23  Aligned_cols=103  Identities=21%  Similarity=0.335  Sum_probs=64.4

Q ss_pred             HHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +....++++|++||=.|  .|.|.+++++|+..|.. ++++.-+++  ..+        +++..|.. .-+.+...|+.+
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v~~~~s~~--k~~--------~~~~lGAd-~vi~y~~~~~~~  201 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VVAVVSSSE--KLE--------LLKELGAD-HVINYREEDFVE  201 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EEEEecCHH--HHH--------HHHhcCCC-EEEcCCcccHHH
Confidence            44456789999999998  57889999999999874 677777763  111        12234421 123333344322


Q ss_pred             C--cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E--EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      -  ..... ..+|+|+-.      --...+.+..+.|++||++++.
T Consensus       202 ~v~~~t~g-~gvDvv~D~------vG~~~~~~~l~~l~~~G~lv~i  240 (326)
T COG0604         202 QVRELTGG-KGVDVVLDT------VGGDTFAASLAALAPGGRLVSI  240 (326)
T ss_pred             HHHHHcCC-CCceEEEEC------CCHHHHHHHHHHhccCCEEEEE
Confidence            1  01111 236777742      2256677889999999999986

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.03  E-value=1.1  Score=40.53  Aligned_cols=103  Identities=18%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC--
Q psy17227         45 SRMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD--  121 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD--  121 (268)
                      -.+++.++.++|++|.=+|||. |-.++.-|+..|+.++++||+++.  +++.+    +    +.|    -.++++..  
T Consensus       175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~--Kl~~A----~----~fG----AT~~vn~~~~  240 (366)
T COG1062         175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE--KLELA----K----KFG----ATHFVNPKEV  240 (366)
T ss_pred             HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH--HHHHH----H----hcC----Cceeecchhh
Confidence            3578889999999999999985 556777788889999999999986  33221    1    233    33344332  


Q ss_pred             --CCCC--cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 --FLTE--EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 --~~~l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +-+.  ...+.  -+|..| +.    ......++..+..+.++|..++.
T Consensus       241 ~~vv~~i~~~T~g--G~d~~~-e~----~G~~~~~~~al~~~~~~G~~v~i  284 (366)
T COG1062         241 DDVVEAIVELTDG--GADYAF-EC----VGNVEVMRQALEATHRGGTSVII  284 (366)
T ss_pred             hhHHHHHHHhcCC--CCCEEE-Ec----cCCHHHHHHHHHHHhcCCeEEEE
Confidence              1110  01111  123332 11    12234777888888889998876

>KOG1099|consensus

Probab=91.84  E-value=0.5  Score=40.46  Aligned_cols=93  Identities=18%  Similarity=0.116  Sum_probs=61.4

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCC------c---EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGC------K---ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~------~---~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      .+++|+..-.|.-+..++++...      .   ++++||+.+- .                  ....|.-+++|+.+...
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a------------------PI~GV~qlq~DIT~~st  103 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A------------------PIEGVIQLQGDITSAST  103 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C------------------ccCceEEeecccCCHhH
Confidence            57999999999999888876422      1   2899999982 0                  12467788999988542


Q ss_pred             ccc------ccceEEEEEecc-----ccCcC-HHH------HHHHHHhcCCCCcEEEEe
Q psy17227        128 REK------ITQASIVFVNNF-----AFGPT-VDH------ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~------~~d~dvv~~~~~-----~~~~~-~~~------~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.      -..+|+|++...     +|.-| ..+      +|.-...+|||||.|+.-
T Consensus       104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            111      135788888653     45433 111      233334799999999863

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.50  E-value=1.3  Score=38.78  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +......++++||=+|+|. |.++..+|+..|..+|+.+|.++.-..++      +    ..|..    .++.  ..+..
T Consensus       113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a------~----~~Ga~----~~i~--~~~~~  176 (280)
T TIGR03366       113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA------L----SFGAT----ALAE--PEVLA  176 (280)
T ss_pred             HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH------H----HcCCc----EecC--chhhH
Confidence            4455667899999998853 44566677778887688998887422111      1    22221    1111  11110


Q ss_pred             --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ...  ....+|+++-. .    .-...+....+.|+|||+++..
T Consensus       177 ~~~~~~~~~~g~d~vid~-~----G~~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       177 ERQGGLQNGRGVDVALEF-S----GATAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             HHHHHHhCCCCCCEEEEC-C----CChHHHHHHHHHhcCCCEEEEe
Confidence              000  01135565531 1    1234677888999999999975

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG0022|consensus

Probab=91.44  E-value=0.43  Score=42.76  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~~  123 (268)
                      ..++..+++||+++.=.|+|.=++ .+.-|+..|+.+++|||++++  +.++++        ..|.    -+|++- |..
T Consensus       183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~--Kf~~ak--------~fGa----Te~iNp~d~~  248 (375)
T KOG0022|consen  183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD--KFEKAK--------EFGA----TEFINPKDLK  248 (375)
T ss_pred             hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH--HHHHHH--------hcCc----ceecChhhcc
Confidence            356777899999999999987554 555577789999999999986  443321        2332    233332 333


Q ss_pred             CCcccccc-----cceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        124 TEEHREKI-----TQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~-----~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      + |..+-.     ..+|.-| +    .....+.+++.+...+.| |.-++.
T Consensus       249 ~-~i~evi~EmTdgGvDysf-E----c~G~~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  249 K-PIQEVIIEMTDGGVDYSF-E----CIGNVSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             c-cHHHHHHHHhcCCceEEE-E----ecCCHHHHHHHHHHhhcCCCeEEEE
Confidence            3 221110     1122222 1    123457788888888888 776654

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.26  E-value=2.5  Score=37.48  Aligned_cols=99  Identities=21%  Similarity=0.332  Sum_probs=58.1

Q ss_pred             HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      ....+.++.+||-+||| .|..+..+|+..|.. +++++.++.  ..+    .++    ..|.   . .++..+-....-
T Consensus       156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~-v~~~~~~~~--~~~----~~~----~~g~---~-~~~~~~~~~~~~  220 (330)
T cd08245         156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFE-TVAITRSPD--KRE----LAR----KLGA---D-EVVDSGAELDEQ  220 (330)
T ss_pred             HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHH----HHH----HhCC---c-EEeccCCcchHH
Confidence            44678889999999997 788888888888886 899988874  211    111    1121   1 111111000000


Q ss_pred             cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . ....+|+++.. . -   -...+..+.+.|+++|+++..
T Consensus       221 ~-~~~~~d~vi~~-~-~---~~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         221 A-AAGGADVILVT-V-V---SGAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             h-ccCCCCEEEEC-C-C---cHHHHHHHHHhcccCCEEEEE
Confidence            0 01235566532 1 1   124677888999999999865

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.10  E-value=2  Score=36.39  Aligned_cols=37  Identities=30%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         53 ATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      +.++.+||..|+|. |..+..+++..|.. +++++.++.
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~-v~~~~~~~~  169 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAGAR-VIVTDRSDE  169 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHH
Confidence            47899999999995 77888888888865 899999874

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=91.00  E-value=0.69  Score=42.17  Aligned_cols=51  Identities=10%  Similarity=0.168  Sum_probs=37.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh--------CCcEEEEEeCCCChhH
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT--------GCKICWGVEKADLPAK   93 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~--------~~~~v~GiD~s~~~~~   93 (268)
                      .+..+++.++....-.+++||.|.|.++..+.+..        ...++.-||.|+....
T Consensus        65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~  123 (370)
T COG1565          65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA  123 (370)
T ss_pred             HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence            34456667776666789999999999998887654        2335899999996333

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.94  E-value=1.7  Score=39.40  Aligned_cols=100  Identities=21%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC-CC
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL-TE  125 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~-~l  125 (268)
                      ...++++|++||=.|+  |.|.++..+|+..|+. |++++.++.  ..+.    +++   ..|.   . .++..+-. ++
T Consensus       152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~-Vi~~~~~~~--k~~~----~~~---~lGa---~-~vi~~~~~~~~  217 (348)
T PLN03154        152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY-VVGSAGSSQ--KVDL----LKN---KLGF---D-EAFNYKEEPDL  217 (348)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHH--HHHH----HHH---hcCC---C-EEEECCCcccH
Confidence            4467889999999998  4888999999998986 899988864  2111    110   1232   1 12211100 11


Q ss_pred             c--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  .... ...+|+++-. .  .   ...+...++.|++||++++.
T Consensus       218 ~~~i~~~~~~gvD~v~d~-v--G---~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        218 DAALKRYFPEGIDIYFDN-V--G---GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HHHHHHHCCCCcEEEEEC-C--C---HHHHHHHHHHhccCCEEEEE
Confidence            1  0000 0135666632 2  1   24678888999999999975

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.93  E-value=0.033  Score=44.58  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=36.7

Q ss_pred             cEEEEEcCCCCCcccccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTEEHREKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.++|--....+|.++  ++|+|.++.+. |.  .+-..++++++|.|||||.+-++
T Consensus        30 ~vdlvc~As~e~~F~dn--s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          30 EVDLVCRASNESMFEDN--SVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             ccchhhhhhhhccCCCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            35555544455667665  46677776552 32  45667789999999999999886

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.69  E-value=1.4  Score=38.05  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=57.7

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      ...++.++++||=.|||. |..++.+|+..|..++++++.++....++      +    ..|. ...+  +...-...  
T Consensus        91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~------~----~~g~-~~~~--~~~~~~~~--  155 (277)
T cd08255          91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELA------E----ALGP-ADPV--AADTADEI--  155 (277)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHH------H----HcCC-Cccc--cccchhhh--
Confidence            456788999999999876 77778888888876689998887522111      1    1220 0111  10000000  


Q ss_pred             cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ....+|+++-...     ....+.+..+.|+++|+++..
T Consensus       156 --~~~~~d~vl~~~~-----~~~~~~~~~~~l~~~g~~~~~  189 (277)
T cd08255         156 --GGRGADVVIEASG-----SPSALETALRLLRDRGRVVLV  189 (277)
T ss_pred             --cCCCCCEEEEccC-----ChHHHHHHHHHhcCCcEEEEE
Confidence              1123566654211     134677888999999999864

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG2920|consensus

Probab=90.68  E-value=0.21  Score=43.91  Aligned_cols=36  Identities=11%  Similarity=0.025  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      -.+++|||+|||.|-..+.+... +...+...|.|..
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~  150 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAE  150 (282)
T ss_pred             ecCceeEecCCcccccchhhhhh-ccceeeeEecchh
Confidence            36889999999999999987664 4344888888864

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.66  E-value=0.66  Score=42.90  Aligned_cols=50  Identities=20%  Similarity=0.179  Sum_probs=38.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      .--++.|++.|+++||=|.+|-.+..-++++  +.++|++||+||.+..+-+
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALLE   74 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHHH
Confidence            4456778999999999999998888776544  3445999999997544444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.66  E-value=2.1  Score=39.96  Aligned_cols=98  Identities=21%  Similarity=0.322  Sum_probs=57.1

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      .+..++...++ ..|++|+=+|||. |......++..|+. |+.+|.++.  ....+    .    ..|     ..+.  
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~--r~~~A----~----~~G-----~~v~--  242 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI--RALEA----A----MDG-----FRVM--  242 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh--hHHHH----H----hcC-----CEeC--
Confidence            34445544443 5799999999997 44455556667886 999999984  11111    0    011     1111  


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHH-HHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALK-ERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~-e~~r~LkpGG~~i~~  168 (268)
                      +..     +-...+|+++..     ......+. +.+..+|+|++++..
T Consensus       243 ~le-----eal~~aDVVIta-----TG~~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       243 TME-----EAAKIGDIFITA-----TGNKDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             CHH-----HHHhcCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEE
Confidence            211     112245676542     12344554 477899999999875

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02740 Alcohol dehydrogenase-like

Probab=90.47  E-value=2.1  Score=39.23  Aligned_cols=43  Identities=23%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ....++++|++||=+|||. |.++..+|+..|..+|+++|.++.
T Consensus       191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE  234 (381)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence            3456788999999999863 444566777788755999999875

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=90.23  E-value=0.41  Score=42.52  Aligned_cols=68  Identities=19%  Similarity=0.334  Sum_probs=44.8

Q ss_pred             EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-ceEE
Q psy17227         58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT-QASI  136 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~-d~dv  136 (268)
                      +|+|+=||.|++..-+ ...|...+.++|+++.      +.+.++.   +    . . ...++|+.++... ... ++|+
T Consensus         2 ~~~dlFsG~Gg~~~g~-~~ag~~~~~a~e~~~~------a~~~y~~---N----~-~-~~~~~Di~~~~~~-~l~~~~D~   64 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGL-EQAGFEVVWAVEIDPD------ACETYKA---N----F-P-EVICGDITEIDPS-DLPKDVDL   64 (335)
T ss_dssp             EEEEET-TTTHHHHHH-HHTTEEEEEEEESSHH------HHHHHHH---H----H-T-EEEESHGGGCHHH-HHHHT-SE
T ss_pred             cEEEEccCccHHHHHH-HhcCcEEEEEeecCHH------HHHhhhh---c----c-c-ccccccccccccc-cccccceE
Confidence            7999999999999865 4467777899999986      2222222   1    1 2 8899999987632 222 5788


Q ss_pred             EEEecc
Q psy17227        137 VFVNNF  142 (268)
Q Consensus       137 v~~~~~  142 (268)
                      ++....
T Consensus        65 l~ggpP   70 (335)
T PF00145_consen   65 LIGGPP   70 (335)
T ss_dssp             EEEE--
T ss_pred             EEeccC
Confidence            876543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=90.10  E-value=0.53  Score=35.83  Aligned_cols=84  Identities=24%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc--cceEEEEEe
Q psy17227         65 GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI--TQASIVFVN  140 (268)
Q Consensus        65 G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~--~d~dvv~~~  140 (268)
                      |.|.++..+|+..|+ +|+++|.++.  +.    +.++    +.|.    -.++..+-.++.  ..+..  ..+|+++-.
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~--k~----~~~~----~~Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~   65 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEE--KL----ELAK----ELGA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDC   65 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHH--HH----HHHH----HTTE----SEEEETTTSSHHHHHHHHTTTSSEEEEEES
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHH--HH----HHHH----hhcc----cccccccccccccccccccccccceEEEEe
Confidence            468889999999995 5999999975  21    1121    2331    122222222211  11111  246676642


Q ss_pred             ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        141 NFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       141 ~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .    .....+......|+|||++++.
T Consensus        66 -~----g~~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   66 -V----GSGDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             -S----SSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -c----CcHHHHHHHHHHhccCCEEEEE
Confidence             1    2257888999999999999986

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG0023|consensus

Probab=89.96  E-value=1.8  Score=38.89  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             HHHHcCCCCCCEEEEEc-CCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         47 MIDQINATPDDVFVDLG-SGVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiG-CG~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      -+...++.||++|-=+| +|-|.++..+|+..|.+ |++||-+..
T Consensus       173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis~~~~  216 (360)
T KOG0023|consen  173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVISTSSK  216 (360)
T ss_pred             hhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEeCCch
Confidence            45677888999987777 45899999999999998 999999973

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=89.89  E-value=5  Score=33.57  Aligned_cols=104  Identities=20%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHH---HhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAA---ATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~---~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ++| +.|++.|+-.|+-++..|.   ..|. .+|+|+|++-.+..-+     +.        ..+.|.|+.|+-.++...
T Consensus        68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~-----a~--------e~p~i~f~egss~dpai~  133 (237)
T COG3510          68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA-----AR--------EVPDILFIEGSSTDPAIA  133 (237)
T ss_pred             cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh-----hh--------cCCCeEEEeCCCCCHHHH
Confidence            344 5799999999999887765   3452 2599999986422111     11        136899999999886421


Q ss_pred             c------cccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        129 E------KITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       129 ~------~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +      +...- +..+...-|. ......++-....|.-|-.+++-|+.
T Consensus       134 eqi~~~~~~y~k-IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         134 EQIRRLKNEYPK-IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             HHHHHHhcCCCc-EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence            1      11222 3333333232 22333333334678888888886443

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.86  E-value=3.5  Score=31.41  Aligned_cols=84  Identities=14%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+| +|++||-|.=.-.....++.|+. ++.+|+++.         +        +  ...++++..|+++.... -...
T Consensus        13 ~~g-kVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~---------~--------a--~~g~~~v~DDitnP~~~-iY~~   70 (129)
T COG1255          13 ARG-KVVEVGIGFFLDVAKRLAERGFD-VLATDINEK---------T--------A--PEGLRFVVDDITNPNIS-IYEG   70 (129)
T ss_pred             cCC-cEEEEccchHHHHHHHHHHcCCc-EEEEecccc---------c--------C--cccceEEEccCCCccHH-HhhC
Confidence            344 79999998665544444567888 999999983         0        1  13688999999985531 1124


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCC
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKD  161 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~Lkp  161 (268)
                      +|+|.+  +--.|++...+-.+.+.++-
T Consensus        71 A~lIYS--iRpppEl~~~ildva~aVga   96 (129)
T COG1255          71 ADLIYS--IRPPPELQSAILDVAKAVGA   96 (129)
T ss_pred             ccceee--cCCCHHHHHHHHHHHHhhCC
Confidence            566655  22456777777777776553

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.51  E-value=1.6  Score=38.97  Aligned_cols=44  Identities=23%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      .+..+++.+|++||=+|+|. |.++..+|+..|...|++++.++.
T Consensus       155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~  199 (339)
T cd08239         155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE  199 (339)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            34567888999999998753 344566777788876899988864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02494 adenosylhomocysteinase

Probab=89.44  E-value=1.8  Score=41.12  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             HHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      +..++...++ -.|++|+=+|+|. |......++.+|+. |+.+|.++.....+.          ..|     ..+.  +
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~-VIV~e~dp~r~~eA~----------~~G-----~~vv--~  302 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR-VIVTEIDPICALQAL----------MEG-----YQVL--T  302 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhhHHHH----------hcC-----Ceec--c
Confidence            3445544444 5689999999985 43444445567886 999999984111111          011     1121  2


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHA-LKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~-l~e~~r~LkpGG~~i~~  168 (268)
                      +.     +-...+|+++..     +..... ..+.++.+|||++++-.
T Consensus       303 le-----Eal~~ADVVI~t-----TGt~~vI~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        303 LE-----DVVSEADIFVTT-----TGNKDIIMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             HH-----HHHhhCCEEEEC-----CCCccchHHHHHhcCCCCCEEEEc
Confidence            21     112245677652     222233 37788999999999975

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=89.41  E-value=0.54  Score=42.26  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=43.2

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEE
Q psy17227         59 FVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVF  138 (268)
Q Consensus        59 vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~  138 (268)
                      |+|+-||.|++..-+- ..|...+.++|+++.+      .+.++.   +    .+. .++++|+.++...+ ..++|+++
T Consensus         1 vidLF~G~GG~~~Gl~-~aG~~~~~a~e~~~~a------~~ty~~---N----~~~-~~~~~Di~~~~~~~-~~~~dvl~   64 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFE-QAGFKCVFASEIDKYA------QKTYEA---N----FGN-KVPFGDITKISPSD-IPDFDILL   64 (315)
T ss_pred             CEEEecCccHHHHHHH-HcCCeEEEEEeCCHHH------HHHHHH---h----CCC-CCCccChhhhhhhh-CCCcCEEE
Confidence            6899999999997654 4688767899999852      222221   1    123 56678988875322 33567776


Q ss_pred             Ee
Q psy17227        139 VN  140 (268)
Q Consensus       139 ~~  140 (268)
                      ..
T Consensus        65 gg   66 (315)
T TIGR00675        65 GG   66 (315)
T ss_pred             ec
Confidence            54

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.25  E-value=3.7  Score=36.40  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      ...++.++.+||-+|+| .|..++.+|+..|+..++.++-++.  ..    +.++    ..+.   . .++..+-.+..-
T Consensus       153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~--~~----~~~~----~~g~---~-~~~~~~~~~~~~  218 (334)
T cd08234         153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEE--KL----ELAK----KLGA---T-ETVDPSREDPEA  218 (334)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HH----HHHH----HhCC---e-EEecCCCCCHHH
Confidence            55678899999999976 3777888888888766788888864  11    1111    1221   1 222222111100


Q ss_pred             --cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 --REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 --~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ......+|+++-...     ....+.++.+.|+++|+++..
T Consensus       219 ~~~~~~~~vd~v~~~~~-----~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         219 QKEDNPYGFDVVIEATG-----VPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             HHHhcCCCCcEEEECCC-----ChHHHHHHHHHHhcCCEEEEE
Confidence              001123566664211     135677888999999999865

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=89.09  E-value=3.1  Score=37.14  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             HcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--
Q psy17227         50 QINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--  126 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--  126 (268)
                      ..++.++.+||-.|+| .|..++.+|+..|...+++++.++.  ..    +.++    ..|.    -.++...-.++.  
T Consensus       162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~--~~----~~~~----~~g~----~~vi~~~~~~~~~~  227 (347)
T cd05278         162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPE--RL----DLAK----EAGA----TDIINPKNGDIVEQ  227 (347)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHH--HH----HHHH----HhCC----cEEEcCCcchHHHH
Confidence            3457789999998886 4778888899888645888877653  11    1111    1221    112211111110  


Q ss_pred             cc--ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HR--EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~--~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  .+...+|+++-. .  .  ....+.+..+.|+++|+++..
T Consensus       228 i~~~~~~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         228 ILELTGGRGVDCVIEA-V--G--FEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             HHHHcCCCCCcEEEEc-c--C--CHHHHHHHHHHhhcCCEEEEE
Confidence            00  011235666532 1  1  124678888999999999865

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK13699 putative methylase; Provisional

Probab=88.97  E-value=0.34  Score=41.49  Aligned_cols=19  Identities=37%  Similarity=0.408  Sum_probs=16.5

Q ss_pred             HHHHHHHHhcCCCCcEEEE
Q psy17227        149 DHALKERFQDLKDGARIVS  167 (268)
Q Consensus       149 ~~~l~e~~r~LkpGG~~i~  167 (268)
                      ...+.+++|+|||||.+++
T Consensus        52 ~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699         52 QPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             HHHHHHHHHHcCCCCEEEE
Confidence            4678999999999999885

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.95  E-value=3.6  Score=36.58  Aligned_cols=101  Identities=21%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-C
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-L  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~  123 (268)
                      +....++++|++||=.|.  |.|.++..+|+..|.. +++++-+++  ...    .+    +..|.   . .++..+- .
T Consensus       130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~-Vi~~~~s~~--~~~----~~----~~lGa---~-~vi~~~~~~  194 (325)
T TIGR02825       130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK-VVGAAGSDE--KVA----YL----KKLGF---D-VAFNYKTVK  194 (325)
T ss_pred             HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HHH----HH----HHcCC---C-EEEeccccc
Confidence            345567899999998883  6888999999988886 899988864  221    11    12332   1 1111111 0


Q ss_pred             CCc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.  ... ....+|+++- ..  .   ...+...++.|++||+++..
T Consensus       195 ~~~~~~~~~~~~gvdvv~d-~~--G---~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       195 SLEETLKKASPDGYDCYFD-NV--G---GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             cHHHHHHHhCCCCeEEEEE-CC--C---HHHHHHHHHHhCcCcEEEEe
Confidence            110  000 0013566663 22  1   23467888999999999975

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=88.91  E-value=0.2  Score=37.72  Aligned_cols=35  Identities=6%  Similarity=0.206  Sum_probs=26.3

Q ss_pred             eEEEEEecc---cc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNF---AF----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~---~~----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++.++   +|    +..+...|+.+++.|+|||.||+-
T Consensus         2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            477887665   22    133777899999999999999994

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.83  E-value=1.8  Score=38.91  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ....+.++++||=.|||. |.++..+|+..|...+++++.++.
T Consensus       154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~  196 (347)
T PRK10309        154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE  196 (347)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            445677899999999854 445667778888876789988874

>PLN02827 Alcohol dehydrogenase-like

Probab=88.51  E-value=3.2  Score=38.09  Aligned_cols=42  Identities=24%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ...++.+|++||=.|||. |.+++.+|+..|...++++|.++.
T Consensus       187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~  229 (378)
T PLN02827        187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE  229 (378)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            345788999999998753 445566777788866899998874

>PRK11524 putative methyltransferase; Provisional

Probab=88.49  E-value=0.4  Score=42.40  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             ccEEEEEcCCCCC--cccccccceEEEEEeccccC-----------------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        113 GEFRLVKGDFLTE--EHREKITQASIVFVNNFAFG-----------------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       113 ~~i~~~~gD~~~l--~~~~~~~d~dvv~~~~~~~~-----------------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.++++||+.+.  .++++  .+|+|+++..+..                 .-+...+.++.|+|||||.+++.
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~--siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSE--SVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCCEEEeccHHHHHHhcccC--cccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3567899998874  23343  4577887644321                 00235678999999999999864

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=88.47  E-value=1.6  Score=41.89  Aligned_cols=97  Identities=19%  Similarity=0.288  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCCC-HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC--------
Q psy17227         54 TPDDVFVDLGSGVG-QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT--------  124 (268)
Q Consensus        54 ~~~~~vLDiGCG~G-~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~--------  124 (268)
                      .++.+|+=+|||.= ..+..+++..|+. |+.+|.++.  .++.    ++    ..|     .+++.-|..+        
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~--rle~----a~----~lG-----a~~v~v~~~e~g~~~~gY  225 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPE--VKEQ----VQ----SMG-----AEFLELDFKEEGGSGDGY  225 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcC-----CeEEeccccccccccccc
Confidence            46789999999875 4466667777887 999999975  2221    11    122     2222222211        


Q ss_pred             ---C--c--------ccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEE
Q psy17227        125 ---E--E--------HREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       125 ---l--~--------~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i  166 (268)
                         +  +        +.+...++|+++....... +.+.-..+++.+.+|||+.++
T Consensus       226 a~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       226 AKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             eeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence               0  0        1222345788854433222 234345688899999999988

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=88.46  E-value=0.72  Score=37.31  Aligned_cols=102  Identities=16%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc-EEEEEcCCCC-Ccccccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE-FRLVKGDFLT-EEHREKITQ  133 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-i~~~~gD~~~-l~~~~~~~d  133 (268)
                      |++++=+|+..=.+=. +|.+.|+.+|.-||.++-  .+..   .++          .+ -++...|+.+ +.-....||
T Consensus         2 ~~~g~V~GS~~PwvEv-~aL~~GA~~iltveyn~L--~i~~---~~~----------dr~ssi~p~df~~~~~~y~~~fD   65 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEV-MALQHGAAKILTVEYNKL--EIQE---EFR----------DRLSSILPVDFAKNWQKYAGSFD   65 (177)
T ss_pred             CceEEEEecCCchhhH-HHHHcCCceEEEEeeccc--ccCc---ccc----------cccccccHHHHHHHHHHhhccch
Confidence            5778889988666544 456688888999998862  1111   010          11 1222223321 110112234


Q ss_pred             eEEEEEecccc-----------CcCHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        134 ASIVFVNNFAF-----------GPTVDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       134 ~dvv~~~~~~~-----------~~~~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      + +.+.+++-|           +....+.+.++.++|||||.+++.-|+.++
T Consensus        66 ~-~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d  116 (177)
T PF03269_consen   66 F-AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD  116 (177)
T ss_pred             h-hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence            3 222233322           112355677777899999999988777654

>KOG2360|consensus

Probab=88.22  E-value=1.1  Score=41.13  Aligned_cols=91  Identities=19%  Similarity=0.265  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      +.......++..+|.+|+|.-|-.|.=+.++|.... ..+++|.|.+.+  ..+.+++.+.    ..|  ...++.+++|
T Consensus       201 asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~--r~~tl~~~l~----~ag--~~~~~~~~~d  272 (413)
T KOG2360|consen  201 ASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAK--RAATLRKLLK----IAG--VSIVESVEGD  272 (413)
T ss_pred             hhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhH--HHHHHHHHHH----HcC--CCcccccccc
Confidence            334455567888899999999999999999988654 446999999986  4433444333    233  3467788999


Q ss_pred             CCCCcccccccceEEEEEec
Q psy17227        122 FLTEEHREKITQASIVFVNN  141 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~  141 (268)
                      +...+.++...++..+++..
T Consensus       273 f~~t~~~~~~~~v~~iL~Dp  292 (413)
T KOG2360|consen  273 FLNTATPEKFRDVTYILVDP  292 (413)
T ss_pred             ccCCCCcccccceeEEEeCC
Confidence            99866555555665566543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.09  E-value=4.7  Score=35.58  Aligned_cols=100  Identities=22%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             HHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         48 IDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        48 l~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ....++.+|++||=.|  .|.|.+++.+|+..|+. +++++-+++  ..    +.++    ..|.   . .++..+-.++
T Consensus       136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~-vi~~~~s~~--~~----~~l~----~~Ga---~-~vi~~~~~~~  200 (329)
T cd08294         136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCK-VIGCAGSDD--KV----AWLK----ELGF---D-AVFNYKTVSL  200 (329)
T ss_pred             HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HH----HHHH----HcCC---C-EEEeCCCccH
Confidence            3556788999999888  46788889999998986 899988864  11    1111    2232   1 1221111111


Q ss_pred             c--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ... ....+|+++- ..  .   ...+...++.|+++|+++..
T Consensus       201 ~~~v~~~~~~gvd~vld-~~--g---~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         201 EEALKEAAPDGIDCYFD-NV--G---GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             HHHHHHHCCCCcEEEEE-CC--C---HHHHHHHHHhhccCCEEEEE
Confidence            1  000 0023566653 11  1   24578889999999999865

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.84  E-value=3.6  Score=36.98  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +....++++++||=.||| .|..+..+|+..|...+++++.++....+++          ..|.    -.++..+-.++.
T Consensus       159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----------~~g~----~~~v~~~~~~~~  224 (351)
T cd08285         159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----------EYGA----TDIVDYKNGDVV  224 (351)
T ss_pred             HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----------HcCC----ceEecCCCCCHH
Confidence            345678889999999886 4566777888888866899999874222211          1221    111211111110


Q ss_pred             -----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 -----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 -----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                           +.. ...+|+++-. .  .  -...+.+..+.|+++|+++..
T Consensus       225 ~~i~~~~~-~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         225 EQILKLTG-GKGVDAVIIA-G--G--GQDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             HHHHHHhC-CCCCcEEEEC-C--C--CHHHHHHHHHHhhcCCEEEEe
Confidence                 111 1235666632 1  1  124678889999999999865

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.62  E-value=3.5  Score=36.91  Aligned_cols=100  Identities=20%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCC
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTE  125 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l  125 (268)
                      ...++++|++||=.|+  |.|.++..+|+..|.. +++++.++.  ....    +++   ..|..  .  ++. .+-.++
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~~--~~~~----~~~---~lGa~--~--vi~~~~~~~~  210 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSDE--KVDL----LKN---KLGFD--D--AFNYKEEPDL  210 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HHH---hcCCc--e--eEEcCCcccH
Confidence            4467899999999996  6788889999988986 899888764  1111    110   02321  1  121 110011


Q ss_pred             c--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ... ....+|+++-. .  .   ...+.+..+.|++||+++..
T Consensus       211 ~~~i~~~~~~gvd~v~d~-~--g---~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         211 DAALKRYFPNGIDIYFDN-V--G---GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             HHHHHHhCCCCcEEEEEC-C--C---HHHHHHHHHHhccCcEEEEe
Confidence            0  000 00235666632 1  1   25678889999999999975

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=87.52  E-value=2.1  Score=37.96  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         54 TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      .++++||=+|||. |.++..+|+..|+..++.+|.++.  +++.+    .        ..   .++  |..+.  ..  .
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~--rl~~a----~--------~~---~~i--~~~~~--~~--~  199 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR--RRDGA----T--------GY---EVL--DPEKD--PR--R  199 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHhh----h--------hc---ccc--Chhhc--cC--C
Confidence            4677899889763 556777888889886778887764  22111    0        00   011  11110  01  1


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+++-. .    .-...+...++.|+|||++++.
T Consensus       200 g~Dvvid~-~----G~~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       200 DYRAIYDA-S----GDPSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             CCCEEEEC-C----CCHHHHHHHHHhhhcCcEEEEE
Confidence            24556532 2    1134567888999999999975

>KOG0821|consensus

Probab=87.36  E-value=2.2  Score=36.43  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ...++++..+.-.++-|++||-|.|++++.+.. .+..+..-+++++..+---++...+         ...+..+..+|+
T Consensus        38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~-a~~~RL~vVE~D~RFip~LQ~L~EA---------a~~~~~IHh~D~  107 (326)
T KOG0821|consen   38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILN-ADVARLLVVEKDTRFIPGLQMLSEA---------APGKLRIHHGDV  107 (326)
T ss_pred             HHHHHHHhccccccceeEEecCCCCchhHHHHh-cchhheeeeeeccccChHHHHHhhc---------CCcceEEecccc
Confidence            446788888777778899999999999998765 4565678888887533322222211         234778888887


Q ss_pred             CCC
Q psy17227        123 LTE  125 (268)
Q Consensus       123 ~~l  125 (268)
                      ...
T Consensus       108 LR~  110 (326)
T KOG0821|consen  108 LRF  110 (326)
T ss_pred             cee
Confidence            654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=86.97  E-value=1.7  Score=41.22  Aligned_cols=97  Identities=10%  Similarity=0.083  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      -..|+|...|.|+++..+.. .+   |+-....|.. .-. .+..    +-+.|+    |-..+.=.+.+++...+  +|
T Consensus       366 iRNVMDMnAg~GGFAAAL~~-~~---VWVMNVVP~~-~~n-tL~v----IydRGL----IG~yhDWCE~fsTYPRT--YD  429 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALID-DP---VWVMNVVPVS-GPN-TLPV----IYDRGL----IGVYHDWCEAFSTYPRT--YD  429 (506)
T ss_pred             eeeeeeecccccHHHHHhcc-CC---ceEEEecccC-CCC-cchh----hhhccc----chhccchhhccCCCCcc--hh
Confidence            34699999999999976543 23   4444444320 000 0000    001222    11111112234433333  34


Q ss_pred             EEEEeccc----cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        136 IVFVNNFA----FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       136 vv~~~~~~----~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++-++.++    .--++...+.||-|+|+|||.+|+-
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence            55444331    2245788899999999999999996

; GO: 0008168 methyltransferase activity

>PRK10458 DNA cytosine methylase; Provisional

Probab=86.89  E-value=3.7  Score=39.07  Aligned_cols=60  Identities=17%  Similarity=0.129  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ..+++|+=||.|++..-+ ...|...|.++|+++.      +.+.++.   +.+ ..+....+++|+.++.
T Consensus        88 ~~~~iDLFsGiGGl~lGf-e~aG~~~v~a~Eid~~------A~~TY~~---N~~-~~p~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGF-EAIGGQCVFTSEWNKH------AVRTYKA---NWY-CDPATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHH-HHcCCEEEEEEechHH------HHHHHHH---HcC-CCCccceeccChhhCc
Confidence            558999999999999765 4457776899999975      2222321   111 0124456678887765

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=86.79  E-value=6.2  Score=35.19  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC---
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT---  124 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~---  124 (268)
                      ....+.++.+||-.|+|. |.++..+|+..|...+++++-++..      .+.++    ..|.    ..++..+-..   
T Consensus       153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~------~~~l~----~~g~----~~~~~~~~~~~~~  218 (343)
T cd08236         153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEK------LAVAR----ELGA----DDTINPKEEDVEK  218 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH------HHHHH----HcCC----CEEecCccccHHH
Confidence            355778899999999876 7788888888887668888887641      11221    1121    1122111111   


Q ss_pred             C-cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E-EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l-~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + ... +...+|+++-.     ......+..+.+.|+++|+++..
T Consensus       219 ~~~~~-~~~~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         219 VRELT-EGRGADLVIEA-----AGSPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             HHHHh-CCCCCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEE
Confidence            0 011 11135666642     11234677888999999999865

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.75  E-value=4.8  Score=37.84  Aligned_cols=89  Identities=20%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCC-CCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         52 NAT-PDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        52 ~~~-~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      ++. .|++|+=+|+|.=+ .+...++..|.. |+.+|.++..  ...    +.    ..|     .++.  ++.     +
T Consensus       207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~dp~r--a~~----A~----~~G-----~~v~--~l~-----e  263 (425)
T PRK05476        207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEVDPIC--ALQ----AA----MDG-----FRVM--TME-----E  263 (425)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCchh--hHH----HH----hcC-----CEec--CHH-----H
Confidence            544 78999999998633 333345556775 9999999851  111    00    011     1211  221     1


Q ss_pred             cccceEEEEEeccccCcCHHHHHH-HHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALK-ERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~-e~~r~LkpGG~~i~~  168 (268)
                      -...+|+++.. +    .....+. +.++.+|+|++++..
T Consensus       264 al~~aDVVI~a-T----G~~~vI~~~~~~~mK~GailiNv  298 (425)
T PRK05476        264 AAELGDIFVTA-T----GNKDVITAEHMEAMKDGAILANI  298 (425)
T ss_pred             HHhCCCEEEEC-C----CCHHHHHHHHHhcCCCCCEEEEc
Confidence            11245677642 1    2234564 678999999999865

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=86.44  E-value=3  Score=32.27  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      +..++++||-|.=.-.....+..|+. |+++|+.+.     .    +          ...+.++..|+.+..+. -..++
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~d-V~~tDi~~~-----~----a----------~~g~~~v~DDif~P~l~-iY~~a   71 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGFD-VIATDINPR-----K----A----------PEGVNFVVDDIFNPNLE-IYEGA   71 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS-E-EEEE-SS-S-----------------------STTEE---SSS--HH-HHTTE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCCc-EEEEECccc-----c----c----------ccCcceeeecccCCCHH-HhcCC
Confidence            33489999999766655555667887 999999984     1    0          13677999999985431 22367


Q ss_pred             EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|.+-  --.+++...+.++.+..  |.-++++
T Consensus        72 ~lIYSi--RPP~El~~~il~lA~~v--~adlii~  101 (127)
T PF03686_consen   72 DLIYSI--RPPPELQPPILELAKKV--GADLIIR  101 (127)
T ss_dssp             EEEEEE--S--TTSHHHHHHHHHHH--T-EEEEE
T ss_pred             cEEEEe--CCChHHhHHHHHHHHHh--CCCEEEE
Confidence            777652  23577788888877654  4666665

; PDB: 2K4M_A.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.39  E-value=12  Score=33.38  Aligned_cols=78  Identities=10%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHH--HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHH---HhCCcEE
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFD--LISRMIDQINATPDDVFVDLGSGVGQVVLQVAA---ATGCKIC   82 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~--~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~---~~~~~~v   82 (268)
                      -.++...|+.+..-+..++.=...+.   ++.+-.  .+......++.-++++|+=||||  .++..+++   ..+...|
T Consensus       131 ~~~L~~lf~~a~~~~k~vr~et~i~~---~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V  205 (311)
T cd05213         131 GKLLNRLFQKAIKVGKRVRTETGISR---GAVSISSAAVELAEKIFGNLKGKKVLVIGAG--EMGELAAKHLAAKGVAEI  205 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCC---CCcCHHHHHHHHHHHHhCCccCCEEEEECcH--HHHHHHHHHHHHcCCCEE
Confidence            34555556665554555543222221   122222  22333333444578999999985  44443333   3355668


Q ss_pred             EEEeCCCC
Q psy17227         83 WGVEKADL   90 (268)
Q Consensus        83 ~GiD~s~~   90 (268)
                      +.++.++.
T Consensus       206 ~v~~r~~~  213 (311)
T cd05213         206 TIANRTYE  213 (311)
T ss_pred             EEEeCCHH
Confidence            89998863

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.07  E-value=11  Score=33.61  Aligned_cols=101  Identities=18%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             HHcCCCCC--CEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         49 DQINATPD--DVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        49 ~~l~~~~~--~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ...+++++  ++||=.|+  |.|.+++.+|+..|+.+|++++-+++  +..    .+.+   ..|.  ..  ++..+-.+
T Consensus       146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~--~~~----~~~~---~lGa--~~--vi~~~~~~  212 (345)
T cd08293         146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE--KCQ----LLKS---ELGF--DA--AINYKTDN  212 (345)
T ss_pred             HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH--HHH----HHHH---hcCC--cE--EEECCCCC
Confidence            34456666  89988885  68888999999889845899988864  111    1111   1232  11  22211111


Q ss_pred             Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  ... ....+|+++- ..   ..  ..+.+.++.|++||+++..
T Consensus       213 ~~~~i~~~~~~gvd~vid-~~---g~--~~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         213 VAERLRELCPEGVDVYFD-NV---GG--EISDTVISQMNENSHIILC  253 (345)
T ss_pred             HHHHHHHHCCCCceEEEE-CC---Cc--HHHHHHHHHhccCCEEEEE
Confidence            11  000 0023566663 22   11  2357788999999999974

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.73  E-value=2.3  Score=41.80  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             CEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI  131 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~  131 (268)
                      ++|+=  ||.|.++..+++.   .+.. ++.||.+++  .+..    +++         .....+.||..+...-  .+.
T Consensus       401 ~~vII--~G~Gr~G~~va~~L~~~g~~-vvvID~d~~--~v~~----~~~---------~g~~v~~GDat~~~~L~~agi  462 (601)
T PRK03659        401 PQVII--VGFGRFGQVIGRLLMANKMR-ITVLERDIS--AVNL----MRK---------YGYKVYYGDATQLELLRAAGA  462 (601)
T ss_pred             CCEEE--ecCchHHHHHHHHHHhCCCC-EEEEECCHH--HHHH----HHh---------CCCeEEEeeCCCHHHHHhcCC
Confidence            34544  5556777766654   3455 999999985  2221    111         2467899999986532  233


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++++++.  ...++....+-...|.+.|...+++.
T Consensus       463 ~~A~~vv~~--~~d~~~n~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        463 EKAEAIVIT--CNEPEDTMKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             ccCCEEEEE--eCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            456666552  22333344455666778888888864

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=85.68  E-value=5.4  Score=35.51  Aligned_cols=100  Identities=20%  Similarity=0.179  Sum_probs=58.1

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      ....+.++++||-.|+|. |..++.+|+..|.. ++++.-++.  ..    +.++    ..+.    -+++...-.++. 
T Consensus       153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~s~~--~~----~~~~----~~g~----~~v~~~~~~~~~~  217 (337)
T cd08261         153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDIDDE--RL----EFAR----ELGA----DDTINVGDEDVAA  217 (337)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECCCHH--HH----HHHH----HhCC----CEEecCcccCHHH
Confidence            456788999999999874 77888899988887 888877753  11    1111    1221    112211111110 


Q ss_pred             -c--cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 -H--REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 -~--~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +  ..+...+|+++-...     -...+.++++.|+++|+++..
T Consensus       218 ~l~~~~~~~~vd~vld~~g-----~~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         218 RLRELTDGEGADVVIDATG-----NPASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             HHHHHhCCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence             0  001122566654211     134578889999999999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=85.63  E-value=11  Score=34.36  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCCcccc
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTEEHRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l~~~~  129 (268)
                      .+++|++||=.|||. |.++..+|+..|.. ++.++.++.  +...   .++    ..|.    -.++. .+...+.  .
T Consensus       180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~~~~--~~~~---~~~----~~Ga----~~vi~~~~~~~~~--~  243 (360)
T PLN02586        180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISSSSN--KEDE---AIN----RLGA----DSFLVSTDPEKMK--A  243 (360)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcc--hhhh---HHH----hCCC----cEEEcCCCHHHHH--h
Confidence            356899999899863 55567778888876 888888764  1111   111    1221    11111 1100110  1


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+++- ..    .-...+.+..+.|++||+++..
T Consensus       244 ~~~~~D~vid-~~----g~~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        244 AIGTMDYIID-TV----SAVHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             hcCCCCEEEE-CC----CCHHHHHHHHHHhcCCcEEEEe
Confidence            0112456653 22    1124677888999999999865

>KOG1098|consensus

Probab=85.26  E-value=0.94  Score=44.00  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCC
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKAD   89 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~   89 (268)
                      +.++..||||||-+|+-+--+++..|.. -|+|||+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            6788899999999999998777766654 589999987

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=85.11  E-value=7.8  Score=35.19  Aligned_cols=102  Identities=16%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ....++.++++||=.|+|. |..++.+|+..|...+++++.++.  +..    .++    ..|.    -.++..+-.++.
T Consensus       179 ~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~--k~~----~~~----~~g~----~~~i~~~~~~~~  244 (365)
T cd08278         179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDS--RLE----LAK----ELGA----THVINPKEEDLV  244 (365)
T ss_pred             hhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH--HHH----HHH----HcCC----cEEecCCCcCHH
Confidence            3445678899999998865 667778888889866999999874  211    111    1221    122221111110


Q ss_pred             --ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ... ....+|+++-. .  .  ....+..+.+.|+++|+++..
T Consensus       245 ~~v~~~~~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         245 AAIREITGGGVDYALDT-T--G--VPAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             HHHHHHhCCCCcEEEEC-C--C--CcHHHHHHHHHhccCCEEEEe
Confidence              000 01235565532 1  1  124577888999999999975

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=85.10  E-value=8.6  Score=34.39  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ....+.++.+||=.|+|. |..+..+|+..|...++.++-++.
T Consensus       156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~  198 (343)
T cd05285         156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPS  198 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            566788999999888876 777888888888765788877764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR00518 alaDH alanine dehydrogenase

Probab=85.06  E-value=1.3  Score=40.78  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++.+|+=+|+| .|..+...++..|+. |+.+|.++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~  201 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINID  201 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHH
Confidence            34569999998 456666667777886 999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=84.06  E-value=2.7  Score=40.02  Aligned_cols=86  Identities=17%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .|.+|+=+|+|. |......++.+|+. |+.+|.++.....+.          .     ..+++.  ++.     +-...
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a~~A~----------~-----~G~~~~--~le-----ell~~  309 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEIDPICALQAA----------M-----EGYQVV--TLE-----DVVET  309 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhHHHHH----------h-----cCceec--cHH-----HHHhc
Confidence            688999999997 44444445567886 999999874111110          0     112211  221     21224


Q ss_pred             eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+...     .....+ .+.+..+|||++++-+
T Consensus       310 ADIVI~at-----Gt~~iI~~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        310 ADIFVTAT-----GNKDIITLEHMRRMKNNAIVGNI  340 (476)
T ss_pred             CCEEEECC-----CcccccCHHHHhccCCCcEEEEc
Confidence            56776531     223344 4788999999999965

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=83.72  E-value=7.6  Score=35.25  Aligned_cols=43  Identities=21%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ....++.+|++||=.||| .|.++..+|+..|..+|++++.++.
T Consensus       177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~  220 (365)
T cd08277         177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINED  220 (365)
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            345678899999998875 2445566778888856999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.44  E-value=5.9  Score=38.51  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI  131 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~  131 (268)
                      ++++=+||  |..+..+++.   .|.. ++.||.+++  +..+    ++         ......++||..+...-  .+.
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~-vvvId~d~~--~~~~----~~---------~~g~~~i~GD~~~~~~L~~a~i  479 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIP-LVVIETSRT--RVDE----LR---------ERGIRAVLGNAANEEIMQLAHL  479 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCC-EEEEECCHH--HHHH----HH---------HCCCeEEEcCCCCHHHHHhcCc
Confidence            34555555  6666667764   3555 999999985  2221    11         13578999999985421  233


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++|.+++.  ...++....+-...|.+.|...++..
T Consensus       480 ~~a~~viv~--~~~~~~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        480 DCARWLLLT--IPNGYEAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             cccCEEEEE--cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence            456655542  12222333344445666777777763

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=82.14  E-value=2.6  Score=37.88  Aligned_cols=86  Identities=19%  Similarity=0.291  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .|.+|.=||.|. |.-....++.+|.+ |++.|.+...                   ....+.  ..+     +.+-...
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~~~~-------------------~~~~~~--~~~-----l~ell~~  196 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTSGKN-------------------KNEEYE--RVS-----LEELLKT  196 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCCccc-------------------cccCce--eec-----HHHHhhc
Confidence            578899999975 66555566667887 9999986420                   001111  112     2222235


Q ss_pred             eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+++.. ..++-...+ .+.+..+|||..||=+
T Consensus       197 sDvv~lh~P-lt~~T~~li~~~~~~~Mk~~a~lIN~  231 (311)
T PRK08410        197 SDIISIHAP-LNEKTKNLIAYKELKLLKDGAILINV  231 (311)
T ss_pred             CCEEEEeCC-CCchhhcccCHHHHHhCCCCeEEEEC
Confidence            678887544 223444445 5667999999999854

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=81.89  E-value=7.3  Score=34.46  Aligned_cols=141  Identities=15%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhcC-CccccccCCCCCCCCcccCcHHHHHH--HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEE
Q psy17227          8 RHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISR--MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWG   84 (268)
Q Consensus         8 ~~~~~~~y~~~~~-~~~~~~~y~~~~~~~~g~~~~~~~~~--ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~G   84 (268)
                      ++|+ +-|..++. .|.-+.+|+-...     +....+.+  ++..-+.-.|..|+=+| -.--.++.+|...-..++.-
T Consensus       108 ~dll-~kf~eiaK~RP~p~~~yDQgfv-----TpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaV  180 (354)
T COG1568         108 KDLL-EKFREIAKDRPEPLHQYDQGFV-----TPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAV  180 (354)
T ss_pred             HHHH-HHHHHHHhcCCCcchhcccccc-----cccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEE
Confidence            4444 44666665 5777778843332     22223333  23333445678899999 44444555444333456999


Q ss_pred             EeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHH----HhcC
Q psy17227         85 VEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKER----FQDL  159 (268)
Q Consensus        85 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~----~r~L  159 (268)
                      |||++..+.+      .++.+++.|  ..+++.+.-|..+ |+++. ...+|+++..    +|.....++-.    ...|
T Consensus       181 vDIDERli~f------i~k~aee~g--~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD----PpeTi~alk~FlgRGI~tL  247 (354)
T COG1568         181 VDIDERLIKF------IEKVAEELG--YNNIEAFVFDLRN-PLPEDLKRKFDVFITD----PPETIKALKLFLGRGIATL  247 (354)
T ss_pred             EechHHHHHH------HHHHHHHhC--ccchhheeehhcc-cChHHHHhhCCeeecC----chhhHHHHHHHHhccHHHh
Confidence            9999863333      333334455  3578999989987 33332 2356666653    33333444333    3467


Q ss_pred             CCC---cEEEEe
Q psy17227        160 KDG---ARIVSS  168 (268)
Q Consensus       160 kpG---G~~i~~  168 (268)
                      |.-   |.|-++
T Consensus       248 kg~~~aGyfgiT  259 (354)
T COG1568         248 KGEGCAGYFGIT  259 (354)
T ss_pred             cCCCccceEeee
Confidence            664   666665

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=81.88  E-value=3.1  Score=37.03  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHH
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEM   97 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~   97 (268)
                      +.+.+..|.+|+-||+|--++..++++ .+.. |..||+++..+.+.++
T Consensus        57 eam~~g~ghrivtigSGGcn~L~ylsr-~Pa~-id~VDlN~ahiAln~l  103 (414)
T COG5379          57 EAMQLGIGHRIVTIGSGGCNMLAYLSR-APAR-IDVVDLNPAHIALNRL  103 (414)
T ss_pred             HHHhcCCCcEEEEecCCcchHHHHhhc-CCce-eEEEeCCHHHHHHHHH
Confidence            445678899999999998888877766 4666 9999999975554443

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=81.65  E-value=15  Score=33.24  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +....++.++.+||-.||| .|..+..+|+..|...+++++-++.  +.    +.++    ..|.    -.++..+-.+.
T Consensus       174 ~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~--~~----~~~~----~~g~----~~vv~~~~~~~  239 (363)
T cd08279         174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPE--KL----ELAR----RFGA----THTVNASEDDA  239 (363)
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH--HH----HHHH----HhCC----eEEeCCCCccH
Confidence            3344577889999988886 5777788888888866889888764  11    1111    1221    12222211111


Q ss_pred             c--cc--ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HR--EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~--~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  +.  .....+|+++-. .    .....+.+..+.|+++|+++..
T Consensus       240 ~~~l~~~~~~~~vd~vld~-~----~~~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         240 VEAVRDLTDGRGADYAFEA-V----GRAATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             HHHHHHHcCCCCCCEEEEc-C----CChHHHHHHHHHhhcCCeEEEE
Confidence            0  00  001235555532 1    1134577889999999999865

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.63  E-value=4.2  Score=36.74  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-ce
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT-QA  134 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~-d~  134 (268)
                      ..+++|+=||.|++..-+. ..|..-+.++|+++.      +.+.++.   +    .+...++.+|+..+.-..-.. ++
T Consensus         3 ~~~~idLFsG~GG~~lGf~-~agf~~~~a~Eid~~------a~~ty~~---n----~~~~~~~~~di~~~~~~~~~~~~~   68 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFE-EAGFEIVFANEIDPP------AVATYKA---N----FPHGDIILGDIKELDGEALRKSDV   68 (328)
T ss_pred             CceEEeeccCCchHHHHHH-hcCCeEEEEEecCHH------HHHHHHH---h----CCCCceeechHhhcChhhccccCC
Confidence            3579999999999996554 457777899999986      2222221   1    122667788887654322111 67


Q ss_pred             EEEEEecc
Q psy17227        135 SIVFVNNF  142 (268)
Q Consensus       135 dvv~~~~~  142 (268)
                      |+++....
T Consensus        69 DvligGpP   76 (328)
T COG0270          69 DVLIGGPP   76 (328)
T ss_pred             CEEEeCCC
Confidence            78775433

>KOG2078|consensus

Probab=81.55  E-value=0.6  Score=43.39  Aligned_cols=64  Identities=19%  Similarity=0.325  Sum_probs=46.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++|..|.|+-||.|-+++.++++ +|. |++-|++++++.+-+.+-.++      -....+++....|+.+
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK-~cr-V~aNDLNpesik~Lk~ni~lN------kv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK-GCR-VYANDLNPESIKWLKANIKLN------KVDPSAIEIFNMDAKD  310 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc-CcE-EEecCCCHHHHHHHHHhcccc------ccchhheeeecccHHH
Confidence            578999999999999999998876 577 999999998666655322111      1122347777776643

>KOG1227|consensus

Probab=81.50  E-value=0.52  Score=41.85  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      .+..|+|+=.|-|.+++...-..|+..|.++|.+|..+..  .+.+++    ..+. ..+..++.||-...-+ +.  .+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa--LrR~~~----~N~V-~~r~~i~~gd~R~~~~-~~--~A  263 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA--LRRNAE----ANNV-MDRCRITEGDNRNPKP-RL--RA  263 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH--HHHHHH----hcch-HHHHHhhhccccccCc-cc--cc
Confidence            3578999999999999855555788889999999973322  222222    1121 2356677777765433 22  34


Q ss_pred             EEEEEeccccCcCHHHHHHHHHhcCCC-CcEEE-Ee
Q psy17227        135 SIVFVNNFAFGPTVDHALKERFQDLKD-GARIV-SS  168 (268)
Q Consensus       135 dvv~~~~~~~~~~~~~~l~e~~r~Lkp-GG~~i-~~  168 (268)
                      |-|....+   |.-++-..-..++||| ||-++ +.
T Consensus       264 drVnLGLl---PSse~~W~~A~k~Lk~eggsilHIH  296 (351)
T KOG1227|consen  264 DRVNLGLL---PSSEQGWPTAIKALKPEGGSILHIH  296 (351)
T ss_pred             hheeeccc---cccccchHHHHHHhhhcCCcEEEEe
Confidence            44444322   4444445556678888 45355 44

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=81.41  E-value=3.4  Score=33.71  Aligned_cols=90  Identities=20%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .|.+|.=||+|. |......++.+|+. |++.|.+.....      ...         ...++  ..++.+     -...
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~------~~~---------~~~~~--~~~l~e-----ll~~   91 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKPEE------GAD---------EFGVE--YVSLDE-----LLAQ   91 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHHHH------HHH---------HTTEE--ESSHHH-----HHHH
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCChhh------hcc---------cccce--eeehhh-----hcch
Confidence            588999999864 44444445557886 999999984111      011         01222  223322     1224


Q ss_pred             eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..... ++....+ .+.+..+|||..||-+
T Consensus        92 aDiv~~~~plt-~~T~~li~~~~l~~mk~ga~lvN~  126 (178)
T PF02826_consen   92 ADIVSLHLPLT-PETRGLINAEFLAKMKPGAVLVNV  126 (178)
T ss_dssp             -SEEEE-SSSS-TTTTTSBSHHHHHTSTTTEEEEES
T ss_pred             hhhhhhhhccc-cccceeeeeeeeeccccceEEEec
Confidence            67787654322 2333333 5677999999988854

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK10083 putative oxidoreductase; Provisional

Probab=81.02  E-value=13  Score=33.06  Aligned_cols=105  Identities=20%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +....++.+|++||=.|||. |..+..+|+. .|...+++++.++.-..++      +    ..|.. .-+.....++.+
T Consensus       152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~------~----~~Ga~-~~i~~~~~~~~~  220 (339)
T PRK10083        152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA------K----ESGAD-WVINNAQEPLGE  220 (339)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH------H----HhCCc-EEecCccccHHH
Confidence            34456788999999999642 2234445564 4877688898887411111      1    12321 001111111110


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .......++|+++- ..    .-...+.+..+.|++||+++..
T Consensus       221 -~~~~~g~~~d~vid-~~----g~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        221 -ALEEKGIKPTLIID-AA----CHPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             -HHhcCCCCCCEEEE-CC----CCHHHHHHHHHHhhcCCEEEEE
Confidence             01111123445543 22    1134678889999999999975

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=80.63  E-value=19  Score=33.31  Aligned_cols=43  Identities=14%  Similarity=0.095  Sum_probs=30.6

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      +...++.++++||=.|||. |.++..+|+..|...++.+|.++.
T Consensus       178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~  221 (393)
T TIGR02819       178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPA  221 (393)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            3446788899988888853 445566778788876677777764

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=80.49  E-value=4.5  Score=39.99  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             CEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI  131 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~  131 (268)
                      ++|+=+|||  .++..+++   ..+.. ++.||.+++  ++..    +++         .....+.||..+...-  .+.
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~-vvvID~d~~--~v~~----~~~---------~g~~v~~GDat~~~~L~~agi  462 (621)
T PRK03562        401 PRVIIAGFG--RFGQIVGRLLLSSGVK-MTVLDHDPD--HIET----LRK---------FGMKVFYGDATRMDLLESAGA  462 (621)
T ss_pred             CcEEEEecC--hHHHHHHHHHHhCCCC-EEEEECCHH--HHHH----HHh---------cCCeEEEEeCCCHHHHHhcCC
Confidence            567777775  45444554   33555 899999986  2221    111         2467899999987632  244


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++++++.  ...++.+..+-...|.+.|.-.+++.
T Consensus       463 ~~A~~vvv~--~~d~~~n~~i~~~ar~~~p~~~iiaR  497 (621)
T PRK03562        463 AKAEVLINA--IDDPQTSLQLVELVKEHFPHLQIIAR  497 (621)
T ss_pred             CcCCEEEEE--eCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            466666552  23334444555666777888777653

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=80.21  E-value=5.7  Score=35.69  Aligned_cols=89  Identities=17%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .|.+|.=||+|. |......++.+|.. |++.|.++..                    ...+... ....++.  +-...
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~--------------------~~~~~~~-~~~~~l~--e~l~~  190 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKS--------------------WPGVQSF-AGREELS--AFLSQ  190 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCC--------------------CCCceee-cccccHH--HHHhc
Confidence            467898899884 65555555567887 8999987530                    0011111 0111221  22235


Q ss_pred             eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++... ..++....+ .+.+..||||..||=+
T Consensus       191 aDvvv~~lP-lt~~T~~li~~~~l~~mk~ga~lIN~  225 (312)
T PRK15469        191 TRVLINLLP-NTPETVGIINQQLLEQLPDGAYLLNL  225 (312)
T ss_pred             CCEEEECCC-CCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence            677776433 223344444 5678899999887743

>PRK13243 glyoxylate reductase; Reviewed

Probab=80.11  E-value=2.2  Score=38.66  Aligned_cols=89  Identities=19%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .|.+|.=||+|. |......++.+|.. |++.|.++... .      ..    ..     .+.+  .+..     +-..+
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~-~------~~----~~-----~~~~--~~l~-----ell~~  204 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSRTRKPE-A------EK----EL-----GAEY--RPLE-----ELLRE  204 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCChh-h------HH----Hc-----CCEe--cCHH-----HHHhh
Confidence            578999999976 55444455567876 99999986411 0      00    00     1111  1221     22235


Q ss_pred             eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++... ..++....+ .+.+..+|||..||-+
T Consensus       205 aDiV~l~lP-~t~~T~~~i~~~~~~~mk~ga~lIN~  239 (333)
T PRK13243        205 SDFVSLHVP-LTKETYHMINEERLKLMKPTAILVNT  239 (333)
T ss_pred             CCEEEEeCC-CChHHhhccCHHHHhcCCCCeEEEEC
Confidence            678876533 223333344 5778889999988854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
3qow_A	426	Dot1l Structure In Complex With Sam Length = 426		8e-66
3sx0_A	421	Crystal Structure Of Dot1l In Complex With A Bromin		8e-66
3uwp_A	438	Crystal Structure Of Dot1l In Complex With 5-Iodotu		8e-66
1nw3_A	416	Structure Of The Catalytic Domain Of Human Dot1l, A		9e-66
4ek9_A	425	Crystal Structure Of Dot1l In Complex With Epz00000		9e-66
4er5_A	413	Crystal Structure Of Human Dot1l In Complex With 2		9e-66
3sr4_A	351	Crystal Structure Of Human Dot1l In Complex With A		1e-65
4er3_A	352	Crystal Structure Of Human Dot1l In Complex With In		1e-65
1u2z_A	433	Crystal Structure Of Histone K79 Methyltransferase		2e-10

>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam Length = 426

Iteration: 1
 Score =  246 bits (629), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 112 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 171
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 172 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 231
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 232 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 291
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 292 RNLSDIG 298

>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated Sah Analog Length = 421

Iteration: 1
 Score =  246 bits (629), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 283 RNLSDIG 289

>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With 5-Iodotubercidin Length = 438

Iteration: 1
 Score =  246 bits (629), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 120 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 179
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 180 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 300 RNLSDIG 306

>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A Non-Set Domain Nucleosomal Histone Methyltransferase Length = 416

Iteration: 1
 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 282 RNLSDIG 288

>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004 Length = 425

Iteration: 1
 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 111 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 170
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 171 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 230
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 231 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 290
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 291 RNLSDIG 297

>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2 Molecules Of Epz004777 Length = 413

Iteration: 1
 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGG 187
           RNL+D G
Sbjct: 283 RNLSDIG 289

>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A Selective Inhibitor Length = 351

Iteration: 1
 Score =  246 bits (628), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 6/202 (2%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281
Query: 181 RNLTDGGK-----KVPPGRGCV 197
           RNL+D G      ++ P +G V
Sbjct: 282 RNLSDIGTIMRVVELSPLKGSV 303

>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor Epz004777 Length = 352

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 6/202 (2%)
Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+F  
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62  XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
                          T CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGGK-----KVPPGRGCV 197
           RNL+D G      ++ P +G V
Sbjct: 283 RNLSDIGTIMRVVELSPLKGSV 304

>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p From Yeast Length = 433

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 4   RGLLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXXX 62
           R  +   +   Y +S+  +  KL  Y+ FS +VYGE   + +S +  Q      D F   
Sbjct: 190 RSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDL 249
Query: 63  XXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAEM-HTVFKRWMQWYGKR--HGEFRLVK 119
                          GC + +G E  D  +    + +   K+  + YG R  + EF L K
Sbjct: 250 GSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309
Query: 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRIT 179
                    E I Q  ++ VNNF F   ++  +++  Q  K G +I+S KS   L ++I 
Sbjct: 310 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQIN 369
Query: 180 DRNL 183
             N+
Sbjct: 370 FYNV 373
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	9e-76
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	8e-65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score =  236 bits (602), Expect = 9e-76
 Identities = 131/185 (70%), Positives = 155/185 (83%), Gaps = 1/185 (0%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+FVD
Sbjct: 120 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 179

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQVAAAT CK  +GVEKAD+PAKYAE M   F++WM+WYGK+H E+ L +G
Sbjct: 180 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299

Query: 181 RNLTD 185
           RNL+D
Sbjct: 300 RNLSD 304

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score =  207 bits (528), Expect = 8e-65
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 9/205 (4%)

Query: 2   PSRGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFV 60
             R  +   +   Y +S+  +  KL  Y+ FS +VYGE   + +S +  Q      D F+
Sbjct: 188 IPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFM 247

Query: 61  DLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRL-V 118
           DLGSGVG  V+Q A   GC + +G E  D  +      +   K+  + YG R       +
Sbjct: 248 DLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307

Query: 119 KGDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFR 177
           K  F+      E I Q  ++ VNNF F   ++  +++  Q  K G +I+S KS   L ++
Sbjct: 308 KKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQ 367

Query: 178 ITDRNLTDGG-----KKVPPGRGCV 197
           I   N+ +       ++       V
Sbjct: 368 INFYNVENIFNRLKVQRYDLKEDSV 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 63/291 (21%)

Query: 11  IQQTYNQS-------VTEPEKL-NVYQPFSP-FVYGETSFDLISRMIDQINATPDDVFVD 61
           I+    Q        + + ++L N  Q F+   V     +  + + + ++    + V +D
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLID 156

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121
              G G+  +   A   C             +      +F  W+      +         
Sbjct: 157 GVLGSGKTWV---ALDVCL--------SYKVQCKMDFKIF--WLN-LKNCNS-------- 194

Query: 122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSSKSFC-------- 172
              E   E + +       N+         +K R   ++    R++ SK +         
Sbjct: 195 --PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 173 --------PLNFR----IT--DRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTE 218
                     N      +T   + +TD           +D    +L+      +   + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 219 LEIPPTPAET----PYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEI 265
                 P E     P  L ++ + +R+  LA  +  K     K +   IE 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK-LTTIIES 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	100.0
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.92
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.8
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.79
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.77
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.76
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.76
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.76
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.74
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.73
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.73
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.72
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.72
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.71
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.7
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.7
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.7
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.7
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.7
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.69
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.68
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.68
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.68
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.67
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.67
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.67
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.67
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.67
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.66
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.66
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.66
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.65
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.65
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.65
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.64
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.64
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.64
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.63
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.62
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.62
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.62
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.62
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.61
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.61
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.61
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.61
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.61
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.6
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.6
3ocj_A	305	Putative exported protein; structural genomics, PS	99.6
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.6
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.6
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.59
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.59
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.59
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.59
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.59
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.59
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.58
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.58
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.58
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.58
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.58
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.58
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.58
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.58
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.57
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.57
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.57
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.57
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.56
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.56
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.56
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.56
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.56
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.56
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.55
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.55
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.55
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.55
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.55
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.55
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.55
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.55
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.55
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.55
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.55
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.54
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.54
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.54
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.54
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.54
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.54
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.53
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.53
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.53
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.52
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.52
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.52
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.52
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.52
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.52
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.51
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.51
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.51
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.51
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.51
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.5
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.5
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.5
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.5
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.5
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.49
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.49
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.49
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.49
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.49
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.49
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.48
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.48
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.48
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.47
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.47
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.47
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.47
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.47
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.46
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.46
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.46
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.46
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.45
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.45
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.45
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.45
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.45
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.45
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.44
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.44
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.44
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.43
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.43
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.43
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.42
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.41
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.41
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.41
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.41
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.4
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.4
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.4
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.39
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.38
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.38
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.37
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.37
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.37
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.36
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.36
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.36
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.35
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.35
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.34
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.34
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.33
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.33
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.33
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.33
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.33
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.32
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.32
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.31
2o07_A	304	Spermidine synthase; structural genomics, structur	99.3
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.3
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.3
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.3
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.3
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.3
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.3
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.29
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.28
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.28
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.27
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.27
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.27
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.27
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.27
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.26
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.26
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.26
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.25
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.24
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.24
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.23
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.22
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.22
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.22
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.2
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.17
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.15
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.15
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.14
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.14
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.13
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.11
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.11
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.11
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.08
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.05
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.05
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.02
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.02
3lkd_A	542	Type I restriction-modification system methyltrans	98.98
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.98
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.98
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.98
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.97
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.95
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.94
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.91
3khk_A	544	Type I restriction-modification system methylation	98.91
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.84
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.84
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.71
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.66
3ufb_A	530	Type I restriction-modification system methyltran	98.65
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.59
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.58
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.57
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.54
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.52
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.52
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.49
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.46
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.46
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.45
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.43
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.38
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.19
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.16
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.12
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.02
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.98
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.85
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.78
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.77
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.72
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.5
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.42
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.08
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.95
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.9
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.75
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.64
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.61
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.59
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.59
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.58
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.42
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.42
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.37
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.36
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.35
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.29
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.25
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.16
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.11
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.1
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.03
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.99
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.98
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.96
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.88
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.87
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.85
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.84
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.72
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.65
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.58
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.53
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.49
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.48
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.45
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.4
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.33
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.22
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.12
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.11
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.04
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.03
2oo3_A	283	Protein involved in catabolism of external DNA; st	94.99
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.92
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.91
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.9
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.86
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.82
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.72
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.68
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.49
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.44
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.41
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.37
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.36
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.12
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.1
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.09
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.81
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.79
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.73
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.71
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.5
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.3
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	93.19
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.15
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.93
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	92.62
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.46
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.39
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.38
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.55
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.21
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	91.16
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	91.01
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.79
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.65
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.61
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	89.84
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.81
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	89.5
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	89.28
3me5_A	482	Cytosine-specific methyltransferase; structural ge	88.8
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.76
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.35
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	88.32
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.8
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.48
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.08
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	86.83
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.98
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	85.6
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	84.73
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	84.41
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	84.25
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	84.18
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	83.91
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	83.32
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	82.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.26
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	82.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	82.08
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	81.97
1lnq_A	336	MTHK channels, potassium channel related protein;	81.91
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	81.88
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	81.79
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	80.95
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	80.64
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	80.61

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=100.00  E-value=1.4e-35  Score=269.79  Aligned_cols=189  Identities=70%  Similarity=1.182  Sum_probs=166.7

Q ss_pred             CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcE
Q psy17227          2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI   81 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~   81 (268)
                      ||++++++|+.++|.+.+++++.|++|.+|++.+||++.+..+..+++.+++.++++|||||||+|.+++.+|...++.+
T Consensus       120 ~~~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~k  199 (438)
T 3uwp_A          120 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKH  199 (438)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSE
T ss_pred             CCHHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998888878


Q ss_pred             EEEEeCCCChhHHHH-HHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCC
Q psy17227         82 CWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLK  160 (268)
Q Consensus        82 v~GiD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~Lk  160 (268)
                      |+|||+|+.++.+|+ +.+.++++++..|....+++|++||+.++|+.+....+|+|++|+++|++++...|.+++|+||
T Consensus       200 VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLK  279 (438)
T 3uwp_A          200 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK  279 (438)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSC
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCC
Confidence            999999999888887 3344444455566544689999999999998654346789999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCcccccccccCCCCCC
Q psy17227        161 DGARIVSSKSFCPLNFRITDRNLTDGGKKV  190 (268)
Q Consensus       161 pGG~~i~~~~~~~~~~~~~~~~~~~i~~~l  190 (268)
                      |||+||+++.++|.++.++..++.++...+
T Consensus       280 PGGrIVssE~f~p~d~~i~~rnl~di~~il  309 (438)
T 3uwp_A          280 EGGRIVSSKPFAPLNFRINSRNLSDIGTIM  309 (438)
T ss_dssp             TTCEEEESSCSSCTTCCCCSSSTTSGGGSE
T ss_pred             CCcEEEEeecccCCCCCCCcccccChhhhh
Confidence            999999999999998888777776665444

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.92  E-value=2.2e-24  Score=199.13  Aligned_cols=182  Identities=29%  Similarity=0.518  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHhhc-CCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEE
Q psy17227          4 RGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKIC   82 (268)
Q Consensus         4 ~~~~~~~~~~~y~~~~-~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v   82 (268)
                      |.+++.++.++|...+ ++++.+++|..|++..||++.+..+..+++.+++.++++|||||||+|.+++.+|+..|+.+|
T Consensus       190 r~~~e~il~~aY~~~l~P~~~~l~~Y~~~s~~~yGet~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V  269 (433)
T 1u2z_A          190 RSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALS  269 (433)
T ss_dssp             HHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHhhhccccccccccHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEE
Confidence            5668999999999876 578999999999999999999999999999999999999999999999999999998888779


Q ss_pred             EEEeCCCChhHHHH-HHHHHHHHHHHhccccccEEEEEcCCCCC--cccccccceEEEEEeccccCcCHHHHHHHHHhcC
Q psy17227         83 WGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTE--EHREKITQASIVFVNNFAFGPTVDHALKERFQDL  159 (268)
Q Consensus        83 ~GiD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~i~~~~gD~~~l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~L  159 (268)
                      +|||+|+.++..|+ |.+.+++.+...|....+++++++|....  ++......+|+|+++++++.+++...+.+++++|
T Consensus       270 ~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~L  349 (433)
T 1u2z_A          270 FGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTA  349 (433)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhC
Confidence            99999998877774 56666665656664335899999865432  2311113467888887777788999999999999


Q ss_pred             CCCcEEEEeCCCCCCCcccccccccC
Q psy17227        160 KDGARIVSSKSFCPLNFRITDRNLTD  185 (268)
Q Consensus       160 kpGG~~i~~~~~~~~~~~~~~~~~~~  185 (268)
                      ||||++++.++++|.++.++...+..
T Consensus       350 KpGG~lVi~d~f~p~~~~i~~~~l~~  375 (433)
T 1u2z_A          350 KVGCKIISLKSLRSLTYQINFYNVEN  375 (433)
T ss_dssp             CTTCEEEESSCSSCTTCCCCSSSTTC
T ss_pred             CCCeEEEEeeccCCcccccccccccc
Confidence            99999999999988876655444433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.80  E-value=2.5e-19  Score=157.30  Aligned_cols=121  Identities=15%  Similarity=0.159  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         41 FDLISRMIDQI----NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        41 ~~~~~~ll~~l----~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ...+..++..+    ++.++.+|||||||+|.++..+++.+++. |+|+|+|+.++..++  +++.    ..+. ..+++
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~~~  135 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVS-IDCLNIAPVQNKRNE--EYNN----QAGL-ADNIT  135 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HHHH----HHTC-TTTEE
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCE-EEEEeCCHHHHHHHH--HHHH----hcCC-CcceE
Confidence            34556788888    88999999999999999999999887775 999999997554443  3222    2343 25799


Q ss_pred             EEEcCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ++++|+.++|++++.+  |+|++. .+.|.+++...++++.++|||||++++.++.
T Consensus       136 ~~~~d~~~~~~~~~~f--D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          136 VKYGSFLEIPCEDNSY--DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             EEECCTTSCSSCTTCE--EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEcCcccCCCCCCCE--eEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            9999999999876544  566655 4578899999999999999999999987543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.79  E-value=7.6e-19  Score=150.60  Aligned_cols=125  Identities=15%  Similarity=0.144  Sum_probs=99.0

Q ss_pred             CcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc
Q psy17227         35 VYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE  114 (268)
Q Consensus        35 ~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  114 (268)
                      ..++.....+..+++.+++.++.+|||||||+|.++..+++..+.. |+|+|+|+.++..++  +++.    ..+. ..+
T Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~-v~gvD~s~~~l~~a~--~~~~----~~~~-~~~   87 (256)
T 1nkv_A           16 IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAK--RRAE----ELGV-SER   87 (256)
T ss_dssp             SSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCE-EEEEESCHHHHHHHH--HHHH----HTTC-TTT
T ss_pred             ccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHH--HHHH----hcCC-Ccc
Confidence            3445667788899999999999999999999999999999887765 999999997554443  3332    2343 248


Q ss_pred             EEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        115 FRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       115 i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      ++++++|+.++++ ++.  +|+|++... .|.+++...++++.++|||||++++.++
T Consensus        88 v~~~~~d~~~~~~-~~~--fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           88 VHFIHNDAAGYVA-NEK--CDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EEEEESCCTTCCC-SSC--EEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             eEEEECChHhCCc-CCC--CCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            9999999999887 443  566766544 5778899999999999999999998754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.77  E-value=1.3e-18  Score=150.91  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      .+++|.+|||||||+|..+..+++..+.  .+|+|||+|+.|+..|+  +++.    ..+. ..+++|+++|+.++|++ 
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~--~~~~----~~~~-~~~v~~~~~D~~~~~~~-  138 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR--RHID----AYKA-PTPVDVIEGDIRDIAIE-  138 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHH--HHHH----TSCC-SSCEEEEESCTTTCCCC-
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH--HHHH----hhcc-CceEEEeeccccccccc-
Confidence            3789999999999999999999987532  25999999998555443  3332    2332 35899999999998864 


Q ss_pred             cccceEEEEEeccc-cCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        130 KITQASIVFVNNFA-FGP--TVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       130 ~~~d~dvv~~~~~~-~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                         ++|+|+++.++ |.+  +....+++++|+|||||+|++++...+
T Consensus       139 ---~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          139 ---NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             ---SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             ---ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence               35677776554 433  345679999999999999999865544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.76  E-value=4e-18  Score=147.58  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .....+++.+++.++.+|||||||+|.++..+++..++. |+|+|+|+.++..++  +++.    ..+. ..+++++++|
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~~~~~~~d  119 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVR-VTGISISRPQVNQAN--ARAT----AAGL-ANRVTFSYAD  119 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCE-EEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEECC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCE-EEEEeCCHHHHHHHH--HHHH----hcCC-CcceEEEECc
Confidence            345568888899999999999999999999999877665 999999997544443  3322    2333 2479999999


Q ss_pred             CCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        122 FLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +.++|++++.  +|+|++. .+.|.++....++++.++|||||++++.+.
T Consensus       120 ~~~~~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          120 AMDLPFEDAS--FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             TTSCCSCTTC--EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccCCCCCCC--ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999887654  4566655 456778999999999999999999998743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.76  E-value=2.3e-18  Score=143.64  Aligned_cols=115  Identities=12%  Similarity=0.069  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh------c----cc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY------G----KR  111 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~------~----~~  111 (268)
                      +.+.+++..+++.++.+|||+|||+|..+..+|+. |.. |+|||+|+.|+..|+  ++..    ..      +    ..
T Consensus         9 ~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~-V~gvD~S~~~l~~a~--~~~~----~~~~~~~~~~~~~~~   80 (203)
T 1pjz_A            9 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYH-VVGAELSEAAVERYF--TERG----EQPHITSQGDFKVYA   80 (203)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCE-EEEEEECHHHHHHHH--HHHC----SCSEEEEETTEEEEE
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCe-EEEEeCCHHHHHHHH--HHcc----CCccccccccccccc
Confidence            45667788888889999999999999999999886 765 999999998655543  2111    00      0    01


Q ss_pred             cccEEEEEcCCCCCcccc-cccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEE
Q psy17227        112 HGEFRLVKGDFLTEEHRE-KITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       112 ~~~i~~~~gD~~~l~~~~-~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i  166 (268)
                      ..+++|+++|+.++++.+ +.  +|+|++... +|.+  +....+++++|+|||||+++
T Consensus        81 ~~~v~~~~~d~~~l~~~~~~~--fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A           81 APGIEIWCGDFFALTARDIGH--CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             CSSSEEEEECCSSSTHHHHHS--EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             CCccEEEECccccCCcccCCC--EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            247999999999999764 43  566776544 3433  34567899999999999833

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.76  E-value=3e-18  Score=147.53  Aligned_cols=119  Identities=17%  Similarity=0.210  Sum_probs=92.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||||||+|.++..++... . +|+|+|+|+.++..++  +++.    ..+  ..+++++++|+
T Consensus        25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~--~~~~----~~~--~~~v~~~~~d~   94 (260)
T 1vl5_A           25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-K-KVVAFDLTEDILKVAR--AFIE----GNG--HQQVEYVQGDA   94 (260)
T ss_dssp             CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-S-EEEEEESCHHHHHHHH--HHHH----HTT--CCSEEEEECCC
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-C-EEEEEeCCHHHHHHHH--HHHH----hcC--CCceEEEEecH
Confidence            35678888888999999999999999999888764 3 5999999997555443  3322    233  24799999999


Q ss_pred             CCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        123 LTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      .++|++++.  +|+|+++ .+.|.+++...+.++.|+|||||++++.++..+
T Consensus        95 ~~l~~~~~~--fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~  144 (260)
T 1vl5_A           95 EQMPFTDER--FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP  144 (260)
T ss_dssp             -CCCSCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred             HhCCCCCCC--EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCC
Confidence            999987654  4666665 457889999999999999999999998755443

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.75  E-value=2e-18  Score=149.49  Aligned_cols=105  Identities=14%  Similarity=0.081  Sum_probs=82.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+.+..  ..+.+|||||||+|.++..++.. +.. |+|||+|+.|+..|+              +..+++++++|++
T Consensus        30 ~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~-~~~-v~gvD~s~~ml~~a~--------------~~~~v~~~~~~~e   91 (257)
T 4hg2_A           30 FRWLGEVA--PARGDALDCGCGSGQASLGLAEF-FER-VHAVDPGEAQIRQAL--------------RHPRVTYAVAPAE   91 (257)
T ss_dssp             HHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT-CSE-EEEEESCHHHHHTCC--------------CCTTEEEEECCTT
T ss_pred             HHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh-CCE-EEEEeCcHHhhhhhh--------------hcCCceeehhhhh
Confidence            34444443  34568999999999999998864 444 999999986333221              2468999999999


Q ss_pred             CCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+++++  +|+|++...+|+.++...+.++.|+|||||+|++.
T Consensus        92 ~~~~~~~s--fD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A           92 DTGLPPAS--VDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             CCCCCSSC--EEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccCCc--ccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEE
Confidence            99988764  56788777778889999999999999999999875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.75  E-value=4.6e-18  Score=146.13  Aligned_cols=119  Identities=13%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .....+..+++.+++.++.+|||||||+|.++..+++.++.. |+|+|+|+.++..++  +++        ....+++++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-v~~vD~s~~~~~~a~--~~~--------~~~~~~~~~  107 (266)
T 3ujc_A           39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAH-THGIDICSNIVNMAN--ERV--------SGNNKIIFE  107 (266)
T ss_dssp             THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HTC--------CSCTTEEEE
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCE-EEEEeCCHHHHHHHH--HHh--------hcCCCeEEE
Confidence            445567788899999999999999999999999999877665 999999997444433  211        112589999


Q ss_pred             EcCCCCCcccccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      ++|+.++|++++.  +|+|++... .|.  +++...++++.++|||||++++.++
T Consensus       108 ~~d~~~~~~~~~~--fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          108 ANDILTKEFPENN--FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             ECCTTTCCCCTTC--EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECccccCCCCCCc--EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999999876654  566666544 566  7888999999999999999998744

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.74  E-value=1.5e-17  Score=142.52  Aligned_cols=123  Identities=15%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             ccCcHHHHHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         37 GETSFDLISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        37 g~~~~~~~~~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      ++........++..+ ++.++.+|||||||+|..+..+++..+. +|+|+|+|+.++..++  +++.    ..+. ..++
T Consensus        27 ~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~--~~~~----~~~~-~~~~   98 (257)
T 3f4k_A           27 GPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFN--ENAV----KANC-ADRV   98 (257)
T ss_dssp             SSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHH--HHHH----HTTC-TTTE
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHH--HHHH----HcCC-CCce
Confidence            345567777788887 6788999999999999999999998766 5999999997544443  3332    3343 2469


Q ss_pred             EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +++++|+.++|+++.  .+|+|+++..++..++...++++.++|||||++++.+
T Consensus        99 ~~~~~d~~~~~~~~~--~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A           99 KGITGSMDNLPFQNE--ELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEEECCTTSCSSCTT--CEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEECChhhCCCCCC--CEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999999987654  4577877766555589999999999999999999874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.74  E-value=8.1e-18  Score=140.17  Aligned_cols=123  Identities=17%  Similarity=0.215  Sum_probs=94.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ........+++.++..++ +|||||||+|.++..+++. +..+++|+|+|+.++..++  +++.    ..+. ..+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~--~~~~----~~~~-~~~~~~~   98 (219)
T 3dlc_A           28 IYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIAL--KNIA----DANL-NDRIQIV   98 (219)
T ss_dssp             HHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEE
T ss_pred             ccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHH--HHHH----hccc-cCceEEE
Confidence            444566778888888887 9999999999999999887 3345999999997554443  3332    2333 2489999


Q ss_pred             EcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      ++|+.+++++++.  +|+|+++.. .|.+++...+++++++|||||++++.+.+.
T Consensus        99 ~~d~~~~~~~~~~--~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A           99 QGDVHNIPIEDNY--ADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             ECBTTBCSSCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             EcCHHHCCCCccc--ccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            9999998876654  566766654 677899999999999999999999874443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.73  E-value=1.9e-17  Score=143.19  Aligned_cols=122  Identities=15%  Similarity=0.188  Sum_probs=94.1

Q ss_pred             CcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .......+++..+. +.++.+|||||||+|.++..+++. +..+|+|+|+|+.++..++  ++++    ..+. .+++++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~  100 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFN--RNAR----QSGL-QNRVTG  100 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEE
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH--HHHH----HcCC-CcCcEE
Confidence            44566777888876 788999999999999999999887 5545999999997544443  3322    3343 247999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +++|+.++|++++  .+|+|+++..++..++...++++.++|||||++++.++
T Consensus       101 ~~~d~~~~~~~~~--~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          101 IVGSMDDLPFRNE--ELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             EECCTTSCCCCTT--CEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEcChhhCCCCCC--CEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999999987654  45777776664434899999999999999999998743

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.73  E-value=2.2e-17  Score=140.71  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=95.3

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ++.....+++.+++.++.+|||||||+|.++..++... . +++|+|+|+.++..++  +++.    ..+.  .++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~--~~~~----~~~~--~~v~~~~   75 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-Q-ECIGVDATKEMVEVAS--SFAQ----EKGV--ENVRFQQ   75 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-S-EEEEEESCHHHHHHHH--HHHH----HHTC--CSEEEEE
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-C-EEEEEECCHHHHHHHH--HHHH----HcCC--CCeEEEe
Confidence            45566778899999999999999999999999888753 4 4999999997554443  3332    2232  4799999


Q ss_pred             cCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        120 GDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      +|+.++|++++.  +|+|++. .+.|.+++...+.++.++|||||++++.+...+
T Consensus        76 ~d~~~~~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           76 GTAESLPFPDDS--FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP  128 (239)
T ss_dssp             CBTTBCCSCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             cccccCCCCCCc--EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence            999998876654  5667666 456888999999999999999999998755443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.72  E-value=4.7e-17  Score=143.37  Aligned_cols=116  Identities=13%  Similarity=0.139  Sum_probs=88.4

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.++++++.+|||||||+|.++..+++.+|.. |+|+|+|+.++..++  +++.    ..+. ..+++++++|+
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~  131 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVN-VIGLTLSENQYAHDK--AMFD----EVDS-PRRKEVRIQGW  131 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEECCHHHHHHHH--HHHH----HSCC-SSCEEEEECCG
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCE-EEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEECCH
Confidence            45568888899999999999999999999999987865 999999997554443  3332    3343 24899999999


Q ss_pred             CCCcccccccceEEEEEe-ccccCcCH---------HHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        123 LTEEHREKITQASIVFVN-NFAFGPTV---------DHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      .++   +..+  |+|++. .+.|.+++         ...++++.++|||||++++.+..
T Consensus       132 ~~~---~~~f--D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          132 EEF---DEPV--DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             GGC---CCCC--SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             HHc---CCCc--cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            876   3444  455554 44566554         78899999999999999987443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.72  E-value=1.1e-16  Score=139.64  Aligned_cols=116  Identities=10%  Similarity=0.109  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||||||+|.++..+++..|+. |+|+|+|+.++..++  +++.    ..+. ..+++++++|+
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~--~~~~----~~~~-~~~~~~~~~d~  123 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVN-VVGLTLSKNQANHVQ--QLVA----NSEN-LRSKRVLLAGW  123 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HHHH----TCCC-CSCEEEEESCG
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCE-EEEEECCHHHHHHHH--HHHH----hcCC-CCCeEEEECCh
Confidence            44567888889999999999999999999999778885 999999997544443  3222    2332 24899999999


Q ss_pred             CCCcccccccceEEEEEe-ccccC--cCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        123 LTEEHREKITQASIVFVN-NFAFG--PTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      .++|   +.+  |+|++. .+.|.  ++....++++.++|||||++++.++.
T Consensus       124 ~~~~---~~f--D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          124 EQFD---EPV--DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             GGCC---CCC--SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhCC---CCe--eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            8766   334  455554 45566  57889999999999999999987443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.71  E-value=4.7e-17  Score=136.19  Aligned_cols=116  Identities=11%  Similarity=0.076  Sum_probs=91.8

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ...+++.+++.++.+|||||||+|.++..+++.. +..+++|+|+|+.++..++  +++.    ..+.  .+++++++|+
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~--~~~~~~~~d~   97 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAW--EKVN----KLGL--KNVEVLKSEE   97 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHH--HHHH----HHTC--TTEEEEECBT
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEeccc
Confidence            4678888899999999999999999999999886 3446999999997555443  3332    2232  3799999999


Q ss_pred             CCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        123 LTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      .++++++..  +|+|+++.. .|.++....++++.++|||||++++.+
T Consensus        98 ~~~~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A           98 NKIPLPDNT--VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             TBCSSCSSC--EEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCCCC--eeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence            998876654  566666554 677889999999999999999999874

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.71  E-value=5.6e-17  Score=143.68  Aligned_cols=114  Identities=20%  Similarity=0.262  Sum_probs=89.0

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+++.++ +.++.+|||||||+|.++..+++..+.. |+|+|+|+.++..++  +++.    ..+. ..+++++++|+.+
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~  178 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSR-VEGVTLSAAQADFGN--RRAR----ELRI-DDHVRSRVCNMLD  178 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEECCTTS
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCE-EEEEeCCHHHHHHHH--HHHH----HcCC-CCceEEEECChhc
Confidence            4777777 8899999999999999999999877765 999999997544443  3332    3343 2479999999999


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|++++.  +|+|++...++..+....+.++.++|||||++++.+
T Consensus       179 ~~~~~~~--fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          179 TPFDKGA--VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             CCCCTTC--EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCC--EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9876654  566776655433368999999999999999999874

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.71  E-value=2.7e-17  Score=140.87  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=86.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++..++.+|||||||+|.++..+++. +..+|+|+|+|+.++..++  +++         ...+++++++|+.+
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~--~~~---------~~~~~~~~~~d~~~  101 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAK--RKT---------TSPVVCYEQKAIED  101 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHH--HHC---------CCTTEEEEECCGGG
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH--Hhh---------ccCCeEEEEcchhh
Confidence            34667777778999999999999999998876 4435999999997444433  111         13589999999999


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+++..  +|+|++... .|.+++...+++++++|||||+++++
T Consensus       102 ~~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          102 IAIEPDA--YNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             CCCCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCC--eEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            8876554  566666554 57789999999999999999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.71  E-value=2.1e-17  Score=138.39  Aligned_cols=110  Identities=19%  Similarity=0.281  Sum_probs=84.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+...++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  ++         .. .+++++++|+.
T Consensus        34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~~---------~~-~~~~~~~~d~~   99 (220)
T 3hnr_A           34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRT-VYGIEPSREMRMIAK--EK---------LP-KEFSITEGDFL   99 (220)
T ss_dssp             HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCE-EEEECSCHHHHHHHH--HH---------SC-TTCCEESCCSS
T ss_pred             HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCe-EEEEeCCHHHHHHHH--Hh---------CC-CceEEEeCChh
Confidence            456667776778999999999999999998876 554 999999997444433  11         11 47999999999


Q ss_pred             CCcccccccceEEEEEecc-ccCcCHHH--HHHHHHhcCCCCcEEEEeCC
Q psy17227        124 TEEHREKITQASIVFVNNF-AFGPTVDH--ALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~~~~~~--~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +++++ +.  +|+|+++.. .|.++...  .++++.++|||||.+++.++
T Consensus       100 ~~~~~-~~--fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          100 SFEVP-TS--IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             SCCCC-SC--CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hcCCC-CC--eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            98876 44  456666554 56677665  89999999999999998744

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=3.9e-17  Score=140.00  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .......+++.+++.++.+|||||||+|.++..++...+..+++|+|+|+.++..++  ++           ..++++++
T Consensus        18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~--~~-----------~~~~~~~~   84 (259)
T 2p35_A           18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAA--DR-----------LPNTNFGK   84 (259)
T ss_dssp             GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHH--HH-----------STTSEEEE
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--Hh-----------CCCcEEEE
Confidence            345566788888888999999999999999999998875445999999997444433  11           24799999


Q ss_pred             cCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        120 GDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|+.+++ ++.  .+|+|+++.. .|.+++...+.+++++|||||++++..
T Consensus        85 ~d~~~~~-~~~--~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           85 ADLATWK-PAQ--KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             CCTTTCC-CSS--CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CChhhcC-ccC--CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999987 444  4567777655 566889999999999999999999863

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.70  E-value=9.3e-17  Score=134.53  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc---cccEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR---HGEFRL  117 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~i~~  117 (268)
                      ......+++.+...++.+|||||||+|.++..+++..+..+++|+|+|+.++..++  +++.    ..+..   ..++++
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~~~~~~~~v~~   88 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ--ERLD----RLRLPRNQWERLQL   88 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHH--HHHT----TCCCCHHHHTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHH--HHHH----HhcCCcccCcceEE
Confidence            34556677777777889999999999999999988766556999999997555443  3221    11211   127999


Q ss_pred             EEcCCCCCcccccccceEEEEEecc-ccCcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNF-AFGPTV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+..++..+..+  |+|++... .|.++.  ...++++.++|||||.++++
T Consensus        89 ~~~d~~~~~~~~~~f--D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           89 IQGALTYQDKRFHGY--DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             EECCTTSCCGGGCSC--SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EeCCcccccccCCCc--CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            999998777655544  55666554 555543  78899999999999988876

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.70  E-value=6.9e-17  Score=141.77  Aligned_cols=121  Identities=13%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             CCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHH-HHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc
Q psy17227         33 PFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVV-LQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR  111 (268)
Q Consensus        33 ~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~-~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~  111 (268)
                      ...|.+.....+..-...++++++++|||||||+|.++ +.+|+..++. |+|||+|+.++..|+  ++++    ..|. 
T Consensus       100 ~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar--~~~~----~~gl-  171 (298)
T 3fpf_A          100 SFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSR--KVIE----GLGV-  171 (298)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHH--HHHH----HHTC-
T ss_pred             cCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHH--HHHH----hcCC-
Confidence            33444444444444456789999999999999999876 4455545665 999999998555544  4333    3444 


Q ss_pred             cccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 HGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 ~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+++|+++|+.++|  +..  +|+|++.+.  .++....+.+++|+|||||++++.
T Consensus       172 -~~v~~v~gDa~~l~--d~~--FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          172 -DGVNVITGDETVID--GLE--FDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             -CSEEEEESCGGGGG--GCC--CSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             -CCeEEEECchhhCC--CCC--cCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence             58999999999876  443  567777544  578899999999999999999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.70  E-value=9.6e-17  Score=134.52  Aligned_cols=122  Identities=14%  Similarity=0.104  Sum_probs=88.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc---cccE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR---HGEF  115 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~i  115 (268)
                      ..+.....+++.+...++.+|||||||+|.++..+++..+..+++|+|+|+.++..++  +++.    ..+..   ..++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~~~~~~~~v   86 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAK--DRLK----IDRLPEMQRKRI   86 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHH--HHHT----GGGSCHHHHTTE
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHHH----hhccccccCcce
Confidence            4445566677777667889999999999999999888666556999999997555443  3222    11211   1289


Q ss_pred             EEEEcCCCCCcccccccceEEEEEecc-ccCcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNF-AFGPTV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++|+..+++.+..+  |+|++..+ .|.++.  ...++++.++|||||.++++
T Consensus        87 ~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           87 SLFQSSLVYRDKRFSGY--DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             EEEECCSSSCCGGGTTC--SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EEEeCcccccccccCCC--CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            99999998887665555  45655544 566643  68899999999999988775

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.2e-16  Score=140.42  Aligned_cols=121  Identities=15%  Similarity=0.125  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..+...+..+...++.+|||||||+|..+..+++.+ +..+|+|+|+|+.++..++  ++++    ..+....+++|+++
T Consensus        23 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~~~~~v~~~~~   96 (299)
T 3g5t_A           23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE--VIKE----GSPDTYKNVSFKIS   96 (299)
T ss_dssp             HHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHH--HHHH----HCC-CCTTEEEEEC
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH--HHHH----hccCCCCceEEEEc
Confidence            344455555545789999999999999999999865 5566999999997555443  3332    22011358999999


Q ss_pred             CCCCCccccc----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREK----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.++++.+.    ...+|+|++...+|+-++...+.++.++|||||.+++.
T Consensus        97 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A           97 SSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             CTTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence            9999987650    12467777766543339999999999999999999873

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=9.3e-17  Score=132.94  Aligned_cols=133  Identities=20%  Similarity=0.216  Sum_probs=94.2

Q ss_pred             HHHHHHhhcCCcccc-ccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227         11 IQQTYNQSVTEPEKL-NVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD   89 (268)
Q Consensus        11 ~~~~y~~~~~~~~~~-~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~   89 (268)
                      +.+.|+.....++.. ......     .+.....+..++...    +.+|||||||+|.++..++.. +.. ++|+|+|+
T Consensus         5 ~~~~y~~~a~~y~~~~~~~~~~-----~~~~~~~l~~~~~~~----~~~vLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~   73 (203)
T 3h2b_A            5 VSKAYSSPTFDAEALLGTVISA-----EDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL-GHQ-IEGLEPAT   73 (203)
T ss_dssp             HHHHHHCTTTCHHHHTCSSCCT-----TCTTHHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHT-TCC-EEEECCCH
T ss_pred             HHHHHhhHHHHHHHHhhhhccc-----cHHHHHHHHHHhccC----CCeEEEecCCCCHHHHHHHhc-CCe-EEEEeCCH
Confidence            567788877655333 222211     123344455554442    778999999999999998876 665 99999998


Q ss_pred             ChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEE
Q psy17227         90 LPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIV  166 (268)
Q Consensus        90 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i  166 (268)
                      .++..++      +       ...+++++++|+.++++++..  +|+|++... .|.+  ++...++++.++|||||+++
T Consensus        74 ~~~~~a~------~-------~~~~~~~~~~d~~~~~~~~~~--fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  138 (203)
T 3h2b_A           74 RLVELAR------Q-------THPSVTFHHGTITDLSDSPKR--WAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL  138 (203)
T ss_dssp             HHHHHHH------H-------HCTTSEEECCCGGGGGGSCCC--EEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEE
T ss_pred             HHHHHHH------H-------hCCCCeEEeCcccccccCCCC--eEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            7444433      1       124799999999998876554  566766554 4554  78999999999999999999


Q ss_pred             EeC
Q psy17227        167 SSK  169 (268)
Q Consensus       167 ~~~  169 (268)
                      +..
T Consensus       139 i~~  141 (203)
T 3h2b_A          139 MSF  141 (203)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            863

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.70  E-value=6.6e-17  Score=139.57  Aligned_cols=110  Identities=17%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .......+++.++..++.+|||||||+|..+..++. .+. +|+|+|+|+.++..++              ...+++|++
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~--------------~~~~~~~~~   82 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGL-FVYAVEPSIVMRQQAV--------------VHPQVEWFT   82 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTC-EEEEECSCHHHHHSSC--------------CCTTEEEEC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCC-EEEEEeCCHHHHHHHH--------------hccCCEEEE
Confidence            345667788888889999999999999999999887 454 4999999986332221              123899999


Q ss_pred             cCCCCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.++|++++.+|  +|++.. +.|.+++...+++++++|| ||++++.
T Consensus        83 ~d~~~~~~~~~~fD--~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~  129 (261)
T 3ege_A           83 GYAENLALPDKSVD--GVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLL  129 (261)
T ss_dssp             CCTTSCCSCTTCBS--EEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEE
T ss_pred             CchhhCCCCCCCEe--EEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEE
Confidence            99999998766554  555554 5688999999999999999 9987765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.70  E-value=4.9e-17  Score=138.40  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      +.++++||++|||||||+|.++..+|+..|. .+|+|+|+|+.|+..++  ++++        +.+|+..+.+|..+...
T Consensus        71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~--~~a~--------~~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL--TVVR--------DRRNIFPILGDARFPEK  140 (233)
T ss_dssp             SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH--HHST--------TCTTEEEEESCTTCGGG
T ss_pred             hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--HhhH--------hhcCeeEEEEeccCccc
Confidence            4568999999999999999999999998764 47999999997444332  2221        23589999999987542


Q ss_pred             -cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 -REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 -~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +.....+|+|++. +.+.++....+.++.+.|||||++++.
T Consensus       141 ~~~~~~~vDvVf~d-~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          141 YRHLVEGVDGLYAD-VAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             GTTTCCCEEEEEEC-CCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccceEEEEEEe-ccCChhHHHHHHHHHHhccCCCEEEEE
Confidence             2223457888864 445567788899999999999999875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.69  E-value=2.6e-16  Score=139.52  Aligned_cols=117  Identities=13%  Similarity=0.178  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||||||+|.++..+++..++. |+|+|+|+.++..++  +++.    ..+. ..+++++++|+
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~  149 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVN-VIGLTLSKNQHARCE--QVLA----SIDT-NRSRQVLLQGW  149 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HHHH----TSCC-SSCEEEEESCG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCE-EEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEECCh
Confidence            44567888889999999999999999999999877775 999999997554443  3222    2333 24799999999


Q ss_pred             CCCcccccccceEEEEEe-ccccC--cCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        123 LTEEHREKITQASIVFVN-NFAFG--PTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      .++|   +.+  |+|++. .+.|.  +++...++++.++|||||++++.++..
T Consensus       150 ~~~~---~~f--D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          150 EDFA---EPV--DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             GGCC---CCC--SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             HHCC---CCc--CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            8875   334  556555 44555  578899999999999999999874443

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.68  E-value=2.4e-16  Score=133.26  Aligned_cols=116  Identities=13%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ...++..+. ..++.+|||||||+|.++..++...+..+++|+|+|+.++..++  +++.        ..++++++++|+
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~--~~~~--------~~~~~~~~~~d~  101 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK--NRFR--------GNLKVKYIEADY  101 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHTC--------SCTTEEEEESCT
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH--Hhhc--------cCCCEEEEeCch
Confidence            345556654 56789999999999999999998875556999999997444433  2211        123899999999


Q ss_pred             CCCcccccccceEEEEEecc-ccCcCHH--HHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNF-AFGPTVD--HALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~--~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      .+++++ +  .+|+|++... .|.++..  ..+++++++|||||++++.+...
T Consensus       102 ~~~~~~-~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          102 SKYDFE-E--KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             TTCCCC-S--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             hccCCC-C--CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            998875 3  4677777655 4555444  58999999999999999875443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.68  E-value=1.1e-15  Score=126.83  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ......++..+++.++.+|||||||+|.++..+++..+..+|+|+|+|+.++..++  ++++    ..+.  .+++++++
T Consensus        26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~--~~v~~~~~   97 (204)
T 3e05_A           26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIR--DNLK----KFVA--RNVTLVEA   97 (204)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHH--HHHH----HHTC--TTEEEEEC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC--CcEEEEeC
Confidence            33446688889999999999999999999999998865567999999997555543  3333    2333  58999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.+......  .+|+|+++...+  +....+.++.++|||||++++.
T Consensus        98 d~~~~~~~~~--~~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A           98 FAPEGLDDLP--DPDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             CTTTTCTTSC--CCSEEEESCCTT--CHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ChhhhhhcCC--CCCEEEECCCCc--CHHHHHHHHHHhcCCCeEEEEE
Confidence            9976442222  457788765543  7889999999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.68  E-value=2.6e-16  Score=137.28  Aligned_cols=113  Identities=13%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..++..+... +.+|||||||+|.++..++.. +.. |+|+|+|+.++..++  +++.    ..+. ..+++++++|+.
T Consensus        58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~  127 (285)
T 4htf_A           58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQ-VILCDLSAQMIDRAK--QAAE----AKGV-SDNMQFIHCAAQ  127 (285)
T ss_dssp             HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----C-CC-GGGEEEEESCGG
T ss_pred             HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHHH----hcCC-CcceEEEEcCHH
Confidence            34566666554 679999999999999998886 665 999999997554443  3222    2232 258999999999


Q ss_pred             CCc-ccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE-HREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~-~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++ +.+.  .+|+|++... .|.+++...++++.++|||||++++.
T Consensus       128 ~~~~~~~~--~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  172 (285)
T 4htf_A          128 DVASHLET--PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLM  172 (285)
T ss_dssp             GTGGGCSS--CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HhhhhcCC--CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEE
Confidence            987 5554  4566766655 57889999999999999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.67  E-value=3.8e-16  Score=128.32  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.++..++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  +++.    ..+.  .+++++++|+.++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~~~~----~~~~--~~~~~~~~d~~~~   92 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYD-VDAWDKNAMSIANVE--RIKS----IENL--DNLHTRVVDLNNL   92 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HHTC--TTEEEEECCGGGC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HHHH----hCCC--CCcEEEEcchhhC
Confidence            4666677778889999999999999998876 654 999999997544443  3332    2232  3799999999988


Q ss_pred             cccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        126 EHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      ++ +.  .+|+|+++.. .|.+  +....++++.++|||||++++..++.
T Consensus        93 ~~-~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (199)
T 2xvm_A           93 TF-DR--QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD  139 (199)
T ss_dssp             CC-CC--CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             CC-CC--CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence            86 43  4677777665 4444  68889999999999999988764443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.67  E-value=3.1e-16  Score=135.30  Aligned_cols=111  Identities=10%  Similarity=-0.033  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH-----H-HHhc-----cccccEEEEEc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW-----M-QWYG-----KRHGEFRLVKG  120 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~-----~-~~~~-----~~~~~i~~~~g  120 (268)
                      ...++.+|||+|||+|..+..+|+. |.. |+|||+|+.|+..|+  +.....     . ...+     ....+++|+++
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~-V~gvD~S~~~i~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADR-GHT-VVGVEISEIGIREFF--AEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC  140 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT-TCE-EEEECSCHHHHHHHH--HHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HhcccccccccccccccccccccCCCceEEEEC
Confidence            4568889999999999999999875 775 999999998555443  211000     0 0000     01258999999


Q ss_pred             CCCCCcccccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEE
Q psy17227        121 DFLTEEHREKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      |+.++++.+. ..+|+|++..++ +.  ++....++++.++|||||++++
T Consensus       141 D~~~l~~~~~-~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          141 SIFDLPRANI-GKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             CTTTGGGGCC-CCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccCCcccC-CCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9999987531 246778766543 33  3456789999999999999863

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.67  E-value=3e-16  Score=128.88  Aligned_cols=122  Identities=16%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             cCcHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc
Q psy17227         38 ETSFDLISRMIDQIN---ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE  114 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~---~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  114 (268)
                      ++.......+++.+.   ..++.+|||+|||+|.+++.++. .+..+|+|+|+|+.++..++  ++++    ..+.  .+
T Consensus        24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~--~~   94 (189)
T 3p9n_A           24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIA--RNIE----ALGL--SG   94 (189)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHH--HHHH----HHTC--SC
T ss_pred             cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHH--HHHH----HcCC--Cc
Confidence            344444455555543   25788999999999999998776 46666999999998555544  3333    2332  58


Q ss_pred             EEEEEcCCCCCcccccccceEEEEEeccccC--cCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227        115 FRLVKGDFLTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQ--DLKDGARIVSS  168 (268)
Q Consensus       115 i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r--~LkpGG~~i~~  168 (268)
                      ++++++|+.+++.......+|+|+++..++.  ++....+.++.+  +|||||++++.
T Consensus        95 v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A           95 ATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             EEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             eEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence            9999999988652111134678888876554  567888999988  99999999985

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.67  E-value=4.2e-17  Score=136.76  Aligned_cols=116  Identities=13%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ..+..+.+.++.+|||||||+|.++..+++..+..+|+|+|+|+.|+..+.  +.+++.....+  ..+++++++|+.++
T Consensus        18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~--~~a~~~~~~~~--~~~v~~~~~d~~~l   93 (218)
T 3mq2_A           18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS--AKAAAKPAKGG--LPNLLYLWATAERL   93 (218)
T ss_dssp             HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH--HHHTSCGGGTC--CTTEEEEECCSTTC
T ss_pred             HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHHHhhhhcC--CCceEEEecchhhC
Confidence            455566688999999999999999999999875666999999998665321  11111111122  34899999999999


Q ss_pred             cccccccceEEEEEec-c--c---cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNN-F--A---FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~-~--~---~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.++.   |.+++.. +  .   |.++....+++++++|||||++++.
T Consensus        94 ~~~~~~---d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           94 PPLSGV---GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CSCCCE---EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCCC---CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            976543   3443221 1  1   4456688999999999999999985

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.67  E-value=2.5e-16  Score=133.60  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++..++.+|||||||+|.++..+++. +..+++|+|+|+.++..++  ++        . ...+++++++|+.++
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~--~~--------~-~~~~~~~~~~d~~~~  101 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARAR--AA--------G-PDTGITYERADLDKL  101 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHH--HT--------S-CSSSEEEEECCGGGC
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHH--Hh--------c-ccCCceEEEcChhhc
Confidence            4666677778999999999999999988875 6635999999987444433  11        1 124799999999988


Q ss_pred             cccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++..  +|+|++... .|.+++...++++.++|||||++++.
T Consensus       102 ~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          102 HLPQDS--FDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             CCCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCC--ceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence            865543  566666554 57788999999999999999999986

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.66  E-value=3e-16  Score=136.04  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=87.3

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ....+.++.+|||||||+|.++..+++..+..+++|+|+|+.++..++  +++.    ..+  ..+++++++|+.+++++
T Consensus        31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~d~~~~~~~  102 (276)
T 3mgg_A           31 HDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR--ENTE----KNG--IKNVKFLQANIFSLPFE  102 (276)
T ss_dssp             TTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHH----HTT--CCSEEEEECCGGGCCSC
T ss_pred             hcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcC--CCCcEEEEcccccCCCC
Confidence            344568899999999999999999998865556999999997544443  3332    223  24799999999998876


Q ss_pred             ccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        129 EKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       129 ~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +.  .+|+|+++.. .|.+++...+.++.++|||||++++.+
T Consensus       103 ~~--~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          103 DS--SFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             TT--CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC--CeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            65  4566776655 578899999999999999999999874

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.66  E-value=4.3e-16  Score=130.74  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC----c
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE----E  126 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l----~  126 (268)
                      +++++|++|||||||+|..+..+++..+..+|+|+|+|+.|+  +.+.+.+++        ..++.++++|+.+.    +
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l--~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~  122 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF--EKLLELVRE--------RNNIIPLLFDASKPWKYSG  122 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH--HHHHHHHHH--------CSSEEEECSCTTCGGGTTT
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH--HHHHHHHhc--------CCCeEEEEcCCCCchhhcc
Confidence            567899999999999999999999887644699999998743  333333332        24799999999874    3


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.   ..+|+|+++.. +..+....+.+++++|||||+|++.
T Consensus       123 ~~---~~fD~V~~~~~-~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          123 IV---EKVDLIYQDIA-QKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             TC---CCEEEEEECCC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc---cceeEEEEecc-ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            32   35688888732 2222334589999999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.66  E-value=1.8e-16  Score=144.61  Aligned_cols=114  Identities=21%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHh-c-cccccEEEEEcCCCCC----
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWY-G-KRHGEFRLVKGDFLTE----  125 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~-~~~~~i~~~~gD~~~l----  125 (268)
                      +.++.+|||||||+|..+..+++..+ ..+|+|+|+|+.++..++  +++++..... | ....+++|+++|+.++    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVAR--KYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHH--HTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence            56889999999999999999998863 446999999998555544  3333211111 2 2235899999999997    


Q ss_pred             --cccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        126 --EHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       126 --~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                        +++++.  +|+|+++.. .|.+++...+++++++|||||++++.+.
T Consensus       159 ~~~~~~~~--fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          159 PEGVPDSS--VDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             SCCCCTTC--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCCCC--EEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence              766554  567777655 5778999999999999999999998743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=5.3e-16  Score=126.64  Aligned_cols=112  Identities=12%  Similarity=0.104  Sum_probs=78.8

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...++. ..++++++|||||||+|.++..+|+. +. +|+|+|+|+.++..++  ++++    ..+.  .+++++++|+.
T Consensus        12 ~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~v~~vD~s~~~l~~a~--~~~~----~~~~--~~v~~~~~~~~   80 (185)
T 3mti_A           12 SHDFLA-EVLDDESIVVDATMGNGNDTAFLAGL-SK-KVYAFDVQEQALGKTS--QRLS----DLGI--ENTELILDGHE   80 (185)
T ss_dssp             HHHHHH-TTCCTTCEEEESCCTTSHHHHHHHTT-SS-EEEEEESCHHHHHHHH--HHHH----HHTC--CCEEEEESCGG
T ss_pred             HHHHHH-HhCCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEeCcHH
Confidence            334443 35788999999999999999999886 44 4999999998555543  3333    2333  58999998888


Q ss_pred             CCc-ccccccceEEEEEe-ccccC---------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE-HREKITQASIVFVN-NFAFG---------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~-~~~~~~d~dvv~~~-~~~~~---------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++ +.+.  .+|+|+++ .+++.         .+....+.+++++|||||++++.
T Consensus        81 ~l~~~~~~--~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           81 NLDHYVRE--PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             GGGGTCCS--CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHhhccC--CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            754 3233  46777766 33222         33456789999999999999876

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.66  E-value=4.7e-16  Score=133.38  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=81.8

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .+.++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++  +++.      + ...+++++++|+.++|++++.
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~~~~------~-~~~~~~~~~~d~~~~~~~~~~  104 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR-GYR-YIALDADAAMLEVFR--QKIA------G-VDRKVQVVQADARAIPLPDES  104 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT-TCE-EEEEESCHHHHHHHH--HHTT------T-SCTTEEEEESCTTSCCSCTTC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHhh------c-cCCceEEEEcccccCCCCCCC
Confidence            6788999999999999999988875 554 999999997544443  2210      1 235899999999998876554


Q ss_pred             cceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +|+|++... .|.++....+.++.++|||||++++.
T Consensus       105 --fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          105 --VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             --EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence              566766554 56778999999999999999999986

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=2.6e-16  Score=136.93  Aligned_cols=106  Identities=24%  Similarity=0.365  Sum_probs=85.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+.+.++.+|||||||+|.++..++. .+. .|+|+|+|+.++..++      +       ...+++++++|+.+
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~------~-------~~~~~~~~~~d~~~  111 (279)
T 3ccf_A           47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGA-EVLGTDNAATMIEKAR------Q-------NYPHLHFDVADARN  111 (279)
T ss_dssp             CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHH------H-------HCTTSCEEECCTTT
T ss_pred             HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCC-eEEEEECCHHHHHHHH------h-------hCCCCEEEECChhh
Confidence            4577788888999999999999999999887 454 4999999997444433      1       01478999999999


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|++ +  .+|+|++... .|.+++...++++.++|||||++++.
T Consensus       112 ~~~~-~--~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  153 (279)
T 3ccf_A          112 FRVD-K--PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAE  153 (279)
T ss_dssp             CCCS-S--CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcC-C--CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEE
Confidence            8863 3  4567777655 56689999999999999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.65  E-value=6e-16  Score=135.22  Aligned_cols=117  Identities=19%  Similarity=0.275  Sum_probs=90.1

Q ss_pred             HHHHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         42 DLISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        42 ~~~~~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ..+..+++.+ .+.++.+|||||||+|..+..++..++. .+|+|+|+|+.++..++  +++.    .   ...++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~---~~~~v~~~~   78 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR--ELFR----L---LPYDSEFLE   78 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHH--HHHH----S---SSSEEEEEE
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----h---cCCceEEEE
Confidence            4455566555 6778999999999999999999887653 56999999997544443  3322    1   123899999


Q ss_pred             cCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        120 GDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +|+.+++++ +  .+|+|++... .|.+++...+++++++|||||++++.++
T Consensus        79 ~d~~~~~~~-~--~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           79 GDATEIELN-D--KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             SCTTTCCCS-S--CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cchhhcCcC-C--CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            999998874 3  4677777655 6778999999999999999999998744

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.65  E-value=4.2e-16  Score=133.13  Aligned_cols=114  Identities=11%  Similarity=0.072  Sum_probs=87.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+...++.+|||||||+|.++..++... ..+|+|+|+|+.++..++  +++.        ...+++++++|+.
T Consensus        82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~--~~~~--------~~~~~~~~~~d~~  150 (254)
T 1xtp_A           82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK--RELA--------GMPVGKFILASME  150 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHH--HHTT--------TSSEEEEEESCGG
T ss_pred             HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHH--HHhc--------cCCceEEEEccHH
Confidence            3567778888889999999999999999988865 445999999997544443  2221        1257999999999


Q ss_pred             CCcccccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        124 TEEHREKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +++++++  .+|+|++... .|.  .++...++++.++|||||++++.++
T Consensus       151 ~~~~~~~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          151 TATLPPN--TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GCCCCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HCCCCCC--CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9887654  3566766655 455  4578889999999999999998744

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.65  E-value=3.5e-16  Score=130.36  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ...+++.+. +.++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  +        .+  ..+++++++|+
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~~D~s~~~~~~a~--~--------~~--~~~~~~~~~d~   99 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADR-VTALDGSAEMIAEAG--R--------HG--LDNVEFRQQDL   99 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSE-EEEEESCHHHHHHHG--G--------GC--CTTEEEEECCT
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCe-EEEEeCCHHHHHHHH--h--------cC--CCCeEEEeccc
Confidence            345556654 778889999999999999998886 554 999999987444433  1        22  25899999999


Q ss_pred             CCCcccccccceEEEEEecc-ccCcCH--HHHHHHHHhcCCCCcEEEEeCC
Q psy17227        123 LTEEHREKITQASIVFVNNF-AFGPTV--DHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~--~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      .++ +++.  .+|+|+++.. .|.++.  ...++++.++|||||++++.+.
T Consensus       100 ~~~-~~~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          100 FDW-TPDR--QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             TSC-CCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC-CCCC--ceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            987 4444  4567777655 455653  7889999999999999998743

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=2.6e-15  Score=125.23  Aligned_cols=112  Identities=18%  Similarity=0.255  Sum_probs=84.0

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .....++..+++.++++|||||||+|.++..+|+. +.. |+|+|+|+.++..++  ++++    ..+. ..+++++++|
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~-v~~vD~s~~~~~~a~--~~~~----~~g~-~~~v~~~~~d  112 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGR-AITIEPRADRIENIQ--KNID----TYGL-SPRMRAVQGT  112 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEESC
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCE-EEEEeCCHHHHHHHH--HHHH----HcCC-CCCEEEEeCc
Confidence            33456788889999999999999999999999887 554 999999998555544  3333    2343 2389999999


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.....  ..+|+|+++...   +.. .+.+++++|||||++++.
T Consensus       113 ~~~~~~~~--~~~D~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~  153 (204)
T 3njr_A          113 APAALADL--PLPEAVFIGGGG---SQA-LYDRLWEWLAPGTRIVAN  153 (204)
T ss_dssp             TTGGGTTS--CCCSEEEECSCC---CHH-HHHHHHHHSCTTCEEEEE
T ss_pred             hhhhcccC--CCCCEEEECCcc---cHH-HHHHHHHhcCCCcEEEEE
Confidence            98832222  245778776532   555 899999999999999985

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.65  E-value=2.2e-16  Score=131.50  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=80.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+++..+.. ++.+|||||||+|.++..+    +..+++|+|+|+.++..++  ++           ..+++++++|+.+
T Consensus        27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~--~~-----------~~~~~~~~~d~~~   88 (211)
T 2gs9_A           27 ERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGR--RR-----------APEATWVRAWGEA   88 (211)
T ss_dssp             HHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHH--HH-----------CTTSEEECCCTTS
T ss_pred             HHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHH--Hh-----------CCCcEEEEccccc
Confidence            445555543 8889999999999998765    6635999999987444433  11           1478999999999


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|++++.  +|+|++... .|.+++...++++.++|||||+++++.
T Consensus        89 ~~~~~~~--fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A           89 LPFPGES--FDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             CCSCSSC--EEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCc--EEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            9876654  566666555 577889999999999999999999863

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.64  E-value=5.6e-16  Score=131.45  Aligned_cols=102  Identities=18%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  +        .. ...+++++++|+.++|+++.. 
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~--------~~-~~~~~~~~~~d~~~~~~~~~~-  116 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT-GYK-AVGVDISEVMIQKGK--E--------RG-EGPDLSFIKGDLSSLPFENEQ-  116 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--T--------TT-CBTTEEEEECBTTBCSSCTTC-
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc-CCe-EEEEECCHHHHHHHH--h--------hc-ccCCceEEEcchhcCCCCCCC-
Confidence            458889999999999999998886 665 999999987444433  1        11 235899999999999876654 


Q ss_pred             ceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        133 QASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       133 d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                       +|+|++... .|.+++...+.+++++|||||++++..
T Consensus       117 -fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          117 -FEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             -EEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence             556666544 678899999999999999999999863

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.64  E-value=1.5e-15  Score=122.69  Aligned_cols=118  Identities=13%  Similarity=0.170  Sum_probs=85.2

Q ss_pred             CcHHH-HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDL-ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~-~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .+.+. ...+++.+.+.++.+|||||||+|.++..+++..+..+|+|+|+|+.++..++  ++++    ..+. ..++ +
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~~-~   79 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL--SNAI----NLGV-SDRI-A   79 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH--HHHH----TTTC-TTSE-E
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH--HHHH----HhCC-CCCE-E
Confidence            33343 35677888999999999999999999999988776667999999997555443  3332    2332 2378 8


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+ ++++....+|+|+++...+.   ...++++.++|||||++++.
T Consensus        80 ~~~d~~~-~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~  126 (178)
T 3hm2_A           80 VQQGAPR-AFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVAN  126 (178)
T ss_dssp             EECCTTG-GGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEE
T ss_pred             EecchHh-hhhccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEE
Confidence            8999865 33331124567877665544   67889999999999999986

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.64  E-value=4.8e-15  Score=128.24  Aligned_cols=121  Identities=8%  Similarity=-0.028  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCC------hhHHHHHHHHHHHHHHHhcccccc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADL------PAKYAEMHTVFKRWMQWYGKRHGE  114 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~------~~~~a~~~~~~~~~~~~~~~~~~~  114 (268)
                      ....++++.+++.++.+|||||||+|.++..+++..|. .+|+|+|+|+.      ++..++  +++.    ..+. ..+
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~--~~~~----~~~~-~~~  102 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAW--NHLL----AGPL-GDR  102 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHH--HHHH----TSTT-GGG
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHH--HHHH----hcCC-CCc
Confidence            34456888889999999999999999999999988742 45999999986      444443  3332    2222 248


Q ss_pred             EEEEEcC---CCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        115 FRLVKGD---FLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       115 i~~~~gD---~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ++++++|   ...+|++++.+|  +|++. .+.|.++....++.+.++++|||++++.+..
T Consensus       103 v~~~~~d~~~~~~~~~~~~~fD--~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          103 LTVHFNTNLSDDLGPIADQHFD--RVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             EEEECSCCTTTCCGGGTTCCCS--EEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             eEEEECChhhhccCCCCCCCEE--EEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            9999998   445666655554  55554 4467777776444444566679999987443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=8.1e-17  Score=137.42  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~  130 (268)
                      ..+|.+|||||||+|..+..+++..+. +++|||+|+.++..|+  +++.    .   ...+++++.+|+.++.  +++.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~--~~~~----~---~~~~~~~~~~~a~~~~~~~~~~  127 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR--DWAP----R---QTHKVIPLKGLWEDVAPTLPDG  127 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHH--HHGG----G---CSSEEEEEESCHHHHGGGSCTT
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHH--HHHh----h---CCCceEEEeehHHhhccccccc
Confidence            468899999999999999988875554 4999999997444433  3322    1   2347999999987643  4444


Q ss_pred             ccceEEEEEe------ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVN------NFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~------~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  +|.|+..      ..+|.++....+.+++|+|||||+|++.
T Consensus       128 ~--FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          128 H--FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             C--EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             C--CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            3  4566543      2356778889999999999999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.63  E-value=4.5e-16  Score=132.45  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             HHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ....++...+. ++++.+|||||||+|.++..+++. +.. |+|+|+|+.++..++                .+++++++
T Consensus        27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~~~~~~a~----------------~~~~~~~~   88 (240)
T 3dli_A           27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-GIE-SIGVDINEDMIKFCE----------------GKFNVVKS   88 (240)
T ss_dssp             HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH-TCC-EEEECSCHHHHHHHH----------------TTSEEECS
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC-CCc-EEEEECCHHHHHHHH----------------hhcceeec
Confidence            33344544443 567899999999999999988875 666 999999987443332                13889999


Q ss_pred             CCCCC--cccccccceEEEEEe-ccccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTE--EHREKITQASIVFVN-NFAFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l--~~~~~~~d~dvv~~~-~~~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.++  |++++.+|  +|++. .+.|.+  +....++++.++|||||++++.
T Consensus        89 d~~~~~~~~~~~~fD--~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (240)
T 3dli_A           89 DAIEYLKSLPDKYLD--GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE  139 (240)
T ss_dssp             CHHHHHHTSCTTCBS--EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred             cHHHHhhhcCCCCee--EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence            99875  66565554  55554 445666  5589999999999999999986

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.62  E-value=1.4e-16  Score=128.23  Aligned_cols=105  Identities=15%  Similarity=0.162  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+++.++.+|||||||+|.++..+++...  +++|+|+|+.++..++      +    .   .++++++++|   
T Consensus         7 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~------~----~---~~~v~~~~~d---   68 (170)
T 3i9f_A            7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVK------E----K---FDSVITLSDP---   68 (170)
T ss_dssp             TTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHH------H----H---CTTSEEESSG---
T ss_pred             HHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHH------H----h---CCCcEEEeCC---
Confidence            4566777888999999999999999999887653  5999999987444433      1    1   3489999999   


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++++++  .+|+|+++.. .|.+++...++++.++|||||++++.+
T Consensus        69 ~~~~~~--~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           69 KEIPDN--SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             GGSCTT--CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCC--ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEE
Confidence            565554  4567776655 577889999999999999999999873

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.62  E-value=4.5e-16  Score=136.80  Aligned_cols=119  Identities=14%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             HHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHH----------------
Q psy17227         46 RMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQW----------------  107 (268)
Q Consensus        46 ~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~----------------  107 (268)
                      .++..+..  .++.+|||||||+|.+++.+|..++..+|+|||+|+.++..|+  ++++.....                
T Consensus        35 ~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~--~~~~~~~~~~~~~~~~~~~~~~~~~  112 (292)
T 3g07_A           35 GRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR--QNIRHYLSEELRLPPQTLEGDPGAE  112 (292)
T ss_dssp             GGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH--HTC----------------------
T ss_pred             HHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HHHHhhhhhhccccccccccccccc
Confidence            34444433  3788999999999999999999887767999999998666554  222210000                


Q ss_pred             ---------------------hc--------------c-ccccEEEEEcCCCCCc-----ccccccceEEEEEeccccC-
Q psy17227        108 ---------------------YG--------------K-RHGEFRLVKGDFLTEE-----HREKITQASIVFVNNFAFG-  145 (268)
Q Consensus       108 ---------------------~~--------------~-~~~~i~~~~gD~~~l~-----~~~~~~d~dvv~~~~~~~~-  145 (268)
                                           .|              . -..+++|+++|+.+.+     +.+  ..+|+|++..++++ 
T Consensus       113 ~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~--~~fD~I~~~~vl~~i  190 (292)
T 3g07_A          113 GEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT--PEYDVVLCLSLTKWV  190 (292)
T ss_dssp             -----------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCC--CCEEEEEEESCHHHH
T ss_pred             cccccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccC--CCcCEEEEChHHHHh
Confidence                                 00              0 0048999999998654     223  35688888776422 


Q ss_pred             ------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        146 ------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       146 ------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                            .++...+++++++|||||+|++.
T Consensus       191 hl~~~~~~~~~~l~~~~~~LkpGG~lil~  219 (292)
T 3g07_A          191 HLNWGDEGLKRMFRRIYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  26778899999999999999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.62  E-value=7.2e-16  Score=127.90  Aligned_cols=104  Identities=24%  Similarity=0.294  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||+|||+|..+..++...+.. ++|+|+|+.++..++  +++.+    .+   .+++++++|+.++|++++. 
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~-v~~vD~s~~~~~~a~--~~~~~----~~---~~~~~~~~d~~~~~~~~~~-   89 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLKKAE--NFSRE----NN---FKLNISKGDIRKLPFKDES-   89 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCE-EEEEECCHHHHHHHH--HHHHH----HT---CCCCEEECCTTSCCSCTTC-
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCE-EEEEECCHHHHHHHH--HHHHh----cC---CceEEEECchhhCCCCCCc-
Confidence            4678899999999999855455555664 999999997555443  33321    22   4789999999998876543 


Q ss_pred             ceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +|+|++... .|.  ++....+++++++|||||++++.
T Consensus        90 -fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  127 (209)
T 2p8j_A           90 -MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN  127 (209)
T ss_dssp             -EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             567776544 555  56788899999999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.62  E-value=2e-15  Score=126.12  Aligned_cols=107  Identities=12%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +...+...++.+|||||||+|.++..+++. +. +++|+|+|+.++..++  +++.        ..++++++++|+.+++
T Consensus        43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~--~~~~--------~~~~~~~~~~d~~~~~  110 (216)
T 3ofk_A           43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CK-RLTVIDVMPRAIGRAC--QRTK--------RWSHISWAATDILQFS  110 (216)
T ss_dssp             HHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EE-EEEEEESCHHHHHHHH--HHTT--------TCSSEEEEECCTTTCC
T ss_pred             HHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CC-EEEEEECCHHHHHHHH--Hhcc--------cCCCeEEEEcchhhCC
Confidence            333567778899999999999999988875 33 5999999997544443  2221        2348999999999987


Q ss_pred             ccccccceEEEEEecc-ccCcCH---HHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNF-AFGPTV---DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~-~~~~~~---~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ++.  .+|+|+++.. .|.+++   ...+.++.++|||||.++++
T Consensus       111 -~~~--~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  153 (216)
T 3ofk_A          111 -TAE--LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG  153 (216)
T ss_dssp             -CSC--CEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCC--CccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             333  4677777655 566665   56699999999999999985

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.62  E-value=7.3e-16  Score=130.66  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=80.5

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+++.+. ..++.+|||||||+|.++..+++. +.. |+|+|+|+.++..++  +++         .. +++++++|+.
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~~~~~~a~--~~~---------~~-~v~~~~~d~~   96 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH-FND-ITCVEASEEAISHAQ--GRL---------KD-GITYIHSRFE   96 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT-CSC-EEEEESCHHHHHHHH--HHS---------CS-CEEEEESCGG
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh-CCc-EEEEeCCHHHHHHHH--Hhh---------hC-CeEEEEccHH
Confidence            33444442 457788999999999999988875 444 999999987444433  111         11 8999999998


Q ss_pred             CCcccccccceEEEEEecc-ccCcCHHHHHHHHH-hcCCCCcEEEEeC
Q psy17227        124 TEEHREKITQASIVFVNNF-AFGPTVDHALKERF-QDLKDGARIVSSK  169 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~-r~LkpGG~~i~~~  169 (268)
                      +++ +++  .+|+|++... .|.+++...++++. |+|||||+++++.
T Consensus        97 ~~~-~~~--~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A           97 DAQ-LPR--RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             GCC-CSS--CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HcC-cCC--cccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence            873 344  3566766555 67889999999999 9999999999874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.61  E-value=1.8e-15  Score=127.29  Aligned_cols=107  Identities=22%  Similarity=0.330  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc---cccEEEEEcCCCCCcccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR---HGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~i~~~~gD~~~l~~~~  129 (268)
                      +.++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  +++.    ..+..   ..+++++++|+.++++++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK-GYS-VTGIDINSEAIRLAE--TAAR----SPGLNQKTGGKAEFKVENASSLSFHD   99 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHTT----CCSCCSSSSCEEEEEECCTTSCCSCT
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC-CCe-EEEEECCHHHHHHHH--HHHH----hcCCccccCcceEEEEecccccCCCC
Confidence            458899999999999999998886 554 999999997544443  2221    11211   126899999999988765


Q ss_pred             cccceEEEEEecc-ccCcCHH---HHHHHHHhcCCCCcEEEEeC
Q psy17227        130 KITQASIVFVNNF-AFGPTVD---HALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       130 ~~~d~dvv~~~~~-~~~~~~~---~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ..  +|+|+++.. .|.++..   ..++++.++|||||++++.+
T Consensus       100 ~~--~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          100 SS--FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             TC--EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Cc--eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            54  566666554 5677776   88999999999999999863

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.61  E-value=4.6e-15  Score=126.28  Aligned_cols=114  Identities=14%  Similarity=0.135  Sum_probs=80.7

Q ss_pred             HHHHHHHHc---CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQI---NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l---~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ....++..+   ++++|++|||||||+|..+..+|...+ ..+|+|+|+|+.|+  ..+.+.+++        ..++.++
T Consensus        61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l--~~l~~~a~~--------r~nv~~i  130 (232)
T 3id6_C           61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV--RELLLVAQR--------RPNIFPL  130 (232)
T ss_dssp             HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHH--HHHHHHHHH--------CTTEEEE
T ss_pred             HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHH--HHHHHHhhh--------cCCeEEE
Confidence            344555554   489999999999999999999998765 44699999999742  222222221        2489999


Q ss_pred             EcCCCCCcccc-cccceEEEEEeccccCcCHHHHHHH-HHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHRE-KITQASIVFVNNFAFGPTVDHALKE-RFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e-~~r~LkpGG~~i~~  168 (268)
                      ++|+.+.+... ....+|+|+++...  ++....+.+ +.+.|||||+|++.
T Consensus       131 ~~Da~~~~~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          131 LADARFPQSYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             ECCTTCGGGTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcccccchhhhccccceEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99998754211 12357899987543  566666554 45599999999976

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.61  E-value=4.9e-16  Score=135.84  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+...++.+|||||||+|..+..++.. +. +|+|+|+|+.++..++  +++.+..  ......++.+.++|+.+
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~--~~~~~~~--~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GF-SVTSVDASDKMLKYAL--KERWNRR--KEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TC-EEEEEESCHHHHHHHH--HHHHHTT--TSHHHHTCEEEECCGGG
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CC-eEEEEECCHHHHHHHH--Hhhhhcc--cccccceeeEeecChhh
Confidence            44555666678899999999999999998876 55 4999999998655554  2221100  00012478999999998


Q ss_pred             Cc---ccccccceEEEEEe--ccccCcC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE---HREKITQASIVFVN--NFAFGPT-------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~---~~~~~~d~dvv~~~--~~~~~~~-------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++   ++++  .+|+|++.  .+.|.++       ....+++++++|||||++++.
T Consensus       121 ~~~~~~~~~--~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          121 LDKDVPAGD--GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             HHHHSCCTT--CEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CccccccCC--CeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            87   5554  45677774  4567788       899999999999999999976

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=2.7e-16  Score=133.70  Aligned_cols=111  Identities=11%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...+ ..++.+|||||||+|.++..+++ .+..+|+|+|+|+.|+..++  ++++    ..   ..+++++++|+.+
T Consensus        51 ~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~-~~~~~v~gvD~s~~~l~~a~--~~~~----~~---~~~v~~~~~d~~~  119 (236)
T 1zx0_A           51 HALAAAA-SSKGGRVLEVGFGMAIAASKVQE-APIDEHWIIECNDGVFQRLR--DWAP----RQ---THKVIPLKGLWED  119 (236)
T ss_dssp             HHHHHHH-TTTCEEEEEECCTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHH--HHGG----GC---SSEEEEEESCHHH
T ss_pred             HHHHhhc-CCCCCeEEEEeccCCHHHHHHHh-cCCCeEEEEcCCHHHHHHHH--HHHH----hc---CCCeEEEecCHHH
Confidence            3344433 57889999999999999998865 34446999999997555443  2221    11   2479999999998


Q ss_pred             C--cccccccceEEEEEecc------ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E--EHREKITQASIVFVNNF------AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l--~~~~~~~d~dvv~~~~~------~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  |++++.  +|+|+++.+      .+..+....+++++|+|||||++++.
T Consensus       120 ~~~~~~~~~--fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          120 VAPTLPDGH--FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             HGGGSCTTC--EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             hhcccCCCc--eEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            7  776654  566766211      12333456789999999999999976

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.61  E-value=9.3e-16  Score=124.28  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=84.2

Q ss_pred             CcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +.......+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.++..++  ++++    ..+. ..++++
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~~~~   85 (177)
T 2esr_A           14 TSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQ--DNII----MTKA-ENRFTL   85 (177)
T ss_dssp             ----CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHH--HHHH----TTTC-GGGEEE
T ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCceEE
Confidence            33344556777776 678899999999999999998876 6556999999997555543  3332    2232 247999


Q ss_pred             EEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        118 VKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      +++|+.+ ++..+.  .+|+|+++..++.......+..+.  ++|||||++++.
T Consensus        86 ~~~d~~~~~~~~~~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~  137 (177)
T 2esr_A           86 LKMEAERAIDCLTG--RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  137 (177)
T ss_dssp             ECSCHHHHHHHBCS--CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EECcHHHhHHhhcC--CCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEE
Confidence            9999987 343222  478898876654444556666776  999999999985

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.61  E-value=6e-16  Score=128.72  Aligned_cols=119  Identities=12%  Similarity=0.020  Sum_probs=83.2

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ....+++.+.. .++.+|||+|||+|.+++.++.. +...|+|+|+|+.++..++  ++++    ..+....+++++++|
T Consensus        40 ~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~--~~~~----~~~~~~~~v~~~~~d  112 (201)
T 2ift_A           40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLK--KNLQ----TLKCSSEQAEVINQS  112 (201)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHH--HHHH----HTTCCTTTEEEECSC
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHH--HHHH----HhCCCccceEEEECC
Confidence            33445555443 26789999999999999987665 5556999999998555544  3333    233211489999999


Q ss_pred             CCCCcccccccc-eEEEEEeccccCcCHHHHHHHH--HhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQ-ASIVFVNNFAFGPTVDHALKER--FQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d-~dvv~~~~~~~~~~~~~~l~e~--~r~LkpGG~~i~~  168 (268)
                      +.++........ +|+|+++..++..+....+..+  .++|||||++++.
T Consensus       113 ~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~  162 (201)
T 2ift_A          113 SLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  162 (201)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEE
Confidence            977532111135 7889888776656677778888  6789999999875

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.61  E-value=4.6e-15  Score=120.75  Aligned_cols=126  Identities=18%  Similarity=0.116  Sum_probs=90.7

Q ss_pred             CcccCcHHHHHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         35 VYGETSFDLISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        35 ~~g~~~~~~~~~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      .+.+........+++.+ ...++.+|||+|||+|.++..++. .+..+|+|+|+|+.++..++  ++++    ..+. ..
T Consensus        23 ~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~   94 (187)
T 2fhp_A           23 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIK--ENIA----ITKE-PE   94 (187)
T ss_dssp             SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHHH----HHTC-GG
T ss_pred             CcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHH--HHHH----HhCC-Cc
Confidence            44556666777778777 456889999999999999998877 45556999999997555544  3333    2232 24


Q ss_pred             cEEEEEcCCCCCcc--cccccceEEEEEeccccCcCHHHHHHHH--HhcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTEEH--REKITQASIVFVNNFAFGPTVDHALKER--FQDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l~~--~~~~~d~dvv~~~~~~~~~~~~~~l~e~--~r~LkpGG~~i~~  168 (268)
                      +++++++|+.+...  +.....+|+|+++..++.......+..+  .++|||||++++.
T Consensus        95 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~  153 (187)
T 2fhp_A           95 KFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  153 (187)
T ss_dssp             GEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEE
Confidence            79999999987321  1112357889888665555667777777  8899999999975

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.61  E-value=6.8e-16  Score=131.37  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=79.3

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .++.+|||||||+|.++..+++.. ...++|+|+|+.++..++  +++.    ..+  ..+++++++|+.+++++++  .
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~d~~~~~~~~~--~  146 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAK--TYLG----EEG--KRVRNYFCCGLQDFTPEPD--S  146 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHH--HHTG----GGG--GGEEEEEECCGGGCCCCSS--C
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHH--HHhh----hcC--CceEEEEEcChhhcCCCCC--C
Confidence            368899999999999999887765 445999999997544443  2221    111  2479999999998886544  4


Q ss_pred             eEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        134 ASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       134 ~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +|+|++... .|.++  ....++++.++|||||++++.++.
T Consensus       147 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            567777655 45555  458899999999999999987443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=2e-15  Score=126.60  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||||||+|.++..+++.. . +++|+|+|+.++..++  +++..    .+   .+++++++|+.++++++.  
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~--~~~~~----~~---~~~~~~~~d~~~~~~~~~--  102 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYG-F-EVVGVDISEDMIRKAR--EYAKS----RE---SNVEFIVGDARKLSFEDK--  102 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-C-EEEEEESCHHHHHHHH--HHHHH----TT---CCCEEEECCTTSCCSCTT--
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcC-C-EEEEEECCHHHHHHHH--HHHHh----cC---CCceEEECchhcCCCCCC--
Confidence            3458899999999999999888764 4 5999999987555443  33321    12   579999999999876544  


Q ss_pred             ceEEEEEecc--cc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNF--AF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~--~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++..  ++ .++....++++.++|||||++++.
T Consensus       103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  141 (227)
T 1ve3_A          103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  141 (227)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4577777665  33 346778899999999999999986

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.60  E-value=1.3e-14  Score=130.83  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ....+++.+++.++.+|||||||+|.++..+++.++..+++|+|+ +.++..++  +++.    ..+. ..+++++++|+
T Consensus       178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~  249 (359)
T 1x19_A          178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN--ENAA----EKGV-ADRMRGIAVDI  249 (359)
T ss_dssp             HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH--HHHH----HTTC-TTTEEEEECCT
T ss_pred             hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHH--HHHH----hcCC-CCCEEEEeCcc
Confidence            345677888888999999999999999999999876656999999 87555443  3333    2333 24699999999


Q ss_pred             CCCcccccccceEEEEEeccc-cCcC--HHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNFA-FGPT--VDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~-~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      .+.|+++    .|+|++..++ ++++  ....++++.++|||||++++.+...+
T Consensus       250 ~~~~~~~----~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          250 YKESYPE----ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             TTSCCCC----CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             ccCCCCC----CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            9887643    2677766664 5655  67889999999999999988754443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=7e-15  Score=119.82  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=87.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .....+++.+...++.+|||+|||+|.++..+++. +. +++|+|+|+.++..++  +++.    ..+....+++++++|
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~--~~~~----~~~~~~~~~~~~~~d  110 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VK-STTMADINRRAIKLAK--ENIK----LNNLDNYDIRVVHSD  110 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SS-EEEEEESCHHHHHHHH--HHHH----HTTCTTSCEEEEECS
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CC-eEEEEECCHHHHHHHH--HHHH----HcCCCccceEEEECc
Confidence            45677888888889999999999999999988876 55 4999999997555443  3332    223221139999999


Q ss_pred             CCCCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.. .+  ..+|+|+++..++.  .+....+.++.++|||||++++.
T Consensus       111 ~~~~~-~~--~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  156 (194)
T 1dus_A          111 LYENV-KD--RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TTTTC-TT--SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccc-cc--CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98733 22  24688888776554  45677899999999999999986

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.60  E-value=3.4e-15  Score=132.96  Aligned_cols=120  Identities=14%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             HHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         43 LISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        43 ~~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ....+++.+++  .++.+|||||||+|.++..+++.++..+++|+|+| .++..++  +++.    ..+. ..+++|+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~--~~~~----~~~~-~~~v~~~~~  222 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAK--ENAR----IQGV-ASRYHTIAG  222 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHH--HHHH----HHTC-GGGEEEEES
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHH--HHHH----hcCC-CcceEEEec
Confidence            34567777887  88899999999999999999988766569999999 7555443  3332    2333 247999999


Q ss_pred             CCCCCcccccccceEEEEEeccc-cCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        121 DFLTEEHREKITQASIVFVNNFA-FGP--TVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~-~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      |+.+.++++.   +|+|++...+ +++  +....++++.++|||||++++.+...+
T Consensus       223 d~~~~~~~~~---~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          223 SAFEVDYGND---YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             CTTTSCCCSC---EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             ccccCCCCCC---CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            9998776432   6788876664 453  346889999999999999998755443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.60  E-value=9.1e-16  Score=135.41  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHH-HHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVA-AATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la-~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      ..+.++.+|||||||+|..+..+| ...+..+|+|+|+|+.++..++  +++.    ..+. ..+++++++|+.++|++ 
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~-  185 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT--RLAA----GHAL-AGQITLHRQDAWKLDTR-  185 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHH--HHHT----TSTT-GGGEEEEECCGGGCCCC-
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEECchhcCCcc-
Confidence            357889999999999999999885 3344446999999997544443  3322    2232 24699999999998875 


Q ss_pred             cccceEEEEEecc-ccCcCHHH---HHHHHHhcCCCCcEEEEeCC
Q psy17227        130 KITQASIVFVNNF-AFGPTVDH---ALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       130 ~~~d~dvv~~~~~-~~~~~~~~---~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +  .+|+|+++.. +|.++...   .++++.++|||||++++.+.
T Consensus       186 ~--~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          186 E--GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             S--CEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             C--CeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            3  4677887654 56677665   58999999999999998743

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.60  E-value=1e-15  Score=129.78  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCC-CChhHHH-HHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKA-DLPAKYA-EMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s-~~~~~~a-~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      ..++.+|||||||+|.++..+|+..+...|+|||+| +.|+..| .+++++.    ..+  ..+++|+++|+.++|.  .
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~----~~~--~~~v~~~~~d~~~l~~--~   93 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPS----KGG--LSNVVFVIAAAESLPF--E   93 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGG----GTC--CSSEEEECCBTTBCCG--G
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH----HcC--CCCeEEEEcCHHHhhh--h
Confidence            468889999999999999999876665569999999 4433443 1222211    222  2489999999999873  2


Q ss_pred             ccc-eEEEEEeccccCc--------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQ-ASIVFVNNFAFGP--------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d-~dvv~~~~~~~~~--------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++ +|.+.++.  .++        +....+.+++|+|||||++++.
T Consensus        94 ~~d~v~~i~~~~--~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~  138 (225)
T 3p2e_A           94 LKNIADSISILF--PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV  138 (225)
T ss_dssp             GTTCEEEEEEES--CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccCeEEEEEEeC--CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence            223 34444432  222        2345789999999999999884

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.60  E-value=1e-15  Score=134.30  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHH----HHhCCcEE--EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVA----AATGCKIC--WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la----~~~~~~~v--~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ..++.+|||||||+|.++..++    ...+...+  +|+|+|+.|+..++  +++.+   ..+....++.+.++++.+++
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~--~~~~~---~~~~~~v~~~~~~~~~~~~~  124 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK--ELVAK---TSNLENVKFAWHKETSSEYQ  124 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH--HHHHT---CSSCTTEEEEEECSCHHHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH--HHHHh---ccCCCcceEEEEecchhhhh
Confidence            4677899999999998765433    33333323  99999998555543  32221   01211113455666665543


Q ss_pred             ------ccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 ------HREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ------~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                            ++++.  +|+|++.. ++|.+++...+++++|+|||||++++.
T Consensus       125 ~~~~~~~~~~~--fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          125 SRMLEKKELQK--WDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             HHHHTTTCCCC--EEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhccccCCCc--eeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence                  23443  56666654 468899999999999999999999986

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.59  E-value=2e-15  Score=131.71  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-ccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-REK  130 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~~  130 (268)
                      .+.++.+|||||||+|.++..+++. +...++|+|+|+.++..++  +++.    ..+. ..+++++++|+.++|+ .++
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~~~  132 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDAR--VRAR----NMKR-RFKVFFRAQDSYGRHMDLGK  132 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHH--HHHH----TSCC-SSEEEEEESCTTTSCCCCSS
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH--HHHH----hcCC-CccEEEEECCccccccCCCC
Confidence            3678899999999999999987765 6546999999997554443  3322    1222 1479999999999887 343


Q ss_pred             ccceEEEEEecccc-----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAF-----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~-----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        .+|+|++...+|     .++....++++.++|||||++++.
T Consensus       133 --~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  173 (298)
T 1ri5_A          133 --EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  173 (298)
T ss_dssp             --CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              467777765543     355778899999999999999986

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.59  E-value=2.9e-15  Score=126.37  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c--ccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E--HREKI  131 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~--~~~~~  131 (268)
                      ++.+|||||||+|.++..+|+..+...|+|||+|+.++..++  ++++    ..+.  .+++++++|+.++ +  ++++ 
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~--~~~~----~~~l--~nv~~~~~Da~~~l~~~~~~~-  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACL--ASAH----EEGL--SNLRVMCHDAVEVLHKMIPDN-  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHH--HHHH----HTTC--SSEEEECSCHHHHHHHHSCTT-
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHH--HHHH----HhCC--CcEEEEECCHHHHHHHHcCCC-
Confidence            678999999999999999999877667999999997444433  3333    2332  4799999999874 3  4444 


Q ss_pred             cceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+|.|+++....++..         ...+.++.++|||||.|++.
T Consensus       105 -~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          105 -SLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             -CEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -ChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence             4566776532222221         14889999999999999875

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.59  E-value=7.6e-15  Score=125.23  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=76.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc--ccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE--HRE  129 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~--~~~  129 (268)
                      ..++.+|||||||+|.+++.+|+..+...++|||+|+.|+..|+  +++++..........+++++++|+.+ ++  +++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~--~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQ--DRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHH--HHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHH--HHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC
Confidence            45677899999999999999998876666999999998666554  32221100000123589999999987 66  544


Q ss_pred             cccceEEEEEeccccCcC---------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPT---------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~---------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  .+|.|+++....++.         ....+.++.++|||||.|++.
T Consensus       122 ~--~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          122 G--QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             T--CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             c--CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            4  356676642211111         136789999999999999875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.59  E-value=3.3e-15  Score=126.62  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             HHHH---HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         44 ISRM---IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        44 ~~~l---l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +..+   ++.+++.++.+|||||||+|.++..+++..|..+|+|+|+|+.++..++  ++++        ...++.++++
T Consensus        60 ~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~--~~~~--------~~~~v~~~~~  129 (230)
T 1fbn_A           60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--DACA--------ERENIIPILG  129 (230)
T ss_dssp             HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH--HHTT--------TCTTEEEEEC
T ss_pred             HHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH--HHhh--------cCCCeEEEEC
Confidence            3556   5666788999999999999999999999877556999999997444433  2222        1258999999


Q ss_pred             CCCC----CcccccccceEEEEEeccccCcCH---HHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLT----EEHREKITQASIVFVNNFAFGPTV---DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~----l~~~~~~~d~dvv~~~~~~~~~~~---~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.+    +++. .  .+|+|+.+    .+++   ...+.++.++|||||++++.
T Consensus       130 d~~~~~~~~~~~-~--~~D~v~~~----~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          130 DANKPQEYANIV-E--KVDVIYED----VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CTTCGGGGTTTS-C--CEEEEEEC----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCcccccccC-c--cEEEEEEe----cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9998    5543 2  46777732    2333   66699999999999999985

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.59  E-value=5.8e-15  Score=121.57  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+....++++++|||+|||+|.++..+++..+ ..+++|+|+|+.++..++  ++++    ..+. ..+++++++|+.+
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~   85 (197)
T 3eey_A           13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTT--KKLT----DLNL-IDRVTLIKDGHQN   85 (197)
T ss_dssp             HHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHH--HHHH----HTTC-GGGEEEECSCGGG
T ss_pred             HHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCCeEEEECCHHH
Confidence            344455678999999999999999999998864 346999999997555443  3333    2333 2589999999988


Q ss_pred             Cc-ccccccceEEEEEeccccC----------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE-HREKITQASIVFVNNFAFG----------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~-~~~~~~d~dvv~~~~~~~~----------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++ +.+  ..+|+|+++..++.          .+....++++.++|||||++++.
T Consensus        86 ~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~  138 (197)
T 3eey_A           86 MDKYID--CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV  138 (197)
T ss_dssp             GGGTCC--SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Hhhhcc--CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence            76 333  35678887754321          13456899999999999999976

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=2.2e-15  Score=127.64  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+..++..+.+.++ +|||||||+|.++..++. .+. +|+|+|+|+.++..++  +++.    ..+. ..+++|+++|
T Consensus        54 ~~l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d  123 (235)
T 3lcc_A           54 PLIVHLVDTSSLPLG-RALVPGCGGGHDVVAMAS-PER-FVVGLDISESALAKAN--ETYG----SSPK-AEYFSFVKED  123 (235)
T ss_dssp             HHHHHHHHTTCSCCE-EEEEETCTTCHHHHHHCB-TTE-EEEEECSCHHHHHHHH--HHHT----TSGG-GGGEEEECCC
T ss_pred             HHHHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHh-CCC-eEEEEECCHHHHHHHH--HHhh----ccCC-CcceEEEECc
Confidence            455667777766665 999999999999998865 344 4999999997555443  3222    1111 2479999999


Q ss_pred             CCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+++.. .  .+|+|++..+ .|.+  +....++++.++|||||++++.
T Consensus       124 ~~~~~~~-~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  170 (235)
T 3lcc_A          124 VFTWRPT-E--LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITL  170 (235)
T ss_dssp             TTTCCCS-S--CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCCCC-C--CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEE
Confidence            9997743 2  4677877665 4455  7888899999999999999975

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=4e-15  Score=126.68  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=79.5

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc-
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI-  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~-  131 (268)
                      +.++.+|||||||+|..+..+++... . |+|+|+|+.++..++  +++         ...+++++++|+.++++.... 
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~-v~gvD~s~~~~~~a~--~~~---------~~~~~~~~~~d~~~~~~~~~~~  120 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-R-VIGLDVSKSALEIAA--KEN---------TAANISYRLLDGLVPEQAAQIH  120 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-C-EEEEESCHHHHHHHH--HHS---------CCTTEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-C-EEEEECCHHHHHHHH--HhC---------cccCceEEECcccccccccccc
Confidence            57888999999999999999988654 4 999999997544443  211         134899999999997754321 


Q ss_pred             --cceEEEEEeccc-cCc--CHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        132 --TQASIVFVNNFA-FGP--TVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       132 --~d~dvv~~~~~~-~~~--~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                        ..+|+|+++.++ |.+  +....++++.++|||||++++.+.
T Consensus       121 ~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          121 SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence              125678777664 555  678899999999999999887643

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.59  E-value=3.2e-15  Score=131.40  Aligned_cols=116  Identities=12%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~  119 (268)
                      ...+..+++.+...++ +|||||||+|.++..+++. +.. |+|+|+|+.++..++  +++.    ..+.. ..++++++
T Consensus        69 ~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~-v~gvD~s~~~~~~a~--~~~~----~~~~~~~~~v~~~~  139 (299)
T 3g2m_A           69 TSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWE-VTALELSTSVLAAFR--KRLA----EAPADVRDRCTLVQ  139 (299)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCC-EEEEESCHHHHHHHH--HHHH----TSCHHHHTTEEEEE
T ss_pred             cHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCe-EEEEECCHHHHHHHH--HHHh----hcccccccceEEEe
Confidence            4456677888776555 8999999999999998876 665 999999997555543  3322    11100 14799999


Q ss_pred             cCCCCCcccccccceEEEEE-eccccCc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFV-NNFAFGP---TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~-~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.++|+ +.  .+|+|++ ..+++..   +....++++.++|||||++++.
T Consensus       140 ~d~~~~~~-~~--~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  189 (299)
T 3g2m_A          140 GDMSAFAL-DK--RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLS  189 (299)
T ss_dssp             CBTTBCCC-SC--CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhcCCc-CC--CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            99999887 33  4565654 3444433   3578899999999999999986

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.58  E-value=9.9e-16  Score=132.53  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH-------------HHHHhcc--------
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR-------------WMQWYGK--------  110 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~-------------~~~~~~~--------  110 (268)
                      +..++.+|||||||+|.++..++. .+..+|+|+|+|+.|+..++  +++++             .+...+.        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~-~~~~~v~g~D~s~~~l~~a~--~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~  128 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAAC-DSFQDITLSDFTDRNREELE--KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE  128 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHH--HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHH-hhhcceeeccccHHHHHHHH--HHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence            567889999999999988775544 46656999999998666654  22211             0000000        


Q ss_pred             --ccccEE-EEEcCCCCC-cccc-cccceEEEEEeccccC-----cCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        111 --RHGEFR-LVKGDFLTE-EHRE-KITQASIVFVNNFAFG-----PTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       111 --~~~~i~-~~~gD~~~l-~~~~-~~~d~dvv~~~~~~~~-----~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                        ...+++ ++++|+.+. |+.. ....+|+|+++..+|.     +++...+++++++|||||+|+++.
T Consensus       129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              012455 999999984 4321 1125678887765432     456788999999999999999873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.58  E-value=9.8e-15  Score=121.41  Aligned_cols=111  Identities=18%  Similarity=0.164  Sum_probs=84.2

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+..+..+++.+++.++.+|||||||+|.++..+++. +. +|+|+|+|+.++..++  +++.    ..+  ..++++++
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~--~~~~----~~~--~~~v~~~~  131 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQ-HVCSVERIKGLQWQAR--RRLK----NLD--LHNVSTRH  131 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEEESCHHHHHHHH--HHHH----HTT--CCSEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEecCHHHHHHHH--HHHH----HcC--CCceEEEE
Confidence            4556778889999999999999999999999999887 44 4999999997544443  3333    233  24799999


Q ss_pred             cCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+.+..+.  .+|+|+++..+ +.++      ++.+.|||||++++.
T Consensus       132 ~d~~~~~~~~~--~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          132 GDGWQGWQARA--PFDAIIVTAAPPEIPT------ALMTQLDEGGILVLP  173 (210)
T ss_dssp             SCGGGCCGGGC--CEEEEEESSBCSSCCT------HHHHTEEEEEEEEEE
T ss_pred             CCcccCCccCC--CccEEEEccchhhhhH------HHHHhcccCcEEEEE
Confidence            99988654433  46778876553 4443      678999999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.58  E-value=2.7e-15  Score=129.17  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||||||+|.++..+++. +. +|+|+|+|+.++..++  ++           ..+++++++|+.++++ +.  
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~--~~-----------~~~~~~~~~d~~~~~~-~~--  109 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADS-FG-TVEGLELSADMLAIAR--RR-----------NPDAVLHHGDMRDFSL-GR--  109 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTT-SS-EEEEEESCHHHHHHHH--HH-----------CTTSEEEECCTTTCCC-SC--
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHc-CC-eEEEEECCHHHHHHHH--hh-----------CCCCEEEECChHHCCc-cC--
Confidence            356789999999999999988775 44 4999999987444433  11           2379999999999887 33  


Q ss_pred             ceEEEEEec-c-ccCc---CHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        133 QASIVFVNN-F-AFGP---TVDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       133 d~dvv~~~~-~-~~~~---~~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      .+|+|++.. . .|.+   +....++++.++|||||++++.....|.
T Consensus       110 ~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  156 (263)
T 3pfg_A          110 RFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE  156 (263)
T ss_dssp             CEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             CcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence            467777764 4 4553   5667899999999999999996443343

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.58  E-value=1e-14  Score=120.47  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=80.6

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+..++..+  .++ +|||||||+|.++..+++. +. +++|+|+|+.++..++  +++..    .+   .+++++++|
T Consensus        19 ~~l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~--~~~~~----~~---~~~~~~~~d   84 (202)
T 2kw5_A           19 DFLVSVANQI--PQG-KILCLAEGEGRNACFLASL-GY-EVTAVDQSSVGLAKAK--QLAQE----KG---VKITTVQSN   84 (202)
T ss_dssp             SSHHHHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TC-EEEEECSSHHHHHHHH--HHHHH----HT---CCEEEECCB
T ss_pred             HHHHHHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CC-eEEEEECCHHHHHHHH--HHHHh----cC---CceEEEEcC
Confidence            3455566654  466 9999999999999988775 66 4999999987554443  33321    22   279999999


Q ss_pred             CCCCcccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.++++++..+  |+|++...++. .+....+.++.++|||||++++.
T Consensus        85 ~~~~~~~~~~f--D~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  130 (202)
T 2kw5_A           85 LADFDIVADAW--EGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILE  130 (202)
T ss_dssp             TTTBSCCTTTC--SEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred             hhhcCCCcCCc--cEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99988765544  55665433222 45778899999999999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.58  E-value=1.3e-15  Score=126.78  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+..++..  +.++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++  ++            .+++++++|
T Consensus        32 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~--~~------------~~~~~~~~d   93 (211)
T 3e23_A           32 ATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFD-VDATDGSPELAAEAS--RR------------LGRPVRTML   93 (211)
T ss_dssp             HHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HH------------HTSCCEECC
T ss_pred             HHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCe-EEEECCCHHHHHHHH--Hh------------cCCceEEee
Confidence            344555554  457889999999999999998876 554 999999987444433  11            156789999


Q ss_pred             CCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+++ .+.  .+|+|+++.. .|.+  +....++++.++|||||++++.
T Consensus        94 ~~~~~-~~~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  140 (211)
T 3e23_A           94 FHQLD-AID--AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYAS  140 (211)
T ss_dssp             GGGCC-CCS--CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccCC-CCC--cEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99888 333  4677777655 4555  6788999999999999999986

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.58  E-value=8.5e-15  Score=122.88  Aligned_cols=105  Identities=19%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~  131 (268)
                      .++.+|||||||+|.+++.+|+..+...++|||+|+.++..++  +++.    ..+.  .+++++++|+.+++  ++++.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~--~~~~----~~~~--~nv~~~~~d~~~l~~~~~~~~  108 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV--QKVK----DSEA--QNVKLLNIDADTLTDVFEPGE  108 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH--HHHH----HSCC--SSEEEECCCGGGHHHHCCTTS
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH--HHHH----HcCC--CCEEEEeCCHHHHHhhcCcCC
Confidence            4678999999999999999999876666999999998555543  3333    2332  48999999999876  44443


Q ss_pred             cceEEEEEeccccCcC---------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPT---------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~---------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +|.|+++....++.         ....+.++.++|||||.|++.
T Consensus       109 --~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          109 --VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             --CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             --cCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence              45666643222221         256789999999999999875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.58  E-value=1.6e-14  Score=129.76  Aligned_cols=110  Identities=19%  Similarity=0.301  Sum_probs=82.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+.+.+.+.++.+|||||||+|.++..+++. |..+|+|+|+|+ ++..++  ++++    ..+. ..+++++++|+.++
T Consensus        55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~--~~~~----~~~~-~~~i~~~~~d~~~~  125 (340)
T 2fyt_A           55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAM--DIIR----LNKL-EDTITLIKGKIEEV  125 (340)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHH--HHHH----HTTC-TTTEEEEESCTTTS
T ss_pred             HHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHH--HHHH----HcCC-CCcEEEEEeeHHHh
Confidence            3555566788999999999999999988875 665699999996 554443  3333    2333 25899999999998


Q ss_pred             cccccccceEEEEEecc----ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        126 EHREKITQASIVFVNNF----AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~----~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      ++++.  .+|+|+++..    .+..++...+.++.++|||||+++
T Consensus       126 ~~~~~--~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          126 HLPVE--KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCSCS--CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCCC--cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            87643  4678887652    234456778899999999999998

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.58  E-value=5.5e-15  Score=128.88  Aligned_cols=109  Identities=12%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.+...++.+|||||||+|.++..+++. +.. |+|+|+|+.++..++  +++.    ..+   .+++++++|+.++
T Consensus       111 ~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~-v~~vD~s~~~~~~a~--~~~~----~~~---~~~~~~~~d~~~~  179 (286)
T 3m70_A          111 DVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYD-VTSWDHNENSIAFLN--ETKE----KEN---LNISTALYDINAA  179 (286)
T ss_dssp             HHHHHHHHSCSCEEEEESCTTCHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HTT---CCEEEEECCGGGC
T ss_pred             HHHHHhhccCCCcEEEECCCCCHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HHHH----HcC---CceEEEEeccccc
Confidence            3444554458899999999999999998886 664 999999997554443  3332    222   2899999999987


Q ss_pred             cccccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++ +.  .+|+|+++..+ |.  ++....++++.++|||||++++.
T Consensus       180 ~~-~~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          180 NI-QE--NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             CC-CS--CEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-cC--CccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            76 33  46778877654 33  44668899999999999997765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.58  E-value=1.4e-15  Score=127.18  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=84.1

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+...++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++      +        ..++.++++|+.+
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~------~--------~~~~~~~~~~~~~  105 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIE-AVGVDGDRTLVDAAR------A--------AGAGEVHLASYAQ  105 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCE-EEEEESCHHHHHHHH------H--------TCSSCEEECCHHH
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCE-EEEEcCCHHHHHHHH------H--------hcccccchhhHHh
Confidence            34666666677799999999999999988876 665 999999987444433      1        1467889999887


Q ss_pred             C---cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 E---EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 l---~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +   ++..+ ..+|+|+++..++.+++...++++.++|||||++++..
T Consensus       106 ~~~~~~~~~-~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A          106 LAEAKVPVG-KDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             HHTTCSCCC-CCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcccccccC-CCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEe
Confidence            6   43322 23788888877678889999999999999999999873

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.57  E-value=1.1e-15  Score=133.80  Aligned_cols=121  Identities=13%  Similarity=0.034  Sum_probs=78.8

Q ss_pred             HHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH-------------HHHHhc
Q psy17227         45 SRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR-------------WMQWYG  109 (268)
Q Consensus        45 ~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~-------------~~~~~~  109 (268)
                      ..+.+.+..  .++.+|||||||+|..+..++...+. .|+|+|+|+.|+..++  +++++             .+...+
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~-~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~~v~~~~~  135 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELG--RWLQEEPGAFNWSMYSQHACLIEG  135 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHH--HHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCC-eEEEeCCCHHHHHHHH--HHHhhCcccccchhhhhHHHHhcC
Confidence            445555432  37889999999999965444433344 5999999998655544  22110             000011


Q ss_pred             c-----------ccccEEEEEcCCCC-Ccccccc---cceEEEEEeccc-c----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 K-----------RHGEFRLVKGDFLT-EEHREKI---TQASIVFVNNFA-F----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 ~-----------~~~~i~~~~gD~~~-l~~~~~~---~d~dvv~~~~~~-~----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .           ....++++++|+.+ +|+.+..   ..+|+|+++..+ |    .+++...+++++|+|||||+|++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            0           01137889999998 7754321   237888877664 4    346889999999999999999986

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.57  E-value=2.7e-14  Score=119.43  Aligned_cols=105  Identities=17%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~  131 (268)
                      .++.+|||||||+|.+++.+|+..+...++|||+|+.++..++  +++.    ..+.  .+++++++|+.+++  +++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~--~~~~----~~~~--~~v~~~~~d~~~~~~~~~~~~  111 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL--DKVL----EVGV--PNIKLLWVDGSDLTDYFEDGE  111 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHH----HHCC--SSEEEEECCSSCGGGTSCTTC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHH--HHHH----HcCC--CCEEEEeCCHHHHHhhcCCCC
Confidence            4678999999999999999999876656999999997555543  3333    2333  58999999999876  54443


Q ss_pred             cceEEEEEeccccCcC---------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPT---------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~---------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +|+|+++....++.         ....+.++.++|||||.+++.
T Consensus       112 --~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          112 --IDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             --CSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             --CCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence              56677763322221         256889999999999999875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.57  E-value=8.6e-15  Score=124.08  Aligned_cols=107  Identities=20%  Similarity=0.250  Sum_probs=79.2

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-  125 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-  125 (268)
                      ++.+++.++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+  +..+.+.+++        ..+++++++|+.+. 
T Consensus        70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~--i~~~~~~a~~--------~~~v~~~~~d~~~~~  139 (233)
T 2ipx_A           70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRS--GRDLINLAKK--------RTNIIPVIEDARHPH  139 (233)
T ss_dssp             CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHH--HHHHHHHHHH--------CTTEEEECSCTTCGG
T ss_pred             HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHH--HHHHHHHhhc--------cCCeEEEEcccCChh
Confidence            3456788999999999999999999999873 3469999999863  3334444432        25899999999984 


Q ss_pred             --cccccccceEEEEEeccccCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227        126 --EHREKITQASIVFVNNFAFGPTV-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 --~~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ++.+  ..+|+|+++..  .++. ...+.++.++|||||++++.
T Consensus       140 ~~~~~~--~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          140 KYRMLI--AMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             GGGGGC--CCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccC--CcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEE
Confidence              3333  34688888644  3333 34478899999999999985

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.57  E-value=4.6e-15  Score=126.51  Aligned_cols=106  Identities=12%  Similarity=0.047  Sum_probs=80.7

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-c
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-K  130 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-~  130 (268)
                      .+.++.+|||||||+|.+++.+|...+..+|+|||+|+.++..++  ++++    ..+.  .+++++++|+.++++.. .
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~--~~v~~~~~d~~~~~~~~~~  138 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE--KLSE----ALQL--ENTTFCHDRAETFGQRKDV  138 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHH----HHTC--SSEEEEESCHHHHTTCTTT
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HcCC--CCEEEEeccHHHhcccccc
Confidence            446788999999999999999987655556999999998555544  3332    2343  37999999998876531 1


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|++..+   .+....+.++.++|||||++++.
T Consensus       139 ~~~fD~V~~~~~---~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          139 RESYDIVTARAV---ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             TTCEEEEEEECC---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCccEEEEecc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence            124688888653   67888999999999999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.57  E-value=2.2e-14  Score=121.73  Aligned_cols=117  Identities=14%  Similarity=0.231  Sum_probs=84.8

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .....+...+...++.+|||||||+|..++.+|+..+..+|+|+|+|+.++..++  ++++    ..+. ..+++++++|
T Consensus        58 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~~d  130 (232)
T 3ntv_A           58 LTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK--QNLA----TYHF-ENQVRIIEGN  130 (232)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH--HHHH----HTTC-TTTEEEEESC
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEECC
Confidence            3334444445566888999999999999999988655556999999997555443  3333    3343 2489999999


Q ss_pred             CCCC-c-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        122 FLTE-E-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       122 ~~~l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +.+. + ..+  ..+|+|+++..  .......+.++.+.|||||++++.+
T Consensus       131 ~~~~~~~~~~--~~fD~V~~~~~--~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          131 ALEQFENVND--KVYDMIFIDAA--KAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             GGGCHHHHTT--SCEEEEEEETT--SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHHHHhhcc--CCccEEEEcCc--HHHHHHHHHHHHHhcCCCeEEEEee
Confidence            9874 3 222  34678887643  4567788999999999999999853

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.57  E-value=2.1e-14  Score=118.47  Aligned_cols=104  Identities=10%  Similarity=0.106  Sum_probs=78.5

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhC--CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATG--CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~--~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +..+++.++ ++++.+|||||||+|.++..+++..+  ..+|+|+|+|+.+                   ...+++++++
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------------------~~~~v~~~~~   70 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------------------PIPNVYFIQG   70 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------------------CCTTCEEEEC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------------------CCCCceEEEc
Confidence            445666665 57889999999999999999998876  4569999999830                   1247899999


Q ss_pred             CCCCCc-------------------------ccccccceEEEEEeccccC-----cCHH-------HHHHHHHhcCCCCc
Q psy17227        121 DFLTEE-------------------------HREKITQASIVFVNNFAFG-----PTVD-------HALKERFQDLKDGA  163 (268)
Q Consensus       121 D~~~l~-------------------------~~~~~~d~dvv~~~~~~~~-----~~~~-------~~l~e~~r~LkpGG  163 (268)
                      |+.+.+                         +++  ..+|+|+++...++     .+..       ..+.+++++|||||
T Consensus        71 d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG  148 (201)
T 2plw_A           71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQD--KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGG  148 (201)
T ss_dssp             CTTTTSSCCC-----------CHHHHHHHHHHTT--CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             cccchhhhhhccccccccccchhhHHHHHhhcCC--CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCC
Confidence            998876                         332  24688888765443     2222       36788999999999


Q ss_pred             EEEEe
Q psy17227        164 RIVSS  168 (268)
Q Consensus       164 ~~i~~  168 (268)
                      +|++.
T Consensus       149 ~lv~~  153 (201)
T 2plw_A          149 TYIVK  153 (201)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=1.4e-14  Score=130.63  Aligned_cols=106  Identities=22%  Similarity=0.288  Sum_probs=80.9

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      ..+.++.+|||||||+|.++..+++. |..+|+|+|+|+ ++..|+  ++++    ..+. ..+++++++|+.++++++.
T Consensus        62 ~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~~  132 (349)
T 3q7e_A           62 RHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAV--KIVK----ANKL-DHVVTIIKGKVEEVELPVE  132 (349)
T ss_dssp             HHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHH--HHHH----HTTC-TTTEEEEESCTTTCCCSSS
T ss_pred             cccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHH--HHHH----HcCC-CCcEEEEECcHHHccCCCC
Confidence            34568899999999999999988876 776799999995 555543  3332    2343 2469999999999987654


Q ss_pred             ccceEEEEEecc----ccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        131 ITQASIVFVNNF----AFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       131 ~~d~dvv~~~~~----~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                        .+|+|+++..    .+...+...+.++.|+|||||+++.
T Consensus       133 --~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          133 --KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             --CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             --ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence              4677887543    3446788889999999999999974

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.57  E-value=9.5e-15  Score=124.76  Aligned_cols=112  Identities=15%  Similarity=0.243  Sum_probs=82.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++..+...++.+|||||||+|.++..+++. +.. |+|+|+|+.++..++  +++.    ..+   .+++++++|+
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~-v~gvD~s~~~l~~a~--~~~~----~~~---~~v~~~~~d~   97 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYE-VVGLDLHEEMLRVAR--RKAK----ERN---LKIEFLQGDV   97 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HTT---CCCEEEESCG
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HHHH----hcC---CceEEEECCh
Confidence            3455667766778899999999999999998875 665 999999997555543  3332    122   3799999999


Q ss_pred             CCCcccccccceEEEEEe-c-ccc-C-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVN-N-FAF-G-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~-~-~~~-~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++++ .  .+|+|++. + ..+ . ++....++++.++|||||++++.
T Consensus        98 ~~~~~~-~--~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A           98 LEIAFK-N--EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             GGCCCC-S--CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccC-C--CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            988764 2  45777753 2 222 2 35678899999999999999874

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.56  E-value=9.4e-15  Score=125.73  Aligned_cols=105  Identities=13%  Similarity=0.017  Sum_probs=81.1

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-cc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-KI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-~~  131 (268)
                      ..++.+|||||||+|.+++.+|...+..+|+|||+|+.++..++  ++++    ..+.  .+++++++|+++++..+ ..
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~l--~~v~~~~~d~~~~~~~~~~~  149 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVE--RAIE----VLGL--KGARALWGRAEVLAREAGHR  149 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHH----HHTC--SSEEEEECCHHHHTTSTTTT
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HhCC--CceEEEECcHHHhhcccccC
Confidence            46788999999999999999998877667999999998555544  3333    2343  36999999998876421 11


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|++.++   .++...+..+.++|||||++++.
T Consensus       150 ~~fD~I~s~a~---~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          150 EAYARAVARAV---APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             TCEEEEEEESS---CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCceEEEECCc---CCHHHHHHHHHHHcCCCeEEEEE
Confidence            35788888765   45678889999999999999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.56  E-value=9.5e-15  Score=123.43  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .++.... .++.+|||||||+|.++..+++..+  +++|+|+|+.++..++  ++           ..+++++++|+.++
T Consensus        32 ~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~--~~-----------~~~~~~~~~d~~~~   95 (239)
T 3bxo_A           32 DLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHAR--KR-----------LPDATLHQGDMRDF   95 (239)
T ss_dssp             HHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHH--HH-----------CTTCEEEECCTTTC
T ss_pred             HHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHH--Hh-----------CCCCEEEECCHHHc
Confidence            3444332 6788999999999999999988754  4999999997544433  11           24799999999998


Q ss_pred             cccccccceEEEEE-e-ccccC---cCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        126 EHREKITQASIVFV-N-NFAFG---PTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       126 ~~~~~~~d~dvv~~-~-~~~~~---~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      ++ +.  .+|+|++ . .+.|.   .+....++++.++|||||++++..+..
T Consensus        96 ~~-~~--~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           96 RL-GR--KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             CC-SS--CEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             cc-CC--CCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            76 33  4677774 4 33455   446778999999999999999974433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.56  E-value=8.5e-15  Score=126.27  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             HHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...+.+. ++.+|||+|||+|.++..+|+..+. +|+|+|+++.++..++  +++.    ..+. ..+++++++|+.++
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~--~n~~----~~~~-~~~v~~~~~D~~~~  111 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAK--RSVA----YNQL-EDQIEIIEYDLKKI  111 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHH--HHHH----HTTC-TTTEEEECSCGGGG
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHH--HHHH----HCCC-cccEEEEECcHHHh
Confidence            44556788 8999999999999999998887554 5999999997555543  3333    2333 24799999999987


Q ss_pred             cccccccceEEEEEeccccCc---------------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGP---------------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~---------------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.......+|+|++|..++..                     +....+..+.++|||||++++.
T Consensus       112 ~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             GGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            631112357889987654332                     2356788999999999999975

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.56  E-value=1.1e-14  Score=128.93  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-----ccccEEEEEcCCCCCc--
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-----RHGEFRLVKGDFLTEE--  126 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-----~~~~i~~~~gD~~~l~--  126 (268)
                      .++.+|||||||+|.++..+++. +...++|+|+|+.++..++  +++..    .+.     ...+++++++|+.+++  
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~--~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~  105 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQ--QRYED----MKNRRDSEYIFSAEFITADSSKELLI  105 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHH--HHHHH----HHSSSCC-CCCEEEEEECCTTTSCST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHH--HHHHH----hhhcccccccceEEEEEecccccchh
Confidence            47889999999999999988874 4446999999997555443  33321    110     1237999999999986  


Q ss_pred             --ccccccceEEEEEeccccC-----cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HREKITQASIVFVNNFAFG-----PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~~~~d~dvv~~~~~~~~-----~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +++....+|+|+++..+|+     ++....+.++.++|||||.++++
T Consensus       106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (313)
T 3bgv_A          106 DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT  154 (313)
T ss_dssp             TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence              4332235788888766544     23568899999999999999986

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.56  E-value=7.7e-15  Score=121.79  Aligned_cols=112  Identities=17%  Similarity=0.200  Sum_probs=81.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++... +.++.+|||||||+|.++..+++. +..+++|+|+|+.++..++  +++.        ...+++++++|+
T Consensus        31 ~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~--~~~~--------~~~~i~~~~~d~   98 (215)
T 2pxx_A           31 SFRALLEPE-LRPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQ--ACYA--------HVPQLRWETMDV   98 (215)
T ss_dssp             HHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHH--HHTT--------TCTTCEEEECCT
T ss_pred             HHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHH--Hhcc--------cCCCcEEEEcch
Confidence            345555443 478889999999999999998876 4425999999987444433  2211        125899999999


Q ss_pred             CCCcccccccceEEEEEecccc----------------CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAF----------------GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~----------------~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++++++.  .+|+|+++..++                ..+....+.++.++|||||++++.
T Consensus        99 ~~~~~~~~--~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  158 (215)
T 2pxx_A           99 RKLDFPSA--SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM  158 (215)
T ss_dssp             TSCCSCSS--CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCCCCC--cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence            99887654  467777765431                234577899999999999999986

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.56  E-value=5.7e-14  Score=127.32  Aligned_cols=118  Identities=17%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+++.++.+|||||||+|.++..+++.++..+++++|+ +.++..++  +++.    ..+. ..+++|+.+|+. 
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~----~~~l-~~~v~~~~~d~~-  262 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEAR--ELLT----GRGL-ADRCEILPGDFF-  262 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH--HHHH----HTTC-TTTEEEEECCTT-
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHH--Hhhh----hcCc-CCceEEeccCCC-
Confidence            4567777888899999999999999999999887667999999 76444433  3332    2333 258999999998 


Q ss_pred             CcccccccceEEEEEeccc-cCcCHH--HHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        125 EEHREKITQASIVFVNNFA-FGPTVD--HALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~-~~~~~~--~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      .+++.   .+|+|++.+++ ++++..  ..+++++++|||||++++.+...+.
T Consensus       263 ~~~p~---~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          263 ETIPD---GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             TCCCS---SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             CCCCC---CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            44443   35677776664 455543  6899999999999999988655443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.55  E-value=1.8e-14  Score=128.51  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +++.+++.++.+|||||||+|..+..+++.++..+++++|+ +.++..++  +++.    ..+. ..+++|+.+|+. .+
T Consensus       161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~-~~  231 (332)
T 3i53_A          161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAH--RRFL----DTGL-SGRAQVVVGSFF-DP  231 (332)
T ss_dssp             GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH--HHHH----HTTC-TTTEEEEECCTT-SC
T ss_pred             HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHH--Hhhh----hcCc-CcCeEEecCCCC-CC
Confidence            44455667788999999999999999999887767999999 76444333  3332    2333 258999999997 34


Q ss_pred             ccccccceEEEEEeccc-cCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        127 HREKITQASIVFVNNFA-FGPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~-~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      ++.   .+|+|++.+++ ++++  ....+++++++|||||++++.+...+.
T Consensus       232 ~p~---~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          232 LPA---GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             CCC---SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             CCC---CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            433   45677776664 5665  377899999999999999998665543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.55  E-value=1e-14  Score=122.11  Aligned_cols=104  Identities=18%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-  124 (268)
                      .+++.+. .++.+|||||||+|.++..+++. +. +++|+|+|+.++..++      +         ...+++++|+.+ 
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~-~~~~~D~~~~~~~~~~------~---------~~~~~~~~d~~~~   85 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GT-RVSGIEAFPEAAEQAK------E---------KLDHVVLGDIETM   85 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TC-EEEEEESSHHHHHHHH------T---------TSSEEEESCTTTC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CC-eEEEEeCCHHHHHHHH------H---------hCCcEEEcchhhc
Confidence            4555655 78899999999999999998876 64 5999999986433332      1         124789999987 


Q ss_pred             -CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 -EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 -l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                       .+++++  .+|+|+++.. .|.+++...+.++.++|||||.+++..
T Consensus        86 ~~~~~~~--~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           86 DMPYEEE--QFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             CCCSCTT--CEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             CCCCCCC--ccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence             455444  4567776655 577889999999999999999999863

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.55  E-value=6.9e-15  Score=122.38  Aligned_cols=120  Identities=16%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             cCcHHHHHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         38 ETSFDLISRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ++.......+++.+... ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.++..++  ++++    ..+.  .+++
T Consensus        36 p~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~--~~~~----~~~~--~~v~  106 (202)
T 2fpo_A           36 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLI--KNLA----TLKA--GNAR  106 (202)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHH--HHHH----HTTC--CSEE
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHH--HHHH----HcCC--CcEE
Confidence            34444455566655443 7889999999999999987765 5546999999998655544  3333    2332  4899


Q ss_pred             EEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227        117 LVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~  168 (268)
                      ++++|+.+ ++..+  ..+|+|+++..++.......+..+.+  +|||||++++.
T Consensus       107 ~~~~D~~~~~~~~~--~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~  159 (202)
T 2fpo_A          107 VVNSNAMSFLAQKG--TPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  159 (202)
T ss_dssp             EECSCHHHHHSSCC--CCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EEECCHHHHHhhcC--CCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEE
Confidence            99999977 34322  24688988877666667778888864  69999999875

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.55  E-value=2.1e-14  Score=122.48  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH----hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAA----TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~----~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ...+...+...++.+|||||||+|..+..+|+.    .+..+|+|||+|+.++..++            +. ..++++++
T Consensus        70 ~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------------~~-~~~v~~~~  136 (236)
T 2bm8_A           70 QAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------------SD-MENITLHQ  136 (236)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------------GG-CTTEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------------cc-CCceEEEE
Confidence            333444444456789999999999999999886    34456999999998655543            11 25899999


Q ss_pred             cCCCCC---cccccccceEEEEEeccccCcCHHHHHHHHHh-cCCCCcEEEEeC
Q psy17227        120 GDFLTE---EHREKITQASIVFVNNFAFGPTVDHALKERFQ-DLKDGARIVSSK  169 (268)
Q Consensus       120 gD~~~l---~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r-~LkpGG~~i~~~  169 (268)
                      +|+.++   +..+. ..+|+|+++.. | .+....+.++.| +|||||++++.+
T Consensus       137 gD~~~~~~l~~~~~-~~fD~I~~d~~-~-~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          137 GDCSDLTTFEHLRE-MAHPLIFIDNA-H-ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CCSSCSGGGGGGSS-SCSSEEEEESS-C-SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CcchhHHHHHhhcc-CCCCEEEECCc-h-HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999985   54332 13567777665 4 377888999997 999999999963

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.55  E-value=4.3e-14  Score=119.14  Aligned_cols=112  Identities=17%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             HHHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++....++++.+||||||| +|.++..+++..+. +|+|+|+|+.++..++  ++++    ..+.   +++++++|+.
T Consensus        45 ~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~--~~~~----~~~~---~v~~~~~d~~  114 (230)
T 3evz_A           45 RYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYAR--RNIE----RNNS---NVRLVKSNGG  114 (230)
T ss_dssp             HHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHH--HHHH----HTTC---CCEEEECSSC
T ss_pred             hhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHH--HHHH----HhCC---CcEEEeCCch
Confidence            334344457889999999999 99999999887644 4999999998555544  3333    2232   7999999975


Q ss_pred             CC-cccccccceEEEEEeccccCcC--------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TE-EHREKITQASIVFVNNFAFGPT--------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l-~~~~~~~d~dvv~~~~~~~~~~--------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ ++++  ..+|+|+++..++...                    ....+.++.++|||||++++.
T Consensus       115 ~~~~~~~--~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          115 IIKGVVE--GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             SSTTTCC--SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhccc--CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            43 2333  3578888886644322                    366789999999999999975

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.55  E-value=6.8e-15  Score=130.10  Aligned_cols=105  Identities=5%  Similarity=0.001  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc----cccEEEEEcCCC------C
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR----HGEFRLVKGDFL------T  124 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~i~~~~gD~~------~  124 (268)
                      ++.+|||||||+|..+..+++. +...|+|||+|+.|+..|+  +++..    .+..    .-+++|.++|+.      +
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~--~~~~~----~~~~~~~~~~~~~f~~~d~~~d~~~~~  120 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGN--ERYNK----LNSGIKTKYYKFDYIQETIRSDTFVSS  120 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHH--HHHHH----HCC----CCCEEEEEECCTTSSSHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHH--HHHHh----ccccccccccccchhhhhcccchhhhh
Confidence            5789999999999877666654 3345999999998666654  33321    1211    013778899883      2


Q ss_pred             Cc--ccccccceEEEEEecccc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HREKITQASIVFVNNFAF----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~~~~d~dvv~~~~~~~----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++  ++++  .+|+|++...+|    ..+....+++++++|||||+|+++
T Consensus       121 l~~~~~~~--~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~  168 (302)
T 2vdw_A          121 VREVFYFG--KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT  168 (302)
T ss_dssp             HHTTCCSS--CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccccCC--CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            22  2233  467777654433    246778899999999999999976

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.55  E-value=2.8e-14  Score=124.42  Aligned_cols=117  Identities=12%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             HHHHHHHHcC-CCCCCEEEEEcCCC---CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQIN-ATPDDVFVDLGSGV---GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~-~~~~~~vLDiGCG~---G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .+.+++..+. .....+|||||||+   |.++..+++..+..+|+|+|+|+.|+..++  +++.        ...+++++
T Consensus        64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar--~~~~--------~~~~v~~~  133 (274)
T 2qe6_A           64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGR--ALLA--------KDPNTAVF  133 (274)
T ss_dssp             HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHH--HHHT--------TCTTEEEE
T ss_pred             HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHH--HhcC--------CCCCeEEE
Confidence            3445555554 33457999999999   998876666555556999999997555544  2221        13589999


Q ss_pred             EcCCCCCccc-------c--cccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeC
Q psy17227        119 KGDFLTEEHR-------E--KITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       119 ~gD~~~l~~~-------~--~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++|+.+.+..       +  +...+|+|+++.+ +|.++  ....+++++++|||||+|++++
T Consensus       134 ~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          134 TADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             ECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            9999875310       0  1113567777665 45555  8889999999999999999873

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.55  E-value=2.9e-14  Score=120.17  Aligned_cols=115  Identities=16%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             HHHHHH---HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         42 DLISRM---IDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        42 ~~~~~l---l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .....+   ++.+++.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.++..  ++++++        ...++++
T Consensus        57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~--~~~~~~--------~~~~v~~  126 (227)
T 1g8a_A           57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE--LVPIVE--------ERRNIVP  126 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH--HHHHHS--------SCTTEEE
T ss_pred             hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHH--HHHHHh--------ccCCCEE
Confidence            334555   3445588999999999999999999998864 3469999999874333  323322        1258999


Q ss_pred             EEcCCCCCccc-ccccceEEEEEeccccCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHR-EKITQASIVFVNNFAFGPTVDHA-LKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~-~~~~d~dvv~~~~~~~~~~~~~~-l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+.+.. .....+|+|+++..  .++.... +.+++++|||||++++.
T Consensus       127 ~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          127 ILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999884311 11124788887644  3444444 89999999999999986

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.55  E-value=5.8e-15  Score=118.28  Aligned_cols=121  Identities=17%  Similarity=0.145  Sum_probs=85.1

Q ss_pred             cccCcHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         36 YGETSFDLISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        36 ~g~~~~~~~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      +.+........+++.+.  +.++.+|||+|||+|.++..+++. +.. |+|+|+|+.++..++  ++++.    .+.   
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~-v~~vD~~~~~~~~a~--~~~~~----~~~---   88 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GWE-AVLVEKDPEAVRLLK--ENVRR----TGL---   88 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TCE-EEEECCCHHHHHHHH--HHHHH----HTC---
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CCe-EEEEeCCHHHHHHHH--HHHHH----cCC---
Confidence            44455555556666654  337889999999999999998875 555 999999997555544  33332    222   


Q ss_pred             cEEEEEcCCCCC-cc-cccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTE-EH-REKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l-~~-~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      +++++++|+.+. +. ......+|+|+++..++ ......+..+.  ++|||||++++.
T Consensus        89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~~  146 (171)
T 1ws6_A           89 GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEEE
Confidence            799999999873 32 11112478899887655 55666666666  999999999975

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.55  E-value=3.5e-14  Score=128.44  Aligned_cols=110  Identities=10%  Similarity=0.027  Sum_probs=80.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC--cccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE--EHREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l--~~~~~~  131 (268)
                      .+..+|||||||+|..+..+++.++..+++|+|+ +.++..+  ++++.    ..+. ..+++|+.+|+.+.  |++ . 
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a--~~~~~----~~~~-~~~v~~~~~d~~~~~~~~p-~-  247 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMM--RKQTA----GLSG-SERIHGHGANLLDRDVPFP-T-  247 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHH--HHHHT----TCTT-GGGEEEEECCCCSSSCCCC-C-
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHH--HHHHH----hcCc-ccceEEEEccccccCCCCC-C-
Confidence            4668999999999999999999887767999999 7643333  23322    2232 24899999999985  454 2 


Q ss_pred             cceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        132 TQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       132 ~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                       .+|+|++..++| +++  ....+++++++|||||++++.+.+.+.
T Consensus       248 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          248 -GFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             -CCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             -CcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence             356777766654 444  356799999999999999988665543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=1.9e-14  Score=121.68  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=85.5

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..+..++...+.+++.+|||||||+|..++.+|+..+ ..+|+|||+|+.++..++  ++++    ..|....+++++++
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK--ALFR----EAGYSPSRVRFLLS  116 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH--HHHH----HTTCCGGGEEEECS
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCCcCcEEEEEc
Confidence            3445555555656667999999999999999998764 446999999997555443  4333    34543258999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      |+.+.........+|+|++...  ..+....+.++++.|||||++++.+
T Consensus       117 da~~~l~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          117 RPLDVMSRLANDSYQLVFGQVS--PMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             CHHHHHHHhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            9876421110135788888643  3456778999999999999999963

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.55  E-value=9.1e-14  Score=123.91  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+++.+ .+|||||||+|..+..+++.++..+++|+|+ +.++..++  +++.    ..+. ..+++++++|+.
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~  227 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVAR--DNLS----SLLA-GERVSLVGGDML  227 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHH--HHTH----HHHH-TTSEEEEESCTT
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHH--HHHh----hcCC-CCcEEEecCCCC
Confidence            455777777777 8999999999999999998876667999999 88666654  3222    1222 247999999998


Q ss_pred             CCcccccccceEEEEEeccc-cCcCHH--HHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFA-FGPTVD--HALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~-~~~~~~--~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      + +++ .  .+|+|++..++ ++++..  ..+++++++|||||++++.+...+
T Consensus       228 ~-~~~-~--~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          228 Q-EVP-S--NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             T-CCC-S--SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             C-CCC-C--CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            7 544 2  35677777665 455544  789999999999999998855543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.55  E-value=2.7e-14  Score=128.30  Aligned_cols=117  Identities=12%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             HHHHHcCCCC-CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATP-DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~-~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+++.+++.+ +.+|||||||+|.++..+++.++..+++++|+ +.++..++  +++.    ..+. ..+++++.+|+.+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~  240 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAAR--KTIH----AHDL-GGRVEFFEKNLLD  240 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH--HHHH----HTTC-GGGEEEEECCTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHH--HHHH----hcCC-CCceEEEeCCccc
Confidence            5677777777 89999999999999999999887767999999 65444433  3332    2333 2479999999998


Q ss_pred             Cc--ccccccceEEEEEeccc-cCcC--HHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        125 EE--HREKITQASIVFVNNFA-FGPT--VDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       125 l~--~~~~~~d~dvv~~~~~~-~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      .+  .+.   .+|+|++..++ ++++  ....++++.++|||||++++.+...+
T Consensus       241 ~~~~~~~---~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (352)
T 3mcz_A          241 ARNFEGG---AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN  291 (352)
T ss_dssp             GGGGTTC---CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred             CcccCCC---CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            76  332   36788877665 4554  37789999999999999998765544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=7e-15  Score=126.67  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..++..+- .++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++  ++        . . .+  ++++|+.
T Consensus        44 ~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~~~l~~a~--~~--------~-~-~~--~~~~d~~  106 (260)
T 2avn_A           44 IGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFE-VVLVDPSKEMLEVAR--EK--------G-V-KN--VVEAKAE  106 (260)
T ss_dssp             HHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCE-EEEEESCHHHHHHHH--HH--------T-C-SC--EEECCTT
T ss_pred             HHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHc-CCe-EEEEeCCHHHHHHHH--hh--------c-C-CC--EEECcHH
Confidence            344444432 37889999999999999988875 554 999999997544443  11        1 1 12  8999999


Q ss_pred             CCcccccccceEEEEEec-ccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNN-FAF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~-~~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|++++.  +|+|++.. +.| .+++...++++.++|||||++++.
T Consensus       107 ~~~~~~~~--fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  151 (260)
T 2avn_A          107 DLPFPSGA--FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  151 (260)
T ss_dssp             SCCSCTTC--EEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HCCCCCCC--EEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEE
Confidence            98876554  56677654 444 477899999999999999999975

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.54  E-value=3.6e-14  Score=126.08  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +.....+++.++++++++|||||||+|.++..+++..+. .+|+|+|+|+.++..++  ++++    ..+.  .++++++
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~g~--~~v~~~~  132 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK--RNVE----RLGI--ENVIFVC  132 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHH----HTTC--CSEEEEE
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CCeEEEE
Confidence            456778889999999999999999999999999987663 46999999997554443  3332    2333  3699999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.+.+..+.  .+|+|++...++.-.     .++.+.|||||++++.
T Consensus       133 ~d~~~~~~~~~--~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          133 GDGYYGVPEFS--PYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             SCGGGCCGGGC--CEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEE
T ss_pred             CChhhccccCC--CeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEEE
Confidence            99988554333  467788776543222     5778899999999986

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.54  E-value=3.8e-14  Score=128.95  Aligned_cols=110  Identities=16%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +...+.+.++.+|||||||+|.+++.+++. |..+|+|||+| .++..++  ++++    ..+. ..+++++++|+.+++
T Consensus        55 i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~  125 (376)
T 3r0q_C           55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHAR--ALVK----ANNL-DHIVEVIEGSVEDIS  125 (376)
T ss_dssp             HHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHH--HHHH----HTTC-TTTEEEEESCGGGCC
T ss_pred             HHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHH--HHHH----HcCC-CCeEEEEECchhhcC
Confidence            444556788999999999999999988875 66569999999 7655544  3332    3343 246999999999988


Q ss_pred             ccccccceEEEEEecccc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAF----GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~----~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++   ..+|+|+++.+.+    ...+...+.++.+.|||||+++..
T Consensus       126 ~~---~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          126 LP---EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             CS---SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             cC---CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            65   3578888865422    245777889999999999999864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.54  E-value=3.8e-14  Score=121.32  Aligned_cols=116  Identities=20%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFR  116 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~  116 (268)
                      ..+.....++..+++.++.+|||+|||+|.++..+++..+ ..+++|+|+|+.++..++  ++++    .. |  ..+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~--~~~~----~~~g--~~~v~  151 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAE--RNVR----AFWQ--VENVR  151 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHH----HHCC--CCCEE
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HhcC--CCCEE
Confidence            4455667788889999999999999999999999998753 456999999997544443  3333    22 3  35899


Q ss_pred             EEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++|+.+.++++.  .+|+|+++    .++....+.++.++|||||++++.
T Consensus       152 ~~~~d~~~~~~~~~--~~D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~~  197 (258)
T 2pwy_A          152 FHLGKLEEAELEEA--AYDGVALD----LMEPWKVLEKAALALKPDRFLVAY  197 (258)
T ss_dssp             EEESCGGGCCCCTT--CEEEEEEE----SSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEECchhhcCCCCC--CcCEEEEC----CcCHHHHHHHHHHhCCCCCEEEEE
Confidence            99999998766543  46778763    466778899999999999999986

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.54  E-value=2e-14  Score=130.63  Aligned_cols=111  Identities=15%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCC------CCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSG------VGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG------~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      .....+++..+. .++.+|||||||      +|+.++.+++.+ +..+|+|||+|+.|.   .              ...
T Consensus       203 ~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~--------------~~~  264 (419)
T 3sso_A          203 TPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V--------------DEL  264 (419)
T ss_dssp             HHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G--------------CBT
T ss_pred             HHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h--------------cCC
Confidence            455667777765 345799999999      777777777764 555699999999741   0              135


Q ss_pred             cEEEEEcCCCCCccc------ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        114 EFRLVKGDFLTEEHR------EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       114 ~i~~~~gD~~~l~~~------~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +++|+++|+.++|+.      ++  .+|+|+++..+++.+....|++++++|||||+|++.+..
T Consensus       265 rI~fv~GDa~dlpf~~~l~~~d~--sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          265 RIRTIQGDQNDAEFLDRIARRYG--PFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHC--CEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CcEEEEecccccchhhhhhcccC--CccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            899999999999876      33  467888887766678889999999999999999997543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=2e-14  Score=123.28  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~  129 (268)
                      .+.++.+|||||||+|..+..+|+..+ ..+|+|+|+|+.++..++  ++++    ..+.. .+++++++|+.+ ++...
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~g~~-~~v~~~~~d~~~~l~~~~  132 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR--ENLQ----LAGVD-QRVTLREGPALQSLESLG  132 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH--HHHH----HTTCT-TTEEEEESCHHHHHHTCC
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CcEEEEEcCHHHHHHhcC
Confidence            556789999999999999999998765 456999999997544443  3333    34432 489999999976 34222


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ....+|+|++..  ..++....+.++.+.|||||++++.+.+
T Consensus       133 ~~~~fD~V~~d~--~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          133 ECPAFDLIFIDA--DKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             SCCCCSEEEECS--CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             CCCCeEEEEECC--chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            212467788764  3445677899999999999999986443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.54  E-value=6.3e-15  Score=127.61  Aligned_cols=110  Identities=11%  Similarity=0.028  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+..+++.+++.++.+|||||||+|.+++.+|+. +.. |+|||+|+.|+..++  +++.         . +  ++++|
T Consensus        32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~-V~gvD~S~~ml~~Ar--~~~~---------~-~--~v~~~   95 (261)
T 3iv6_A           32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GAS-VTVFDFSQRMCDDLA--EALA---------D-R--CVTID   95 (261)
T ss_dssp             CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHTS---------S-S--CCEEE
T ss_pred             HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCE-EEEEECCHHHHHHHH--HHHH---------h-c--cceee
Confidence            34567888899999999999999999999999875 554 999999998555543  2211         1 1  34445


Q ss_pred             CCCCcc---cccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEH---REKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~---~~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+++.   .+....+|+|+++..+ |.  ++....+.++.++| |||+++++
T Consensus        96 ~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A           96 LLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             ECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             eeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            544433   1111245677777654 33  34667899999999 99999976

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.54  E-value=3.9e-14  Score=121.36  Aligned_cols=116  Identities=20%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      ..+.....++..+++.++.+|||+|||+|.++..+++.. +..+++|+|+|+.++..++  ++++    ..+. ..++++
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~--~~~~----~~~~-~~~v~~  149 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAW--ENIK----WAGF-DDRVTI  149 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH--HHHH----HHTC-TTTEEE
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHH--HHHH----HcCC-CCceEE
Confidence            445666788889999999999999999999999999884 3556999999997555443  3333    2343 235999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+. +++.  .+|+|++    +.++....+.++.++|||||++++.
T Consensus       150 ~~~d~~~~-~~~~--~~D~v~~----~~~~~~~~l~~~~~~L~~gG~l~~~  193 (255)
T 3mb5_A          150 KLKDIYEG-IEEE--NVDHVIL----DLPQPERVVEHAAKALKPGGFFVAY  193 (255)
T ss_dssp             ECSCGGGC-CCCC--SEEEEEE----CSSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EECchhhc-cCCC--CcCEEEE----CCCCHHHHHHHHHHHcCCCCEEEEE
Confidence            99999864 3333  4678886    3567778899999999999999976

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=1.7e-14  Score=117.65  Aligned_cols=105  Identities=24%  Similarity=0.334  Sum_probs=79.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .++..+ +.++.+|||||||+|.++..++.. +.. ++|+|+|+.++..++  ++           ..+++++++|+.++
T Consensus        38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~~D~~~~~~~~a~--~~-----------~~~~~~~~~d~~~~  101 (195)
T 3cgg_A           38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHD-VLGTDLDPILIDYAK--QD-----------FPEARWVVGDLSVD  101 (195)
T ss_dssp             HHHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HH-----------CTTSEEEECCTTTS
T ss_pred             HHHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCc-EEEEcCCHHHHHHHH--Hh-----------CCCCcEEEcccccC
Confidence            455555 678899999999999999998876 554 999999987444332  11           23689999999998


Q ss_pred             cccccccceEEEEEe-ccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVN-NFA-FG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~-~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++.  .+|+|+++ .++ |.  ++....+.++.++|||||++++.
T Consensus       102 ~~~~~--~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~  146 (195)
T 3cgg_A          102 QISET--DFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG  146 (195)
T ss_dssp             CCCCC--CEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCC--ceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            76544  46778876 443 33  34577899999999999999985

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.53  E-value=2.8e-14  Score=118.32  Aligned_cols=114  Identities=16%  Similarity=0.188  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         40 SFDLISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        40 ~~~~~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .......+++.+.  +.++.+|||||||+|.++..+++ .+..+++|+|+|+.++..++  +++.    ..+.  .++++
T Consensus        43 ~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~--~~v~~  113 (205)
T 3grz_A           43 NHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAE--ENAA----LNGI--YDIAL  113 (205)
T ss_dssp             CHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHHH----HTTC--CCCEE
T ss_pred             CCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CceEE
Confidence            3444444554443  67889999999999999998876 56656999999997555443  3332    2332  24999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+.+  +  ..+|+|+++...+  .....++++.++|||||++++.
T Consensus       114 ~~~d~~~~~--~--~~fD~i~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A          114 QKTSLLADV--D--GKFDLIVANILAE--ILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             EESSTTTTC--C--SCEEEEEEESCHH--HHHHHGGGSGGGEEEEEEEEEE
T ss_pred             EeccccccC--C--CCceEEEECCcHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence            999998754  2  3567888875533  2466788889999999999985

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=1e-14  Score=123.57  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      ++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++  +++.    ..+   .+++++++|+.+++++ +  .+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-~~~-~~~~D~s~~~~~~a~--~~~~----~~~---~~~~~~~~d~~~~~~~-~--~f  102 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-FKN-TWAVDLSQEMLSEAE--NKFR----SQG---LKPRLACQDISNLNIN-R--KF  102 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-SSE-EEEECSCHHHHHHHH--HHHH----HTT---CCCEEECCCGGGCCCS-C--CE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-CCc-EEEEECCHHHHHHHH--HHHh----hcC---CCeEEEecccccCCcc-C--Cc
Confidence            7789999999999999988775 554 999999997555443  3322    112   2799999999988765 3  46


Q ss_pred             EEEEEec-c-ccC---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        135 SIVFVNN-F-AFG---PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       135 dvv~~~~-~-~~~---~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+|++.. . .|.   ++....++++.++|||||++++.
T Consensus       103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7777764 4 566   56788899999999999999974

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.53  E-value=3.6e-14  Score=128.37  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+++.++.+|||||||+|.++..+++.++..+++|+|+ +.++..++  +++.    ..+. ..+++|+++|+.+
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~  243 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR--RRFA----DAGL-ADRVTVAEGDFFK  243 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH--HHHH----HTTC-TTTEEEEECCTTS
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHH--HHHH----hcCC-CCceEEEeCCCCC
Confidence            4567777888899999999999999999999876556999999 76444433  3332    2333 2489999999976


Q ss_pred             CcccccccceEEEEEeccc-cCcCH--HHHHHHHHhcCCCCcEEEEeCC
Q psy17227        125 EEHREKITQASIVFVNNFA-FGPTV--DHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~-~~~~~--~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                       +++.   .+|+|++..++ ++++.  ...++++.++|||||++++.+.
T Consensus       244 -~~~~---~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          244 -PLPV---TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -CCSC---CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -cCCC---CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             3332   26788887765 45554  4789999999999999998765

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.53  E-value=2.9e-14  Score=129.32  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++..++ +.++.+|||||||+|..+..+++.++..+++++|+ +.++..++              ...+++|+.+|+.+
T Consensus       193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~~  257 (368)
T 3reo_A          193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP--------------AFSGVEHLGGDMFD  257 (368)
T ss_dssp             HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------CCTTEEEEECCTTT
T ss_pred             HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh--------------hcCCCEEEecCCCC
Confidence            4555665 77789999999999999999999887777999999 54222211              23589999999987


Q ss_pred             CcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        125 EEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                       |+++    .|+|++..++| +++  ....+++++++|||||++++.+...+.
T Consensus       258 -~~p~----~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          258 -GVPK----GDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             -CCCC----CSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             -CCCC----CCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence             6543    26777776654 444  346799999999999999998665543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.53  E-value=3.1e-14  Score=117.97  Aligned_cols=110  Identities=12%  Similarity=0.118  Sum_probs=81.7

Q ss_pred             HHHHHHcCCC---CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         45 SRMIDQINAT---PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        45 ~~ll~~l~~~---~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+++.+...   ++.+|||||||+|.++..++...+..+++|+|+|+.++..++  +++.    ..+.  .+++++++|
T Consensus        52 ~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~--~~v~~~~~d  123 (207)
T 1jsx_A           52 RHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR--QVQH----ELKL--ENIEPVQSR  123 (207)
T ss_dssp             HHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHH----HTTC--SSEEEEECC
T ss_pred             HHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HcCC--CCeEEEecc
Confidence            3444444322   478999999999999999998776667999999997554443  3332    2332  359999999


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+++. .  ..+|+|+++.+   .+....+.++.+.|||||++++.
T Consensus       124 ~~~~~~-~--~~~D~i~~~~~---~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          124 VEEFPS-E--PPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             TTTSCC-C--SCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             hhhCCc-c--CCcCEEEEecc---CCHHHHHHHHHHhcCCCcEEEEE
Confidence            998762 2  24678887644   56778899999999999999986

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.53  E-value=9.2e-14  Score=125.11  Aligned_cols=112  Identities=17%  Similarity=0.246  Sum_probs=84.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+.+.++.+|||||||+|.++..+++. |..+|+|+|+|+ +...+  +++++    ..+. ..+++++++|+.+
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a--~~~~~----~~~l-~~~v~~~~~d~~~  110 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHA--EVLVK----SNNL-TDRIVVIPGKVEE  110 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHH--HHHHH----HTTC-TTTEEEEESCTTT
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHH--HHHHH----HcCC-CCcEEEEEcchhh
Confidence            45677777789999999999999999988774 665699999996 44433  33332    2343 2589999999999


Q ss_pred             CcccccccceEEEEEecc-cc--CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNF-AF--GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~--~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++   .+|+|+++.. .|  .++....+.++.+.|||||+++..
T Consensus       111 ~~~~~---~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          111 VSLPE---QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCSS---CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCCCC---ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            87642   4688888754 33  345678888999999999999853

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.53  E-value=3.1e-14  Score=138.63  Aligned_cols=122  Identities=12%  Similarity=0.091  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..+..+++.+...++.+|||||||+|.+++.+++..+ ..+|+|||+|+.|+..|+  +++............+++|+++
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AR--eRLa~~lnAkr~gl~nVefiqG  785 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAA--KMLHVKLNKEACNVKSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHH--HHHHHHTTTTCSSCSEEEEEES
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHH--HHhhhccchhhcCCCceEEEEC
Confidence            3455567777667899999999999999999887653 245999999998665554  3222110000012348999999


Q ss_pred             CCCCCcccccccceEEEEEec-cccCcCHH--HHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNN-FAFGPTVD--HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~-~~~~~~~~--~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.++++.+..|  |+|++.. +.|.++..  ..+.+++++|||| .++++
T Consensus       786 Da~dLp~~d~sF--DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIS  833 (950)
T 3htx_A          786 SILEFDSRLHDV--DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVS  833 (950)
T ss_dssp             CTTSCCTTSCSC--CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             chHhCCcccCCe--eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEE
Confidence            999999876655  4565554 45666544  5789999999999 66654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=1.3e-13  Score=111.30  Aligned_cols=112  Identities=18%  Similarity=0.313  Sum_probs=85.7

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ........+++.+++.++.+|||+|||+|.++..+++  +..+++|+|+|+.++..++  ++++    ..+.  .+++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~--~~~~----~~~~--~~~~~~   88 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTK--QNLA----KFNI--KNCQII   88 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHH--HHHH----HTTC--CSEEEE
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHH--HHHH----HcCC--CcEEEE
Confidence            4455667788888889999999999999999998887  4445999999997554443  3332    2332  479999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+ ++++.  .+|+|+++..   .+....+.++.+.  |||++++.
T Consensus        89 ~~d~~~-~~~~~--~~D~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~  130 (183)
T 2yxd_A           89 KGRAED-VLDKL--EFNKAFIGGT---KNIEKIIEILDKK--KINHIVAN  130 (183)
T ss_dssp             ESCHHH-HGGGC--CCSEEEECSC---SCHHHHHHHHHHT--TCCEEEEE
T ss_pred             ECCccc-cccCC--CCcEEEECCc---ccHHHHHHHHhhC--CCCEEEEE
Confidence            999987 65543  4567887655   6778888898888  99999986

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.53  E-value=9.8e-15  Score=123.24  Aligned_cols=104  Identities=8%  Similarity=-0.036  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..++..+ +.++.+|||||||+|.++..+++. +. +|+|+|+|+.++..++      +    .   ..+++++++
T Consensus        35 ~~l~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~------~----~---~~~~~~~~~   98 (226)
T 3m33_A           35 ELTFDLWLSRL-LTPQTRVLEAGCGHGPDAARFGPQ-AA-RWAAYDFSPELLKLAR------A----N---APHADVYEW   98 (226)
T ss_dssp             THHHHHHHHHH-CCTTCEEEEESCTTSHHHHHHGGG-SS-EEEEEESCHHHHHHHH------H----H---CTTSEEEEC
T ss_pred             HHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHc-CC-EEEEEECCHHHHHHHH------H----h---CCCceEEEc
Confidence            34445555443 367899999999999999998876 55 4999999997444433      1    1   247999999


Q ss_pred             CC-CCCccc-ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        121 DF-LTEEHR-EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       121 D~-~~l~~~-~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      |+ ..+|++ +.  .+|+|+++     .++...++++.++|||||+++.
T Consensus        99 d~~~~~~~~~~~--~fD~v~~~-----~~~~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A           99 NGKGELPAGLGA--PFGLIVSR-----RGPTSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             CSCSSCCTTCCC--CEEEEEEE-----SCCSGGGGGHHHHEEEEEEEEE
T ss_pred             chhhccCCcCCC--CEEEEEeC-----CCHHHHHHHHHHHcCCCcEEEE
Confidence            99 467765 44  46778776     4677889999999999999993

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.52  E-value=2.3e-14  Score=128.90  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.+++.++.+|||||||+|..+..+++.++..+++++|+++.   +.+  ++    ....+. ..+++|+++|+. .
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~---~~~--~~----~~~~~~-~~~v~~~~~d~~-~  243 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEV---VAR--HR----LDAPDV-AGRWKVVEGDFL-R  243 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHH---HTT--CC----CCCGGG-TTSEEEEECCTT-T
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHH---hhc--cc----ccccCC-CCCeEEEecCCC-C
Confidence            577788888999999999999999999999887767999999542   111  10    011122 247999999997 3


Q ss_pred             cccccccceEEEEEecc-ccCcCH--HHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        126 EHREKITQASIVFVNNF-AFGPTV--DHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~-~~~~~~--~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      +++    .+|+|++..+ +++++.  ...+++++++|||||++++.+...+.
T Consensus       244 ~~p----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          244 EVP----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             CCC----CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CCC----CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            333    3566766655 456665  68899999999999999988655443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.52  E-value=1e-13  Score=124.87  Aligned_cols=121  Identities=14%  Similarity=0.049  Sum_probs=90.4

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ++.+.....++..+++.++.+|||+|||+|.+++.+|... +...++|+|+|+.++..|+  ++++    ..|.  .+++
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~--~n~~----~~g~--~~i~  257 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR--EAAL----ASGL--SWIR  257 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH--HHHH----HTTC--TTCE
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH--HHHH----HcCC--CceE
Confidence            3445556678888899999999999999999999999877 3445999999998666554  4433    2343  2899


Q ss_pred             EEEcCCCCCcccccccceEEEEEeccccCc-----C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVNNFAFGP-----T----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~-----~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+++|+.+++.+...  +|+|++|..+...     +    ....+.++.++|||||++++.
T Consensus       258 ~~~~D~~~~~~~~~~--~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          258 FLRADARHLPRFFPE--VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             EEECCGGGGGGTCCC--CSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             EEeCChhhCccccCC--CCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999999998865443  4788887654321     1    145677888999999999875

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.52  E-value=1.1e-13  Score=112.41  Aligned_cols=118  Identities=21%  Similarity=0.322  Sum_probs=87.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      .........+++.+++.++.+|||+|||+|.++..+++..  .+++|+|+|+.++..++  +++.    ..+. ..++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~--~~~~----~~~~-~~~~~~   86 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTE--MNLQ----RHGL-GDNVTL   86 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHH--HHHH----HTTC-CTTEEE
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHH--HHHH----HcCC-CcceEE
Confidence            4555666678888899999999999999999999888754  45999999997544443  3332    2332 258999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|+.+ ++++ ...+|+|+++...  .+....+.++.++|||||++++.
T Consensus        87 ~~~d~~~-~~~~-~~~~D~v~~~~~~--~~~~~~l~~~~~~l~~gG~l~~~  133 (192)
T 1l3i_A           87 MEGDAPE-ALCK-IPDIDIAVVGGSG--GELQEILRIIKDKLKPGGRIIVT  133 (192)
T ss_dssp             EESCHHH-HHTT-SCCEEEEEESCCT--TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EecCHHH-hccc-CCCCCEEEECCch--HHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999876 3322 1256888876543  35688899999999999999986

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.52  E-value=3.4e-15  Score=137.22  Aligned_cols=112  Identities=21%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||||||+|.++..+++. +.. |+|+|+|+.++..++      +    .+.......|..++.
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~-v~gvD~s~~~~~~a~------~----~~~~~~~~~~~~~~~  162 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVR-HLGFEPSSGVAAKAR------E----KGIRVRTDFFEKATA  162 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCE-EEEECCCHHHHHHHH------T----TTCCEECSCCSHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCc-EEEECCCHHHHHHHH------H----cCCCcceeeechhhH
Confidence            3455778888889999999999999999998874 554 999999987444433      1    121111122334555


Q ss_pred             CCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++|++++.  +|+|++.. +.|.+++...+++++++|||||++++.
T Consensus       163 ~~l~~~~~~--fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          163 DDVRRTEGP--ANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             HHHHHHHCC--EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccCCCC--EEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            556665554  45666554 468899999999999999999999986

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=4.6e-14  Score=121.99  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHH---hccccccEEEEEcCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQW---YGKRHGEFRLVKGDFL  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~i~~~~gD~~  123 (268)
                      +...+...++.+|||||||+|.+++.++...+..+|+|||+++.++..++  +++.    .   .+. ..+++++++|+.
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~--~n~~----~~~~~~l-~~~v~~~~~D~~  100 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR--RSLE----LPDNAAF-SARIEVLEADVT  100 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHH--HHTT----SGGGTTT-GGGEEEEECCTT
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHHH----hhhhCCC-cceEEEEeCCHH
Confidence            44566778889999999999999999998876556999999997555544  2221    2   222 236999999999


Q ss_pred             CCc-------ccccccceEEEEEeccccCc-------------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE-------HREKITQASIVFVNNFAFGP-------------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~-------~~~~~~d~dvv~~~~~~~~~-------------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.       +++  ..+|+|++|..++..                   .....+..+.+.|||||+|++.
T Consensus       101 ~~~~~~~~~~~~~--~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          101 LRAKARVEAGLPD--EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             CCHHHHHHTTCCT--TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHhhhhhhhccCC--CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            872       222  247889988554432                   2567788999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.52  E-value=9.7e-14  Score=124.98  Aligned_cols=115  Identities=18%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+++.++.+|||||||+|.++..+++..+..+++++|+ +.++..++  +++.    ..+. ..+++|+++|+.+
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~  244 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR--SYLK----DEGL-SDRVDVVEGDFFE  244 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH--HHHH----HTTC-TTTEEEEECCTTS
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHH--HHHH----hcCC-CCceEEEeCCCCC
Confidence            3467777888899999999999999999998876556999999 77544443  3332    2333 2489999999976


Q ss_pred             CcccccccceEEEEEeccc-cCcCH--HHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        125 EEHREKITQASIVFVNNFA-FGPTV--DHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~-~~~~~--~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                       +++.   .+|+|++..++ ++++.  ...++++.++|||||++++.+..
T Consensus       245 -~~~~---~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          245 -PLPR---KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             -CCSS---CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CCCC---CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence             3332   36788877664 45554  47899999999999999987555

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=9.8e-14  Score=126.21  Aligned_cols=117  Identities=11%  Similarity=0.041  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD  121 (268)
                      ....+++.+...++.+|||+|||+|.+++.+++..+..+|+|+|+|+.++..++  +++.    ..+.. ..+++|+++|
T Consensus       210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar--~n~~----~ngl~~~~~v~~~~~D  283 (375)
T 4dcm_A          210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR--LNVE----TNMPEALDRCEFMINN  283 (375)
T ss_dssp             HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHH----HHCGGGGGGEEEEECS
T ss_pred             HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHH--HHHH----HcCCCcCceEEEEech
Confidence            345578888888889999999999999999999875566999999997555544  3333    22322 1369999999


Q ss_pred             CCCCcccccccceEEEEEeccccC-----cC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG-----PT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~-----~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+ ++++  ..+|+|+++..+|.     .. ....+.++.++|||||++++.
T Consensus       284 ~~~-~~~~--~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          284 ALS-GVEP--FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TTT-TCCT--TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhc-cCCC--CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            987 3333  25788998877653     11 235689999999999999975

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.51  E-value=6e-14  Score=121.80  Aligned_cols=119  Identities=16%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFR  116 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~  116 (268)
                      ..+.....++..+++.++.+|||+|||+|.++..+++..+ ..+++|+|+|+.++..++  +++.    .. |....+++
T Consensus        83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~g~~~~~v~  156 (280)
T 1i9g_A           83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR--RNVS----GCYGQPPDNWR  156 (280)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH--HHHH----HHHTSCCTTEE
T ss_pred             ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HhcCCCCCcEE
Confidence            4456677888899999999999999999999999998653 456999999997554443  3333    22 21124899


Q ss_pred             EEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ++++|+.+.++++.  .+|+|+++    .+++...+.++.++|||||++++..
T Consensus       157 ~~~~d~~~~~~~~~--~~D~v~~~----~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          157 LVVSDLADSELPDG--SVDRAVLD----MLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             EECSCGGGCCCCTT--CEEEEEEE----SSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECchHhcCCCCC--ceeEEEEC----CcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            99999998776543  46778774    3566788999999999999999863

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.51  E-value=3.3e-14  Score=123.66  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=80.3

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEEEEEcCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFRLVKGDF  122 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~gD~  122 (268)
                      ..++..+++.++.+|||+|||+|.++..+++. .+..+|+|+|+|+.++..++  ++++    .. |  ..+++++++|+
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~g--~~~v~~~~~d~  171 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM--DNLS----EFYD--IGNVRTSRSDI  171 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH--HHHH----TTSC--CTTEEEECSCT
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHHH----hcCC--CCcEEEEECch
Confidence            35677788999999999999999999999987 34456999999997444433  3332    22 3  24899999999


Q ss_pred             CCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ ++++.  .+|+|++    +.+++...+.++.++|||||++++.
T Consensus       172 ~~-~~~~~--~fD~Vi~----~~~~~~~~l~~~~~~LkpgG~l~i~  210 (275)
T 1yb2_A          172 AD-FISDQ--MYDAVIA----DIPDPWNHVQKIASMMKPGSVATFY  210 (275)
T ss_dssp             TT-CCCSC--CEEEEEE----CCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             hc-cCcCC--CccEEEE----cCcCHHHHHHHHHHHcCCCCEEEEE
Confidence            87 44333  4677876    4567788999999999999999986

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.51  E-value=5.8e-14  Score=127.15  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++..++ +.++.+|||||||+|..+..+++.++..+++++|+ +.++..++              ...+++|+.+|+.
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~  254 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP--------------QFPGVTHVGGDMF  254 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------CCTTEEEEECCTT
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh--------------hcCCeEEEeCCcC
Confidence            34666666 77889999999999999999999887777999999 54222111              2358999999998


Q ss_pred             CCcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      + |++..    |+|++..++| +++  ....+++++++|||||++++.+...+.
T Consensus       255 ~-~~p~~----D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          255 K-EVPSG----DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             T-CCCCC----SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             C-CCCCC----CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            8 66532    6777776654 543  457799999999999999998665543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.51  E-value=4.7e-14  Score=118.44  Aligned_cols=111  Identities=10%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HR  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~  128 (268)
                      ...++.+|||||||+|..+..+|+..+ ..+|+|+|+++.++..++  +++.    ..+. ..+++++++|+.+..  +.
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~~  127 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR--SNIE----RANL-NDRVEVRTGLALDSLQQIE  127 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEESCHHHHHHHHH
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEEcCHHHHHHHHH
Confidence            456788999999999999999998765 446999999997544443  3333    3343 246999999997632  22


Q ss_pred             ccc-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        129 EKI-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       129 ~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +.. ..+|+|++...  .+.....+.++.++|||||++++.+.+
T Consensus       128 ~~~~~~fD~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          128 NEKYEPFDFIFIDAD--KQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             HTTCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             hcCCCCcCEEEEcCC--cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            111 23677887644  345678899999999999999986443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.51  E-value=8.3e-14  Score=117.90  Aligned_cols=121  Identities=15%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +.....+...+...++.+|||||||+|..+..+++..+..+|+|+|+|+.++..++  ++++    ..+. ..+++++++
T Consensus        40 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~~  112 (233)
T 2gpy_A           40 LLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAH--KHVK----ALGL-ESRIELLFG  112 (233)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHH--HHHH----HTTC-TTTEEEECS
T ss_pred             HHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEEC
Confidence            34444455555667889999999999999999998875556999999997544443  3333    2343 247999999


Q ss_pred             CCCCC-cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        121 DFLTE-EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       121 D~~~l-~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      |+.+. +.......+|+|+++...  .+....+.++.+.|||||++++.+.
T Consensus       113 d~~~~~~~~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          113 DALQLGEKLELYPLFDVLFIDAAK--GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             CGGGSHHHHTTSCCEEEEEEEGGG--SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CHHHHHHhcccCCCccEEEECCCH--HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            99874 432101246888887553  3678889999999999999998743

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.51  E-value=8.1e-14  Score=124.50  Aligned_cols=109  Identities=20%  Similarity=0.323  Sum_probs=81.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +.+.+.+.++.+|||||||+|.++..+++. |..+|+|+|+|+ ++..++  ++++    ..+. ..+++++++|+.+++
T Consensus        30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~-~~~~a~--~~~~----~~~~-~~~i~~~~~d~~~~~  100 (328)
T 1g6q_1           30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAK--ELVE----LNGF-SDKITLLRGKLEDVH  100 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHH--HHHH----HTTC-TTTEEEEESCTTTSC
T ss_pred             HHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHH-HHHHHH--HHHH----HcCC-CCCEEEEECchhhcc
Confidence            444555678899999999999999988775 766799999994 444433  3332    2343 247999999999988


Q ss_pred             ccccccceEEEEEecc----ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        127 HREKITQASIVFVNNF----AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~----~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      +++.  .+|+|+++..    .+...+...+.++.+.|||||+++
T Consensus       101 ~~~~--~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          101 LPFP--KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CSSS--CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCC--cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            6543  4678887643    234557788899999999999997

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.51  E-value=8e-14  Score=122.23  Aligned_cols=110  Identities=15%  Similarity=0.241  Sum_probs=77.3

Q ss_pred             HHHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE-EEEc
Q psy17227         43 LISRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR-LVKG  120 (268)
Q Consensus        43 ~~~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~-~~~g  120 (268)
                      .+..+++.+++. ++.+|||||||||.++..+++. |..+|+|||+|+.|+..+.     +        ...++. +...
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~-----r--------~~~rv~~~~~~  137 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKL-----R--------QDDRVRSMEQY  137 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHH-----H--------TCTTEEEECSC
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHH-----H--------hCcccceeccc
Confidence            566788888876 5779999999999999988775 7767999999999766532     1        123443 3344


Q ss_pred             CCCCCcccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+..++..+ +...+|+++++..++  .+...+.+++|+|||||++++.
T Consensus       138 ni~~l~~~~l~~~~fD~v~~d~sf~--sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          138 NFRYAEPVDFTEGLPSFASIDVSFI--SLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CGGGCCGGGCTTCCCSEEEECCSSS--CGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CceecchhhCCCCCCCEEEEEeeHh--hHHHHHHHHHHHcCcCCEEEEE
Confidence            555544211 111256777765544  4578899999999999999875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.50  E-value=3e-14  Score=129.20  Aligned_cols=108  Identities=12%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+++.++ +.++.+|||||||+|..+..+++.++..+++++|+ +.++..++              ...+++++++|+.
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~  262 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP--------------PLSGIEHVGGDMF  262 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------CCTTEEEEECCTT
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh--------------hcCCCEEEeCCcc
Confidence            34666665 77889999999999999999999886666899999 65322221              1257999999998


Q ss_pred             CCcccccccceEEEEEeccc-cCcCHH--HHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFA-FGPTVD--HALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~-~~~~~~--~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      + ++++    +|+|++..++ |+++..  ..+++++++|||||++++.+...
T Consensus       263 ~-~~~~----~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          263 A-SVPQ----GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             T-CCCC----EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             c-CCCC----CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            7 5542    5778777664 566665  88999999999999999875443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.50  E-value=8.1e-14  Score=115.13  Aligned_cols=104  Identities=12%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +..+.++.+ ++++.+|||||||+|..+..+++. +. +|+|||+++..                   ...+++++++|+
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~-~V~gvD~~~~~-------------------~~~~v~~~~~D~   71 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-AR-KIISIDLQEME-------------------EIAGVRFIRCDI   71 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CS-EEEEEESSCCC-------------------CCTTCEEEECCT
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CC-cEEEEeccccc-------------------cCCCeEEEEccc
Confidence            345666665 578999999999999999998876 44 49999999840                   124899999999


Q ss_pred             CCCccccc----c-----cceEEEEEeccccC-----cC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREK----I-----TQASIVFVNNFAFG-----PT-------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~----~-----~d~dvv~~~~~~~~-----~~-------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+..+.    .     ..+|+|+++.....     .+       ....+..+.++|||||+|++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           72 FKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             TSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            98653210    0     15789998754221     11       234577888999999999974

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.50  E-value=5.4e-14  Score=118.24  Aligned_cols=114  Identities=13%  Similarity=0.177  Sum_probs=78.0

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH  127 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~  127 (268)
                      .+...++.+|||||||+|..++.+|+..+ ..+|+|||+|+.++..++  ++++    ..+. ..+++++++|+.+ ++.
T Consensus        53 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~l~~  125 (221)
T 3u81_A           53 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQ--QMLN----FAGL-QDKVTILNGASQDLIPQ  125 (221)
T ss_dssp             HHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH--HHHH----HHTC-GGGEEEEESCHHHHGGG
T ss_pred             HHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHH--HHHH----HcCC-CCceEEEECCHHHHHHH
Confidence            33456778999999999999999988653 346999999997555543  3333    2343 2479999999866 332


Q ss_pred             ccc---ccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        128 REK---ITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       128 ~~~---~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ...   ...+|+|+++... +..+....+..+ +.|||||++++.+..
T Consensus       126 ~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          126 LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             TTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             HHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            110   0246788887653 333344556666 999999999986443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=9.8e-15  Score=120.99  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ...+..+++.+.. .++.+|||+|||+|.++..+++..+..+++|+|+|+.++..++  +++..    .+  . ++++++
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~--~~~~~----~~--~-~~~~~~   85 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVAR--RNAER----FG--A-VVDWAA   85 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------------CCH
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHHHH----hC--C-ceEEEE
Confidence            3445667777765 7889999999999999999998765556999999998665554  33221    12  1 789999


Q ss_pred             cCCCCCcccc---cccceEEEEEeccccCcC-H--------------------------HHHHHHHHhcCCCCcE-EEEe
Q psy17227        120 GDFLTEEHRE---KITQASIVFVNNFAFGPT-V--------------------------DHALKERFQDLKDGAR-IVSS  168 (268)
Q Consensus       120 gD~~~l~~~~---~~~d~dvv~~~~~~~~~~-~--------------------------~~~l~e~~r~LkpGG~-~i~~  168 (268)
                      +|+.+ ++++   ....+|+|+++..++... .                          ...+.++.++|||||+ +++.
T Consensus        86 ~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           86 ADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             cchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99987 5543   112467788865443211 1                          5566778899999999 5553

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.50  E-value=1.2e-13  Score=120.50  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++...  ++++.+|||+|||+|.+++.+|+.... +|+|+|+|+.++..++  ++++    ..+.. .+++++++|+.+
T Consensus       117 ~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~--~n~~----~n~~~-~~v~~~~~D~~~  186 (278)
T 2frn_A          117 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLV--ENIH----LNKVE-DRMSAYNMDNRD  186 (278)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHH--HHHH----HTTCT-TTEEEECSCTTT
T ss_pred             HHHHHh--CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHH--HHHH----HcCCC-ceEEEEECCHHH
Confidence            344444  567999999999999999998886444 6999999998555544  3333    23432 369999999999


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++. +  ..+|+|+++..   ......+.+++++|||||++++.
T Consensus       187 ~~~-~--~~fD~Vi~~~p---~~~~~~l~~~~~~LkpgG~l~~~  224 (278)
T 2frn_A          187 FPG-E--NIADRILMGYV---VRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CCC-C--SCEEEEEECCC---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             hcc-c--CCccEEEECCc---hhHHHHHHHHHHHCCCCeEEEEE
Confidence            875 2  35678888633   44567788999999999999986

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.6e-13  Score=114.35  Aligned_cols=113  Identities=16%  Similarity=0.242  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +.....+++.+.+.++.+|||||||+|.++..+++..+. .+|+|+|+|+.++..++  +++.    ..+.  .++++++
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~--~~v~~~~  134 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAE--RTLR----KLGY--DNVIVIV  134 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHH----HHTC--TTEEEEE
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HcCC--CCeEEEE
Confidence            556677888889999999999999999999999988742 45999999997544443  3332    2232  4799999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+......+  ..+|+|+++..++...     .++.+.|||||++++.
T Consensus       135 ~d~~~~~~~~--~~fD~v~~~~~~~~~~-----~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          135 GDGTLGYEPL--APYDRIYTTAAGPKIP-----EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             SCGGGCCGGG--CCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEE
T ss_pred             CCcccCCCCC--CCeeEEEECCchHHHH-----HHHHHHcCCCcEEEEE
Confidence            9985432212  2467888776643222     4888999999999986

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.49  E-value=4e-14  Score=121.22  Aligned_cols=111  Identities=14%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-  129 (268)
                      ...++.+|||||||+|..++.+|+..+ ..+|+|||+++.++..++  ++++    ..|. ..+++++++|+.+..... 
T Consensus        57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~--~~~~----~~g~-~~~i~~~~gda~~~l~~~~  129 (242)
T 3r3h_A           57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH--PYWR----EAKQ-EHKIKLRLGPALDTLHSLL  129 (242)
T ss_dssp             HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH--HHHH----HTTC-TTTEEEEESCHHHHHHHHH
T ss_pred             hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEEcCHHHHHHHHh
Confidence            455678999999999999999998764 446999999998766654  3333    2343 258999999997643110 


Q ss_pred             -c--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        130 -K--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       130 -~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                       .  ...+|+|+++..  ..+....+.+++++|||||++++.+..
T Consensus       130 ~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          130 NEGGEHQFDFIFIDAD--KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence             0  135788888754  345677899999999999999986443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.49  E-value=2.4e-13  Score=118.27  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=86.4

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .....+..+++.+. .++.+|||||||+|.+++.++...+..+|+|+|+|+.++..++  ++++    ..+.  .+++++
T Consensus        94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~--~n~~----~~~~--~~v~~~  164 (276)
T 2b3t_A           94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ--RNAQ----HLAI--KNIHIL  164 (276)
T ss_dssp             THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH--HHHH----HHTC--CSEEEE
T ss_pred             hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CceEEE
Confidence            34445566777776 6788999999999999999998777667999999998555554  3333    2333  379999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccCc--------------------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFGP--------------------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~~--------------------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+. +++  ..+|+|+++..++..                          .....+.++.+.|||||++++.
T Consensus       165 ~~d~~~~-~~~--~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          165 QSDWFSA-LAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             CCSTTGG-GTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             Ecchhhh-ccc--CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999873 222  247888887543321                          2356678889999999999986

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.49  E-value=1.3e-13  Score=116.29  Aligned_cols=111  Identities=21%  Similarity=0.258  Sum_probs=81.6

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ..+..+..+++.+++.++.+|||||||+|.++..++.. + .+|+|+|+|+.++..++  +++.        ..++++++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~--~~~~--------~~~~v~~~  121 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-V-DKVVSVEINEKMYNYAS--KLLS--------YYNNIKLI  121 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-S-SEEEEEESCHHHHHHHH--HHHT--------TCSSEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-c-CEEEEEeCCHHHHHHHH--HHHh--------hcCCeEEE
Confidence            34566778888999999999999999999999998886 4 45999999987444433  3222        12289999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+....+.  .+|+|+++..++.-.     .++.++|||||++++.
T Consensus       122 ~~d~~~~~~~~~--~fD~v~~~~~~~~~~-----~~~~~~L~pgG~l~~~  164 (231)
T 1vbf_A          122 LGDGTLGYEEEK--PYDRVVVWATAPTLL-----CKPYEQLKEGGIMILP  164 (231)
T ss_dssp             ESCGGGCCGGGC--CEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEE
T ss_pred             ECCcccccccCC--CccEEEECCcHHHHH-----HHHHHHcCCCcEEEEE
Confidence            999987322222  467888776543221     3688999999999986

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.49  E-value=3.8e-14  Score=119.98  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...++..  +.++.+|||||||+|.++..+++.   .+++|+|+|+.++..++  +++..    .   ..+++++++|+.
T Consensus        24 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~--~~~~~----~---~~~~~~~~~d~~   89 (243)
T 3d2l_A           24 VAWVLEQ--VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQ--EKAME----T---NRHVDFWVQDMR   89 (243)
T ss_dssp             HHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHH--HHHHH----T---TCCCEEEECCGG
T ss_pred             HHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHH--Hhhhh----c---CCceEEEEcChh
Confidence            3445555  456789999999999999988775   45999999997555543  33221    1   247999999999


Q ss_pred             CCcccccccceEEEEEe--ccccC---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVN--NFAFG---PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~--~~~~~---~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++ .  .+|+|++.  .+.|.   .+....++++.++|||||++++.
T Consensus        90 ~~~~~-~--~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           90 ELELP-E--PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             GCCCS-S--CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCC-C--CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            88764 2  46778775  34455   45677899999999999999974

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.49  E-value=1.8e-13  Score=117.07  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc--ccccEEEEEcCCCC-Cc--c
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK--RHGEFRLVKGDFLT-EE--H  127 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~--~~~~i~~~~gD~~~-l~--~  127 (268)
                      +.++.+|||||||+|.+++.+|+..+...|+|||+|+.++..++  ++++........  ...+++++++|+.+ ++  +
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVE--DRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHH--HHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHH--HHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence            45788999999999999999998876546999999998555544  333321100000  12489999999987 55  4


Q ss_pred             cccccceEEEEEeccccCcC---------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REKITQASIVFVNNFAFGPT---------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~~~---------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.  .+|.|+++..--+.+         ....+.++.++|||||++++.
T Consensus       125 ~~~--~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 EKG--QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CTT--CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc--ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            333  345565431111110         047889999999999999874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.49  E-value=4.7e-14  Score=118.51  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-cc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HR  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~  128 (268)
                      ...++.+|||||||+|..+..++...+ ..+|+|+|+|+.++..++  ++++    ..+.. .+++++++|+.+. + +.
T Consensus        61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~~-~~v~~~~~d~~~~~~~~~  133 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAK--EYWE----KAGLS-DKIGLRLSPAKDTLAELI  133 (225)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH--HHHH----HTTCT-TTEEEEESCHHHHHHHHH
T ss_pred             HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH--HHHH----HCCCC-CceEEEeCCHHHHHHHhh
Confidence            445778999999999999999998765 456999999997544443  3332    33432 4699999999653 2 11


Q ss_pred             ccc--cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        129 EKI--TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       129 ~~~--~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      ...  ..+|+|+++..  ..+....+.++++.|||||++++.+.+
T Consensus       134 ~~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          134 HAGQAWQYDLIYIDAD--KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             TTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hccCCCCccEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            100  35788887543  345777899999999999999987443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.49  E-value=2.6e-13  Score=108.56  Aligned_cols=104  Identities=18%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      +..+++.+. +.++.+|||+|||+|.++..+++..+. .+++|+|+|+ +..                  ..+++++++|
T Consensus        10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~------------------~~~~~~~~~d   70 (180)
T 1ej0_A           10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP------------------IVGVDFLQGD   70 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC------------------CTTEEEEESC
T ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc------------------cCcEEEEEcc
Confidence            455666665 678999999999999999999988642 4699999998 432                  1479999999


Q ss_pred             CCCCc--------ccccccceEEEEEeccccC-cCH-----------HHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEE--------HREKITQASIVFVNNFAFG-PTV-----------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~--------~~~~~~d~dvv~~~~~~~~-~~~-----------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.+        +++.  .+|+|+++..+++ ...           ...+.++.++|||||.+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~--~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  135 (180)
T 1ej0_A           71 FRDELVMKALLERVGDS--KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             TTSHHHHHHHHHHHTTC--CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccchhhhhhhccCCCC--ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            99876        4433  4678888766543 333           57789999999999999986

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.49  E-value=1.8e-14  Score=123.61  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH-------------HHHhcc--------
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW-------------MQWYGK--------  110 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~-------------~~~~~~--------  110 (268)
                      +..++.+|||||||+|.++..++.. +...|+|+|+|+.++..++  +++...             +...+.        
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQ--KWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE  129 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHH--HHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHH--HHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence            5567889999999999999887764 4445999999997555543  222100             000000        


Q ss_pred             --ccccE-EEEEcCCCCCcc-cc-cccceEEEEEecccc-----CcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        111 --RHGEF-RLVKGDFLTEEH-RE-KITQASIVFVNNFAF-----GPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       111 --~~~~i-~~~~gD~~~l~~-~~-~~~d~dvv~~~~~~~-----~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                        ...++ +++++|+.+.+. ++ ....+|+|++...++     .+++...+.++.++|||||++++...
T Consensus       130 ~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          130 EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence              00138 999999998643 33 112467787766543     34678889999999999999998743

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.48  E-value=1.5e-13  Score=116.65  Aligned_cols=113  Identities=15%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+.....+++.+++.++.+|||||||+|.++..+++..+ .+|+|+|+|+.++..++  +++.    ..+.  .++++++
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~--~~~~----~~~~--~~v~~~~  146 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAK--RNLE----RAGV--KNVHVIL  146 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHH--HHHH----HTTC--CSEEEEE
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHH--HHHH----HcCC--CCcEEEE
Confidence            455667788888999999999999999999999999877 45999999997544443  3332    2332  4699999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+ ..++++.. .+|+|+++...+..     ..++.+.|||||++++.
T Consensus       147 ~d~-~~~~~~~~-~fD~Ii~~~~~~~~-----~~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          147 GDG-SKGFPPKA-PYDVIIVTAGAPKI-----PEPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             SCG-GGCCGGGC-CEEEEEECSBBSSC-----CHHHHHTEEEEEEEEEE
T ss_pred             CCc-ccCCCCCC-CccEEEECCcHHHH-----HHHHHHhcCCCcEEEEE
Confidence            998 34443332 36788876554321     13788999999999986

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.48  E-value=5.9e-14  Score=117.08  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+++.+ ...++.+|||||||+|.++..+    +.. ++|+|+|+.                       +++++++|+.+
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l----~~~-v~~~D~s~~-----------------------~~~~~~~d~~~  108 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSI----RNP-VHCFDLASL-----------------------DPRVTVCDMAQ  108 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHC----CSC-EEEEESSCS-----------------------STTEEESCTTS
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHh----hcc-EEEEeCCCC-----------------------CceEEEecccc
Confidence            344444 2467789999999999998765    234 999999983                       45689999999


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|+++.  .+|+|++...+|.+++...+.++.++|||||++++.+
T Consensus       109 ~~~~~~--~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~  151 (215)
T 2zfu_A          109 VPLEDE--SVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAE  151 (215)
T ss_dssp             CSCCTT--CEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCC--CEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEE
Confidence            887654  4577887777677899999999999999999999873

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.48  E-value=3e-13  Score=118.50  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..+++.+...++.+|||||||+|.+++.++.. +..+|+|+|+|+.++.+++  ++++    ..+.. .+++|+++
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~--~n~~----~~~l~-~~v~~~~~  180 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIAR--KNAE----RHGVS-DRFFVRKG  180 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHH--HHHH----HTTCT-TSEEEEES
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CceEEEEC
Confidence            445556666665557789999999999999999988 6667999999998655554  3333    23432 35999999


Q ss_pred             CCCCCccccccc-ceEEEEEecccc------------CcC--------HHHHHHHHH-hcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKIT-QASIVFVNNFAF------------GPT--------VDHALKERF-QDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~-d~dvv~~~~~~~------------~~~--------~~~~l~e~~-r~LkpGG~~i~~  168 (268)
                      |+.+. ++. .| .+|+|++|..+.            .|.        ....++++. +.|||||++++.
T Consensus       181 D~~~~-~~~-~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          181 EFLEP-FKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             STTGG-GGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             cchhh-ccc-ccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            99873 222 22 127888874332            211        226789999 999999999985

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.48  E-value=1.6e-13  Score=125.08  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||+|||+|.+++.+++. +. +|+|+|+|+.++..++  +++..    .+   .+++++++|+.+.+.++  .
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~-g~-~V~gvDis~~al~~A~--~n~~~----~~---~~v~~~~~D~~~~~~~~--~  297 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARM-GA-EVVGVEDDLASVLSLQ--KGLEA----NA---LKAQALHSDVDEALTEE--A  297 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHT-TC-EEEEEESBHHHHHHHH--HHHHH----TT---CCCEEEECSTTTTSCTT--C
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHc-CC-EEEEEECCHHHHHHHH--HHHHH----cC---CCeEEEEcchhhccccC--C
Confidence            347889999999999999998876 55 5999999997555544  33332    22   25899999999877543  3


Q ss_pred             ceEEEEEeccccC------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFG------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++..+|.      .+....+.++.++|||||++++.
T Consensus       298 ~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          298 RFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            5688888876554      44667889999999999999975

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.47  E-value=5.1e-13  Score=113.56  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +..+..++..+++.++++|||+|||+|.++..+++. +. +++|+|+|+.+...++  +++.    ..+. ..+++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~~~~~~~  147 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AG-EVWTFEAVEEFYKTAQ--KNLK----KFNL-GKNVKFFNV  147 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEECSCHHHHHHHH--HHHH----HTTC-CTTEEEECS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CC-EEEEEecCHHHHHHHH--HHHH----HcCC-CCcEEEEEc
Confidence            455667888889999999999999999999999887 44 5999999997544443  3332    2332 258999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+.+..+++.  .+|+|++    +.+++...+.++.+.|||||++++.
T Consensus       148 d~~~~~~~~~--~~D~v~~----~~~~~~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          148 DFKDAEVPEG--IFHAAFV----DVREPWHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             CTTTSCCCTT--CBSEEEE----CSSCGGGGHHHHHHHBCTTCEEEEE
T ss_pred             ChhhcccCCC--cccEEEE----CCcCHHHHHHHHHHHcCCCCEEEEE
Confidence            9988542333  3567776    3456778899999999999999986

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.47  E-value=2.8e-13  Score=111.12  Aligned_cols=104  Identities=11%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCC---------cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGC---------KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~---------~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      .+...+. ++++.+|||||||+|.++..+++..+.         .+|+|+|+|+.+                   ...++
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------------------~~~~~   72 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------------------PLEGA   72 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------------------CCTTC
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------------------cCCCC
Confidence            4444444 678999999999999999999998764         569999999841                   12468


Q ss_pred             EEE-EcCCCCCcccc------cccceEEEEEeccccC-----cCH-------HHHHHHHHhcCCCCcEEEEe
Q psy17227        116 RLV-KGDFLTEEHRE------KITQASIVFVNNFAFG-----PTV-------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~-~gD~~~l~~~~------~~~d~dvv~~~~~~~~-----~~~-------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++ ++|+.+.+...      ....+|+|+++...+.     .+.       ...+.+++++|||||+|++.
T Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (196)
T 2nyu_A           73 TFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK  144 (196)
T ss_dssp             EEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            899 99998764210      1124688887643221     222       36788999999999999986

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.47  E-value=4.1e-13  Score=120.04  Aligned_cols=122  Identities=17%  Similarity=0.216  Sum_probs=85.7

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHH---Hhcc--cc
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQ---WYGK--RH  112 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~---~~~~--~~  112 (268)
                      ..+.....++..+++.++.+|||+|||+|.++..+++..|. .+|+|+|+++.++..++  +++.+.-.   ..+.  ..
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~--~~~~~~~~~~~ln~~~~~~  166 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK--KNYKHWRDSWKLSHVEEWP  166 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHH--HHHHHHHHHHTTTCSSCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--HHHHHhhcccccccccccC
Confidence            33445677888889999999999999999999999987653 56999999997555544  43332100   0010  02


Q ss_pred             ccEEEEEcCCCCC--cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        113 GEFRLVKGDFLTE--EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       113 ~~i~~~~gD~~~l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++++++|+.+.  ++++.  .+|+|+++.    +++...+.++.++|||||++++.
T Consensus       167 ~~v~~~~~d~~~~~~~~~~~--~fD~V~~~~----~~~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          167 DNVDFIHKDISGATEDIKSL--TFDAVALDM----LNPHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             CCEEEEESCTTCCC---------EEEEEECS----SSTTTTHHHHGGGEEEEEEEEEE
T ss_pred             CceEEEECChHHcccccCCC--CeeEEEECC----CCHHHHHHHHHHhcCCCcEEEEE
Confidence            4899999999986  34333  467888753    33344789999999999999976

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.47  E-value=2.6e-13  Score=123.15  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ...+|++|||||||+|.+++.+| +.|+.+|+|||.|+ ++..|+  +.++    ..|.. .+|+++++|++++.+++  
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa-~aGA~~V~ave~s~-~~~~a~--~~~~----~n~~~-~~i~~i~~~~~~~~lpe--  148 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCA-QAGARRVYAVEASA-IWQQAR--EVVR----FNGLE-DRVHVLPGPVETVELPE--  148 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHH-HTTCSEEEEEECST-THHHHH--HHHH----HTTCT-TTEEEEESCTTTCCCSS--
T ss_pred             HhcCCCEEEEeCCCccHHHHHHH-HhCCCEEEEEeChH-HHHHHH--HHHH----HcCCC-ceEEEEeeeeeeecCCc--
Confidence            34578999999999999998655 47888899999997 444433  3332    34543 58999999999987764  


Q ss_pred             cceEEEEEec---cccCc-CHHHHHHHHHhcCCCCcEEE
Q psy17227        132 TQASIVFVNN---FAFGP-TVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       132 ~d~dvv~~~~---~~~~~-~~~~~l~e~~r~LkpGG~~i  166 (268)
                       .+|+|+++.   .++.. .+...+....|.|||||+++
T Consensus       149 -~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          149 -QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             -CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             -cccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence             578888743   23334 45666777779999999987

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.47  E-value=7.8e-14  Score=112.82  Aligned_cols=101  Identities=13%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             HHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ...+++.+..  .++.+|||||||+|.++..+++..   +|+|+|+|+.|+..                 ..+++++++|
T Consensus        10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-----------------~~~~~~~~~d   69 (170)
T 3q87_B           10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-----------------HRGGNLVRAD   69 (170)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-----------------CSSSCEEECS
T ss_pred             HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-----------------ccCCeEEECC
Confidence            3444444444  567799999999999999888754   59999999862221                 2478999999


Q ss_pred             CCCCcccccccceEEEEEeccccC-c---------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG-P---------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~-~---------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+ ++++.  .+|+|+++..+++ +         +....+.++.+.| |||++++.
T Consensus        70 ~~~-~~~~~--~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~  122 (170)
T 3q87_B           70 LLC-SINQE--SVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLL  122 (170)
T ss_dssp             TTT-TBCGG--GCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEE
T ss_pred             hhh-hcccC--CCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEE
Confidence            988 54444  4567888766543 2         2357788999988 99999875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.46  E-value=1.4e-13  Score=114.73  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=78.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~  130 (268)
                      ..++.+|||||||+|..++.+++..+ ..+|+|+|+|+.++..++  ++++    ..+. ..+++++++|+.+. +..+ 
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~~-  125 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR--RMLH----DNGL-IDRVELQVGDPLGIAAGQR-  125 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHH--HHHH----HHSG-GGGEEEEESCHHHHHTTCC-
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HCCC-CceEEEEEecHHHHhccCC-
Confidence            34678999999999999999988764 446999999997555543  3333    2333 24799999999763 3322 


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                       . +|+|+++.  ...+....+.++.++|||||++++.+.
T Consensus       126 -~-fD~v~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          126 -D-IDILFMDC--DVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             -S-EEEEEEET--TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             -C-CCEEEEcC--ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence             2 68888873  345678889999999999999998643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.46  E-value=7.9e-14  Score=116.93  Aligned_cols=92  Identities=22%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      ++.+|||||||+|.++..++..      +|+|+|+.++..++      +         .+++++++|+.+++++++.  +
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~------~---------~~~~~~~~d~~~~~~~~~~--f  103 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIAR------K---------RGVFVLKGTAENLPLKDES--F  103 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHH------H---------TTCEEEECBTTBCCSCTTC--E
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHH------h---------cCCEEEEcccccCCCCCCC--e
Confidence            3789999999999999876543      99999987444332      1         1688999999998876543  5


Q ss_pred             EEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        135 SIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       135 dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      |+|++... .|.+++...+.++.++|||||++++..
T Consensus       104 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          104 DFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            66666554 577889999999999999999999863

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.46  E-value=1.6e-13  Score=123.75  Aligned_cols=117  Identities=14%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+++.+..+|||||||+|.++..++++++..+++..|+. .++..  +++...    ..+  .++|+|+.+|+.+
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp-~v~~~--a~~~~~----~~~--~~rv~~~~gD~~~  239 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIP-EVVWT--AKQHFS----FQE--EEQIDFQEGDFFK  239 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECH-HHHHH--HHHHSC----C----CCSEEEEESCTTT
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCH-HHHHH--HHHhhh----hcc--cCceeeecCcccc
Confidence            34666778888899999999999999999999988778999984 33332  222221    111  3589999999987


Q ss_pred             CcccccccceEEEEEecccc-CcCH--HHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        125 EEHREKITQASIVFVNNFAF-GPTV--DHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-~~~~--~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      .|.+    ++|+|++..++| |++.  ...|++++++|||||++++.+.+.++
T Consensus       240 ~~~~----~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~  288 (353)
T 4a6d_A          240 DPLP----EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE  288 (353)
T ss_dssp             SCCC----CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred             CCCC----CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence            6543    457777776654 5553  45689999999999999998776554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.46  E-value=9.3e-14  Score=125.01  Aligned_cols=106  Identities=14%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             HHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         48 IDQI--NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        48 l~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +..+  ++.++.+|||||||+|.++..+++.++..+++|+|+ +.++..++              ...+++|+++|+.+ 
T Consensus       179 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~~-  242 (352)
T 1fp2_A          179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS--------------GSNNLTYVGGDMFT-  242 (352)
T ss_dssp             HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------CBTTEEEEECCTTT-
T ss_pred             HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc--------------cCCCcEEEeccccC-
Confidence            4444  466788999999999999999998876656999999 75332221              12469999999976 


Q ss_pred             cccccccceEEEEEecc-ccCcCHH--HHHHHHHhcCCC---CcEEEEeCCCCC
Q psy17227        126 EHREKITQASIVFVNNF-AFGPTVD--HALKERFQDLKD---GARIVSSKSFCP  173 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~-~~~~~~~--~~l~e~~r~Lkp---GG~~i~~~~~~~  173 (268)
                      +++.    +|+|++..+ +|+++..  ..+++++++|||   ||++++.+...+
T Consensus       243 ~~p~----~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          243 SIPN----ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             CCCC----CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             CCCC----ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            5432    566776665 4577666  889999999999   999998755443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.45  E-value=1.9e-13  Score=117.91  Aligned_cols=95  Identities=13%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .++.+|||||||+|.++..+++..+...++|+|+|+.++..++      +    .   ..++.++++|+.++|+.+..  
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~------~----~---~~~~~~~~~d~~~~~~~~~~--  148 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA------K----R---YPQVTFCVASSHRLPFSDTS--  148 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH------H----H---CTTSEEEECCTTSCSBCTTC--
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH------H----h---CCCcEEEEcchhhCCCCCCc--
Confidence            6788999999999999999988764445999999987444432      1    1   24789999999998876654  


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|+|++...      ...+.++.++|||||++++..
T Consensus       149 fD~v~~~~~------~~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          149 MDAIIRIYA------PCKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEEEESC------CCCHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEeCC------hhhHHHHHHhcCCCcEEEEEE
Confidence            566776433      124899999999999999863

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=2.6e-13  Score=118.09  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      ..+.++++|||+|||+|.+++.+|+..+..+|+|+|+|+.++..++  ++++    ..+.  .+++++++|+.+++. . 
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~--~n~~----~n~l--~~~~~~~~d~~~~~~-~-  184 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC--ENIK----LNKL--NNVIPILADNRDVEL-K-  184 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH--HHHH----HTTC--SSEEEEESCGGGCCC-T-
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HcCC--CCEEEEECChHHcCc-c-
Confidence            3478899999999999999999998866556999999998555544  4333    2333  478999999988743 2 


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ..+|+|+++..   .+....+.++.+.|||||+++++
T Consensus       185 -~~~D~Vi~d~p---~~~~~~l~~~~~~LkpgG~l~~s  218 (272)
T 3a27_A          185 -DVADRVIMGYV---HKTHKFLDKTFEFLKDRGVIHYH  218 (272)
T ss_dssp             -TCEEEEEECCC---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -CCceEEEECCc---ccHHHHHHHHHHHcCCCCEEEEE
Confidence             35788888744   26677889999999999999976

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.45  E-value=3.2e-13  Score=117.39  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=89.3

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      ..+.....++..+++.++.+|||+|||+|.++..+++..+ ..+++|+|+|+.++..++  ++++    ..+. ..++++
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~~-~~~v~~  168 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE--SNLT----KWGL-IERVTI  168 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH--HHHH----HTTC-GGGEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH--HHHH----HcCC-CCCEEE
Confidence            4455667788889999999999999999999999998743 456999999997555443  3333    2332 247999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +++|+.+. +++.  .+|+|+++    .+++...+.++.++|||||++++..
T Consensus       169 ~~~d~~~~-~~~~--~~D~V~~~----~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          169 KVRDISEG-FDEK--DVDALFLD----VPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             ECCCGGGC-CSCC--SEEEEEEC----CSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             EECCHHHc-ccCC--ccCEEEEC----CcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99999875 3333  46788873    4677788999999999999999863

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.45  E-value=5.8e-13  Score=111.95  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhcc---cccc
Q psy17227         41 FDLISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGK---RHGE  114 (268)
Q Consensus        41 ~~~~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~  114 (268)
                      +.....+++.+.  +.++.+|||||||+|..+..+++..+. .+|+|+|+|+.++..++  +++.+    .+.   ...+
T Consensus        61 p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~--~~~~~----~~~~~~~~~~  134 (226)
T 1i1n_A           61 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSV--NNVRK----DDPTLLSSGR  134 (226)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHHH----HCTHHHHTSS
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HHHHh----hcccccCCCc
Confidence            344556777775  789999999999999999999987653 36999999997555443  33321    221   1248


Q ss_pred             EEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        115 FRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       115 i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++++|+.+.+..+.  .+|+|+++..++     ..+.++.+.|||||+++++
T Consensus       135 v~~~~~d~~~~~~~~~--~fD~i~~~~~~~-----~~~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          135 VQLVVGDGRMGYAEEA--PYDAIHVGAAAP-----VVPQALIDQLKPGGRLILP  181 (226)
T ss_dssp             EEEEESCGGGCCGGGC--CEEEEEECSBBS-----SCCHHHHHTEEEEEEEEEE
T ss_pred             EEEEECCcccCcccCC--CcCEEEECCchH-----HHHHHHHHhcCCCcEEEEE
Confidence            9999999986554333  467888765542     1246888999999999986

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.45  E-value=9.9e-15  Score=124.05  Aligned_cols=112  Identities=19%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             HHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++..+ ...++.+|||+|||+|.++..++.. +. +|+|+|+|+.++..++  ++++    ..+. ..+++++++|+.
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~-~~-~v~~vD~s~~~~~~a~--~~~~----~~~~-~~~~~~~~~d~~  137 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT-GM-RVIAIDIDPVKIALAR--NNAE----VYGI-ADKIEFICGDFL  137 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT-TC-EEEEEESCHHHHHHHH--HHHH----HTTC-GGGEEEEESCHH
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHH--HHHH----HcCC-CcCeEEEECChH
Confidence            3444433 2347899999999999999999875 54 4999999997555543  3333    2332 148999999998


Q ss_pred             CCcccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++ ++.  .+|+|+++..++. .+....+.++.++|||||.+++.
T Consensus       138 ~~~-~~~--~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          138 LLA-SFL--KADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             HHG-GGC--CCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             Hhc-ccC--CCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            876 233  4567888766544 44444677888999999997764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.45  E-value=2.1e-13  Score=122.49  Aligned_cols=113  Identities=10%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ....+++.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.++..++  +++.    ..+   .+++++++|+
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~--~~~~----~~~---~~~~~~~~d~  254 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR--ATLA----ANG---VEGEVFASNV  254 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHH--HHHH----HTT---CCCEEEECST
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HhC---CCCEEEEccc
Confidence            456677888777788999999999999999988765445999999997555443  3332    222   2467899999


Q ss_pred             CCCcccccccceEEEEEeccccC------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFG------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+  +.  .+|+|+++..+|.      .+....+++++++|||||.+++.
T Consensus       255 ~~~~--~~--~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          255 FSEV--KG--RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             TTTC--CS--CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccc--cC--CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            7754  32  5788988877653      33567799999999999999975

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.44  E-value=3.2e-13  Score=126.57  Aligned_cols=110  Identities=17%  Similarity=0.236  Sum_probs=82.5

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+++.+...++.+|||||||+|.+++.+|+ .+..+|+|+|+|+ ++..|+  ++++    ..+. ..+++++++|+.++
T Consensus       149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~--~~~~----~~gl-~~~v~~~~~d~~~~  219 (480)
T 3b3j_A          149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAE--VLVK----SNNL-TDRIVVIPGKVEEV  219 (480)
T ss_dssp             HHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHH--HHHH----HTTC-TTTEEEEESCTTTC
T ss_pred             HHHHhhhhcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHH--HHHH----HcCC-CCcEEEEECchhhC
Confidence            466666677889999999999999998877 5665699999997 554443  3333    2343 25899999999987


Q ss_pred             cccccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEE
Q psy17227        126 EHREKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      ++++   .+|+|+++.. .|.  ++....+.++.+.|||||+++.
T Consensus       220 ~~~~---~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          220 SLPE---QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCSS---CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             ccCC---CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            7543   4788888765 332  4456678888899999999984

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.44  E-value=3.7e-13  Score=113.51  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=82.9

Q ss_pred             cHHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCC------cEEEEEeCCCChhHHHHHHHHHHHHHHHhc--
Q psy17227         40 SFDLISRMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATGC------KICWGVEKADLPAKYAEMHTVFKRWMQWYG--  109 (268)
Q Consensus        40 ~~~~~~~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~------~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~--  109 (268)
                      .+.....+++.+  .+.++.+|||||||+|.++..+++..+.      .+|+|+|+++.++..++  +++.+    .+  
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~--~~~~~----~~~~  140 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK--ANLNT----DDRS  140 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH--HHHHH----HHHH
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHH--HHHHh----cCcc
Confidence            344566778877  5889999999999999999999987663      35999999997555544  33322    11  


Q ss_pred             -cccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 -KRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 -~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ....+++++++|+.+ ++++. ..+|+|++...++.     .+.++.+.|||||++++.
T Consensus       141 ~~~~~~v~~~~~d~~~-~~~~~-~~fD~I~~~~~~~~-----~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          141 MLDSGQLLIVEGDGRK-GYPPN-APYNAIHVGAAAPD-----TPTELINQLASGGRLIVP  193 (227)
T ss_dssp             HHHHTSEEEEESCGGG-CCGGG-CSEEEEEECSCBSS-----CCHHHHHTEEEEEEEEEE
T ss_pred             ccCCCceEEEECCccc-CCCcC-CCccEEEECCchHH-----HHHHHHHHhcCCCEEEEE
Confidence             002489999999987 33331 24678887765432     226888999999999985

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.44  E-value=7.7e-13  Score=117.54  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=82.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...+++.++.+|||+|||+|..+..+|...+ ..+|+|+|+|+.++..+  +++++    ..|.  .+++++++|+.+
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a--~~~~~----~~g~--~~v~~~~~D~~~  180 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRET--RLNLS----RLGV--LNVILFHSSSLH  180 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHH--HHHHH----HHTC--CSEEEESSCGGG
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHH--HHHHH----HhCC--CeEEEEECChhh
Confidence            345667899999999999999999999998764 34699999999744443  34443    2343  379999999998


Q ss_pred             CcccccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++..+.  .+|+|+++..|.       .++.                ...+.++++.|||||+++.+
T Consensus       181 ~~~~~~--~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s  245 (315)
T 1ixk_A          181 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS  245 (315)
T ss_dssp             GGGGCC--CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc--cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            764332  468888864431       1221                46688899999999999875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.43  E-value=3.6e-13  Score=117.26  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=82.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...+++.+|.+|||+|||+|+.+..+|...+. .+|+|+|+|+.++..  ++++++    ..|.  .+++++++|+.++
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~--~~~~~~----~~g~--~~v~~~~~D~~~~  146 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA--LKSNIN----RMGV--LNTIIINADMRKY  146 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHH--HHHHHH----HTTC--CSEEEEESCHHHH
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHH--HHHHHH----HhCC--CcEEEEeCChHhc
Confidence            445568899999999999999999999987543 569999999874443  334443    2343  3899999999887


Q ss_pred             cccc--cccceEEEEEeccccC-------------------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE--KITQASIVFVNNFAFG-------------------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~--~~~d~dvv~~~~~~~~-------------------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +...  ....+|+|+++..+..                   ......+.++++.|||||+++.+
T Consensus       147 ~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s  210 (274)
T 3ajd_A          147 KDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS  210 (274)
T ss_dssp             HHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            6410  1124688888754432                   23467788999999999999865

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.43  E-value=5e-13  Score=114.68  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=79.5

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccc-
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHR-  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~-  128 (268)
                      ...++.+|||||||+|..++.+|+..+ ..+++|+|+|+.++..++  ++++    ..|. ..+++++++|+.+. +.. 
T Consensus        76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~--~~~~----~~g~-~~~i~~~~gda~~~l~~l~  148 (247)
T 1sui_A           76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL--PVIK----KAGV-DHKIDFREGPALPVLDEMI  148 (247)
T ss_dssp             HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH--HHHH----HTTC-GGGEEEEESCHHHHHHHHH
T ss_pred             HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCCeEEEECCHHHHHHHHH
Confidence            345678999999999999999998764 346999999998555543  3333    3443 35899999999763 321 


Q ss_pred             c---cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        129 E---KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       129 ~---~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      .   ....+|+|++...  ..+....+.++++.|||||++++.+
T Consensus       149 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          149 KDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             hccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            0   0124677888643  3457788999999999999999863

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.43  E-value=7.8e-13  Score=111.22  Aligned_cols=115  Identities=13%  Similarity=0.191  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc---
Q psy17227         41 FDLISRMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATG-----CKICWGVEKADLPAKYAEMHTVFKRWMQWYGK---  110 (268)
Q Consensus        41 ~~~~~~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~---  110 (268)
                      +.....+++.+  .+.++.+|||||||+|.++..+++..+     ..+|+|+|+++.++..++  +++.+    .+.   
T Consensus        64 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~--~~~~~----~~~~~~  137 (227)
T 2pbf_A           64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSL--ENIKR----DKPELL  137 (227)
T ss_dssp             HHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHH--HHHHH----HCGGGG
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHH--HHHHH----cCcccc
Confidence            44455677777  588999999999999999999988764     235999999997555443  33332    221   


Q ss_pred             ccccEEEEEcCCCCCc----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        111 RHGEFRLVKGDFLTEE----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       111 ~~~~i~~~~gD~~~l~----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+++++++|+.+.+    ....  .+|+|+++..++.     .+.++.+.|||||++++.
T Consensus       138 ~~~~v~~~~~d~~~~~~~~~~~~~--~fD~I~~~~~~~~-----~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          138 KIDNFKIIHKNIYQVNEEEKKELG--LFDAIHVGASASE-----LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             SSTTEEEEECCGGGCCHHHHHHHC--CEEEEEECSBBSS-----CCHHHHHHEEEEEEEEEE
T ss_pred             ccCCEEEEECChHhcccccCccCC--CcCEEEECCchHH-----HHHHHHHhcCCCcEEEEE
Confidence            1248999999998754    3333  4678887766442     347888999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.43  E-value=6.1e-13  Score=111.95  Aligned_cols=110  Identities=14%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-c
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-H  127 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~  127 (268)
                      +...++.+|||||||+|..++.+++..+ ..+++|+|+|+.++..++  ++++    ..+. ..+++++++|+.+. + +
T Consensus        65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~g~-~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR--PLWR----QAEA-EHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH--HHHH----HTTC-TTTEEEEESCHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HCCC-CCeEEEEEcCHHHHHHHH
Confidence            3456788999999999999999988754 456999999997555443  3333    2343 25899999998653 2 2


Q ss_pred             cccc--cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        128 REKI--TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       128 ~~~~--~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      .+..  ..+|+|+++..  .......+.++.+.|||||++++.+
T Consensus       138 ~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             HHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhcCCCCCccEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            1110  35788888643  3456778999999999999999863

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.42  E-value=4e-13  Score=114.99  Aligned_cols=123  Identities=12%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH--hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc--------
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAA--TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH--------  112 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~--~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~--------  112 (268)
                      .+..+++.+...++.+|||+|||+|.+++.++..  .+..+|+|+|+|+.++..|+.  ++.... ..+...        
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~--~~~~~~-~~~~~~~~~~~~~~  115 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK--NLALLS-PAGLTARELERREQ  115 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH--HHHTTS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH--HHHHhh-hccccccchhhhhh
Confidence            3444555555456789999999999999999887  444469999999987766652  221100 000000        


Q ss_pred             ----------------ccEE-------------EEEcCCCCCccc---ccccceEEEEEecccc-Cc---------CHHH
Q psy17227        113 ----------------GEFR-------------LVKGDFLTEEHR---EKITQASIVFVNNFAF-GP---------TVDH  150 (268)
Q Consensus       113 ----------------~~i~-------------~~~gD~~~l~~~---~~~~d~dvv~~~~~~~-~~---------~~~~  150 (268)
                                      .+++             |+++|+.+....   .....+|+|+++..++ ..         ....
T Consensus       116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~  195 (250)
T 1o9g_A          116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG  195 (250)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred             hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence                            0155             999999874310   0112467888876432 11         2346


Q ss_pred             HHHHHHhcCCCCcEEEEe
Q psy17227        151 ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       151 ~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+++++|||||+++++
T Consensus       196 ~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          196 LLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             HHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEe
Confidence            789999999999999975

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.41  E-value=3.7e-13  Score=119.00  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=78.4

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      ..++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++  +++....  .+...++++++++|+.+++......
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~--~~~~~~~--~~~~~~~v~~~~~D~~~~~~~~~~~  168 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSK--QHFPQIS--RSLADPRATVRVGDGLAFVRQTPDN  168 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHH--HHCHHHH--GGGGCTTEEEEESCHHHHHHSSCTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHhHHhh--cccCCCcEEEEECcHHHHHHhccCC
Confidence            45678999999999999999987656667999999998666554  3332111  1122458999999998765420123


Q ss_pred             ceEEEEEecccc-CcCH----HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAF-GPTV----DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~-~~~~----~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...+ .+..    ...++++.++|||||++++.
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            578888876532 2221    57789999999999999975

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.41  E-value=1.4e-13  Score=117.89  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=70.9

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC---ccccc-
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE---EHREK-  130 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l---~~~~~-  130 (268)
                      ++.+|||||||+|.++..++...+..+|+|+|+|+.++..|+  ++++    ..+. ..+++++++|+.+.   +++.. 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~~~~~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK--KNVE----QNNL-SDLIKVVKVPQKTLLMDALKEES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEECCTTCSSTTTSTTCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHHH----HcCC-CccEEEEEcchhhhhhhhhhccc
Confidence            578999999999999999888764445999999998655554  3333    2333 23699999998762   33321 


Q ss_pred             ccceEEEEEeccccCcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|+++..++...                ....+.+++++|||||.+.+.
T Consensus       138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            02467888886544321                112356788999999998765

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.41  E-value=8.4e-13  Score=118.15  Aligned_cols=115  Identities=18%  Similarity=0.118  Sum_probs=78.6

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+.+.+. ..++.+|||+|||+|.+++.+|+. +. +|+|||+|+.++..++  ++++    ..+....+++++++|+.+
T Consensus       143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~-ga-~V~~VD~s~~al~~a~--~n~~----~~gl~~~~v~~i~~D~~~  214 (332)
T 2igt_A          143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAA-GA-EVTHVDASKKAIGWAK--ENQV----LAGLEQAPIRWICEDAMK  214 (332)
T ss_dssp             HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT-TC-EEEEECSCHHHHHHHH--HHHH----HHTCTTSCEEEECSCHHH
T ss_pred             HHHHHHHhcCCCCcEEEcccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHH--HHHH----HcCCCccceEEEECcHHH
Confidence            3444443 457789999999999999998874 66 5999999998555544  4333    234322259999999987


Q ss_pred             Ccccc--cccceEEEEEeccccC-----------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHRE--KITQASIVFVNNFAFG-----------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~--~~~d~dvv~~~~~~~~-----------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +....  ....+|+|+++...+.           .+....+.++.++|||||.|+++
T Consensus       215 ~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~  271 (332)
T 2igt_A          215 FIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  271 (332)
T ss_dssp             HHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             HHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            53210  0124677887654321           23566788889999999997764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.41  E-value=5.1e-13  Score=113.57  Aligned_cols=120  Identities=13%  Similarity=0.057  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      +.....+...+...++.+|||||||+|..+..+++..+ ..+|+|+|+++.++..++  ++++    ..+. ..++++++
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~--~~~~----~~g~-~~~v~~~~  118 (239)
T 2hnk_A           46 PEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR--KYWK----ENGL-ENKIFLKL  118 (239)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH--HHHH----HTTC-GGGEEEEE
T ss_pred             HHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCCEEEEE
Confidence            33333444444566788999999999999999998865 446999999997544443  3332    2333 23699999


Q ss_pred             cCCCCC-c-cccc------------c-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        120 GDFLTE-E-HREK------------I-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       120 gD~~~l-~-~~~~------------~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +|+.+. + +...            . ..+|+|+++..  .++....+.++.+.|||||++++.+
T Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD--KENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC--HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            998762 2 1110            0 24688887632  3456788999999999999999863

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.40  E-value=1.5e-13  Score=112.82  Aligned_cols=115  Identities=11%  Similarity=0.100  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ...+...+...+  .+.++|||||||+|-++..++...+..+++|+|+|+.|+.+++  +++.    ..|.. .++++  
T Consensus        36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar--~~~~----~~g~~-~~v~~--  104 (200)
T 3fzg_A           36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS--SIIG----KLKTT-IKYRF--  104 (200)
T ss_dssp             HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH--HHHH----HSCCS-SEEEE--
T ss_pred             HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHH----hcCCC-ccEEE--
Confidence            334445555555  5678999999999999999888776668999999998777765  3332    33432 25666  


Q ss_pred             cCCCCCcccccccceEEEEEecccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|....+.+   ..+|+|++..++| .++....+.++++.|||||.||+.
T Consensus       105 ~d~~~~~~~---~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          105 LNKESDVYK---GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             ECCHHHHTT---SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             ecccccCCC---CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            565443222   3468888877743 355666788999999999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.40  E-value=5.1e-13  Score=113.35  Aligned_cols=109  Identities=14%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-cc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HR  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~  128 (268)
                      ...++.+|||||||+|..++.+|+..+ ..+++|+|+|+.++..++  ++++    ..|. ..+++++++|+.+. + ++
T Consensus        69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~--~~~~----~~g~-~~~i~~~~~d~~~~l~~l~  141 (232)
T 3cbg_A           69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK--KYWQ----KAGV-AEKISLRLGPALATLEQLT  141 (232)
T ss_dssp             HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH--HHHH----HHTC-GGGEEEEESCHHHHHHHHH
T ss_pred             HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEEcCHHHHHHHHH
Confidence            345678999999999999999998764 346999999997555543  3332    2343 24799999998652 2 11


Q ss_pred             ccc--cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        129 EKI--TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       129 ~~~--~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ...  ..+|+|+++..  .++....+.++.+.|||||++++.+
T Consensus       142 ~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          142 QGKPLPEFDLIFIDAD--KRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             TSSSCCCEEEEEECSC--GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             hcCCCCCcCEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            111  34688887643  3556788999999999999999863

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.40  E-value=2.3e-12  Score=109.62  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             HHHHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc-cccccEEEEE
Q psy17227         42 DLISRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG-KRHGEFRLVK  119 (268)
Q Consensus        42 ~~~~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~i~~~~  119 (268)
                      ..+.++++.+++. ++.+|||||||+|.++..+++. |..+|+|||+|+.|+..++  ++..+    .. ....++++..
T Consensus        23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~--~~~~~----~~~~~~~~~~~~~   95 (232)
T 3opn_A           23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKI--RSDER----VVVMEQFNFRNAV   95 (232)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHH--HTCTT----EEEECSCCGGGCC
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHH--HhCcc----ccccccceEEEeC
Confidence            3567788888765 4679999999999999998876 7656999999999766643  11000    00 0001222222


Q ss_pred             -cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 -GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 -gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +|+...+     +  |.+.+...+.  .+...+.+++|+|||||++++.
T Consensus        96 ~~~~~~~~-----~--d~~~~D~v~~--~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A           96 LADFEQGR-----P--SFTSIDVSFI--SLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             GGGCCSCC-----C--SEEEECCSSS--CGGGTHHHHHHHSCTTCEEEEE
T ss_pred             HhHcCcCC-----C--CEEEEEEEhh--hHHHHHHHHHHhccCCCEEEEE
Confidence             2222111     1  2222222211  1367899999999999999875

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.40  E-value=7.3e-13  Score=114.06  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=76.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      .+... +.++.+|||+|||+|.+++.+++ .+. +|+|+|+|+.++..++  +++..    .+.   .++++++|+.+. 
T Consensus       113 ~l~~~-~~~~~~VLDiGcG~G~l~~~la~-~g~-~v~gvDi~~~~v~~a~--~n~~~----~~~---~v~~~~~d~~~~-  179 (254)
T 2nxc_A          113 ALARH-LRPGDKVLDLGTGSGVLAIAAEK-LGG-KALGVDIDPMVLPQAE--ANAKR----NGV---RPRFLEGSLEAA-  179 (254)
T ss_dssp             HHHHH-CCTTCEEEEETCTTSHHHHHHHH-TTC-EEEEEESCGGGHHHHH--HHHHH----TTC---CCEEEESCHHHH-
T ss_pred             HHHHh-cCCCCEEEEecCCCcHHHHHHHH-hCC-eEEEEECCHHHHHHHH--HHHHH----cCC---cEEEEECChhhc-
Confidence            34443 67889999999999999998776 466 6999999998665554  33331    222   289999998762 


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++.  .+|+|+++...+  .....+.++.+.|||||+++++
T Consensus       180 ~~~~--~fD~Vv~n~~~~--~~~~~l~~~~~~LkpgG~lils  217 (254)
T 2nxc_A          180 LPFG--PFDLLVANLYAE--LHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             GGGC--CEEEEEEECCHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCC--CCCEEEECCcHH--HHHHHHHHHHHHcCCCCEEEEE
Confidence            3232  468888874432  2567789999999999999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.38  E-value=4e-13  Score=121.13  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=80.6

Q ss_pred             HHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+++.+  ++.++.+|||||||+|.++..+++.++..+++++|+ +.++..++              ...+++++.+|+.
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~  246 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT--------------GNENLNFVGGDMF  246 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC--------------CCSSEEEEECCTT
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc--------------cCCCcEEEeCccC
Confidence            355555  456778999999999999999999887667999999 44222111              1246999999998


Q ss_pred             CCcccccccceEEEEEecc-ccCcCHH--HHHHHHHhcCCC---CcEEEEeCCCCC
Q psy17227        124 TEEHREKITQASIVFVNNF-AFGPTVD--HALKERFQDLKD---GARIVSSKSFCP  173 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~~~~~--~~l~e~~r~Lkp---GG~~i~~~~~~~  173 (268)
                      + +++    ++|+|++..+ +++++..  ..+++++++|||   ||++++.+...+
T Consensus       247 ~-~~~----~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          247 K-SIP----SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             T-CCC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             C-CCC----CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            8 654    2567777666 4566655  889999999999   999998755443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.38  E-value=3.3e-13  Score=117.78  Aligned_cols=115  Identities=17%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE--EcC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV--KGD  121 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~--~gD  121 (268)
                      +..+++...++++.+|||||||+|.++..+++.  .. |+|||+|+ |...++  +...   .... ...++.|+  ++|
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~-V~gVD~s~-m~~~a~--~~~~---~~~~-~~~~v~~~~~~~D  140 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PN-VREVKAYT-LGTSGH--EKPR---LVET-FGWNLITFKSKVD  140 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TT-EEEEEEEC-CCCTTS--CCCC---CCCC-TTGGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CC-EEEEECch-hhhhhh--hchh---hhhh-cCCCeEEEeccCc
Confidence            345666656778999999999999999988876  33 99999998 421111  0000   0000 01178999  999


Q ss_pred             CCCCcccccccceEEEEEeccccCcCH----H---HHHHHHHhcCCCCc--EEEEeCCCCC
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTV----D---HALKERFQDLKDGA--RIVSSKSFCP  173 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~----~---~~l~e~~r~LkpGG--~~i~~~~~~~  173 (268)
                      +.++|  +.  .+|+|+++...+....    .   .++.++.++|||||  .|++. .+.|
T Consensus       141 ~~~l~--~~--~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~-~~~~  196 (276)
T 2wa2_A          141 VTKME--PF--QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK-VLNP  196 (276)
T ss_dssp             GGGCC--CC--CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE-ESCC
T ss_pred             HhhCC--CC--CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE-eCCC
Confidence            99876  33  3567777644222221    1   36888899999999  88874 3443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.37  E-value=2e-12  Score=109.56  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +++|.+|||||||+|.+++.+|+..+..+|+|+|+++.+...|+  ++++    ..|. ..+++++++|..+...+++  
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~--~N~~----~~gl-~~~I~~~~gD~l~~~~~~~--   89 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL--KNVS----EHGL-TSKIDVRLANGLSAFEEAD--   89 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH--HHHH----HTTC-TTTEEEEECSGGGGCCGGG--
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEECchhhcccccc--
Confidence            56789999999999999999988755667999999998555544  4443    3454 2479999999987654332  


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++.+. -..-....+.+..+.|+++|+||+.
T Consensus        90 ~~D~IviaGm-Gg~lI~~IL~~~~~~l~~~~~lIlq  124 (230)
T 3lec_A           90 NIDTITICGM-GGRLIADILNNDIDKLQHVKTLVLQ  124 (230)
T ss_dssp             CCCEEEEEEE-CHHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred             ccCEEEEeCC-chHHHHHHHHHHHHHhCcCCEEEEE
Confidence            2455554322 1122455567777899999999986

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.37  E-value=5.1e-13  Score=115.94  Aligned_cols=112  Identities=13%  Similarity=0.012  Sum_probs=75.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE--Ec
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV--KG  120 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~--~g  120 (268)
                      .+..+++...++++++|||||||+|.++..+++.  .. |+|||+++ |...+.  +. .  ..... ...++.++  ++
T Consensus        62 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~-V~gvD~s~-m~~~a~--~~-~--~~~~~-~~~~v~~~~~~~  131 (265)
T 2oxt_A           62 KLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PH-VMDVRAYT-LGVGGH--EV-P--RITES-YGWNIVKFKSRV  131 (265)
T ss_dssp             HHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TT-EEEEEEEC-CCCSSC--CC-C--CCCCB-TTGGGEEEECSC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--Cc-EEEEECch-hhhhhh--hh-h--hhhhc-cCCCeEEEeccc
Confidence            3456666666788999999999999999988876  33 99999998 321111  00 0  00000 01178999  99


Q ss_pred             CCCCCcccccccceEEEEEeccccCcCH----H---HHHHHHHhcCCCCc--EEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPTV----D---HALKERFQDLKDGA--RIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~----~---~~l~e~~r~LkpGG--~~i~~  168 (268)
                      |+.++|  +.  .+|+|+++...+....    .   .++.++.++|||||  .|++.
T Consensus       132 D~~~l~--~~--~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k  184 (265)
T 2oxt_A          132 DIHTLP--VE--RTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVK  184 (265)
T ss_dssp             CTTTSC--CC--CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CHhHCC--CC--CCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            999977  33  3567877644222221    1   36888899999999  88874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.37  E-value=9.8e-12  Score=112.83  Aligned_cols=103  Identities=9%  Similarity=-0.018  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc-cc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH-RE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~-~~  129 (268)
                      +..++.+||||| |+|.+++.++...+..+|+|+|+|+.++..++  ++++    ..|.  .+++++++|+.+ +|. .+
T Consensus       169 ~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~--~~~~----~~g~--~~v~~~~~D~~~~l~~~~~  239 (373)
T 2qm3_A          169 GDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIE--KAAN----EIGY--EDIEIFTFDLRKPLPDYAL  239 (373)
T ss_dssp             TCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHH--HHHH----HHTC--CCEEEECCCTTSCCCTTTS
T ss_pred             CCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CCEEEEEChhhhhchhhcc
Confidence            345788999999 99999999887644356999999998655544  4433    2343  289999999998 663 22


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARI  165 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~  165 (268)
                      +  .+|+|+++..++.......+.+++++|||||++
T Consensus       240 ~--~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          240 H--KFDTFITDPPETLEAIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             S--CBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCE
T ss_pred             C--CccEEEECCCCchHHHHHHHHHHHHHcccCCeE
Confidence            2  467888887654444567789999999999954

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=3.3e-12  Score=111.90  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+..+.++++.+++.++++|||||||+|.++..++.. +. +|+|+|+|+.++..++  +++.    ..+. ..++++++
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~-~v~~vD~~~~~~~~a~--~~~~----~~~~-~~~v~~~~   83 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AK-KVVACELDPRLVAELH--KRVQ----GTPV-ASKLQVLV   83 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SS-EEEEEESCHHHHHHHH--HHHT----TSTT-GGGEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CC-EEEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEE
Confidence            4567788999999999999999999999999999886 44 4999999997554443  2221    1121 24899999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcC--HHHHH--------------HHHH--hcCCCCcEEEE
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPT--VDHAL--------------KERF--QDLKDGARIVS  167 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~--~~~~l--------------~e~~--r~LkpGG~~i~  167 (268)
                      +|+.+++++    .+|+|++|..+++..  ....+              +|+.  ++|||||.++.
T Consensus        84 ~D~~~~~~~----~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           84 GDVLKTDLP----FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             SCTTTSCCC----CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             cceecccch----hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            999987754    346788876554432  12222              3443  58999998754

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.36  E-value=2.8e-12  Score=109.57  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.+|.+|||||||+|.+++.+|+..+..+|+|+|+++.++..|+  ++++    ..|.. .+++++++|..+...++.. 
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~--~N~~----~~gl~-~~I~v~~gD~l~~~~~~~~-   90 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ--KQVR----SSGLT-EQIDVRKGNGLAVIEKKDA-   90 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH--HHHH----HTTCT-TTEEEEECSGGGGCCGGGC-
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-ceEEEEecchhhccCcccc-
Confidence            56789999999999999999988755667999999998555544  4443    34442 4799999999875543322 


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +|+|++... -..-....+.+..+.|+++++||+.
T Consensus        91 -~D~Iviagm-Gg~lI~~IL~~~~~~L~~~~~lIlq  124 (244)
T 3gnl_A           91 -IDTIVIAGM-GGTLIRTILEEGAAKLAGVTKLILQ  124 (244)
T ss_dssp             -CCEEEEEEE-CHHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred             -ccEEEEeCC-chHHHHHHHHHHHHHhCCCCEEEEE
Confidence             455554322 1122455567778899999999986

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.36  E-value=1.1e-12  Score=117.55  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-ccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~~  129 (268)
                      ...++.+|||||||+|.+++.+++..+..+|++||+|+.++.+|+  +++.+.  ..+....+++++++|+.+. + +.+
T Consensus       117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar--~~~~~~--~~gl~~~rv~~~~~D~~~~l~~~~~  192 (334)
T 1xj5_A          117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSK--QFFPDV--AIGYEDPRVNLVIGDGVAFLKNAAE  192 (334)
T ss_dssp             TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCHHH--HGGGGSTTEEEEESCHHHHHHTSCT
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHHHhh--ccccCCCcEEEEECCHHHHHHhccC
Confidence            345678999999999999999988666667999999998666654  333221  0133335899999998764 2 122


Q ss_pred             cccceEEEEEeccc--cCcC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFA--FGPT---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~--~~~~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..+|+|+++...  +..+   ....++++.++|||||++++.
T Consensus       193 --~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          193 --GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             --TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence              247888887552  2122   367889999999999999984

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.36  E-value=5.3e-12  Score=110.23  Aligned_cols=117  Identities=13%  Similarity=0.112  Sum_probs=76.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC-CCChhHHHHHHHHHHHHH-HHhccc---cccEEEEEcC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK-ADLPAKYAEMHTVFKRWM-QWYGKR---HGEFRLVKGD  121 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~-s~~~~~~a~~~~~~~~~~-~~~~~~---~~~i~~~~gD  121 (268)
                      +.......++.+|||||||+|.+++.+++ .+..+|+|+|+ |+.++..++  +++.... +..+..   ..+++++..|
T Consensus        71 l~~~~~~~~~~~vLDlG~G~G~~~~~~a~-~~~~~v~~~D~s~~~~~~~a~--~n~~~N~~~~~~~~~~~~~~v~~~~~~  147 (281)
T 3bzb_A           71 LCWQPELIAGKTVCELGAGAGLVSIVAFL-AGADQVVATDYPDPEILNSLE--SNIREHTANSCSSETVKRASPKVVPYR  147 (281)
T ss_dssp             HHHCGGGTTTCEEEETTCTTSHHHHHHHH-TTCSEEEEEECSCHHHHHHHH--HHHHTTCC----------CCCEEEECC
T ss_pred             HHhcchhcCCCeEEEecccccHHHHHHHH-cCCCEEEEEeCCCHHHHHHHH--HHHHHhhhhhcccccCCCCCeEEEEec
Confidence            44444556888999999999999998776 46656999999 887555544  3331000 111211   1368888777


Q ss_pred             CCCCc--c----cccccceEEEEE-eccccCcCHHHHHHHHHhcCC---C--CcEEEEe
Q psy17227        122 FLTEE--H----REKITQASIVFV-NNFAFGPTVDHALKERFQDLK---D--GARIVSS  168 (268)
Q Consensus       122 ~~~l~--~----~~~~~d~dvv~~-~~~~~~~~~~~~l~e~~r~Lk---p--GG~~i~~  168 (268)
                      ..+..  +    .+.  .+|+|++ +.++|.++....+..+.++||   |  ||++++.
T Consensus       148 ~~~~~~~~~~~~~~~--~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          148 WGDSPDSLQRCTGLQ--RFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             TTSCTHHHHHHHSCS--SBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             CCCccHHHHhhccCC--CCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            65421  1    123  3566666 444566778889999999999   9  9987653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.35  E-value=2.1e-12  Score=109.99  Aligned_cols=108  Identities=10%  Similarity=0.053  Sum_probs=78.9

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-cc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HR  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~  128 (268)
                      ...++.+|||||||+|..++.+|+..+ ..+++++|+|+.+...++  ++++    ..|. ..+++++++|+.+. + +.
T Consensus        67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~--~~~~----~~g~-~~~i~~~~gda~~~l~~l~  139 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL--PFIR----KAGV-EHKINFIESDAMLALDNLL  139 (237)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH--HHHH----HTTC-GGGEEEEESCHHHHHHHHH
T ss_pred             HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEEcCHHHHHHHHH
Confidence            345678999999999999999998765 456999999997555443  4333    3444 34799999999763 3 21


Q ss_pred             cc---ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EK---ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~---~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..   ...+|+|++...  ..+....+.++.+.|||||++++.
T Consensus       140 ~~~~~~~~fD~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          140 QGQESEGSYDFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             HSTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccCCCCCcCEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence            00   135788988643  345677889999999999999985

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.35  E-value=1.9e-12  Score=114.54  Aligned_cols=107  Identities=15%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC----CCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK----ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..++++..++++.+|||||||+|.++..+|+. + . |+|||+    ++.++..+.+          .....++++|+++
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~-~-V~gvD~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~  138 (305)
T 2p41_A           72 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-K-N-VREVKGLTKGGPGHEEPIPM----------STYGWNLVRLQSG  138 (305)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-T-T-EEEEEEECCCSTTSCCCCCC----------CSTTGGGEEEECS
T ss_pred             HHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-C-C-EEEEeccccCchhHHHHHHh----------hhcCCCCeEEEec
Confidence            34555544678999999999999999988876 3 3 999999    5532211100          0011247999999


Q ss_pred             -CCCCCcccccccceEEEEEecccc----CcCHH---HHHHHHHhcCCCCcEEEEe
Q psy17227        121 -DFLTEEHREKITQASIVFVNNFAF----GPTVD---HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 -D~~~l~~~~~~~d~dvv~~~~~~~----~~~~~---~~l~e~~r~LkpGG~~i~~  168 (268)
                       |+.++|.  .  .+|+|+++..++    ..+..   .++.++.++|||||.|++.
T Consensus       139 ~D~~~l~~--~--~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          139 VDVFFIPP--E--RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCTTTSCC--C--CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cccccCCc--C--CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence             9988762  2  457788865432    12222   4688888999999999874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.34  E-value=6.3e-12  Score=109.07  Aligned_cols=118  Identities=14%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             HHHHHHHHcCCC-CCCEEEEEcCCC--CHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQINAT-PDDVFVDLGSGV--GQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~~~-~~~~vLDiGCG~--G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ++.+.+..+... ...+|||||||+  ++.+..+++. .+..+|+|||.|+.|+..++  +.+.      +....+++|+
T Consensus        65 fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar--~~l~------~~~~~~~~~v  136 (277)
T 3giw_A           65 WMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQ--GLLA------STPEGRTAYV  136 (277)
T ss_dssp             HHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTH--HHHC------CCSSSEEEEE
T ss_pred             HHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHH--HHhc------cCCCCcEEEE
Confidence            344555555422 336899999997  3344445543 45557999999997544443  2221      1112479999


Q ss_pred             EcCCCCCcc----c--ccccce---EEEEEeccc-cCcC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEH----R--EKITQA---SIVFVNNFA-FGPT---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~----~--~~~~d~---dvv~~~~~~-~~~~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+++.    +  ...+|+   .+|++++++ |.++   +...+.++++.|+|||.|+++
T Consensus       137 ~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls  199 (277)
T 3giw_A          137 EADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS  199 (277)
T ss_dssp             ECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred             EecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence            999998631    1  222331   145666664 5555   567899999999999999986

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.34  E-value=9.3e-12  Score=115.75  Aligned_cols=113  Identities=16%  Similarity=0.189  Sum_probs=82.5

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...+++.++++|||+|||+|+.+..++...+. ..|+|+|+|+.++..  ++++++    ..|.  .+++++++|+.+
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~--~~~~~~----~~g~--~~v~~~~~D~~~  321 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKR--LKDFVK----RMGI--KIVKPLVKDARK  321 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH--HHHHHH----HTTC--CSEEEECSCTTC
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHH--HHHHHH----HcCC--CcEEEEEcChhh
Confidence            3455678999999999999999999999987654 569999999874433  334443    2343  479999999998


Q ss_pred             Cc--ccccccceEEEEEeccc-------cCcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HREKITQASIVFVNNFA-------FGPTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~~~~d~dvv~~~~~~-------~~~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++  +++.  .+|+|+++..|       +.|+.                ...+.++.+.|||||+++.+
T Consensus       322 ~~~~~~~~--~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~  388 (450)
T 2yxl_A          322 APEIIGEE--VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT  388 (450)
T ss_dssp             CSSSSCSS--CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cchhhccC--CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            76  3322  46788875433       12332                45688899999999999865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.33  E-value=5.3e-12  Score=104.14  Aligned_cols=96  Identities=10%  Similarity=0.006  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      +..++.+|||+|||+|.++..++.. +..+|+|+|+|+.++..++  ++           ..+++++++|+.++|     
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~--~~-----------~~~~~~~~~d~~~~~-----  108 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAK--RN-----------CGGVNFMVADVSEIS-----  108 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHH--HH-----------CTTSEEEECCGGGCC-----
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHH--Hh-----------cCCCEEEECcHHHCC-----
Confidence            5668899999999999999988876 6656999999997544443  11           127899999998875     


Q ss_pred             cceEEEEEeccccCc-C--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGP-T--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~-~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|+++..+|.. +  ....+.++.+++  |+.+++.
T Consensus       109 ~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          109 GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            246888888765432 2  346788888888  5544443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.33  E-value=2.3e-12  Score=112.32  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCCCH----HHHHHHHHhC----CcEEEEEeCCCChhHHHHHHH------------HHHHHH---HH--hc
Q psy17227         55 PDDVFVDLGSGVGQ----VVLQVAAATG----CKICWGVEKADLPAKYAEMHT------------VFKRWM---QW--YG  109 (268)
Q Consensus        55 ~~~~vLDiGCG~G~----~~~~la~~~~----~~~v~GiD~s~~~~~~a~~~~------------~~~~~~---~~--~~  109 (268)
                      ++.+|+|+|||||.    +++.++...+    ..+|+|+|+|+.|+..|+...            ..+++.   ..  .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45789999999998    6666666544    236999999998666655210            000000   00  00


Q ss_pred             ---cc---cccEEEEEcCCCCCcccccccceEEEEEeccc-cCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 ---KR---HGEFRLVKGDFLTEEHREKITQASIVFVNNFA-FGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 ---~~---~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                         ..   ..+|+|.++|+.+.|++. ...+|+|+|.+++ |.++  ..+.+.++++.|||||.+++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~-~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV-PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC-CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCc-CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence               00   036999999999866541 1257889987663 3333  367789999999999999984

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.33  E-value=5.4e-12  Score=106.68  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~  131 (268)
                      +.+|.+|||||||+|.+++.+|+..+..+|+|+|+++.++..|+  ++++    ..|.. .+++++++|..+ ++..+  
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~--~N~~----~~gl~-~~i~~~~~d~l~~l~~~~--   83 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV--KNVE----AHGLK-EKIQVRLANGLAAFEETD--   83 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH--HHHH----HTTCT-TTEEEEECSGGGGCCGGG--
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-ceEEEEECchhhhcccCc--
Confidence            46788999999999999999998766667999999998555544  4443    34542 479999999864 33211  


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+|+|++... -..-....+.+..+.|+|||++|+.
T Consensus        84 -~~D~IviaG~-Gg~~i~~Il~~~~~~L~~~~~lVlq  118 (225)
T 3kr9_A           84 -QVSVITIAGM-GGRLIARILEEGLGKLANVERLILQ  118 (225)
T ss_dssp             -CCCEEEEEEE-CHHHHHHHHHHTGGGCTTCCEEEEE
T ss_pred             -CCCEEEEcCC-ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence             2555655432 1122456677778899999999986

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.33  E-value=5.4e-12  Score=117.16  Aligned_cols=120  Identities=23%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-------------CCcEEEEEeCCCChhHHHHHHHHHHHHHH
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-------------GCKICWGVEKADLPAKYAEMHTVFKRWMQ  106 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-------------~~~~v~GiD~s~~~~~~a~~~~~~~~~~~  106 (268)
                      ....+..+++.+...++.+|||.|||+|+++..+++..             ....++|+|+++.+..+|+++-.      
T Consensus       156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~------  229 (445)
T 2okc_A          156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY------  229 (445)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH------
T ss_pred             cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH------
Confidence            34556667777888889999999999999999888753             12239999999987777764332      


Q ss_pred             HhccccccEEEEEcCCCCCcccccccceEEEEEeccccCc---C---------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        107 WYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP---T---------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       107 ~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~---~---------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..|....++.+.++|....+...   .+|+|++|..+...   +               ....+.++++.|||||++++.
T Consensus       230 l~g~~~~~~~i~~gD~l~~~~~~---~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V  306 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKEPST---LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV  306 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSCCSS---CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhCCCcCCCCEeeCCCCCCcccC---CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence            23332126789999998766432   57889988654221   1               135688999999999998765

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.33  E-value=1.1e-11  Score=112.61  Aligned_cols=111  Identities=15%  Similarity=0.072  Sum_probs=79.3

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ..+.....++..+ +.++.+|||+|||+|.+++.+|......+|+|+|+|+.++..|+  ++++    ..|. ..+++++
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~--~n~~----~~gl-~~~i~~~  273 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE--MNAL----AAGV-LDKIKFI  273 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH--HHHH----HTTC-GGGCEEE
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH--HHHH----HcCC-CCceEEE
Confidence            4455566677777 88999999999999999999888654335999999998666554  3333    2343 2489999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccC-----cCH----HHHHHHHHhcC
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFG-----PTV----DHALKERFQDL  159 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~~~----~~~l~e~~r~L  159 (268)
                      ++|+.++++++.  .+|+|++|..+..     ...    ...+.++.++|
T Consensus       274 ~~D~~~~~~~~~--~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          274 QGDATQLSQYVD--SVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             ECCGGGGGGTCS--CEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             ECChhhCCcccC--CcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            999999886543  4678888765321     112    34556777888

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.32  E-value=8.4e-12  Score=109.44  Aligned_cols=128  Identities=11%  Similarity=0.072  Sum_probs=83.5

Q ss_pred             HHHhhcC--CccccccCCCCCCCCcccCcHH--HHHHHHHH-----cCCCCCCEEEEEcC------CCCHHHHHHHHHhC
Q psy17227         14 TYNQSVT--EPEKLNVYQPFSPFVYGETSFD--LISRMIDQ-----INATPDDVFVDLGS------GVGQVVLQVAAATG   78 (268)
Q Consensus        14 ~y~~~~~--~~~~~~~y~~~~~~~~g~~~~~--~~~~ll~~-----l~~~~~~~vLDiGC------G~G~~~~~la~~~~   78 (268)
                      +|.....  ++-.|..|..+.. .|......  ....++..     +.++++++||||||      |+|.  ..+++..+
T Consensus        14 ~~~~~~~~~e~~~~~~Y~~~~~-~p~g~~~n~~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~   90 (290)
T 2xyq_A           14 LYKMQRMLLEKCDLQNYGENAV-IPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP   90 (290)
T ss_dssp             HHHTCCCCCCCCCCCSCCCCTT-SCTTCCHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC
T ss_pred             HHhhcccCccHhHHHhhhcCCc-CCCcccccHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC
Confidence            5555544  3434556665553 33333222  12234333     46889999999999      4476  44566666


Q ss_pred             -CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE-EEcCCCCCcccccccceEEEEEeccccC-----------
Q psy17227         79 -CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL-VKGDFLTEEHREKITQASIVFVNNFAFG-----------  145 (268)
Q Consensus        79 -~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~-~~gD~~~l~~~~~~~d~dvv~~~~~~~~-----------  145 (268)
                       ..+|+|+|+|+.                     ..+++| +++|+.++++.   ..+|+|+++...+.           
T Consensus        91 ~~~~V~gvDis~~---------------------v~~v~~~i~gD~~~~~~~---~~fD~Vvsn~~~~~~g~~~~d~~~~  146 (290)
T 2xyq_A           91 TGTLLVDSDLNDF---------------------VSDADSTLIGDCATVHTA---NKWDLIISDMYDPRTKHVTKENDSK  146 (290)
T ss_dssp             TTCEEEEEESSCC---------------------BCSSSEEEESCGGGCCCS---SCEEEEEECCCCCC---CCSCCCCC
T ss_pred             CCCEEEEEECCCC---------------------CCCCEEEEECccccCCcc---CcccEEEEcCCccccccccccccch
Confidence             346999999984                     026778 99999987754   24788888743221           


Q ss_pred             cC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        146 PT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       146 ~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ ....++++.++|||||+|++.
T Consensus       147 ~~l~~~~l~~a~r~LkpGG~~v~~  170 (290)
T 2xyq_A          147 EGFFTYLCGFIKQKLALGGSIAVK  170 (290)
T ss_dssp             CTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            11 346789999999999999985

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.32  E-value=1.7e-11  Score=113.30  Aligned_cols=115  Identities=15%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ....+...++..++.+|||+|||+|+.+..++...+...|+|+|+|+.++..++  +++++    .|.   +++++++|+
T Consensus       234 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~--~~~~~----~g~---~~~~~~~D~  304 (429)
T 1sqg_A          234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY--DNLKR----LGM---KATVKQGDG  304 (429)
T ss_dssp             HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH--HHHHH----TTC---CCEEEECCT
T ss_pred             HHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HHHHH----cCC---CeEEEeCch
Confidence            344466677889999999999999999999998765456999999998555443  44432    332   579999999


Q ss_pred             CCCc--ccccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEE--HREKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~--~~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++  +++.  .+|+|+++..|.       .++.                ...+.++.+.|||||+++.+
T Consensus       305 ~~~~~~~~~~--~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys  373 (429)
T 1sqg_A          305 RYPSQWCGEQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA  373 (429)
T ss_dssp             TCTHHHHTTC--CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhchhhcccC--CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9876  3322  467888765432       2332                35678889999999999865

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.31  E-value=7.9e-12  Score=108.97  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=79.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++.+.  +++|.+|||+|||+|.+++.+|+. |..+|+++|+||.++..++  ++++    .++. .++++++++|+.+
T Consensus       117 ~ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~--~N~~----~N~v-~~~v~~~~~D~~~  186 (278)
T 3k6r_A          117 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLV--ENIH----LNKV-EDRMSAYNMDNRD  186 (278)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHH--HHHH----HTTC-TTTEEEECSCTTT
T ss_pred             HHHHHh--cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEeCcHHH
Confidence            345555  578999999999999999998875 5556999999997555443  4443    3444 3579999999998


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++..   ..+|.|+++..   +.....+....+.|||||.+.++
T Consensus       187 ~~~~---~~~D~Vi~~~p---~~~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          187 FPGE---NIADRILMGYV---VRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CCCC---SCEEEEEECCC---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             hccc---cCCCEEEECCC---CcHHHHHHHHHHHcCCCCEEEEE
Confidence            7642   24678887744   33445677788999999998765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.30  E-value=2.7e-12  Score=113.52  Aligned_cols=110  Identities=12%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~  131 (268)
                      ..++.+|||||||+|.+++.+++..+..+|++||+|+.++.+++  +++....  .+...++++++++|+.+ ++..+  
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar--~~~~~~~--~~~~~~rv~v~~~Da~~~l~~~~--  166 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSK--KFLPGMA--IGYSSSKLTLHVGDGFEFMKQNQ--  166 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCHHHH--GGGGCTTEEEEESCHHHHHHTCS--
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHhHHhh--cccCCCcEEEEECcHHHHHhhCC--
Confidence            45678999999999999999987656667999999998666554  3332210  12224689999999876 33222  


Q ss_pred             cceEEEEEeccccC-c----CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFG-P----TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~-~----~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|+++...+. +    .....++++.+.|||||++++.
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  208 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  208 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence            35788998765322 1    1245689999999999999975

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.30  E-value=2.3e-12  Score=112.66  Aligned_cols=108  Identities=14%  Similarity=0.140  Sum_probs=76.5

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-------ccccEEEEEcCCCCC
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-------RHGEFRLVKGDFLTE  125 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-------~~~~i~~~~gD~~~l  125 (268)
                      ..++.+|||||||+|.+++.+++. +..+|++||+++.++.+++  +++ +.  ..+.       ..++++++++|+.+.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar--~~~-~~--~~~l~~~~~~~~~~~v~~~~~D~~~~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSK--DLI-KI--DNGLLEAMLNGKHEKAKLTIGDGFEF  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHH--HHT-CT--TTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHH--HHH-hh--ccccccccccCCCCcEEEEECchHHH
Confidence            346689999999999999998887 7767999999998665554  322 10  0011       235899999998653


Q ss_pred             cccccccceEEEEEeccccC-c--C--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFG-P--T--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~-~--~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+  ..+|+|+++...+. +  .  ....++++.+.|||||++++.
T Consensus       147 l~~~--~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          147 IKNN--RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             HHHC--CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccc--CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            2112  35788988766322 1  1  256789999999999999975

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.30  E-value=6.1e-12  Score=115.02  Aligned_cols=115  Identities=20%  Similarity=0.261  Sum_probs=81.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+ .+++.+|||+|||+|.+++.+|.. |+.+|+|+|+|+.++..++  ++++    ..+.. .+++|+++|+.+
T Consensus       208 ~~~~~~~-~~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~--~n~~----~n~~~-~~v~~~~~d~~~  278 (396)
T 2as0_A          208 RLALEKW-VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAK--ENAK----LNGVE-DRMKFIVGSAFE  278 (396)
T ss_dssp             HHHHGGG-CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHH--HHHH----HTTCG-GGEEEEESCHHH
T ss_pred             HHHHHHH-hhCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH--HHHH----HcCCC-ccceEEECCHHH
Confidence            4445444 348899999999999999998875 6767999999997555543  4433    23432 389999999987


Q ss_pred             Cccc--ccccceEEEEEeccccC----------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHR--EKITQASIVFVNNFAFG----------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~--~~~~d~dvv~~~~~~~~----------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +...  .....+|+|+++...+.          .+....+.++.+.|||||.++++
T Consensus       279 ~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  334 (396)
T 2as0_A          279 EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC  334 (396)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5321  11235788988765443          23456678889999999998865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.30  E-value=3.5e-12  Score=111.18  Aligned_cols=109  Identities=14%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~  132 (268)
                      .++.+|||||||+|.+++.+++..+..+|++||+++.++.+++  +++....  .+...++++++++|+.+. +..+  .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar--~~~~~~~--~~~~~~rv~v~~~D~~~~l~~~~--~  147 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSK--KFLPSIA--GKLDDPRVDVQVDDGFMHIAKSE--N  147 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHH--HHCHHHH--TTTTSTTEEEEESCSHHHHHTCC--S
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHH--HHhHhhc--cccCCCceEEEECcHHHHHhhCC--C
Confidence            3567999999999999999887657667999999998666654  3332210  122346899999998763 3222  3


Q ss_pred             ceEEEEEeccccC-cC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFG-PT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~-~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...+. +.    ....++++.+.|||||++++.
T Consensus       148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            5788998765322 11    257889999999999999985

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.30  E-value=2.6e-12  Score=114.07  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc-cccccEEEEEcCCCCC-cccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG-KRHGEFRLVKGDFLTE-EHREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~i~~~~gD~~~l-~~~~~~  131 (268)
                      .++.+|||||||+|.+++.+++..+..+|++||+|+.++..++  +++.+.  ..+ ...++++++++|+.+. +..+  
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar--~~~~~~--~~~~~~~~~v~~~~~D~~~~l~~~~--  149 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAK--RHMPEW--HQGAFDDPRAVLVIDDARAYLERTE--  149 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHH--HHCHHH--HTTGGGCTTEEEEESCHHHHHHHCC--
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHhHhh--ccccccCCceEEEEchHHHHHHhcC--
Confidence            4568999999999999999988656667999999998665554  333210  011 1235899999999773 3322  


Q ss_pred             cceEEEEEeccccC---c---C--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFG---P---T--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~---~---~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|+++...+.   .   .  ....++++.+.|||||++++.
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            35788988866433   1   1  367789999999999999975

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.30  E-value=9.4e-12  Score=113.48  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=78.8

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+- .++.+|||+|||+|.+++.+|+. ++.+|+|+|+|+.++..|+  ++++    ..+....+++|+++|+.+
T Consensus       203 ~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~--~N~~----~n~~~~~~v~~~~~D~~~  274 (385)
T 2b78_A          203 RNELINGS-AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSL--AHFE----ANHLDMANHQLVVMDVFD  274 (385)
T ss_dssp             HHHHHHTT-TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHH--HHHH----HTTCCCTTEEEEESCHHH
T ss_pred             HHHHHHHh-cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHH--HHHH----HcCCCccceEEEECCHHH
Confidence            34444331 67889999999999999998874 6656999999998666554  4443    234321289999999977


Q ss_pred             C-cc-cccccceEEEEEecccc------CcCHHH----HHHHHHhcCCCCcEEEEe
Q psy17227        125 E-EH-REKITQASIVFVNNFAF------GPTVDH----ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l-~~-~~~~~d~dvv~~~~~~~------~~~~~~----~l~e~~r~LkpGG~~i~~  168 (268)
                      . +. ......+|+|+++...+      ..+...    .+.++.+.|||||.++++
T Consensus       275 ~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~  330 (385)
T 2b78_A          275 YFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS  330 (385)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3 31 11112578898875542      233333    456667999999999876

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.30  E-value=4.2e-12  Score=111.84  Aligned_cols=109  Identities=11%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~  132 (268)
                      .++.+|||||||+|.+++.+++..+..+|+++|+|+.++.+++  +++.+..  .+...++++++++|+.+. +..+  .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~--~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~--~  162 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAAR--KYLKQTS--CGFDDPRAEIVIANGAEYVRKFK--N  162 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHH--HHCHHHH--GGGGCTTEEEEESCHHHHGGGCS--S
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHhHhhc--cccCCCceEEEECcHHHHHhhCC--C
Confidence            4557999999999999999888656667999999998665554  3332210  122235899999998763 3222  3


Q ss_pred             ceEEEEEeccccCc------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGP------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...++.      .....++++.+.|||||++++.
T Consensus       163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            47888887543211      1267789999999999999985

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.29  E-value=3.4e-11  Score=99.62  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=72.1

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ...+..++.+|||+|||+|.++..+++. +..+|+|+|+|+.++..++  ++++    ..+.   +++++++|+.+++  
T Consensus        43 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~--~~~~----~~~~---~~~~~~~d~~~~~--  110 (207)
T 1wy7_A           43 YSLGDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLI--ENLG----EFKG---KFKVFIGDVSEFN--  110 (207)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHH--HHTG----GGTT---SEEEEESCGGGCC--
T ss_pred             HHcCCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH--HHHH----HcCC---CEEEEECchHHcC--
Confidence            3335668899999999999999998875 5556999999997544443  3222    1221   7999999998865  


Q ss_pred             ccccceEEEEEeccccCc---CHHHHHHHHHhcCCCCcEEEE
Q psy17227        129 EKITQASIVFVNNFAFGP---TVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       129 ~~~~d~dvv~~~~~~~~~---~~~~~l~e~~r~LkpGG~~i~  167 (268)
                       .  .+|+|+++..++..   .....+.++.+.+  |+.+++
T Consensus       111 -~--~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          111 -S--RVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             -C--CCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred             -C--CCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence             2  45788888765432   2456678888888  665554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.28  E-value=1.8e-11  Score=109.78  Aligned_cols=110  Identities=14%  Similarity=0.152  Sum_probs=78.1

Q ss_pred             HHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCC-----cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         47 MIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGC-----KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        47 ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~-----~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ++..+ +..++.+|||+|||+|.++..+++..+.     ..++|+|+++.+..+|+++.  .    ..|.   ++.++++
T Consensus       121 ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~--~----~~g~---~~~i~~~  191 (344)
T 2f8l_A          121 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA--D----LQRQ---KMTLLHQ  191 (344)
T ss_dssp             HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH--H----HHTC---CCEEEES
T ss_pred             HHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH--H----hCCC---CceEEEC
Confidence            44443 4567889999999999999998887642     45999999998777766432  2    1232   6889999


Q ss_pred             CCCCCcccccccceEEEEEeccc-cCcCH------------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFA-FGPTV------------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~-~~~~~------------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |...... .  ..+|+|++|..+ +.+..                  ...+.++.+.|||||++++.
T Consensus       192 D~l~~~~-~--~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          192 DGLANLL-V--DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             CTTSCCC-C--CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCccc-c--CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            9876332 1  357889988653 22111                  14578889999999998865

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=4.9e-12  Score=112.10  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=74.7

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      .+|||||||+|.+++.+++.++..++++||+++.++.+++  +++.    .  ....+++++++|+.++.-......+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar--~~~~----~--~~~~rv~v~~~Da~~~l~~~~~~~fDv  162 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSR--EWFD----I--PRAPRVKIRVDDARMVAESFTPASRDV  162 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHH--HHSC----C--CCTTTEEEEESCHHHHHHTCCTTCEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHH--Hhcc----c--cCCCceEEEECcHHHHHhhccCCCCCE
Confidence            4899999999999999998765556999999998665554  2221    0  113589999999976421111135788


Q ss_pred             EEEeccccC--cC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        137 VFVNNFAFG--PT---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       137 v~~~~~~~~--~~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |+++.+.+.  +.   ....++++.++|||||++++.
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~  199 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVAN  199 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            998765332  11   267789999999999999975

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.27  E-value=4.1e-12  Score=113.16  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~  132 (268)
                      .++.+|||||||+|.+++.+++..+..+|+++|+|+.++..++  +++...  ..+...++++++++|+.+. +..+  .
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar--~~~~~~--~~~~~~~~v~~~~~D~~~~l~~~~--~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSK--IYFKNI--SCGYEDKRVNVFIEDASKFLENVT--N  188 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCTTT--SGGGGSTTEEEEESCHHHHHHHCC--S
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHHHhh--ccccCCCcEEEEEccHHHHHhhcC--C
Confidence            4568999999999999999887656667999999998655554  322210  0112235899999998763 2222  3


Q ss_pred             ceEEEEEecccc-Cc--CH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAF-GP--TV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~-~~--~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++.... .+  ..  ...++++.+.|||||++++.
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            578898876421 11  12  67789999999999999984

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.27  E-value=1.4e-11  Score=105.48  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .....+..+++.+++.++++|||||||+|.++..++.. +. +|+|+|+|+.++..++  +++.        ..++++++
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~-~v~~vD~~~~~~~~a~--~~~~--------~~~~v~~~   81 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CN-FVTAIEIDHKLCKTTE--NKLV--------DHDNFQVL   81 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEECSCHHHHHHHH--HHTT--------TCCSEEEE
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CC-eEEEEECCHHHHHHHH--Hhhc--------cCCCeEEE
Confidence            34567788999999999999999999999999999876 44 4999999997544433  2211        13589999


Q ss_pred             EcCCCCCcccccccceEEEEEecccc
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAF  144 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~  144 (268)
                      ++|+.++++++. .++ .|++|..++
T Consensus        82 ~~D~~~~~~~~~-~~~-~vv~nlPy~  105 (244)
T 1qam_A           82 NKDILQFKFPKN-QSY-KIFGNIPYN  105 (244)
T ss_dssp             CCCGGGCCCCSS-CCC-EEEEECCGG
T ss_pred             EChHHhCCcccC-CCe-EEEEeCCcc
Confidence            999999887532 244 455564443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.27  E-value=2.5e-11  Score=113.55  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             HHHHcCCC--CCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         47 MIDQINAT--PDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        47 ll~~l~~~--~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +...++..  +|.+|||+|||+|+.+..+|...+ ...|+|+|+|+.++..  +++++++    .|.  .+++++++|+.
T Consensus       107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~--~~~n~~r----~g~--~nv~~~~~D~~  178 (479)
T 2frx_A          107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKV--LHANISR----CGI--SNVALTHFDGR  178 (479)
T ss_dssp             HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHH--HHHHHHH----HTC--CSEEEECCCST
T ss_pred             HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH--HHHHHHH----cCC--CcEEEEeCCHH
Confidence            33456777  999999999999999999998764 3469999999974444  3344432    343  47999999999


Q ss_pred             CCcc-cccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEH-REKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~-~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++. .+.  .+|+|+++..|.       .++                ....+.++++.|||||+++.+
T Consensus       179 ~~~~~~~~--~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          179 VFGAAVPE--MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             THHHHSTT--CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Hhhhhccc--cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            8764 222  467888864431       122                134578888999999999864

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.27  E-value=1.2e-11  Score=113.00  Aligned_cols=115  Identities=10%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+  .++.+|||+|||+|.+++.+|+. |+.+|+|+|+|+.++..++  ++++    ..+....+++|+++|+.+
T Consensus       212 ~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~--~n~~----~ngl~~~~v~~~~~D~~~  282 (396)
T 3c0k_A          212 RLATRRY--VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIAR--QNVE----LNKLDLSKAEFVRDDVFK  282 (396)
T ss_dssp             HHHHHHH--CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHH--HHHH----HTTCCGGGEEEEESCHHH
T ss_pred             HHHHHHh--hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH--HHHH----HcCCCccceEEEECCHHH
Confidence            3444444  57889999999999999998874 5656999999997555543  4443    233301389999999987


Q ss_pred             Cccc--ccccceEEEEEeccccC----------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHR--EKITQASIVFVNNFAFG----------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~--~~~~d~dvv~~~~~~~~----------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +...  .....+|+|+++...+.          ......+.++.+.|||||.++++
T Consensus       283 ~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  338 (396)
T 3c0k_A          283 LLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF  338 (396)
T ss_dssp             HHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5321  11135788998754332          34567788899999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.27  E-value=9.4e-12  Score=115.77  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...++..+|.+|||+|||+|+.+..+|...+. ..|+|+|+|+.++..  +++++++    .|.  . +.++++|+.++
T Consensus        93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~--a~~n~~r----~G~--~-v~~~~~Da~~l  163 (464)
T 3m6w_A           93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRG--LLENVER----WGA--P-LAVTQAPPRAL  163 (464)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH--HHHHHHH----HCC--C-CEEECSCHHHH
T ss_pred             HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH--HHHHHHH----cCC--e-EEEEECCHHHh
Confidence            455678899999999999999999999987653 469999999974444  3344442    343  3 99999999887


Q ss_pred             c-ccccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E-HREKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~-~~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + +...  .+|+|+++..|-       .++.                ...+.++.+.|||||+++.+
T Consensus       164 ~~~~~~--~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys  228 (464)
T 3m6w_A          164 AEAFGT--YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS  228 (464)
T ss_dssp             HHHHCS--CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhccc--cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            6 2222  467888765441       1222                55678888999999999854

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.27  E-value=6.4e-12  Score=109.91  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREK  130 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~  130 (268)
                      ...++.+|||||||+|.+++.+++..+..+++++|+++.++.+++  +++...  ..+...++++++++|+.+. +..+ 
T Consensus        75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~--~~~~~~--~~~~~~~~v~~~~~D~~~~l~~~~-  149 (283)
T 2i7c_A           75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSK--IYFKNI--SCGYEDKRVNVFIEDASKFLENVT-  149 (283)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCTTT--SGGGGSTTEEEEESCHHHHHHHCC-
T ss_pred             cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHhHHh--ccccCCCcEEEEECChHHHHHhCC-
Confidence            345678999999999999999887655667999999997555544  322110  0011235899999999763 2212 


Q ss_pred             ccceEEEEEeccccC-c--CH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFG-P--TV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~-~--~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ..+|+|+++.+.+. +  .+  ...++++.+.|||||++++.
T Consensus       150 -~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          150 -NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             -SCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence             35788888765321 2  22  57889999999999999976

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.26  E-value=6e-13  Score=107.64  Aligned_cols=90  Identities=11%  Similarity=0.013  Sum_probs=68.3

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-  127 (268)
                      ..+++++|++|||||||.                +++|+|+.|+..++  ++.          ..+++++++|+.++++ 
T Consensus         6 ~~~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~--~~~----------~~~~~~~~~d~~~~~~~   57 (176)
T 2ld4_A            6 ADFGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQ--ALT----------GNEGRVSVENIKQLLQS   57 (176)
T ss_dssp             TTTTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHH--HHT----------TTTSEEEEEEGGGGGGG
T ss_pred             hccCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHH--Hhc----------ccCcEEEEechhcCccc
Confidence            446789999999999996                23888887544433  211          1258999999999886 


Q ss_pred             --cccccceEEEEEecc-ccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 --REKITQASIVFVNNF-AFG-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 --~~~~~d~dvv~~~~~-~~~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        +++  .+|+|+++.. +|. ++....+++++|+|||||+|++.
T Consensus        58 ~~~~~--~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           58 AHKES--SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             CCCSS--CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCC--CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence              444  3567777554 555 78999999999999999999985

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.26  E-value=1.5e-11  Score=108.49  Aligned_cols=93  Identities=10%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      .+..+..+++.+++.++++|||||||+|.++..++.. +. +|+|+|+|+.++..++  +++.    ..+  ..++++++
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~-~v~~vDi~~~~~~~a~--~~~~----~~~--~~~v~~~~   96 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AK-KVITIDIDSRMISEVK--KRCL----YEG--YNNLEVYE   96 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SS-EEEEECSCHHHHHHHH--HHHH----HTT--CCCEEC--
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CC-EEEEEECCHHHHHHHH--HHHH----HcC--CCceEEEE
Confidence            3556778889999999999999999999999998875 44 4999999997555443  3322    122  25899999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCc
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGP  146 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~  146 (268)
                      +|+.++++.    .+|+|+++..+++.
T Consensus        97 ~D~~~~~~~----~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           97 GDAIKTVFP----KFDVCTANIPYKIS  119 (299)
T ss_dssp             --CCSSCCC----CCSEEEEECCGGGH
T ss_pred             CchhhCCcc----cCCEEEEcCCcccc
Confidence            999988753    35678888665543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.26  E-value=3.7e-12  Score=113.10  Aligned_cols=109  Identities=14%  Similarity=0.155  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT  132 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~  132 (268)
                      .++.+|||||||+|.+++.+++..+..+|+++|+|+.++.+|+  +++...  ..+...++++++++|+.+. +..+  .
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar--~~~~~~--~~~~~~~rv~~~~~D~~~~l~~~~--~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAK--KFLPGM--SCGFSHPKLDLFCGDGFEFLKNHK--N  180 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHH--HHCTTT--SGGGGCTTEEEECSCHHHHHHHCT--T
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHH--HHHHHh--ccccCCCCEEEEEChHHHHHHhcC--C
Confidence            4567999999999999999988666667999999997555554  332210  0022235899999999763 3222  3


Q ss_pred             ceEEEEEeccccC-cC--H--HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFG-PT--V--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~-~~--~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...+. +.  +  ...++++.+.|||||++++.
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~  221 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  221 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence            4788988765321 11  1  56788999999999999985

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.25  E-value=7e-11  Score=103.90  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=72.3

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ..+..+.++++.+++.++++|||||||+|.++..+++. +. +|+|||+++.++..++  +++.        ..++++++
T Consensus        34 ~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~-~V~aVEid~~li~~a~--~~~~--------~~~~v~vi  101 (295)
T 3gru_A           34 IDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AK-KVYVIEIDKSLEPYAN--KLKE--------LYNNIEII  101 (295)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEEESCGGGHHHHH--HHHH--------HCSSEEEE
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CC-EEEEEECCHHHHHHHH--HHhc--------cCCCeEEE
Confidence            34567788999999999999999999999999999886 44 4999999998665554  3222        13589999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccC
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFG  145 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~  145 (268)
                      ++|+.++++++..  +|+|++|..++.
T Consensus       102 ~gD~l~~~~~~~~--fD~Iv~NlPy~i  126 (295)
T 3gru_A          102 WGDALKVDLNKLD--FNKVVANLPYQI  126 (295)
T ss_dssp             ESCTTTSCGGGSC--CSEEEEECCGGG
T ss_pred             ECchhhCCcccCC--ccEEEEeCcccc
Confidence            9999998876543  467777755543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.24  E-value=1e-11  Score=112.99  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~~  132 (268)
                      ++.+|||+|||+|.+++.+|..  ..+|+|+|+|+.++..++  ++++    ..+.  .+++|+++|+.++...  ....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~--~n~~----~n~~--~~~~~~~~d~~~~~~~~~~~~~  278 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAE--ENAR----LNGL--GNVRVLEANAFDLLRRLEKEGE  278 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHH--HHHH----HTTC--TTEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHH--HHHH----HcCC--CCceEEECCHHHHHHHHHhcCC
Confidence            7889999999999999999886  445999999997555543  4433    2333  3599999999875321  0123


Q ss_pred             ceEEEEEeccccC----------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFG----------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~----------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...+.          ......+.++.+.|||||.++++
T Consensus       279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  324 (382)
T 1wxx_A          279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA  324 (382)
T ss_dssp             CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            5788998765443          22455678888999999999876

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.24  E-value=1.3e-11  Score=110.60  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||+|||+|.+++. |+  +..+|+|+|+|+.++..++  ++++    ..+. ..+++++++|+.++.     .
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~--~n~~----~n~l-~~~v~~~~~D~~~~~-----~  257 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLK--KNIK----LNKL-EHKIIPILSDVREVD-----V  257 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEESCGGGCC-----C
T ss_pred             cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEECChHHhc-----C
Confidence            36889999999999999998 76  4556999999997555544  4433    2333 247999999998765     3


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++...+   ....+..+.+.|+|||.+++.
T Consensus       258 ~fD~Vi~dpP~~---~~~~l~~~~~~L~~gG~l~~~  290 (336)
T 2yx1_A          258 KGNRVIMNLPKF---AHKFIDKALDIVEEGGVIHYY  290 (336)
T ss_dssp             CEEEEEECCTTT---GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCcEEEECCcHh---HHHHHHHHHHHcCCCCEEEEE
Confidence            568888874433   236778888999999999875

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=2.2e-11  Score=111.33  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+ .++|.+|||+|||+|.+++.+|+. |.. |+|+|+|+.++..++  ++++    ..+.   ..++.++|+.+
T Consensus       205 r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~-ga~-V~avDis~~al~~a~--~n~~----~ng~---~~~~~~~D~~~  272 (393)
T 4dmg_A          205 RRLFEAM-VRPGERVLDVYSYVGGFALRAARK-GAY-ALAVDKDLEALGVLD--QAAL----RLGL---RVDIRHGEALP  272 (393)
T ss_dssp             HHHHHTT-CCTTCEEEEESCTTTHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HHTC---CCEEEESCHHH
T ss_pred             HHHHHHH-hcCCCeEEEcccchhHHHHHHHHc-CCe-EEEEECCHHHHHHHH--HHHH----HhCC---CCcEEEccHHH
Confidence            3444433 456999999999999999998874 776 999999998555544  4443    2333   23577999987


Q ss_pred             CcccccccceEEEEEeccccCc----------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGP----------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~----------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.-... ..+|+|+++..++..          +....+..+.+.|||||++++.
T Consensus       273 ~l~~~~-~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~  325 (393)
T 4dmg_A          273 TLRGLE-GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS  325 (393)
T ss_dssp             HHHTCC-CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHhc-CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            431111 127889988665442          2345677788999999999854

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.23  E-value=2.4e-12  Score=110.15  Aligned_cols=114  Identities=17%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..+++.+++.++++|||||||+|.++..++.. +. +|+|+|+|+.++..++  +++.        ...+++++++
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~-~v~~id~~~~~~~~a~--~~~~--------~~~~v~~~~~   82 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SK-QVTSIELDSHLFNLSS--EKLK--------LNTRVTLIHQ   82 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SS-EEEESSSSCSSSSSSS--CTTT--------TCSEEEECCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CC-eEEEEECCHHHHHHHH--HHhc--------cCCceEEEEC
Confidence            345678889999999999999999999999998886 44 4999999998766554  1110        1358999999


Q ss_pred             CCCCCcccccccceEEEEEeccccCcC------------HHHHH----HHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGPT------------VDHAL----KERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~~------------~~~~l----~e~~r~LkpGG~~i~~  168 (268)
                      |+.+++++++ ..+ .|++|..++...            ....+    +.+.|+|||||++++.
T Consensus        83 D~~~~~~~~~-~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           83 DILQFQFPNK-QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             CCTTTTCCCS-SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             ChhhcCcccC-CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            9999886531 234 455664433221            11122    4578999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.23  E-value=2e-11  Score=113.41  Aligned_cols=112  Identities=18%  Similarity=0.140  Sum_probs=81.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...++..+|++|||+|||+|+.+..+|...+. ..|+|+|+|+.++..  +++++++    .|.  .++.++++|+.++
T Consensus        97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~--~~~n~~r----~g~--~nv~v~~~Da~~l  168 (456)
T 3m4x_A           97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKI--LSENIER----WGV--SNAIVTNHAPAEL  168 (456)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHH--HHHHHHH----HTC--SSEEEECCCHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHH--HHHHHHH----cCC--CceEEEeCCHHHh
Confidence            455678899999999999999999999987643 469999999874443  4454443    443  4799999999876


Q ss_pred             cc-cccccceEEEEEeccccC-------cCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EH-REKITQASIVFVNNFAFG-------PTV----------------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~-~~~~~d~dvv~~~~~~~~-------~~~----------------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +. .+  ..+|+|+++..|..       ++.                ...+.++.+.|||||+++.+
T Consensus       169 ~~~~~--~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  233 (456)
T 3m4x_A          169 VPHFS--GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS  233 (456)
T ss_dssp             HHHHT--TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhcc--ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            52 22  24688988765321       111                14578888999999999854

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.22  E-value=3.1e-11  Score=110.57  Aligned_cols=109  Identities=17%  Similarity=0.079  Sum_probs=80.2

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      ....+..+++.+...++.+|||+|||+|.++..+++.. +...++|+|+++.++.+|                 .+++++
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------------~~~~~~   86 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------------PWAEGI   86 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------------TTEEEE
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------------CCCcEE
Confidence            34556677888876677899999999999999988876 345699999999744332                 378999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccC------------cCHH------------------HHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFG------------PTVD------------------HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~------------~~~~------------------~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+.+..   ..+|+|++|..+..            .+..                  ..+..+.+.|||||++++.
T Consensus        87 ~~D~~~~~~~---~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A           87 LADFLLWEPG---EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             ESCGGGCCCS---SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eCChhhcCcc---CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999876532   25788998754321            1111                  3367788999999998865

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.22  E-value=2e-11  Score=119.32  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=80.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..++..+  .+|.+|||+|||+|.+++.+|. .|..+|++||+|+.++..++  ++++    ..|....+++++++|+.+
T Consensus       531 r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~--~N~~----~ngl~~~~v~~i~~D~~~  601 (703)
T 3v97_A          531 RRMLGQM--SKGKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAE--RNLR----LNGLTGRAHRLIQADCLA  601 (703)
T ss_dssp             HHHHHHH--CTTCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHHH----HTTCCSTTEEEEESCHHH
T ss_pred             HHHHHHh--cCCCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHH--HHHH----HcCCCccceEEEecCHHH
Confidence            3444442  4788999999999999998876 57767999999998555544  4443    344433479999999987


Q ss_pred             C-cccccccceEEEEEeccccC------------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 E-EHREKITQASIVFVNNFAFG------------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l-~~~~~~~d~dvv~~~~~~~~------------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      + +...  ..+|+|+++...+.            .+....+.++.++|||||++++.
T Consensus       602 ~l~~~~--~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s  656 (703)
T 3v97_A          602 WLREAN--EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS  656 (703)
T ss_dssp             HHHHCC--CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHhcC--CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3 3322  35788998765443            12344577788999999999975

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.22  E-value=5.1e-12  Score=109.44  Aligned_cols=100  Identities=11%  Similarity=-0.024  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ..+.+|||||||+|.+++.+++. + .+|+++|+++.++..|+  +++....  .+...++++++.+|+.+..     ..
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar--~~~~~~~--~~~~~~rv~~~~~D~~~~~-----~~  139 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFI--SFFPHFH--EVKNNKNFTHAKQLLDLDI-----KK  139 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGT--TTSTTHH--HHHTCTTEEEESSGGGSCC-----CC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHH--HHHHhhc--cccCCCeEEEEechHHHHH-----hh
Confidence            45679999999999999998887 7 67999999998666654  2221100  0112358999999998754     24


Q ss_pred             eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+++.    .++...++++.+.|||||++++.
T Consensus       140 fD~Ii~d~----~dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          140 YDLIFCLQ----EPDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             EEEEEESS----CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCEEEECC----CChHHHHHHHHHhcCCCcEEEEE
Confidence            68888863    34456899999999999999974

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.20  E-value=9.5e-11  Score=101.85  Aligned_cols=106  Identities=21%  Similarity=0.200  Sum_probs=77.0

Q ss_pred             cccCCCCCCCCccc---CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHH
Q psy17227         25 LNVYQPFSPFVYGE---TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVF  101 (268)
Q Consensus        25 ~~~y~~~~~~~~g~---~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~  101 (268)
                      ++.|.......+|.   .....+.++++.+++.++ +|||||||+|.++..++.. +.. |+|||+|+.++..++  +++
T Consensus        14 ~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~-V~avEid~~~~~~l~--~~~   88 (271)
T 3fut_A           14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAE-VTAIEKDLRLRPVLE--ETL   88 (271)
T ss_dssp             HHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCC-EEEEESCGGGHHHHH--HHT
T ss_pred             HHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCE-EEEEECCHHHHHHHH--Hhc
Confidence            34444444445554   345677889999999999 9999999999999999886 444 999999998655543  221


Q ss_pred             HHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC
Q psy17227        102 KRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG  145 (268)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~  145 (268)
                               ...+++++++|+.++++++. ..+|.|++|..++.
T Consensus        89 ---------~~~~v~vi~~D~l~~~~~~~-~~~~~iv~NlPy~i  122 (271)
T 3fut_A           89 ---------SGLPVRLVFQDALLYPWEEV-PQGSLLVANLPYHI  122 (271)
T ss_dssp             ---------TTSSEEEEESCGGGSCGGGS-CTTEEEEEEECSSC
T ss_pred             ---------CCCCEEEEECChhhCChhhc-cCccEEEecCcccc
Confidence                     12589999999999887542 24567888766544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.17  E-value=1.1e-10  Score=100.33  Aligned_cols=91  Identities=12%  Similarity=0.095  Sum_probs=69.0

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ....+.++++.+++.++++|||||||+|.++..++.. +..+|+|||+|+.++..++      +    .  ...++++++
T Consensus        16 d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~------~----~--~~~~v~~i~   82 (249)
T 3ftd_A           16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLK------S----I--GDERLEVIN   82 (249)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHT------T----S--CCTTEEEEC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHH------h----c--cCCCeEEEE
Confidence            3567788999999999999999999999999998875 5556999999997444433      1    1  135899999


Q ss_pred             cCCCCCcccccccceEEEEEecccc
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAF  144 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~  144 (268)
                      +|+.++++++...++ +|+.|..++
T Consensus        83 ~D~~~~~~~~~~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           83 EDASKFPFCSLGKEL-KVVGNLPYN  106 (249)
T ss_dssp             SCTTTCCGGGSCSSE-EEEEECCTT
T ss_pred             cchhhCChhHccCCc-EEEEECchh
Confidence            999999886543233 566665544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.16  E-value=2.4e-10  Score=105.71  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||+|||+|.+++.+|.. + .+|+|+|+|+.++..|+  ++++    ..+.  .+++|+++|+
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~-~~V~gvD~s~~al~~A~--~n~~----~~~~--~~v~f~~~d~  343 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-A-ASVVGVEGVPALVEKGQ--QNAR----LNGL--QNVTFYHENL  343 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-S-SEEEEEESCHHHHHHHH--HHHH----HTTC--CSEEEEECCT
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-C-CEEEEEeCCHHHHHHHH--HHHH----HcCC--CceEEEECCH
Confidence            3455777778888999999999999999998876 3 45999999998555544  4333    2333  3899999999


Q ss_pred             CC----CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LT----EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~----l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+    +++.+.  .+|+|+++......  ...+.. ...++|++.++++
T Consensus       344 ~~~l~~~~~~~~--~fD~Vv~dPPr~g~--~~~~~~-l~~~~p~~ivyvs  388 (433)
T 1uwv_A          344 EEDVTKQPWAKN--GFDKVLLDPARAGA--AGVMQQ-IIKLEPIRIVYVS  388 (433)
T ss_dssp             TSCCSSSGGGTT--CCSEEEECCCTTCC--HHHHHH-HHHHCCSEEEEEE
T ss_pred             HHHhhhhhhhcC--CCCEEEECCCCccH--HHHHHH-HHhcCCCeEEEEE
Confidence            87    334333  45778887543221  233333 3457899988775

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.15  E-value=2.4e-10  Score=104.15  Aligned_cols=120  Identities=14%  Similarity=0.057  Sum_probs=84.4

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--------------------------------------c
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--------------------------------------K   80 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--------------------------------------~   80 (268)
                      +.+.....++...++.++.+|||+|||+|.+++.+|.....                                      .
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            34455667888889999999999999999999998875321                                      2


Q ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-----cCHHHHHHHH
Q psy17227         81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-----PTVDHALKER  155 (268)
Q Consensus        81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~~~~~~l~e~  155 (268)
                      .|+|+|+|+.++.+|+  +++.    ..|.. .+++|.++|+.+++.+.   .+|+|++|..+..     .+....++++
T Consensus       259 ~V~GvDid~~ai~~Ar--~Na~----~~gl~-~~i~~~~~D~~~l~~~~---~~D~Iv~NPPyg~rl~~~~~l~~ly~~l  328 (385)
T 3ldu_A          259 KIYGYDIDEESIDIAR--ENAE----IAGVD-EYIEFNVGDATQFKSED---EFGFIITNPPYGERLEDKDSVKQLYKEL  328 (385)
T ss_dssp             CEEEEESCHHHHHHHH--HHHH----HHTCG-GGEEEEECCGGGCCCSC---BSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHH--HHHH----HcCCC-CceEEEECChhhcCcCC---CCcEEEECCCCcCccCCHHHHHHHHHHH
Confidence            4999999998766665  3333    23432 47999999999887542   4678988866431     2334445555


Q ss_pred             HhcCCC--CcEEEEe
Q psy17227        156 FQDLKD--GARIVSS  168 (268)
Q Consensus       156 ~r~Lkp--GG~~i~~  168 (268)
                      .+.||+  |+.+++.
T Consensus       329 g~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          329 GYAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHHTSBSCEEEEE
T ss_pred             HHHHhhCCCCEEEEE
Confidence            566666  7776653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.15  E-value=2.9e-10  Score=103.86  Aligned_cols=121  Identities=12%  Similarity=-0.005  Sum_probs=84.4

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--------------------------------------
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--------------------------------------   79 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--------------------------------------   79 (268)
                      ++.+.....++...++.++..|||++||+|.+++.+|.....                                      
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            345556677888899999999999999999999998875432                                      


Q ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-----cCHHHHHHH
Q psy17227         80 KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-----PTVDHALKE  154 (268)
Q Consensus        80 ~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~~~~~~l~e  154 (268)
                      ..|+|+|+|+.++..|+  +++.    ..|.. .+++|+++|+.+++.++   .+|+|++|..+..     .+....+.+
T Consensus       264 ~~V~GvDid~~al~~Ar--~Na~----~~gl~-~~I~~~~~D~~~~~~~~---~fD~Iv~NPPYg~rl~~~~~l~~ly~~  333 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAK--QNAV----EAGLG-DLITFRQLQVADFQTED---EYGVVVANPPYGERLEDEEAVRQLYRE  333 (393)
T ss_dssp             CCEEEEESCHHHHHHHH--HHHH----HTTCT-TCSEEEECCGGGCCCCC---CSCEEEECCCCCCSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHH--HHHH----HcCCC-CceEEEECChHhCCCCC---CCCEEEECCCCccccCCchhHHHHHHH
Confidence            24999999998666655  3333    34442 46999999999987543   4678888866432     223334444


Q ss_pred             HHhcCCC--CcEEEEe
Q psy17227        155 RFQDLKD--GARIVSS  168 (268)
Q Consensus       155 ~~r~Lkp--GG~~i~~  168 (268)
                      +.+.||+  ||.+++.
T Consensus       334 lg~~lk~~~g~~~~ii  349 (393)
T 3k0b_A          334 MGIVYKRMPTWSVYVL  349 (393)
T ss_dssp             HHHHHHTCTTCEEEEE
T ss_pred             HHHHHhcCCCCEEEEE
Confidence            4455554  8877654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.14  E-value=1.2e-11  Score=118.25  Aligned_cols=102  Identities=15%  Similarity=0.073  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI  131 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~  131 (268)
                      .++.+|||||||.|.++..+|+. |+. |+|||+|+.++.+|+  .++.    +.|  ..+++|.++|++++.  +.+..
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~-ga~-V~giD~~~~~i~~a~--~~a~----~~~--~~~~~~~~~~~~~~~~~~~~~~  134 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK-GAT-IVGIDFQQENINVCR--ALAE----ENP--DFAAEFRVGRIEEVIAALEEGE  134 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----TST--TSEEEEEECCHHHHHHHCCTTS
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC-CCE-EEEECCCHHHHHHHH--HHHH----hcC--CCceEEEECCHHHHhhhccCCC
Confidence            45679999999999999999874 776 999999998766665  3332    122  137999999999873  33444


Q ss_pred             cceEEEEEe-ccccCcCHH--HHHHHHHhcCCCCcEEEE
Q psy17227        132 TQASIVFVN-NFAFGPTVD--HALKERFQDLKDGARIVS  167 (268)
Q Consensus       132 ~d~dvv~~~-~~~~~~~~~--~~l~e~~r~LkpGG~~i~  167 (268)
                      |  |+|++. .+.|.+++.  ..+..+++.|+++|..++
T Consensus       135 f--D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          135 F--DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             C--SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             c--cEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            4  556654 445666553  234566777888776543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.14  E-value=2.8e-10  Score=105.00  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=69.4

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +.++.+|||+|||+|.+++.+|+. +. +|+|+|+|+.++..|+  ++++    ..+.  . ++|+++|+.++...    
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~-~~-~V~gvD~s~~ai~~A~--~n~~----~ngl--~-v~~~~~d~~~~~~~----  352 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR-GF-NVKGFDSNEFAIEMAR--RNVE----INNV--D-AEFEVASDREVSVK----  352 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT-TC-EEEEEESCHHHHHHHH--HHHH----HHTC--C-EEEEECCTTTCCCT----
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc-CC-EEEEEECCHHHHHHHH--HHHH----HcCC--c-EEEEECChHHcCcc----
Confidence            578889999999999999998875 44 5999999998555544  3333    2232  3 99999999986522    


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|+++....  .....+.+..+.|+|||.++++
T Consensus       353 ~fD~Vv~dPPr~--g~~~~~~~~l~~l~p~givyvs  386 (425)
T 2jjq_A          353 GFDTVIVDPPRA--GLHPRLVKRLNREKPGVIVYVS  386 (425)
T ss_dssp             TCSEEEECCCTT--CSCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCCEEEEcCCcc--chHHHHHHHHHhcCCCcEEEEE
Confidence            457788764421  1222333344569999999886

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.13  E-value=4.3e-10  Score=102.39  Aligned_cols=120  Identities=15%  Similarity=0.035  Sum_probs=85.8

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--------------------------------------c
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--------------------------------------K   80 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--------------------------------------~   80 (268)
                      +.+.....++...++.++..|||.+||+|.+++.+|.....                                      .
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            44555667888889999999999999999999998865322                                      2


Q ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-----cCHHHHHHHH
Q psy17227         81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-----PTVDHALKER  155 (268)
Q Consensus        81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~~~~~~l~e~  155 (268)
                      +++|+|+|+.++..|+  ++++    ..|.. ..++|+++|+.+++.++   .+|+|++|..+..     .+....+.++
T Consensus       258 ~v~GvDid~~al~~Ar--~Na~----~~gl~-~~I~~~~~D~~~l~~~~---~fD~Iv~NPPYG~rl~~~~~l~~ly~~l  327 (384)
T 3ldg_A          258 DISGFDFDGRMVEIAR--KNAR----EVGLE-DVVKLKQMRLQDFKTNK---INGVLISNPPYGERLLDDKAVDILYNEM  327 (384)
T ss_dssp             CEEEEESCHHHHHHHH--HHHH----HTTCT-TTEEEEECCGGGCCCCC---CSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHH--HHHH----HcCCC-CceEEEECChHHCCccC---CcCEEEECCchhhccCCHHHHHHHHHHH
Confidence            4999999998666655  3333    34442 46999999999987543   4678998866431     2344555666


Q ss_pred             HhcCCC--CcEEEEe
Q psy17227        156 FQDLKD--GARIVSS  168 (268)
Q Consensus       156 ~r~Lkp--GG~~i~~  168 (268)
                      .+.||+  ||.+++.
T Consensus       328 g~~lk~~~g~~~~ii  342 (384)
T 3ldg_A          328 GETFAPLKTWSQFIL  342 (384)
T ss_dssp             HHHHTTCTTSEEEEE
T ss_pred             HHHHhhCCCcEEEEE
Confidence            666666  8887654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.11  E-value=2.3e-10  Score=99.80  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      ....+.++++.+++.++++|||||||+|.++..+++..+.  .+|+|||+|+.++..++  ++.          ..++++
T Consensus        27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~--~~~----------~~~v~~   94 (279)
T 3uzu_A           27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLE--QRF----------GELLEL   94 (279)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHH--HHH----------GGGEEE
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHH--Hhc----------CCCcEE
Confidence            3567788999999999999999999999999999987543  23999999997555443  211          248999


Q ss_pred             EEcCCCCCccccccc----ceEEEEEecc
Q psy17227        118 VKGDFLTEEHREKIT----QASIVFVNNF  142 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~----d~dvv~~~~~  142 (268)
                      +++|+.++++++-..    ....|+.|..
T Consensus        95 i~~D~~~~~~~~~~~~~~~~~~~vv~NlP  123 (279)
T 3uzu_A           95 HAGDALTFDFGSIARPGDEPSLRIIGNLP  123 (279)
T ss_dssp             EESCGGGCCGGGGSCSSSSCCEEEEEECC
T ss_pred             EECChhcCChhHhcccccCCceEEEEccC
Confidence            999999998765321    1235666643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.11  E-value=2.2e-10  Score=98.65  Aligned_cols=90  Identities=13%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ....+.++++.+++.++++|||||||+|.++..++.. + .+|+|||+|+.++..++  +++.        ..+++++++
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avEid~~~~~~~~--~~~~--------~~~~v~~i~   81 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-C-DNLALVEIDRDLVAFLQ--KKYN--------QQKNITIYQ   81 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-S-SEEEEEECCHHHHHHHH--HHHT--------TCTTEEEEE
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-C-CEEEEEECCHHHHHHHH--HHHh--------hCCCcEEEE
Confidence            3567788999999999999999999999999998875 4 45999999997554443  2221        135899999


Q ss_pred             cCCCCCcccccc--cceEEEEEecc
Q psy17227        120 GDFLTEEHREKI--TQASIVFVNNF  142 (268)
Q Consensus       120 gD~~~l~~~~~~--~d~dvv~~~~~  142 (268)
                      +|+.++++++-.  ..+| |++|..
T Consensus        82 ~D~~~~~~~~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           82 NDALQFDFSSVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             SCTTTCCGGGSCCSSCEE-EEEECC
T ss_pred             cchHhCCHHHhccCCCeE-EEecCC
Confidence            999999875421  2355 555544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.11  E-value=1.3e-10  Score=110.34  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC------------------CcEEEEEeCCCChhHHHHHHHHHH
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG------------------CKICWGVEKADLPAKYAEMHTVFK  102 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~------------------~~~v~GiD~s~~~~~~a~~~~~~~  102 (268)
                      ...+..+++.+...++.+|||.|||+|+++..+++...                  ...++|+|+++.+..+|+++-.+ 
T Consensus       155 ~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l-  233 (541)
T 2ar0_A          155 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-  233 (541)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-
Confidence            44455677778888899999999999999998876531                  12499999999988887754322 


Q ss_pred             HHHHHhcccc---ccEEEEEcCCCCCcccccccceEEEEEeccccCc--------------C-HHHHHHHHHhcCCCCcE
Q psy17227        103 RWMQWYGKRH---GEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP--------------T-VDHALKERFQDLKDGAR  164 (268)
Q Consensus       103 ~~~~~~~~~~---~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~--------------~-~~~~l~e~~r~LkpGG~  164 (268)
                           .|...   .++.+.++|....+.. ....+|+|++|..+...              + ....+..+++.|||||+
T Consensus       234 -----~gi~~~~~~~~~I~~gDtL~~~~~-~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  307 (541)
T 2ar0_A          234 -----HDIEGNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR  307 (541)
T ss_dssp             -----TTCCCBGGGTBSEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             -----hCCCccccccCCeEeCCCcccccc-cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence                 23221   1278999998775421 12357889988653221              1 12467888999999999


Q ss_pred             EEEe
Q psy17227        165 IVSS  168 (268)
Q Consensus       165 ~i~~  168 (268)
                      +++.
T Consensus       308 ~a~V  311 (541)
T 2ar0_A          308 AAVV  311 (541)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.08  E-value=1.2e-09  Score=96.68  Aligned_cols=88  Identities=14%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ++..+++.+|++|||+|||+|+.+..+|... +..+|+++|+++.++..  ++++++    ..|.  .+++++++|+.++
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~--~~~n~~----r~g~--~~v~~~~~D~~~~  165 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS--MATLLA----RAGV--SCCELAEEDFLAV  165 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH--HHHHHH----HTTC--CSEEEEECCGGGS
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHH--HHHHHH----HcCC--CeEEEEeCChHhc
Confidence            4456788999999999999999999999875 34569999999874333  344444    2343  4799999999887


Q ss_pred             ccccc-ccceEEEEEecc
Q psy17227        126 EHREK-ITQASIVFVNNF  142 (268)
Q Consensus       126 ~~~~~-~~d~dvv~~~~~  142 (268)
                      +.... ...+|.|+++..
T Consensus       166 ~~~~~~~~~fD~Vl~D~P  183 (309)
T 2b9e_A          166 SPSDPRYHEVHYILLDPS  183 (309)
T ss_dssp             CTTCGGGTTEEEEEECCC
T ss_pred             CccccccCCCCEEEEcCC
Confidence            53221 134788887543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.05  E-value=2.8e-10  Score=103.11  Aligned_cols=109  Identities=14%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+++.++.. +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.++..|+  ++++    ..|.  .+++|+++|+.
T Consensus       203 ~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~--~n~~----~ng~--~~v~~~~~d~~  271 (369)
T 3bt7_A          203 LEWALDVTKGS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQ--YNIA----ANHI--DNVQIIRMAAE  271 (369)
T ss_dssp             HHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHH--HHHH----HTTC--CSEEEECCCSH
T ss_pred             HHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHH--HHHH----HcCC--CceEEEECCHH
Confidence            34566666654 578999999999999988763  446999999998555544  4433    2343  48999999998


Q ss_pred             CCc--cccc------------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE--HREK------------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~--~~~~------------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.  +...            ...+|+|+++....     ....++.+.|+|+|+++..
T Consensus       272 ~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivyv  325 (369)
T 3bt7_A          272 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-----GLDSETEKMVQAYPRILYI  325 (369)
T ss_dssp             HHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEEE
T ss_pred             HHHHHHhhccccccccccccccCCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEEE
Confidence            753  1110            01478888764322     2335667777888888754

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.05  E-value=3.7e-10  Score=99.53  Aligned_cols=90  Identities=12%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++.+++.++.+|||+|||+|+.+..+++..+..+|+|+|+|+.++..++  +++.    ..+   .+++++++|+
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~--~~~~----~~g---~~v~~v~~d~   84 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE--EKLK----EFS---DRVSLFKVSY   84 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHTG----GGT---TTEEEEECCG
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----hcC---CcEEEEECCH
Confidence            356778888899999999999999999999998875446999999998555543  3322    222   4899999999


Q ss_pred             CCCcc--cc-cccceEEEEEec
Q psy17227        123 LTEEH--RE-KITQASIVFVNN  141 (268)
Q Consensus       123 ~~l~~--~~-~~~d~dvv~~~~  141 (268)
                      .+++.  .+ ....+|.|+++.
T Consensus        85 ~~l~~~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           85 READFLLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCEEEEcC
Confidence            98762  21 112467888764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.02  E-value=5e-10  Score=101.78  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh---------------ccccccEEEEE
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY---------------GKRHGEFRLVK  119 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~---------------~~~~~~i~~~~  119 (268)
                      ++.+|||+|||+|..++.+|+..+..+|+++|+++.++..++  ++++.    .               +.  .++++++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~--~N~~~----n~~~~~~~~~~~~~~~gl--~~i~v~~  118 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK--RNVML----NFDGELRESKGRAILKGE--KTIVINH  118 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH--HHHHH----HCCSCCEECSSEEEEESS--SEEEEEE
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHHHH----hcccccccccccccccCC--CceEEEc
Confidence            688999999999999999999877666999999998555543  44442    2               32  2499999


Q ss_pred             cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+.++.... ...+|+|+++.+.   .....+..+.+.|||||+++++
T Consensus       119 ~Da~~~~~~~-~~~fD~I~lDP~~---~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          119 DDANRLMAER-HRYFHFIDLDPFG---SPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             SCHHHHHHHS-TTCEEEEEECCSS---CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcHHHHHHhc-cCCCCEEEeCCCC---CHHHHHHHHHHhcCCCCEEEEE
Confidence            9997754211 1246888876532   2356778888999999998865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.02  E-value=4.3e-10  Score=96.71  Aligned_cols=93  Identities=17%  Similarity=0.049  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      +..+.++++.+++.++++|||||||+|.++. +++ .+..+|+|+|+++.++..++  +++.        ..++++++++
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~--~~~~--------~~~~v~~i~~   74 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQ--THPF--------LGPKLTIYQQ   74 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHH--TCTT--------TGGGEEEECS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHH--HHhc--------cCCceEEEEC
Confidence            4567789999999999999999999999999 653 32222999999997544433  2111        1248999999


Q ss_pred             CCCCCcccccc---cceEEEEEeccccC
Q psy17227        121 DFLTEEHREKI---TQASIVFVNNFAFG  145 (268)
Q Consensus       121 D~~~l~~~~~~---~d~dvv~~~~~~~~  145 (268)
                      |+.++++++..   ...++|++|..++.
T Consensus        75 D~~~~~~~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           75 DAMTFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             CGGGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             chhhCCHHHhhcccCCceEEEECCCCCc
Confidence            99998865421   12356777765543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.98  E-value=2.8e-09  Score=101.11  Aligned_cols=123  Identities=18%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             CcHHHHHHHHHHcC----CCCCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc
Q psy17227         39 TSFDLISRMIDQIN----ATPDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR  111 (268)
Q Consensus        39 ~~~~~~~~ll~~l~----~~~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~  111 (268)
                      +....+..+++.+.    ..++.+|||.+||+|+++..+++..   +...++|+|+++.+..+|+|+-.      ..|..
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~------l~gi~  274 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI------LHGVP  274 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH------HTTCC
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH------HcCCC
Confidence            33444455555554    4578899999999999999888764   23469999999988888775432      23443


Q ss_pred             cccEEEEEcCCCCC--cccccccceEEEEEecccc--C-cC---------------------HHHHHHHHHhcCC-CCcE
Q psy17227        112 HGEFRLVKGDFLTE--EHREKITQASIVFVNNFAF--G-PT---------------------VDHALKERFQDLK-DGAR  164 (268)
Q Consensus       112 ~~~i~~~~gD~~~l--~~~~~~~d~dvv~~~~~~~--~-~~---------------------~~~~l~e~~r~Lk-pGG~  164 (268)
                      ..++.+.++|....  |.. ....+|+|++|..+.  + .+                     -...+..+.+.|| |||+
T Consensus       275 ~~~~~I~~gDtL~~d~p~~-~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr  353 (542)
T 3lkd_A          275 IENQFLHNADTLDEDWPTQ-EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV  353 (542)
T ss_dssp             GGGEEEEESCTTTSCSCCS-SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred             cCccceEecceeccccccc-ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence            35789999999875  421 123567888885431  1 00                     0125788889999 9999


Q ss_pred             EEEe
Q psy17227        165 IVSS  168 (268)
Q Consensus       165 ~i~~  168 (268)
                      +++.
T Consensus       354 ~a~V  357 (542)
T 3lkd_A          354 MAIV  357 (542)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.98  E-value=9.5e-10  Score=93.33  Aligned_cols=100  Identities=14%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+..+|||||||+|-++..++   +...++|+|+|+.++.+++  +++.    ..   ..+.++..+|....+++.   .
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar--~~~~----~~---g~~~~~~v~D~~~~~~~~---~  168 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVIT--PFAR----EK---DWDFTFALQDVLCAPPAE---A  168 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHH--HHHH----HT---TCEEEEEECCTTTSCCCC---B
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHH--HHHH----hc---CCCceEEEeecccCCCCC---C
Confidence            567799999999999998765   6667999999998666654  3222    12   257899999999877654   4


Q ss_pred             eEEEEEecccc-CcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAF-GPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~-~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+++++-++| .++ ......++++.|++++.+|..
T Consensus       169 ~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          169 GDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSF  205 (253)
T ss_dssp             CSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred             cchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence            57787765533 222 222345888999999999986

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.98  E-value=2e-10  Score=99.04  Aligned_cols=113  Identities=14%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             HHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHHHHHhc-cccccEEEEEcC
Q psy17227         46 RMIDQINATPD--DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYG-KRHGEFRLVKGD  121 (268)
Q Consensus        46 ~ll~~l~~~~~--~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~~~~~~-~~~~~i~~~~gD  121 (268)
                      .+++.++++++  .+|||+|||+|..++.+|.. |+. |+|||+++.+..+++ +.+.+++.....+ . ..+++++++|
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l-~~~i~~~~~D  153 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWL-QERLQLIHAS  153 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHH-HHHEEEEESC
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhh-hcCEEEEECC
Confidence            36677788888  89999999999999999886 665 999999997555544 2222221000111 1 1479999999


Q ss_pred             CCCC-cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCc
Q psy17227        122 FLTE-EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA  163 (268)
Q Consensus       122 ~~~l-~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG  163 (268)
                      ..++ +....  .+|+|+++..+........+++..++|++.+
T Consensus       154 ~~~~L~~~~~--~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          154 SLTALTDITP--RPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHHSTTCSS--CCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHHhCcc--cCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            8763 31112  3678998876544433344555556665533

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.98  E-value=1.6e-10  Score=99.72  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHH-HHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA-EMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a-~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +...++..++.+|||+|||+|..++.+|.. ++. |+|+|+|+.+..+. .+.+.+++.....+. ..+++++++|+.++
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDT-AARINLHFGNAAEQ  151 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHH-HTTEEEEESCHHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCC-ccCeEEEECCHHHH
Confidence            344446667889999999999999998885 665 99999999321111 122222221122222 13599999999874


Q ss_pred             -c-ccccccceEEEEEeccc
Q psy17227        126 -E-HREKITQASIVFVNNFA  143 (268)
Q Consensus       126 -~-~~~~~~d~dvv~~~~~~  143 (268)
                       + +++....+|+|+++..+
T Consensus       152 l~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          152 MPALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHHCCCSEEEECCCC
T ss_pred             HHhhhccCCCccEEEECCCC
Confidence             3 33200235678877543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.97  E-value=5.5e-10  Score=95.77  Aligned_cols=103  Identities=11%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+..+|||||||+|-++..++...+..+++|+|+++.++.+++  +++.    ..|   .+.++.+.|...-+.+.   .
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~--~~l~----~~g---~~~~~~v~D~~~~~p~~---~  198 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD--EALT----RLN---VPHRTNVADLLEDRLDE---P  198 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH--HHHH----HTT---CCEEEEECCTTTSCCCS---C
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH--HHHH----hcC---CCceEEEeeecccCCCC---C
Confidence            4467999999999999998888777778999999998666554  3332    233   35899999998755432   4


Q ss_pred             eEEEEEecccc-CcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAF-GPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~-~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+++++-+++ .++ ......++++.|+|||.||+.
T Consensus       199 ~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTF  235 (281)
T ss_dssp             CSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEec
Confidence            67888776643 222 222444999999999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.95  E-value=6.7e-09  Score=101.43  Aligned_cols=124  Identities=13%  Similarity=0.057  Sum_probs=86.1

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh----------------------------------------
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT----------------------------------------   77 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~----------------------------------------   77 (268)
                      ++.+.....++...++.++.+|||.+||+|.+++.+|...                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            3555666778888899999999999999999999988642                                        


Q ss_pred             --CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-----cCHH-
Q psy17227         78 --GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-----PTVD-  149 (268)
Q Consensus        78 --~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~~~~-  149 (268)
                        ....++|+|+++.++.+|+  .++.    ..|.. ..++|.++|+.++..+.....+|+|++|..+-.     .+.. 
T Consensus       253 ~~~~~~i~G~Did~~av~~A~--~N~~----~agv~-~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~  325 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRAR--TNAR----LAGIG-ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIA  325 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHH--HHHH----HTTCG-GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHH--HHHH----HcCCC-CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHH
Confidence              1124999999998777765  3333    34543 469999999988742221114678888866421     1222 


Q ss_pred             --HHHHHHHhcCCCCcEEEEe
Q psy17227        150 --HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       150 --~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..+.++++.+.|||++++.
T Consensus       326 ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          326 LHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHhhCCCCeEEEE
Confidence              3345566777899998764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.94  E-value=4.9e-09  Score=100.61  Aligned_cols=101  Identities=22%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCHH---HHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         55 PDDVFVDLGSGVGQV---VLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~---~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      .+..|||||||+|-+   ++.++++.+.+ +|++||.|+ ++..++  +.    .+..+. .++|++++||++++..++ 
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~--~~----v~~N~~-~dkVtVI~gd~eev~LPE-  427 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTL--EN----WQFEEW-GSQVTVVSSDMREWVAPE-  427 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHH--HH----HHHHTT-GGGEEEEESCTTTCCCSS-
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHH--HH----HHhccC-CCeEEEEeCcceeccCCc-
Confidence            345799999999988   66555554443 589999998 333433  22    123344 358999999999987664 


Q ss_pred             ccceEEEEEecc---ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        131 ITQASIVFVNNF---AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       131 ~~d~dvv~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                        .+|+|+++-.   +..+.....+...-|.|||||.++
T Consensus       428 --KVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          428 --KADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             --CEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             --ccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence              5899987633   334445555555558999999986

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.91  E-value=1.4e-09  Score=99.05  Aligned_cols=104  Identities=11%  Similarity=-0.015  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc-EEEEEcCCCCCcc-ccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE-FRLVKGDFLTEEH-REK  130 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-i~~~~gD~~~l~~-~~~  130 (268)
                      ++|.+|||++||+|.+++.+|.+. |+.+|+++|+++.++..++  ++++    ..+.. .+ ++++++|+.++-- .. 
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~--~N~~----~Ngl~-~~~v~v~~~Da~~~l~~~~-  122 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK--ENFK----LNNIP-EDRYEIHGMEANFFLRKEW-  122 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH--HHHH----HTTCC-GGGEEEECSCHHHHHHSCC-
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HhCCC-CceEEEEeCCHHHHHHHhh-
Confidence            568899999999999999998874 5567999999997555443  4443    34442 24 9999999876421 11 


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|+++.+   ......+..+.+.|||||+++++
T Consensus       123 ~~~fD~V~lDP~---g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          123 GFGFDYVDLDPF---GTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             SSCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCcEEEECCC---cCHHHHHHHHHHHhCCCCEEEEE
Confidence            124789998863   12345777888999999998875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.91  E-value=6.9e-10  Score=105.33  Aligned_cols=121  Identities=14%  Similarity=0.090  Sum_probs=82.5

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC---------------CcEEEEEeCCCChhHHHHHHHHHHH
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG---------------CKICWGVEKADLPAKYAEMHTVFKR  103 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~---------------~~~v~GiD~s~~~~~~a~~~~~~~~  103 (268)
                      +....+..+++.+...++ +|||.+||+|++++.+++...               ...++|+|+++.+..+|+|+-.+  
T Consensus       229 TP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l--  305 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI--  305 (544)
T ss_dssp             CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH--
Confidence            445556667777777776 999999999999988765321               23599999999888887754322  


Q ss_pred             HHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcC------------------------------HHHHHH
Q psy17227        104 WMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPT------------------------------VDHALK  153 (268)
Q Consensus       104 ~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~------------------------------~~~~l~  153 (268)
                          .|.. .++.+.++|....+... ...+|+|++|..+...+                              -...+.
T Consensus       306 ----~gi~-~~i~i~~gDtL~~~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~  379 (544)
T 3khk_A          306 ----RGID-FNFGKKNADSFLDDQHP-DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWML  379 (544)
T ss_dssp             ----TTCC-CBCCSSSCCTTTSCSCT-TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHH
T ss_pred             ----hCCC-cccceeccchhcCcccc-cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHH
Confidence                3432 34555899987654211 13578899886532110                              114578


Q ss_pred             HHHhcCCCCcEEEEe
Q psy17227        154 ERFQDLKDGARIVSS  168 (268)
Q Consensus       154 e~~r~LkpGG~~i~~  168 (268)
                      .+.+.|||||++++.
T Consensus       380 ~~l~~Lk~gGr~aiV  394 (544)
T 3khk_A          380 HMLYHLAPTGSMALL  394 (544)
T ss_dssp             HHHHTEEEEEEEEEE
T ss_pred             HHHHHhccCceEEEE
Confidence            889999999998764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.84  E-value=4.1e-09  Score=90.76  Aligned_cols=118  Identities=12%  Similarity=-0.000  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+.++.++..++++.+|||||||+|+.+..++...+...++|+|++.++.....+.         .. ...++..+++++
T Consensus        62 KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~---------~~-~g~~ii~~~~~~  131 (277)
T 3evf_A           62 KLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV---------QS-LGWNIITFKDKT  131 (277)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC---------CB-TTGGGEEEECSC
T ss_pred             HHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc---------Cc-CCCCeEEEeccc
Confidence            45567777778899999999999999999877766777788999885421000000         00 011455567766


Q ss_pred             CCCcccccccceEEEEEecccc----CcCHHH---HHHHHHhcCCCC-cEEEEeCCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNFAF----GPTVDH---ALKERFQDLKDG-ARIVSSKSFCP  173 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~----~~~~~~---~l~e~~r~LkpG-G~~i~~~~~~~  173 (268)
                      ...++...  .+|+|+++...+    +.|...   .+..+.++|||| |.|++ .-|+|
T Consensus       132 dv~~l~~~--~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~p  187 (277)
T 3evf_A          132 DIHRLEPV--KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLAP  187 (277)
T ss_dssp             CTTTSCCC--CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCT
T ss_pred             eehhcCCC--CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecCC
Confidence            54444443  467888875433    222222   246667899999 99998 45553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.71  E-value=5.7e-08  Score=94.81  Aligned_cols=113  Identities=16%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhC---CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATG---CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~---~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      ..++.+|||.|||+|.+++.++...+   ...++|+|+++.++.+|+.+.++.......+  .....+..+|+.+.... 
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--i~~~~I~~dD~L~~~~~-  395 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--NNAPTITGEDVCSLNPE-  395 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--TBCCEEECCCGGGCCGG-
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--CCcceEEecchhccccc-
Confidence            35688999999999999999887764   2358999999987777732222110000011  12346667777653321 


Q ss_pred             cccceEEEEEeccccC--cC----------------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFG--PT----------------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~--~~----------------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+|++|..+..  ..                            ....+..+.+.|||||++++.
T Consensus       396 ~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI  464 (878)
T 3s1s_A          396 DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI  464 (878)
T ss_dssp             GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence            1235789999876421  11                            111245677899999998864

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.66  E-value=3.4e-08  Score=95.02  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCCHHHH---HHHHHhC----------CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         56 DDVFVDLGSGVGQVVL---QVAAATG----------CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~---~la~~~~----------~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +..|||||||+|-++.   .+++..+          ..+|++||.|+.+....+ ...      ..+. .++|+++++|+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~-~~~------~Ng~-~d~VtVI~gd~  481 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLK-YMN------VRTW-KRRVTIIESDM  481 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHH-HHH------HHTT-TTCSEEEESCG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHH-HHH------hcCC-CCeEEEEeCch
Confidence            4579999999999963   3333233          236999999985322211 111      1233 25799999999


Q ss_pred             CCCccc---ccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEE
Q psy17227        123 LTEEHR---EKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       123 ~~l~~~---~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      +++.++   +....+|+|+++-. .+.  +-....+..+-|.|||||.++
T Consensus       482 eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          482 RSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             GGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             hhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            998762   11246889988754 222  223345555568999999987

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.65  E-value=3.2e-07  Score=86.80  Aligned_cols=146  Identities=18%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhcCCccccccCCCCCCCCccc--CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-------
Q psy17227          8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGE--TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-------   78 (268)
Q Consensus         8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~--~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-------   78 (268)
                      .|++.++|...+      +++..... ..|+  +....+.-+++.+...++.+|+|-.||+|+++..+.....       
T Consensus       175 ~d~lG~~yE~ll------~~~~~~~g-~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~  247 (530)
T 3ufb_A          175 MHTLSRLYETML------REMRDAAG-DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVE  247 (530)
T ss_dssp             HHHHHHHHHHHH------HHHTTSSS-SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHH
T ss_pred             hHHHHHHHHHHH------HHHHHhcC-cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchh
Confidence            367777777744      33322111 2232  4455566677888889999999999999999987665321       


Q ss_pred             ------CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc--ccceEEEEEeccccCc----
Q psy17227         79 ------CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK--ITQASIVFVNNFAFGP----  146 (268)
Q Consensus        79 ------~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~--~~d~dvv~~~~~~~~~----  146 (268)
                            ...++|+|+++.+..+++|+-.+      +|.  ....+.++|....|..+.  ...+|+|++|..+-..    
T Consensus       248 ~~~~~~~~~i~G~E~~~~~~~la~mNl~l------hg~--~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~  319 (530)
T 3ufb_A          248 DREVLQESSIFGGEAKSLPYLLVQMNLLL------HGL--EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKG  319 (530)
T ss_dssp             HHHHHHTCCEEEECCSHHHHHHHHHHHHH------HTC--SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHH
T ss_pred             HHHHHhhhhhhhhhccHHHHHHHHHHHHh------cCC--ccccccccccccCchhhhcccccceEEEecCCCCcccccc
Confidence                  12389999999988888865433      233  345678899887664332  1347889988654110    


Q ss_pred             ------------CH-HHHHHHHHhcCC-------CCcEEEEe
Q psy17227        147 ------------TV-DHALKERFQDLK-------DGARIVSS  168 (268)
Q Consensus       147 ------------~~-~~~l~e~~r~Lk-------pGG~~i~~  168 (268)
                                  +. ...+..+++.||       |||++++.
T Consensus       320 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV  361 (530)
T 3ufb_A          320 ILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV  361 (530)
T ss_dssp             HHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred             ccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence                        11 112456667776       79998765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.59  E-value=9.6e-08  Score=74.55  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCCCC-HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         53 ATPDDVFVDLGSGVG-QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G-~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ..++.+|||||||.| ..+..++...|+. |+++|+++.                       .+.++++|+++... +..
T Consensus        33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~~-V~atDInp~-----------------------Av~~v~dDiF~P~~-~~Y   87 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFLYVSDYIRKHSKVD-LVLTDIKPS-----------------------HGGIVRDDITSPRM-EIY   87 (153)
T ss_dssp             SCSSSEEEEETCTTCCHHHHHHHHHSCCE-EEEECSSCS-----------------------STTEECCCSSSCCH-HHH
T ss_pred             CCCCCcEEEEccCCChHHHHHHHHhCCCe-EEEEECCcc-----------------------ccceEEccCCCCcc-ccc
Confidence            456679999999999 6999998878888 999999985                       11199999998443 222


Q ss_pred             cceEEEE-EeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVF-VNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~-~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++|+|. ++   -.+++...+.++.+..  |.-+++.
T Consensus        88 ~~~DLIYsir---PP~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           88 RGAALIYSIR---PPAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             TTEEEEEEES---CCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             CCcCEEEEcC---CCHHHHHHHHHHHHHc--CCCEEEE
Confidence            3677874 44   3477888888887654  4667765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.58  E-value=5.2e-08  Score=89.11  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh--ccccccEEEEEcCCCCC-cc-c
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY--GKRHGEFRLVKGDFLTE-EH-R  128 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~i~~~~gD~~~l-~~-~  128 (268)
                      +.+|.+|||+|||+|..++.+|+. +. +|+|||+|+.++.+++  ++++    ..  |.  .+++++++|+.+. +. .
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~-g~-~V~~VD~s~~~l~~Ar--~N~~----~~~~gl--~~i~~i~~Da~~~L~~~~  160 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK-AS-QGIYIERNDETAVAAR--HNIP----LLLNEG--KDVNILTGDFKEYLPLIK  160 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT-CS-EEEEEESCHHHHHHHH--HHHH----HHSCTT--CEEEEEESCGGGSHHHHH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc-CC-EEEEEECCHHHHHHHH--HhHH----HhccCC--CcEEEEECcHHHhhhhcc
Confidence            345899999999999999988764 44 5999999998655554  4443    23  33  4899999999874 42 1


Q ss_pred             ccccceEEEEEecc
Q psy17227        129 EKITQASIVFVNNF  142 (268)
Q Consensus       129 ~~~~d~dvv~~~~~  142 (268)
                      +.  .+|+|+++..
T Consensus       161 ~~--~fDvV~lDPP  172 (410)
T 3ll7_A          161 TF--HPDYIYVDPA  172 (410)
T ss_dssp             HH--CCSEEEECCE
T ss_pred             CC--CceEEEECCC
Confidence            22  4578888643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.57  E-value=4e-08  Score=84.71  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc--
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG--  120 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g--  120 (268)
                      .+.++.++..++++++|||||||+|+.+..++...+...|+|+|++..+...+..       ++  .. ..++.....  
T Consensus        78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-------~~--~~-g~~ii~~~~~~  147 (282)
T 3gcz_A           78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-------RT--TL-GWNLIRFKDKT  147 (282)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-------CC--BT-TGGGEEEECSC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-------cc--cC-CCceEEeeCCc
Confidence            3456777778899999999999999999988877787789999998652111100       00  00 113333333  


Q ss_pred             CCCCCcccccccceEEEEEeccccCc----CHHH---HHHHHHhcCCCC--cEEEEeCCCC
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGP----TVDH---ALKERFQDLKDG--ARIVSSKSFC  172 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~----~~~~---~l~e~~r~LkpG--G~~i~~~~~~  172 (268)
                      |+..++  .  ..+|+|++.......    |...   .+.-+.++||||  |.|++- -|+
T Consensus       148 dv~~l~--~--~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K-vF~  203 (282)
T 3gcz_A          148 DVFNME--V--IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK-VLC  203 (282)
T ss_dssp             CGGGSC--C--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ESC
T ss_pred             chhhcC--C--CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE-Eec
Confidence            433332  2  357889887653321    2111   233445799999  999983 444

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.54  E-value=3.9e-07  Score=75.49  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~  123 (268)
                      .+++.. .+.+.++||++|||  .-++.+|+.. ..+|+.||.++.....  ++++++    ..|.. ..+++++.||+.
T Consensus        21 ~~~L~~-~l~~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~--ar~~l~----~~g~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           21 AEALRM-AYEEAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARM--MKAWLA----ANPPAEGTEVNIVWTDIG   90 (202)
T ss_dssp             HHHHHH-HHHHCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHH--HHHHHH----HSCCCTTCEEEEEECCCS
T ss_pred             HHHHHH-HhhCCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHH--HHHHHH----HcCCCCCCceEEEEeCch
Confidence            344433 34567899999995  6777777633 3459999999863333  344444    34431 258999999976


Q ss_pred             CC---------------c-cc------ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TE---------------E-HR------EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l---------------~-~~------~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.               + +.      +....+|+||+.+-    .....+..+.+.|+|||++++-
T Consensus        91 ~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~----k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           91 PTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR----FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             SBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS----SHHHHHHHHHHHCSSCEEEEET
T ss_pred             hhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC----CchhHHHHHHHhcCCCeEEEEe
Confidence            42               2 11      11134788999753    3356677788999999999873

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.52  E-value=2.1e-07  Score=80.13  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHh-------C-----CcEEEEEeCCCCh-hHHHHHH-------HHHHHHHHHh-----
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAAT-------G-----CKICWGVEKADLP-AKYAEMH-------TVFKRWMQWY-----  108 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-------~-----~~~v~GiD~s~~~-~~~a~~~-------~~~~~~~~~~-----  108 (268)
                      +++.+|||||||+|..+..+++..       +     ...++++|..|.. ..++++.       ..+++.....     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            456799999999999988766543       3     1368999998821 1222111       1122211110     


Q ss_pred             -----cc--ccccEEEEEcCCCC-Cccccc--ccceEEEEEeccc--cCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        109 -----GK--RHGEFRLVKGDFLT-EEHREK--ITQASIVFVNNFA--FGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       109 -----~~--~~~~i~~~~gD~~~-l~~~~~--~~d~dvv~~~~~~--~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                           ..  ...+++++.||+.+ +|..+.  ...+|+|+...+.  ..|+  -...|..+++.|||||++++.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ty  212 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  212 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEES
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEE
Confidence                 01  12478899999987 453211  1257899988653  2333  356789999999999999974

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.52  E-value=6.6e-07  Score=80.92  Aligned_cols=122  Identities=11%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             HHHHHHHHcCCCC-----CCEEEEEcCCCCHHHHHHH--------HHh-------CCcEEEEEeCCCChhHHHHHHHHHH
Q psy17227         43 LISRMIDQINATP-----DDVFVDLGSGVGQVVLQVA--------AAT-------GCKICWGVEKADLPAKYAEMHTVFK  102 (268)
Q Consensus        43 ~~~~ll~~l~~~~-----~~~vLDiGCG~G~~~~~la--------~~~-------~~~~v~GiD~s~~~~~~a~~~~~~~  102 (268)
                      .+.+.++.+.+.+     ..+|+|+|||+|..++.++        +..       +.-.|..-|+...  +....-+.+.
T Consensus        35 ~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~N--DFn~lF~~L~  112 (374)
T 3b5i_A           35 LLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSN--DFNTLFQLLP  112 (374)
T ss_dssp             HHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTS--CHHHHHHHSC
T ss_pred             HHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCcc--chHHHHhhhh
Confidence            3444566665554     5789999999999998762        222       3335788888765  3221101100


Q ss_pred             HHHH-------Hhccccc--cEEEEEcCCCCCcccccccceEEEEEeccccC-c--------------------------
Q psy17227        103 RWMQ-------WYGKRHG--EFRLVKGDFLTEEHREKITQASIVFVNNFAFG-P--------------------------  146 (268)
Q Consensus       103 ~~~~-------~~~~~~~--~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-~--------------------------  146 (268)
                      ...+       ..+...+  =+.-+-|.+..-.|++++  +|+|+++..+|| .                          
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S--~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~  190 (374)
T 3b5i_A          113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART--IDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGE  190 (374)
T ss_dssp             CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTC--EEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCH
T ss_pred             hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcc--eEEEEecceeeeeccCchhhhccccccccCCceEeCCCCH
Confidence            0000       0000001  133445555555565654  567877777665 2                          


Q ss_pred             ------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        147 ------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       147 ------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                                  |+...|+..++.|||||+++++
T Consensus       191 ~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence                        2334577888999999999986

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.49  E-value=5.1e-07  Score=81.11  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      +++|++||||||++|+.+-.++++ |.. |+|||+.+-       ...+.        ..++|+++++|+..+..+.  .
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~-V~aVD~~~l-------~~~l~--------~~~~V~~~~~d~~~~~~~~--~  269 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR-NMW-VYSVDNGPM-------AQSLM--------DTGQVTWLREDGFKFRPTR--S  269 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT-TCE-EEEECSSCC-------CHHHH--------TTTCEEEECSCTTTCCCCS--S
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC-CCE-EEEEEhhhc-------Chhhc--------cCCCeEEEeCccccccCCC--C
Confidence            678999999999999999988775 554 999999872       11111        2468999999998876543  3


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      .+|+|++.+...+......+......+..++.++.
T Consensus       270 ~~D~vvsDm~~~p~~~~~l~~~wl~~~~~~~aI~~  304 (375)
T 4auk_A          270 NISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFN  304 (375)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHHHHHTTSCSEEEEE
T ss_pred             CcCEEEEcCCCChHHhHHHHHHHHhccccceEEEE
Confidence            57899998764333333333343334444444433

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.46  E-value=5.2e-07  Score=81.17  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc----cccEEEEEcCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR----HGEFRLVKGDF  122 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~i~~~~gD~  122 (268)
                      ....|+.+||++|||+.||.|+=+.++|...+...++++|+|+.  ++..+++++++    .+..    ..++.+.+.|.
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~--R~~~l~~~l~r----~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPS--RIARLQKILHS----YVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHH--HHHHHHHHHHH----HSCTTTTTSSSEEEECCCG
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHH--HHHHHHHHHHH----hhhhhhccCCceEEEeCch
Confidence            44457899999999999999999999988655556999999985  55555555553    2221    24799999999


Q ss_pred             CCCcccccccceEEEEEeccccC---------cC----------------HHHHHHHHHhcCCCCcEEE-EeCCCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNFAFG---------PT----------------VDHALKERFQDLKDGARIV-SSKSFCPL  174 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~---------~~----------------~~~~l~e~~r~LkpGG~~i-~~~~~~~~  174 (268)
                      .+++-.. ...+|.|++.+.|-.         ++                ..+.|....+.|||||++| +|=++.|.
T Consensus       214 ~~~~~~~-~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~  290 (359)
T 4fzv_A          214 RKWGELE-GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL  290 (359)
T ss_dssp             GGHHHHS-TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred             hhcchhc-cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence            8765211 124677887655422         11                0123456668899999988 44234443

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.46  E-value=4.5e-07  Score=78.46  Aligned_cols=83  Identities=14%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+++.++++++..+||.+||.|+.+..+++. +. +|+|+|.++.++..++  + +         ...+++++++|+.
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g-~VigiD~Dp~Ai~~A~--~-L---------~~~rv~lv~~~f~   76 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GG-RVIGLDQDPEAVARAK--G-L---------HLPGLTVVQGNFR   76 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TC-EEEEEESCHHHHHHHH--H-T---------CCTTEEEEESCGG
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CC-EEEEEeCCHHHHHHHH--h-h---------ccCCEEEEECCcc
Confidence            467888889999999999999999999999987 44 4999999997444433  2 2         1258999999999


Q ss_pred             CCcc--cc-cccceEEEEEe
Q psy17227        124 TEEH--RE-KITQASIVFVN  140 (268)
Q Consensus       124 ~l~~--~~-~~~d~dvv~~~  140 (268)
                      +++.  .. +...+|.|+++
T Consensus        77 ~l~~~L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           77 HLKRHLAALGVERVDGILAD   96 (285)
T ss_dssp             GHHHHHHHTTCSCEEEEEEE
T ss_pred             hHHHHHHHcCCCCcCEEEeC
Confidence            8762  11 12346777765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.45  E-value=1.3e-06  Score=73.32  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-C
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-D  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D  121 (268)
                      .+.++.++..++++++||||||++|+.+.+++...+..+|+|+|+-..-...-.+       .+..|  -..++|.++ |
T Consensus        66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~-------~~s~g--wn~v~fk~gvD  136 (267)
T 3p8z_A           66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP-------MSTYG--WNIVKLMSGKD  136 (267)
T ss_dssp             HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC-------CCCTT--TTSEEEECSCC
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch-------hhhcC--cCceEEEeccc
Confidence            4556777888999999999999999999988988888899999998730000000       00011  247999999 9


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHH----H---HHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVD----H---ALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~----~---~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      +..++.    ..+|+++|...--.+.+.    .   +|.-+.+.|++ |-|++ .-++|.
T Consensus       137 v~~~~~----~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py  190 (267)
T 3p8z_A          137 VFYLPP----EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPY  190 (267)
T ss_dssp             GGGCCC----CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCC
T ss_pred             eeecCC----ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCC
Confidence            766552    347888886543223321    2   33444578998 66665 446654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.43  E-value=1.2e-06  Score=75.80  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCCh----hHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLP----AKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .+..+.++..++++++||||||++|+.+.+++...|...|+|+|+-..-    ..+.             ......|.|+
T Consensus        82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~-------------ql~w~lV~~~  148 (321)
T 3lkz_A           82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQ-------------SYGWNIVTMK  148 (321)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCC-------------BTTGGGEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhh-------------hcCCcceEEE
Confidence            4556777888999999999999999999988888888899999998630    0000             0112359999


Q ss_pred             Ec-CCCCCcccccccceEEEEEeccccCcCHH----H---HHHHHHhcCCCC-cEEEEeCCCCC
Q psy17227        119 KG-DFLTEEHREKITQASIVFVNNFAFGPTVD----H---ALKERFQDLKDG-ARIVSSKSFCP  173 (268)
Q Consensus       119 ~g-D~~~l~~~~~~~d~dvv~~~~~~~~~~~~----~---~l~e~~r~LkpG-G~~i~~~~~~~  173 (268)
                      .+ |+..++.    ..+|+++|...--.+.+.    .   +|.-+.+.|++| |-|++ .-++|
T Consensus       149 ~~~Dv~~l~~----~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~p  207 (321)
T 3lkz_A          149 SGVDVFYRPS----ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCP  207 (321)
T ss_dssp             CSCCTTSSCC----CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCT
T ss_pred             eccCHhhCCC----CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCC
Confidence            99 9888764    246788876442223321    2   333445789998 77776 45665

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.38  E-value=1.4e-06  Score=76.13  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||=||-|.|+.++.+++..+..+|+.|||++..+.+++  +.+..... .....++++++.+|..+.- ......
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~--~~lp~~~~-~~~~dpRv~v~~~Dg~~~l-~~~~~~  157 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCR--QYLPNHNA-GSYDDPRFKLVIDDGVNFV-NQTSQT  157 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHH--HHCHHHHT-TGGGCTTEEEEESCTTTTT-SCSSCC
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHH--hcCccccc-cccCCCcEEEEechHHHHH-hhcccc
Confidence            3457899999999999999988767778999999998666654  33322110 1123568999999998743 122345


Q ss_pred             eEEEEEeccc-cCc-C---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFA-FGP-T---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~-~~~-~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+- ..+ .   -...++.+.+.|+|||++++-
T Consensus       158 yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          158 FDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             CCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            7899987551 111 1   245678899999999999964

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.19  E-value=6.1e-06  Score=71.62  Aligned_cols=116  Identities=9%  Similarity=-0.039  Sum_probs=67.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-C
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-D  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D  121 (268)
                      .+.++.++--++++.+||||||++|+.+..+++..+...|+|+|+...+.......         ......-+.+..+ |
T Consensus        69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~---------~~~~~~iv~~~~~~d  139 (300)
T 3eld_A           69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHM---------QTLGWNIVKFKDKSN  139 (300)
T ss_dssp             HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---------CBTTGGGEEEECSCC
T ss_pred             HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccc---------cccCCceEEeecCce
Confidence            34556666335689999999999999999887766777799999985310000000         0000112334333 4


Q ss_pred             CCCCcccccccceEEEEEeccccCcC----H---HHHHHHHHhcCCCC-cEEEEeCCCC
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPT----V---DHALKERFQDLKDG-ARIVSSKSFC  172 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~----~---~~~l~e~~r~LkpG-G~~i~~~~~~  172 (268)
                      +..++  .  ..+|+|+++.......    .   ...+.-+.++|+|| |.|++- .|+
T Consensus       140 i~~l~--~--~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K-vF~  193 (300)
T 3eld_A          140 VFTMP--T--EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK-VLA  193 (300)
T ss_dssp             TTTSC--C--CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE-ESS
T ss_pred             eeecC--C--CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE-ecc
Confidence            44433  2  2467888875533211    1   12233345799999 999974 344

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.16  E-value=9.3e-06  Score=70.61  Aligned_cols=119  Identities=12%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHh-----CCcEEEEEeCCCCh------------------------hH
Q psy17227         44 ISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAAT-----GCKICWGVEKADLP------------------------AK   93 (268)
Q Consensus        44 ~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~-----~~~~v~GiD~s~~~------------------------~~   93 (268)
                      +..+++.+. ......||++||..|..++.+|...     ...+++++|..+.+                        ..
T Consensus        94 L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~  173 (282)
T 2wk1_A           94 IRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVS  173 (282)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCC
T ss_pred             HHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhH
Confidence            344555542 2334579999999999999887643     13459999975431                        01


Q ss_pred             HHHHHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227         94 YAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus        94 ~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+++++    ...|....+++++.||+.+ +|-. ....+|++++.+-.+ ......|..++..|+|||.+++-
T Consensus       174 ~~~ar~n~----~~~gl~~~~I~li~Gda~etL~~~-~~~~~d~vfIDaD~y-~~~~~~Le~~~p~L~pGGiIv~D  243 (282)
T 2wk1_A          174 EEEVRRNF----RNYDLLDEQVRFLPGWFKDTLPTA-PIDTLAVLRMDGDLY-ESTWDTLTNLYPKVSVGGYVIVD  243 (282)
T ss_dssp             HHHHHHHH----HHTTCCSTTEEEEESCHHHHSTTC-CCCCEEEEEECCCSH-HHHHHHHHHHGGGEEEEEEEEES
T ss_pred             HHHHHHHH----HHcCCCcCceEEEEeCHHHHHhhC-CCCCEEEEEEcCCcc-ccHHHHHHHHHhhcCCCEEEEEc
Confidence            22233333    3455433689999999975 4421 113578888875311 22456788889999999999984

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.12  E-value=1.2e-05  Score=68.41  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~  122 (268)
                      +.++-++.-++||++||||||+.|+-+..++...+...|.|.++..+. .+.-+.        -....-.-+.|++| |+
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~--------~~~~Gv~~i~~~~G~Df  132 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPML--------MQSYGWNIVTMKSGVDV  132 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCC--------CCSTTGGGEEEECSCCG
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCc--------ccCCCceEEEeeccCCc
Confidence            345666656789999999999999999988776333223444443320 000000        00000012466668 99


Q ss_pred             CCCcccccccceEEEEEeccccCc----CHHH---HHHHHHhcCCCCc-EEEEeCCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGP----TVDH---ALKERFQDLKDGA-RIVSSKSFCP  173 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~----~~~~---~l~e~~r~LkpGG-~~i~~~~~~~  173 (268)
                      .+++  .  ..+|+|+|...-...    |...   ++.-+.++||||| -|++ .-|++
T Consensus       133 ~~~~--~--~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv-KVFqg  186 (269)
T 2px2_A          133 FYKP--S--EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI-KILCP  186 (269)
T ss_dssp             GGSC--C--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCT
T ss_pred             cCCC--C--CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE-EECCC
Confidence            8754  1  246889887542222    2121   3433447999999 8877 45664

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.02  E-value=7.9e-06  Score=74.02  Aligned_cols=110  Identities=12%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH-----------------hCCcEEEEEeCCCC-hhHHHHHHHHHH-HHHHHhccccccEE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA-----------------TGCKICWGVEKADL-PAKYAEMHTVFK-RWMQWYGKRHGEFR  116 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-----------------~~~~~v~GiD~s~~-~~~~a~~~~~~~-~~~~~~~~~~~~i~  116 (268)
                      ..+|+|+|||+|..++.++..                 .+.-.|+.-|+... --.+-+...... ...+..|.. .+--
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~-~~~~  131 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK-IGSC  131 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC-TTSE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC-CCce
Confidence            578999999999999877765                 12235788888643 111111111111 111122221 1234


Q ss_pred             EEEc---CCCCCcccccccceEEEEEeccccC-cCH----HH--------------------H---------------HH
Q psy17227        117 LVKG---DFLTEEHREKITQASIVFVNNFAFG-PTV----DH--------------------A---------------LK  153 (268)
Q Consensus       117 ~~~g---D~~~l~~~~~~~d~dvv~~~~~~~~-~~~----~~--------------------~---------------l~  153 (268)
                      |+.|   .+..-.|++++  +|+|+++..+|| .+.    ..                    +               |+
T Consensus       132 f~~gvpgSFy~rlfp~~S--~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          132 LIGAMPGSFYSRLFPEES--MHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             EEEECCSCTTSCCSCTTC--EEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhhhccCCCCc--eEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5554   44445566654  577888877666 221    10                    1               44


Q ss_pred             HHHhcCCCCcEEEEe
Q psy17227        154 ERFQDLKDGARIVSS  168 (268)
Q Consensus       154 e~~r~LkpGG~~i~~  168 (268)
                      ..++.|||||+++++
T Consensus       210 ~Ra~eL~pGG~mvl~  224 (384)
T 2efj_A          210 IHSEELISRGRMLLT  224 (384)
T ss_dssp             HHHHHEEEEEEEEEE
T ss_pred             HHHHHhccCCeEEEE
Confidence            557999999999986

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.98  E-value=1.1e-05  Score=70.52  Aligned_cols=54  Identities=26%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ....+.+++..+. .+|++|||++||+|.+++.++. .|.. ++|+|+++.++.+++
T Consensus       221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~-~g~~-~~g~e~~~~~~~~a~  274 (297)
T 2zig_A          221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAAR-WGRR-ALGVELVPRYAQLAK  274 (297)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHH-TTCE-EEEEESCHHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCe-EEEEeCCHHHHHHHH
Confidence            3456677777766 7899999999999999987554 5765 999999998666654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.85  E-value=3.1e-05  Score=68.57  Aligned_cols=86  Identities=14%  Similarity=0.265  Sum_probs=63.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +.++++.|.++||..++|..||.|+.+..+++..+ ..+|+|+|.++.++..++      +      +...+++++++++
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~------r------L~~~Rv~lv~~nF  113 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK------T------IDDPRFSIIHGPF  113 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT------T------CCCTTEEEEESCG
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH------h------hcCCcEEEEeCCH
Confidence            46788899999999999999999999999988764 447999999997433321      1      1235899999999


Q ss_pred             CCCc--ccc-ccc-ceEEEEEec
Q psy17227        123 LTEE--HRE-KIT-QASIVFVNN  141 (268)
Q Consensus       123 ~~l~--~~~-~~~-d~dvv~~~~  141 (268)
                      .++.  +.+ +.. .+|.|+.+.
T Consensus       114 ~~l~~~L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          114 SALGEYVAERDLIGKIDGILLDL  136 (347)
T ss_dssp             GGHHHHHHHTTCTTCEEEEEEEC
T ss_pred             HHHHHHHHhcCCCCcccEEEECC
Confidence            9875  111 111 367777663

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.78  E-value=2.5e-05  Score=70.39  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh--ccccccEEEEEcCCCCCc--ccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY--GKRHGEFRLVKGDFLTEE--HRE  129 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~i~~~~gD~~~l~--~~~  129 (268)
                      .+..+||=||-|.|+.++.+.+ ++..+|+.|||++..+.+++  +.+.......  ....++++++.+|..+.-  ...
T Consensus       204 ~~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar--~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCK--KYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHH--HHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHH--hhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            3567999999999999999876 45577999999997666654  2221100000  012246999999987532  112


Q ss_pred             cccceEEEEEecccc--CcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAF--GPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~--~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+|++..+-.  .+++         ...++.+.+.|+|||.++.-
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            223578999875421  1111         23456777899999999863

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.77  E-value=4.5e-05  Score=68.32  Aligned_cols=77  Identities=16%  Similarity=0.109  Sum_probs=58.5

Q ss_pred             CcHHHHHHHHHHcCCCC------CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc
Q psy17227         39 TSFDLISRMIDQINATP------DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH  112 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~------~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~  112 (268)
                      .....+.++++.+++.+      +++|||||.|.|.++..++......+|++||+++..+.      .+++.   .  ..
T Consensus        36 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~------~L~~~---~--~~  104 (353)
T 1i4w_A           36 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK------FLNAK---F--EG  104 (353)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH------HHHHH---T--TT
T ss_pred             CCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH------HHHHh---c--cC
Confidence            34567788999998874      58999999999999999998665556999999985222      22221   1  13


Q ss_pred             ccEEEEEcCCCCCc
Q psy17227        113 GEFRLVKGDFLTEE  126 (268)
Q Consensus       113 ~~i~~~~gD~~~l~  126 (268)
                      ++++++.+|+.++.
T Consensus       105 ~~l~ii~~D~l~~~  118 (353)
T 1i4w_A          105 SPLQILKRDPYDWS  118 (353)
T ss_dssp             SSCEEECSCTTCHH
T ss_pred             CCEEEEECCccchh
Confidence            68999999998765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.72  E-value=2.4e-05  Score=70.18  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH----------------hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE--
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA----------------TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL--  117 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~----------------~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~--  117 (268)
                      ..+|+|+||++|..++.+...                .+.-.|+.-|+...  +....-+.+..    .. ...+..|  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N--DFntlF~~L~~----~~-~~~~~~f~~  124 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN--DFNAIFRSLPI----EN-DVDGVCFIN  124 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS--CHHHHHTTTTT----SC-SCTTCEEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch--HHHHHHHhcch----hc-ccCCCEEEE
Confidence            467999999999877654332                12236899999876  33321111110    00 0012234  


Q ss_pred             -EEcCCCCCcccccccceEEEEEeccccC-cC---------------------------------HHHHHHHHHhcCCCC
Q psy17227        118 -VKGDFLTEEHREKITQASIVFVNNFAFG-PT---------------------------------VDHALKERFQDLKDG  162 (268)
Q Consensus       118 -~~gD~~~l~~~~~~~d~dvv~~~~~~~~-~~---------------------------------~~~~l~e~~r~LkpG  162 (268)
                       +-|.+..-.|+++++  |+++++..+|| .+                                 +...|+..++.|+||
T Consensus       125 gvpgSFy~rlfp~~S~--d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG  202 (359)
T 1m6e_X          125 GVPGSFYGRLFPRNTL--HFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG  202 (359)
T ss_dssp             EEESCSSSCCSCTTCB--SCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred             ecchhhhhccCCCCce--EEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             445666666777655  55777666555 22                                 122267778999999


Q ss_pred             cEEEEe
Q psy17227        163 ARIVSS  168 (268)
Q Consensus       163 G~~i~~  168 (268)
                      |+++++
T Consensus       203 G~mvl~  208 (359)
T 1m6e_X          203 GRMVLT  208 (359)
T ss_dssp             CEEEEE
T ss_pred             ceEEEE
Confidence            999986

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.50  E-value=0.0011  Score=57.34  Aligned_cols=122  Identities=14%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CccccccCCCCCCCCcccCcHHHH--HHHHHHcC-----CCCCCEEEEEcC------CCCHHHHHHHHHhCC-cEEEEEe
Q psy17227         21 EPEKLNVYQPFSPFVYGETSFDLI--SRMIDQIN-----ATPDDVFVDLGS------GVGQVVLQVAAATGC-KICWGVE   86 (268)
Q Consensus        21 ~~~~~~~y~~~~~~~~g~~~~~~~--~~ll~~l~-----~~~~~~vLDiGC------G~G~~~~~la~~~~~-~~v~GiD   86 (268)
                      +|=.+..|...-....|- ....+  .++++.++     ...|++|||+|+      -+|...  +.+..+. ..++++|
T Consensus        69 e~c~l~nyg~~~~lp~g~-~~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavD  145 (344)
T 3r24_A           69 EKCDLQNYGENAVIPKGI-MMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSD  145 (344)
T ss_dssp             CCCCCCCCSCCTTSCTTC-CHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEE
T ss_pred             cccccccCCCCCCCCCCc-EeeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEee
Confidence            455555665544434443 23322  34655553     456999999995      677742  2333333 2699999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccc----c-------CcCHHHHHHHH
Q psy17227         87 KADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFA----F-------GPTVDHALKER  155 (268)
Q Consensus        87 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~----~-------~~~~~~~l~e~  155 (268)
                      +.+-                   ....+ .+++||+..+...   ..+|+|++.+.-    +       ...+.....++
T Consensus       146 L~~~-------------------~sda~-~~IqGD~~~~~~~---~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdf  202 (344)
T 3r24_A          146 LNDF-------------------VSDAD-STLIGDCATVHTA---NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF  202 (344)
T ss_dssp             SSCC-------------------BCSSS-EEEESCGGGEEES---SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHH
T ss_pred             Cccc-------------------ccCCC-eEEEccccccccC---CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHH
Confidence            9984                   01123 4599998764432   357899986541    1       11233333344


Q ss_pred             -HhcCCCCcEEEEe
Q psy17227        156 -FQDLKDGARIVSS  168 (268)
Q Consensus       156 -~r~LkpGG~~i~~  168 (268)
                       .++|+|||.|++=
T Consensus       203 A~~~LkpGGsFvVK  216 (344)
T 3r24_A          203 IKQKLALGGSIAVK  216 (344)
T ss_dssp             HHHHEEEEEEEEEE
T ss_pred             HHHhCcCCCEEEEE
Confidence             4689999999974

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.42  E-value=0.00028  Score=60.32  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ...+.++++.. ..+|+.|||..||+|..++.+ ...|.. ++|+|+++..+.+++
T Consensus       199 ~~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a-~~~gr~-~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVA-KKLGRN-FIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHH-HHTTCE-EEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHH-HHcCCe-EEEEeCCHHHHHHHH
Confidence            44566677665 378999999999999999864 446765 999999997655554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.08  E-value=0.0013  Score=58.87  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +....++++|++||-+|||. |.++..+|+..|+.+|+++|.++.  +.+.    ++    ..|.   . .++..+-.++
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~--~~~~----a~----~lGa---~-~vi~~~~~~~  247 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES--RLEL----AK----QLGA---T-HVINSKTQDP  247 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHHH----HH----HHTC---S-EEEETTTSCH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHH----HH----HcCC---C-EEecCCccCH
Confidence            44667899999999999987 888899999889866999999975  2221    11    2332   1 1222211111


Q ss_pred             c--ccccc-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HREKI-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ..+.. ..+|+++-..-     ....+...++.|+|||+++..
T Consensus       248 ~~~~~~~~~gg~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          248 VAAIKEITDGGVNFALESTG-----SPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             HHHHHHHTTSCEEEEEECSC-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhcCCCCcEEEECCC-----CHHHHHHHHHHHhcCCEEEEe
Confidence            1  00000 13677764311     135678889999999999975

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.95  E-value=0.0031  Score=57.03  Aligned_cols=107  Identities=13%  Similarity=0.035  Sum_probs=66.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||-+|||. |.++..+|+..|+.+|+++|.++.  +++    .++    ..|     .+++.-+-.++
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~----~a~----~lG-----a~~i~~~~~~~  241 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE--RLK----LLS----DAG-----FETIDLRNSAP  241 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHH----HHH----TTT-----CEEEETTSSSC
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHH----HHH----HcC-----CcEEcCCCcch
Confidence            33667899999999999987 888999999899856999999975  221    111    223     12332221121


Q ss_pred             -c--ccc--cccceEEEEEeccccC---------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 -E--HRE--KITQASIVFVNNFAFG---------PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 -~--~~~--~~~d~dvv~~~~~~~~---------~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .  ..+  +...+|+++-..-...         .+....+...++.|+|||++++.
T Consensus       242 ~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          242 LRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence             1  000  0113677764322110         01234688889999999999875

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.90  E-value=0.0039  Score=53.19  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHH------HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH---h
Q psy17227          7 LRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLIS------RMIDQINATPDDVFVDLGSGVGQVVLQVAAA---T   77 (268)
Q Consensus         7 ~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~------~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~---~   77 (268)
                      .++|.+-+...-++.+++++.+.-|..       ...+.      .+.+++.--|| .|+++||-.|+.++.+|..   +
T Consensus        23 ~~~l~~~~~~~~~~~~e~l~~~~~~~~-------~~~l~~~l~~~~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l   94 (257)
T 3tos_A           23 TQRLTKLLTNSPIPTEELVNNLPLFLR-------RHQMTDLLSMDALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVY   94 (257)
T ss_dssp             HHHHHHHHHTCCSCGGGGGGCGGGGCC-------HHHHHHHHHHHHHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHhHHhhhh-------HHHHHHHHHHHHHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHh
Confidence            334444444444567888988866554       22222      34444433466 5999999999999887653   1


Q ss_pred             ----CCcEEEEEeCCCChhH---------------------HHH-HHHHHH--HHHHHhccccccEEEEEcCCCC-Cc-c
Q psy17227         78 ----GCKICWGVEKADLPAK---------------------YAE-MHTVFK--RWMQWYGKRHGEFRLVKGDFLT-EE-H  127 (268)
Q Consensus        78 ----~~~~v~GiD~s~~~~~---------------------~a~-~~~~~~--~~~~~~~~~~~~i~~~~gD~~~-l~-~  127 (268)
                          ...+|+|.|--+.+-.                     .+. ..+.++  +..+..+....+++++.|++.+ +| +
T Consensus        95 ~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~  174 (257)
T 3tos_A           95 EPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRY  174 (257)
T ss_dssp             CTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHH
Confidence                2356999993221110                     111 111111  0001123323689999999976 44 1


Q ss_pred             -cc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 -RE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 -~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+ +...+|++++..=. -......+..++..|+|||.+++-
T Consensus       175 l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~~GGvIv~D  216 (257)
T 3tos_A          175 LAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAFD  216 (257)
T ss_dssp             HHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             HHhCCCCceEEEEEcCcc-cchHHHHHHHHHHHhCCCcEEEEc
Confidence             11 12246788887431 123455688888999999999994

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.75  E-value=0.0015  Score=59.04  Aligned_cols=106  Identities=13%  Similarity=0.004  Sum_probs=66.5

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-C
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-E  125 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l  125 (268)
                      +...++++|++||-+|||. |.+++.+|+..|+.+|+++|.++.  +++.    ++    ..|.     +.+.-.-.+ +
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~--~~~~----a~----~lGa-----~~i~~~~~~~~  242 (398)
T 1kol_A          178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA--RLAH----AK----AQGF-----EIADLSLDTPL  242 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHH----HH----HTTC-----EEEETTSSSCH
T ss_pred             HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH--HHHH----HH----HcCC-----cEEccCCcchH
Confidence            3467899999999999976 888899999899867999999975  2221    11    2332     222211111 1


Q ss_pred             c--ccc--cccceEEEEEecc----------ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HRE--KITQASIVFVNNF----------AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~--~~~d~dvv~~~~~----------~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ..+  +...+|+|+-..-          .|.++....+....+.|++||++++.
T Consensus       243 ~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          243 HEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            1  000  0113677764321          12334456788999999999999875

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.69  E-value=0.0058  Score=53.45  Aligned_cols=114  Identities=19%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCCCHHHHHHH---HHh-CCc--EEEEEeCCCCh------hHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVA---AAT-GCK--ICWGVEKADLP------AKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la---~~~-~~~--~v~GiD~s~~~------~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ++.-+|||+|-|+|-......   .+. +..  ..+++|..+-.      ...+...+.+-..........-.+++..||
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            344579999999998654322   222 222  35778864310      011111111111000000011246788999


Q ss_pred             CCC-CcccccccceEEEEEeccc--cCcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLT-EEHREKITQASIVFVNNFA--FGPTV--DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~-l~~~~~~~d~dvv~~~~~~--~~~~~--~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+ ++--+ .+.+|+++...+.  ..|++  ...|+.+++.++|||+++++
T Consensus       175 a~~~l~~l~-~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY  225 (308)
T 3vyw_A          175 ARKRIKEVE-NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY  225 (308)
T ss_dssp             HHHHGGGCC-SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred             HHHHHhhhc-ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence            875 33211 2357999988763  33443  46789999999999999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.64  E-value=0.0048  Score=54.80  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=63.1

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-C
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-E  125 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l  125 (268)
                      +...++++|++||-+|||. |.++..+|+..|+.+|+++|.++.  +.+.    ++    ..|.   . .++..+-.+ .
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~----a~----~lGa---~-~vi~~~~~~~~  229 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT--RLSK----AK----EIGA---D-LVLQISKESPQ  229 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHH----HH----HTTC---S-EEEECSSCCHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHHH----HH----HhCC---C-EEEcCcccccc
Confidence            3667899999999999986 888889999889856999999874  2211    11    2332   1 122211000 0


Q ss_pred             ccccc----c-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREK----I-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~----~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+.    . ..+|+++-..-     ....+...++.|+|||+++..
T Consensus       230 ~~~~~i~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          230 EIARKVEGQLGCKPEVTIECTG-----AEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             HHHHHHHHHHTSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCCEEEECCC-----ChHHHHHHHHHhcCCCEEEEE
Confidence            10000    0 13566664211     134577888999999999975

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.61  E-value=0.0032  Score=50.88  Aligned_cols=97  Identities=18%  Similarity=0.255  Sum_probs=60.8

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||..|+  |.|..+..+++..|+. |++++.++.  ..+    .++    ..|.   ...+   |..+..
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~--~~~----~~~----~~g~---~~~~---d~~~~~   94 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDA--KRE----MLS----RLGV---EYVG---DSRSVD   94 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHH--HHH----HHH----TTCC---SEEE---ETTCST
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCE-EEEEeCCHH--HHH----HHH----HcCC---CEEe---eCCcHH
Confidence            4468899999999994  5677788888878886 999999864  111    111    1221   1111   333321


Q ss_pred             cccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+.      ...+|+++.+.-      ...+....+.|+|||+++..
T Consensus        95 ~~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A           95 FADEILELTDGYGVDVVLNSLA------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHHHHTTTCCEEEEEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCeEEEECCc------hHHHHHHHHHhccCCEEEEE
Confidence            1110      113677775432      24678888999999999975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.59  E-value=0.006  Score=54.56  Aligned_cols=101  Identities=20%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||=+|+|. |.+++.+|+..|+.+|+++|.++....++          +..|..    .++  |..+.
T Consensus       174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----------~~lGa~----~vi--~~~~~  237 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLA----------EEVGAT----ATV--DPSAG  237 (370)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH----------HHHTCS----EEE--CTTSS
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----------HHcCCC----EEE--CCCCc
Confidence            34777899999999999976 78888899989996699999997522211          123421    122  22221


Q ss_pred             ccccc--------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREK--------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~--------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+.        ...+|+++-. .    .....+....+.|+|||++++.
T Consensus       238 ~~~~~i~~~~~~~~gg~Dvvid~-~----G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          238 DVVEAIAGPVGLVPGGVDVVIEC-A----GVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             CHHHHHHSTTSSSTTCEEEEEEC-S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CHHHHHHhhhhccCCCCCEEEEC-C----CCHHHHHHHHHHhccCCEEEEE
Confidence            11000        0136777642 1    1245678889999999999986

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.59  E-value=0.0045  Score=54.78  Aligned_cols=97  Identities=14%  Similarity=0.070  Sum_probs=63.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...++++|++||-+|+|. |.++..+|+..|+. |++++.++.-..+++          +.|.  ..  ++ .|...
T Consensus       167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~----------~lGa--~~--v~-~~~~~  230 (348)
T 3two_A          167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE-VSVFARNEHKKQDAL----------SMGV--KH--FY-TDPKQ  230 (348)
T ss_dssp             HHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECSSSTTHHHHH----------HTTC--SE--EE-SSGGG
T ss_pred             HHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHH----------hcCC--Ce--ec-CCHHH
Confidence            345667899999999999986 88888999988985 999999986222221          2332  12  22 23211


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  ..   .+|+++-..- . +   ..+...++.|+|||+++..
T Consensus       231 ~--~~---~~D~vid~~g-~-~---~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          231 C--KE---ELDFIISTIP-T-H---YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             C--CS---CEEEEEECCC-S-C---CCHHHHHTTEEEEEEEEEC
T ss_pred             H--hc---CCCEEEECCC-c-H---HHHHHHHHHHhcCCEEEEE
Confidence            1  11   4677764211 1 1   2466788999999999986

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.58  E-value=0.0063  Score=53.61  Aligned_cols=101  Identities=23%  Similarity=0.265  Sum_probs=65.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...++++|++||-+|||. |.++..+|+..|+. |+++|.++.  +.+    .++    ..|.   .. ++  |..+
T Consensus       157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~--~~~----~~~----~lGa---~~-~i--~~~~  219 (340)
T 3s2e_A          157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLR-VAAVDIDDA--KLN----LAR----RLGA---EV-AV--NARD  219 (340)
T ss_dssp             HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCE-EEEEESCHH--HHH----HHH----HTTC---SE-EE--ETTT
T ss_pred             HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCHH--HHH----HHH----HcCC---CE-EE--eCCC
Confidence            345667899999999999986 89999999999985 999999975  221    111    2332   11 22  2222


Q ss_pred             Cccccc----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREK----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+.+.    ...+|+++-...     -...+....+.|+|||+++..
T Consensus       220 ~~~~~~~~~~~g~~d~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          220 TDPAAWLQKEIGGAHGVLVTAV-----SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             SCHHHHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             cCHHHHHHHhCCCCCEEEEeCC-----CHHHHHHHHHHhccCCEEEEe
Confidence            111111    113566664311     245678888999999999975

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.42  E-value=0.011  Score=53.11  Aligned_cols=73  Identities=18%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc------c
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE------K  130 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~------~  130 (268)
                      .+|+|+-||.|+++.-+.. .|...+.++|+++.+.      +.++.       ..++..++++|+.++...+      .
T Consensus         3 ~~vidLFsG~GGlslG~~~-aG~~~v~avE~d~~a~------~t~~~-------N~~~~~~~~~DI~~~~~~~~~~~~~~   68 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAAR-AGFDVKMAVEIDQHAI------NTHAI-------NFPRSLHVQEDVSLLNAEIIKGFFKN   68 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHH-HTCEEEEEECSCHHHH------HHHHH-------HCTTSEEECCCGGGCCHHHHHHHHCS
T ss_pred             CeEEEEccCcCHHHHHHHH-CCCcEEEEEeCCHHHH------HHHHH-------hCCCCceEecChhhcCHHHHHhhccc
Confidence            5899999999999987654 5887788999998522      22221       1246778999998875321      1


Q ss_pred             ccceEEEEEeccc
Q psy17227        131 ITQASIVFVNNFA  143 (268)
Q Consensus       131 ~~d~dvv~~~~~~  143 (268)
                      ..++|+++....|
T Consensus        69 ~~~~D~i~ggpPC   81 (376)
T 3g7u_A           69 DMPIDGIIGGPPC   81 (376)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             CCCeeEEEecCCC
Confidence            2357888876544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.013  Score=52.34  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=63.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-  124 (268)
                      +....++++|++||-+|+|. |.++..+|+..|+.+|+++|.++....+++          ..|.   . .++  |..+ 
T Consensus       184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----------~lGa---~-~vi--~~~~~  247 (374)
T 1cdo_A          184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----------VFGA---T-DFV--NPNDH  247 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----------HTTC---C-EEE--CGGGC
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----------HhCC---c-eEE--ecccc
Confidence            34567889999999999875 777888899889866999999986222221          2332   1 122  2211 


Q ss_pred             -Cccccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        125 -EEHREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       125 -l~~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                       ..+.+.     ...+|+++-..-     ....+...++.|+|| |+++..
T Consensus       248 ~~~~~~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          248 SEPISQVLSKMTNGGVDFSLECVG-----NVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SSCHHHHHHHHHTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             chhHHHHHHHHhCCCCCEEEECCC-----CHHHHHHHHHHhhcCCcEEEEE
Confidence             011010     013566664211     135678889999999 999975

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.37  E-value=0.0074  Score=47.20  Aligned_cols=112  Identities=17%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ...+.+..--+|. |||+|=|+|+.--++...++...++.+|-.-...-               ....+.-.++.||+.+
T Consensus        31 ~~a~~~v~~~~Gp-VlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp---------------~~~P~~e~~ilGdi~~   94 (174)
T 3iht_A           31 EHAIAQTAGLSGP-VYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP---------------DSTPPEAQLILGDIRE   94 (174)
T ss_dssp             HHHHHHTTTCCSC-EEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG---------------GGCCCGGGEEESCHHH
T ss_pred             HHHHHHhcCCCCc-eEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCC---------------CCCCchHheecccHHH
Confidence            3455555555666 99999999999999988888888999998642000               0123455689999876


Q ss_pred             -CcccccccceEEEEEecc--ccCcCHHHHH----HHH-HhcCCCCcEEEEeCCCC
Q psy17227        125 -EEHREKITQASIVFVNNF--AFGPTVDHAL----KER-FQDLKDGARIVSSKSFC  172 (268)
Q Consensus       125 -l~~~~~~~d~dvv~~~~~--~~~~~~~~~l----~e~-~r~LkpGG~~i~~~~~~  172 (268)
                       +|.....+-..+.+++.=  .+.++...++    ..+ ..+|.|||.+++..++.
T Consensus        95 tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~  150 (174)
T 3iht_A           95 TLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY  150 (174)
T ss_dssp             HHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred             HHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence             443211122335555432  3444444443    333 36999999999975553

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.36  E-value=0.014  Score=52.20  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC--CC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD--FL  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD--~~  123 (268)
                      +....++++|++||=+|+|. |.++..+|+..|+.+|+++|.++.-..+++          +.|..    .++.-.  -.
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----------~lGa~----~vi~~~~~~~  250 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----------KFGVN----EFVNPKDHDK  250 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----------TTTCC----EEECGGGCSS
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----------HcCCc----EEEccccCch
Confidence            44667899999999999974 888889999899856999999986222221          23321    122111  11


Q ss_pred             CCc-----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        124 TEE-----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       124 ~l~-----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      ++.     ....  .+|+++-..     .-...+....+.|+|| |++++.
T Consensus       251 ~~~~~i~~~~~g--g~D~vid~~-----g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          251 PIQEVIVDLTDG--GVDYSFECI-----GNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             CHHHHHHHHTTS--CBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHhcCC--CCCEEEECC-----CCHHHHHHHHHHhhccCCEEEEE
Confidence            111     0011  356666421     1235678889999997 999976

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.35  E-value=0.013  Score=51.57  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCC--CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSG--VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG--~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+....++++|++||-+|||  .|..+..+|+..|+. |++++.++.....++          +.|.   .. .+  |..
T Consensus       135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~~~~----------~lga---~~-~~--~~~  197 (340)
T 3gms_A          135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFR-LIAVTRNNKHTEELL----------RLGA---AY-VI--DTS  197 (340)
T ss_dssp             HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHH----------HHTC---SE-EE--ETT
T ss_pred             HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH----------hCCC---cE-EE--eCC
Confidence            34566789999999999987  688899999989985 999999986222221          1232   11 22  222


Q ss_pred             CCcccc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHRE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.+      +...+|+++-+.-      .....+..+.|+|||+++..
T Consensus       198 ~~~~~~~~~~~~~~~g~Dvvid~~g------~~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          198 TAPLYETVMELTNGIGADAAIDSIG------GPDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             TSCHHHHHHHHTTTSCEEEEEESSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred             cccHHHHHHHHhCCCCCcEEEECCC------ChhHHHHHHHhcCCCEEEEE
Confidence            221111      0124677764322      12234455899999999986

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.29  E-value=0.017  Score=51.44  Aligned_cols=103  Identities=16%  Similarity=0.059  Sum_probs=63.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC-C-C
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD-F-L  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD-~-~  123 (268)
                      +....++++|++||-+|||. |.+++.+|+..|+.+|+++|.++....+++          ..|.   . .++.-+ . .
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----------~lGa---~-~vi~~~~~~~  248 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----------ELGA---T-ECLNPKDYDK  248 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----------HTTC---S-EEECGGGCSS
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----------HcCC---c-EEEecccccc
Confidence            44567899999999999875 777888899889866999999986222221          2332   1 122111 0 1


Q ss_pred             CCc--ccccc-cceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        124 TEE--HREKI-TQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       124 ~l~--~~~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      ++.  ...-. ..+|+++-..-     ....+...++.|+|| |+++..
T Consensus       249 ~~~~~i~~~t~gg~Dvvid~~g-----~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          249 PIYEVICEKTNGGVDYAVECAG-----RIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCCEEEECCC-----CHHHHHHHHHHHhcCCCEEEEE
Confidence            111  00000 13566664211     135678888999999 999975

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.25  E-value=0.016  Score=51.70  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCC-C
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDF-L  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~-~  123 (268)
                      +....++++|++||-+|+|. |.++..+|+..|+.+|+++|.++....+++          ..|..    .++. .+. .
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~----------~lGa~----~vi~~~~~~~  247 (373)
T 2fzw_A          182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----------EFGAT----ECINPQDFSK  247 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----------HHTCS----EEECGGGCSS
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----------HcCCc----eEeccccccc
Confidence            34566889999999999875 777888888889866999999986222221          22321    1121 110 1


Q ss_pred             CCc--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        124 TEE--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       124 ~l~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      ++.  ...- ...+|+++-..-     ....+...++.|+|| |+++..
T Consensus       248 ~~~~~v~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          248 PIQEVLIEMTDGGVDYSFECIG-----NVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cHHHHHHHHhCCCCCEEEECCC-----cHHHHHHHHHhhccCCcEEEEE
Confidence            111  0000 013566664211     135678889999999 999975

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.23  E-value=0.017  Score=51.49  Aligned_cols=103  Identities=15%  Similarity=0.026  Sum_probs=62.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC--C
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF--L  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~--~  123 (268)
                      +....++++|++||-+|+|. |.++..+|+..|+.+|+++|.++....+++          ..|.   . .++..+-  .
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----------~lGa---~-~vi~~~~~~~  248 (374)
T 2jhf_A          183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----------EVGA---T-ECVNPQDYKK  248 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----------HTTC---S-EEECGGGCSS
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----------HhCC---c-eEecccccch
Confidence            33556889999999999876 777888888889856999999986222221          2332   1 1221110  1


Q ss_pred             CCc--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        124 TEE--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       124 ~l~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      ++.  ...- ...+|+++-..-     ....+...++.|++| |+++..
T Consensus       249 ~~~~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          249 PIQEVLTEMSNGGVDFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCcEEEECCC-----CHHHHHHHHHHhhcCCcEEEEe
Confidence            111  0000 013566664211     135678888999999 999975

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.16  E-value=0.02  Score=51.07  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-  124 (268)
                      +....++++|++||-+|+|. |.+++.+|+..|+.+|+++|.++....+++          ..|.   . .++  |..+ 
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----------~lGa---~-~vi--~~~~~  250 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----------ALGA---T-DCL--NPREL  250 (376)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----------HTTC---S-EEE--CGGGC
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----------HhCC---c-EEE--ccccc
Confidence            34567889999999999875 777888899889866999999986222221          2332   1 112  2211 


Q ss_pred             -Cccccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        125 -EEHREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       125 -l~~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                       -++.+.     ...+|+++-. .    .-...+...++.|++| |+++..
T Consensus       251 ~~~~~~~v~~~~~~g~Dvvid~-~----G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          251 DKPVQDVITELTAGGVDYSLDC-A----GTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SSCHHHHHHHHHTSCBSEEEES-S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cchHHHHHHHHhCCCccEEEEC-C----CCHHHHHHHHHHhhcCCCEEEEE
Confidence             011000     0135666642 1    1135678889999999 999975

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.11  E-value=0.0098  Score=52.20  Aligned_cols=101  Identities=22%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             HHHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+.+..++++|++||-.||  |.|..+..+++..|+. |++++.++.  +.+.    +.   +..|.   .. .+  |..
T Consensus       140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~---~~~g~---~~-~~--~~~  203 (336)
T 4b7c_A          140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR-VVGIAGGAE--KCRF----LV---EELGF---DG-AI--DYK  203 (336)
T ss_dssp             HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH---HTTCC---SE-EE--ETT
T ss_pred             HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH---HHcCC---CE-EE--ECC
Confidence            3446778999999999998  6788899999888985 999999874  2211    10   12232   11 12  222


Q ss_pred             CCccccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.+.     ...+|+++-+.-      ...+....+.|+|||+++..
T Consensus       204 ~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          204 NEDLAAGLKRECPKGIDVFFDNVG------GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             TSCHHHHHHHHCTTCEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CHHHHHHHHHhcCCCceEEEECCC------cchHHHHHHHHhhCCEEEEE
Confidence            2221111     013677765322      24688888999999999975

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.11  E-value=0.0059  Score=54.11  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||=+|+|. |.++..+|+..|..+|+++|.++.  +.+    .++    +.|..    .++..+-.++
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~----~~~----~lGa~----~vi~~~~~~~  223 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH--CCD----IAL----EYGAT----DIINYKNGDI  223 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH--HHH----HHH----HHTCC----EEECGGGSCH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HHH----HHH----HhCCc----eEEcCCCcCH
Confidence            45778899999999999986 778888899889855999999874  221    111    23321    1222111111


Q ss_pred             c--ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ..+  +...+|+++-. . -   -...+...++.|+|||+++..
T Consensus       224 ~~~v~~~t~g~g~D~v~d~-~-g---~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          224 VEQILKATDGKGVDKVVIA-G-G---DVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             HHHHHHHTTTCCEEEEEEC-S-S---CTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHcCCCCCCEEEEC-C-C---ChHHHHHHHHHHhcCCEEEEe
Confidence            1  000  01136777642 2 1   124677888999999999976

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.10  E-value=0.021  Score=50.48  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=63.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC-CCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD-FLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD-~~~  124 (268)
                      .+...++++|++||-+|+|. |.++..+|+..|+. |+++|.++.  +.+    .++    ..|.   . .++..+ -.+
T Consensus       160 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~--~~~----~~~----~lGa---~-~~~~~~~~~~  224 (352)
T 1e3j_A          160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPR--RLE----VAK----NCGA---D-VTLVVDPAKE  224 (352)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--HHH----HHH----HTTC---S-EEEECCTTTS
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHH--HHH----HHH----HhCC---C-EEEcCccccc
Confidence            34667899999999999875 77788888888987 999999874  221    111    2332   1 122211 011


Q ss_pred             Cc--cccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  ..+.     ...+|+++-..-     ....+....+.|+|||+++..
T Consensus       225 ~~~~i~~~~~~~~g~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          225 EESSIIERIRSAIGDLPNVTIDCSG-----NEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CHHHHHHHHHHHSSSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHhccccCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            11  1000     013567664311     134577888999999999975

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.03  E-value=0.075  Score=46.96  Aligned_cols=116  Identities=11%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH---HHHHhcc------------ccccEEEE
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR---WMQWYGK------------RHGEFRLV  118 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~---~~~~~~~------------~~~~i~~~  118 (268)
                      .+...|+.||||.......+....+...++-||. |+.+...+  +.+.+   .+...|.            ...+.+++
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~--~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v  172 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKN--SILRESEILRISLGLSKEDTAKSPFLIDQGRYKLA  172 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHH--HHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHH--HHhhhccchhhhcccccccccccccccCCCceEEE
Confidence            4567899999999999998876544445788888 33222221  22221   0001110            12579999


Q ss_pred             EcCCCCCcc-----cc--cccceEEEEEeccc--cCcC-HHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        119 KGDFLTEEH-----RE--KITQASIVFVNNFA--FGPT-VDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       119 ~gD~~~l~~-----~~--~~~d~dvv~~~~~~--~~~~-~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      .+|+.+...     ..  +....++++++.++  +.++ ....++.+.+.. |||.+++.+.+.|
T Consensus       173 ~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~  236 (334)
T 1rjd_A          173 ACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG  236 (334)
T ss_dssp             ECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred             ecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence            999998532     11  11224577777663  3444 334455555555 7888877666554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.99  E-value=0.014  Score=51.14  Aligned_cols=99  Identities=23%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +....++++|++||-.||  |.|..+..+++..|+. |+++|.++.  ..+.    ++    ..|.   ...+   |..+
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~--~~~~----~~----~~g~---~~~~---d~~~  199 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDE--KIAY----LK----QIGF---DAAF---NYKT  199 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HTTC---SEEE---ETTS
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----hcCC---cEEE---ecCC
Confidence            445678999999999998  6788888888888885 999999864  2211    11    1221   1112   3332


Q ss_pred             -Cccccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 -EEHREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 -l~~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       -.+.+.     ...+|+++.+.-      ...+...++.|+|||+++..
T Consensus       200 ~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          200 VNSLEEALKKASPDGYDCYFDNVG------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCeEEEECCC------hHHHHHHHHHHhcCCEEEEE
Confidence             111010     013677765432      13578888999999999875

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.98  E-value=0.0046  Score=54.97  Aligned_cols=72  Identities=11%  Similarity=0.098  Sum_probs=47.5

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhC--CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATG--CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQ  133 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~--~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d  133 (268)
                      .+|+|+-||.|++...+.. .|  ...|+++|+++.+...      ++.   +    .++..++++|+.++...+- ..+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~-~G~~~~~v~~~E~d~~a~~~------~~~---N----~~~~~~~~~Di~~~~~~~~~~~~   68 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRE-SCIPAQVVAAIDVNTVANEV------YKY---N----FPHTQLLAKTIEGITLEEFDRLS   68 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHH-HTCSEEEEEEECCCHHHHHH------HHH---H----CTTSCEECSCGGGCCHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHH-CCCCceEEEEEeCCHHHHHH------HHH---h----ccccccccCCHHHccHhHcCcCC
Confidence            5799999999999987765 46  4568999999863222      221   1    2245588999988652110 014


Q ss_pred             eEEEEEecc
Q psy17227        134 ASIVFVNNF  142 (268)
Q Consensus       134 ~dvv~~~~~  142 (268)
                      +|+++....
T Consensus        69 ~D~l~~gpP   77 (343)
T 1g55_A           69 FDMILMSPP   77 (343)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEEcCC
Confidence            678876544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.018  Score=50.86  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=63.5

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...++++|++||-+|+  |.|..+..+++..|.. |++++.++..  .+.    ++    ..|.   .. ++  |..+
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-V~~~~~~~~~--~~~----~~----~~g~---~~-~~--d~~~  223 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR-VLGIDGGEGK--EEL----FR----SIGG---EV-FI--DFTK  223 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSTTH--HHH----HH----HTTC---CE-EE--ETTT
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCc-EEEEcCCHHH--HHH----HH----HcCC---ce-EE--ecCc
Confidence            445568899999999998  5788888888888885 9999998862  221    11    1221   11 11  4331


Q ss_pred             -Ccccccc-----cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 -EEHREKI-----TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 -l~~~~~~-----~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ..+.+..     ..+|+++.+.-     ....+....+.|++||+++..
T Consensus       224 ~~~~~~~~~~~~~~~~D~vi~~~g-----~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          224 EKDIVGAVLKATDGGAHGVINVSV-----SEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CSCHHHHHHHHHTSCEEEEEECSS-----CHHHHHHHTTSEEEEEEEEEC
T ss_pred             cHhHHHHHHHHhCCCCCEEEECCC-----cHHHHHHHHHHHhcCCEEEEE
Confidence             1111100     03677765422     235678889999999999975

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.0099  Score=53.17  Aligned_cols=100  Identities=16%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+..+++++|++||-+|+|. |.++..+|+..|+. |++++.++.....++          +.|..    .++  |..+.
T Consensus       186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-Vi~~~~~~~~~~~a~----------~lGa~----~vi--~~~~~  248 (369)
T 1uuf_A          186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAAK----------ALGAD----EVV--NSRNA  248 (369)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHH----------HHTCS----EEE--ETTCH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH----------HcCCc----EEe--ccccH
Confidence            44556899999999999985 78888899888987 999999986222221          22321    112  22221


Q ss_pred             ccccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+... ...+|+++-..- . +   ..+....+.|+|||+++..
T Consensus       249 ~~~~~~~~g~Dvvid~~g-~-~---~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          249 DEMAAHLKSFDFILNTVA-A-P---HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             HHHHTTTTCEEEEEECCS-S-C---CCHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhhcCCCEEEECCC-C-H---HHHHHHHHHhccCCEEEEe
Confidence            11000 124677764321 1 1   2356778999999999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.87  E-value=0.013  Score=50.93  Aligned_cols=94  Identities=17%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||=+|+|. |.++..+|+..|+. |++++ |+.-..+++          +.|.    -.++. |..++
T Consensus       134 al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~-Vi~~~-~~~~~~~~~----------~lGa----~~v~~-d~~~v  196 (315)
T 3goh_A          134 AFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYV-VDLVS-ASLSQALAA----------KRGV----RHLYR-EPSQV  196 (315)
T ss_dssp             HHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCE-EEEEC-SSCCHHHHH----------HHTE----EEEES-SGGGC
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEE-ChhhHHHHH----------HcCC----CEEEc-CHHHh
Confidence            33677899999999999974 88889999999994 99999 876222221          2332    12222 31112


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                           ...+|+++-. .  .   ...+....+.|+|||+++..
T Consensus       197 -----~~g~Dvv~d~-~--g---~~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          197 -----TQKYFAIFDA-V--N---SQNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             -----CSCEEEEECC-------------TTGGGEEEEEEEEEE
T ss_pred             -----CCCccEEEEC-C--C---chhHHHHHHHhcCCCEEEEE
Confidence                 1246776632 1  0   11235667999999999976

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.85  E-value=0.023  Score=51.63  Aligned_cols=68  Identities=13%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHH-HHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc-ccEEEEEcCCCC
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVA-AATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH-GEFRLVKGDFLT  124 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la-~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~i~~~~gD~~~  124 (268)
                      .++++++|+||||+.|..+..++ +..+. .+|+++|.+|.  ..+..+++++.+ . .+ .. .++++++.-+.+
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~--~~~~L~~n~~~~-~-N~-~~~~~v~~~~~al~~  293 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI--NLQTLQNVLRRY-T-DT-NFASRITVHGCGAGE  293 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH--HHHHHHHHHHHT-T-TS-TTGGGEEEECSEECS
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHHhh-h-cc-CCCCCEEEEEeEEEC
Confidence            46899999999999999999888 44543 57999999996  333233333210 0 01 12 578887766654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.84  E-value=0.032  Score=49.45  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||=+|+|. |.+++.+|+..|+..|+++|.++.-..++      ++    .+  ..-+.+...+....
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a------~~----l~--~~~~~~~~~~~~~~  238 (363)
T 3m6i_A          171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA------KE----IC--PEVVTHKVERLSAE  238 (363)
T ss_dssp             HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH------HH----HC--TTCEEEECCSCCHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH------HH----hc--hhcccccccccchH
Confidence            44677899999999999976 88888999988987799999997522221      11    11  11222221111111


Q ss_pred             cccc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+      +...+|+++-. .    .-...+....+.|+|||+++..
T Consensus       239 ~~~~~v~~~t~g~g~Dvvid~-~----g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          239 ESAKKIVESFGGIEPAVALEC-T----GVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             HHHHHHHHHTSSCCCSEEEEC-S----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHhCCCCCCEEEEC-C----CChHHHHHHHHHhcCCCEEEEE
Confidence            1101      01135666642 1    1234678888999999999986

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.72  E-value=0.016  Score=50.91  Aligned_cols=53  Identities=23%  Similarity=0.184  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ...+.+++... ..+|+.|||--||+|..+.. |...|.. ++|+|+++....+++
T Consensus       239 ~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~a-a~~~gr~-~ig~e~~~~~~~~~~  291 (323)
T 1boo_A          239 AKLPEFFIRML-TEPDDLVVDIFGGSNTTGLV-AERESRK-WISFEMKPEYVAASA  291 (323)
T ss_dssp             THHHHHHHHHH-CCTTCEEEETTCTTCHHHHH-HHHTTCE-EEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHH-HHHcCCC-EEEEeCCHHHHHHHH
Confidence            45566777654 57899999999999999975 5556766 999999997555544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.65  E-value=0.023  Score=50.31  Aligned_cols=99  Identities=13%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             HHHcCCCCC------CEEEEEcCCC-CHHH-HHHH-HHhCCcEEEEEeCCCC---hhHHHHHHHHHHHHHHHhccccccE
Q psy17227         48 IDQINATPD------DVFVDLGSGV-GQVV-LQVA-AATGCKICWGVEKADL---PAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        48 l~~l~~~~~------~~vLDiGCG~-G~~~-~~la-~~~~~~~v~GiD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      +...++++|      ++||=+|+|. |.++ ..+| +..|+.+|++++.++.   ...+++          +.|.     
T Consensus       159 l~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----------~lGa-----  223 (357)
T 2b5w_A          159 LEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----------ELDA-----  223 (357)
T ss_dssp             HHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----------HTTC-----
T ss_pred             HHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----------HcCC-----
Confidence            356678899      9999999854 6667 7778 7778866999999874   222222          2232     


Q ss_pred             EEEEcCCCCCcccc---cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        116 RLVKGDFLTEEHRE---KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l~~~~---~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+  |..+..+.+   -...+|+++-. .    .-...+...++.|+|||+++..
T Consensus       224 ~~v--~~~~~~~~~i~~~~gg~Dvvid~-~----g~~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          224 TYV--DSRQTPVEDVPDVYEQMDFIYEA-T----GFPKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             EEE--ETTTSCGGGHHHHSCCEEEEEEC-S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ccc--CCCccCHHHHHHhCCCCCEEEEC-C----CChHHHHHHHHHHhcCCEEEEE
Confidence            222  333222111   00136777642 1    1134678888999999999975

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.58  E-value=0.016  Score=51.50  Aligned_cols=99  Identities=16%  Similarity=0.035  Sum_probs=62.2

Q ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      +..++++|++||=+|||. |.++..+|+..|+. |++++.++.  +.+.    ++    ..|.   . .++..+-.++. 
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~-Vi~~~~~~~--~~~~----~~----~lGa---~-~vi~~~~~~~~~  247 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAE-VIVTSSSRE--KLDR----AF----ALGA---D-HGINRLEEDWVE  247 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HH----HHTC---S-EEEETTTSCHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEecCch--hHHH----HH----HcCC---C-EEEcCCcccHHH
Confidence            567899999999999886 78888889988985 999999874  2221    11    2332   1 12222212211 


Q ss_pred             -ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 -HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 -~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ...  +...+|+++-..-   .   ..+....+.|+|||+++..
T Consensus       248 ~v~~~~~g~g~D~vid~~g---~---~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          248 RVYALTGDRGADHILEIAG---G---AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             HHHHHHTTCCEEEEEEETT---S---SCHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhCCCCceEEEECCC---h---HHHHHHHHHhhcCCEEEEE
Confidence             000  1114677765322   1   2466778899999999976

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.53  E-value=0.052  Score=47.68  Aligned_cols=100  Identities=21%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||-+|+| .|.++..+|+..|.. |++++.++.  ..+.    ++    ..|.   . .+  .|..+.
T Consensus       156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~lGa---~-~~--~d~~~~  218 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDE--KLEL----AK----ELGA---D-LV--VNPLKE  218 (339)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHH--HHHH----HH----HTTC---S-EE--ECTTTS
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HH----HCCC---C-EE--ecCCCc
Confidence            4455689999999999996 478888888888885 999999874  2211    11    2332   1 11  143322


Q ss_pred             cccccc----cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKI----TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~----~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.+..    ..+|+++-..-     ....+....+.|++||+++..
T Consensus       219 ~~~~~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          219 DAAKFMKEKVGGVHAAVVTAV-----SKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             CHHHHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             cHHHHHHHHhCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEe
Confidence            211110    24677764321     134678888999999999975

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.49  E-value=0.037  Score=48.59  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=42.9

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC---ChhHHHH
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD---LPAKYAE   96 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~---~~~~~a~   96 (268)
                      ......+.+++... ..+|+.|||--||+|..+.. |...|.. .+|+|+++   ....+++
T Consensus       226 ~kp~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~a-a~~~~r~-~ig~e~~~~~~~~~~~~~  284 (319)
T 1eg2_A          226 QKPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARV-AIQEGRN-SICTDAAPVFKEYYQKQL  284 (319)
T ss_dssp             CCCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHH-HHHHTCE-EEEEESSTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh-CCCCCEEEecCCCCCHHHHH-HHHcCCc-EEEEECCccHHHHHHHHH
Confidence            34456677777765 47899999999999999985 4456766 99999999   7555543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.48  E-value=0.022  Score=50.25  Aligned_cols=70  Identities=20%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      +.+|+|+.||.|++...+.. .|...+.++|+++.+...      ++.   +.+    ..  .++|+.++... ...++|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~-aG~~~v~~~e~d~~a~~t------~~~---N~~----~~--~~~Di~~~~~~-~~~~~D   73 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEV------YEM---NFG----EK--PEGDITQVNEK-TIPDHD   73 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHH------HHH---HHS----CC--CBSCGGGSCGG-GSCCCS
T ss_pred             CCcEEEECCCcCHHHHHHHH-CCCeEEEEEeCCHHHHHH------HHH---HcC----CC--CcCCHHHcCHh-hCCCCC
Confidence            56899999999999987654 688888999999862222      221   111    11  17898876532 223578


Q ss_pred             EEEEecc
Q psy17227        136 IVFVNNF  142 (268)
Q Consensus       136 vv~~~~~  142 (268)
                      +++....
T Consensus        74 ~l~~gpP   80 (327)
T 2c7p_A           74 ILCAGFP   80 (327)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            8886644

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.45  E-value=0.037  Score=48.38  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      ++|||+=||.|++..-+ ...|...+.++|+++.+..      .++.   +     -.-.++++|+.++... ...++|+
T Consensus         1 mkvidLFsG~GG~~~G~-~~aG~~~v~a~e~d~~a~~------ty~~---N-----~~~~~~~~DI~~i~~~-~~~~~D~   64 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGF-QKAGFRIICANEYDKSIWK------TYES---N-----HSAKLIKGDISKISSD-EFPKCDG   64 (331)
T ss_dssp             CEEEEESCTTCHHHHHH-HHTTCEEEEEEECCTTTHH------HHHH---H-----CCSEEEESCGGGCCGG-GSCCCSE
T ss_pred             CeEEEeCcCccHHHHHH-HHCCCEEEEEEeCCHHHHH------HHHH---H-----CCCCcccCChhhCCHh-hCCcccE
Confidence            47999999999998765 4568887899999997332      2221   1     1236789999987643 3346788


Q ss_pred             EEEec
Q psy17227        137 VFVNN  141 (268)
Q Consensus       137 v~~~~  141 (268)
                      ++...
T Consensus        65 l~ggp   69 (331)
T 3ubt_Y           65 IIGGP   69 (331)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            77543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.40  E-value=0.031  Score=49.05  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +....++++|++||-.||  |.|..+..+++..|+. |++++.++.  +.+.    +++   ..|.   ...+   |..+
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~-V~~~~~~~~--~~~~----~~~---~~g~---~~~~---d~~~  210 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCY-VVGSAGSKE--KVDL----LKT---KFGF---DDAF---NYKE  210 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HHH---TSCC---SEEE---ETTS
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HHH---HcCC---ceEE---ecCC
Confidence            335678999999999997  6788888888888885 999999864  2211    110   1221   1112   3322


Q ss_pred             ---Cc--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 ---EE--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 ---l~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                         +.  .... ...+|+++-+.-      ...+....+.|+|||+++..
T Consensus       211 ~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          211 ESDLTAALKRCFPNGIDIYFENVG------GKMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             CSCSHHHHHHHCTTCEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCcEEEECCC------HHHHHHHHHHHhcCCEEEEE
Confidence               11  0000 013677765422      14678888999999999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.33  E-value=0.029  Score=49.42  Aligned_cols=98  Identities=16%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||=.|+  |.|.++..+|+..|+. |++++.++.....++          +.|.   . .++..+ .++.
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~~~~----------~~ga---~-~v~~~~-~~~~  216 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAK-VIAVVNRTAATEFVK----------SVGA---D-IVLPLE-EGWA  216 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHH----------HHTC---S-EEEESS-TTHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH----------hcCC---c-EEecCc-hhHH
Confidence            5678899999999997  5688899999988985 999999876222211          2232   1 122222 2221


Q ss_pred             --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..+  +...+|+++-..-   .   ..+....+.|++||+++..
T Consensus       217 ~~v~~~~~~~g~Dvvid~~g---~---~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          217 KAVREATGGAGVDMVVDPIG---G---PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             HHHHHHTTTSCEEEEEESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhCCCCceEEEECCc---h---hHHHHHHHhhcCCCEEEEE
Confidence              000  0113677764322   1   2567788999999999975

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.22  E-value=0.012  Score=64.92  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=47.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-cc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATG-----CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EH  127 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~  127 (268)
                      .+..+||+||.|+|..+..+....+     ....+-.|+|+.....  +++.++.         -+++.-.-|..+. ++
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~--a~~~f~~---------~di~~~~~d~~~~~~~ 1307 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEA--AQAKLEQ---------LHVTQGQWDPANPAPG 1307 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTT--TTTTHHH---------HTEEEECCCSSCCCC-
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHH--HHHHhhh---------cccccccccccccccC
Confidence            4678999999999988766555443     2346888999763222  2232321         1233322233332 22


Q ss_pred             cccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        128 REKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      ...  .+|+|+..+.+|. ++....+.++.+.|||||.+++.+
T Consensus      1308 ~~~--~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1308 SLG--KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ------CCEEEEECC--------------------CCEEEEEE
T ss_pred             CCC--ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            222  3567777766664 568888999999999999988753

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.12  E-value=0.042  Score=48.64  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=61.3

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||-.|+  |.|..+..+++..|+. |++++.++.  ..+    .++    ..|.   .. .+  |..+..
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~----~~~----~~ga---~~-~~--d~~~~~  226 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEE--GQK----IVL----QNGA---HE-VF--NHREVN  226 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHH--HHH----HHH----HTTC---SE-EE--ETTSTT
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChh--HHH----HHH----HcCC---CE-EE--eCCCch
Confidence            4568899999999997  6688888888888885 999999874  221    111    2231   11 12  332221


Q ss_pred             cccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.      ...+|+++-+.-      ...+...++.|+|||+++..
T Consensus       227 ~~~~~~~~~~~~~~D~vi~~~G------~~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          227 YIDKIKKYVGEKGIDIIIEMLA------NVNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             HHHHHHHHHCTTCEEEEEESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCcEEEEECCC------hHHHHHHHHhccCCCEEEEE
Confidence            1110      113677765322      23577788999999999975

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.11  E-value=0.053  Score=47.63  Aligned_cols=97  Identities=22%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cc
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HR  128 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~  128 (268)
                      .+++|++||=+|+|. |.++..+|+..|..+|+++|.++.  +.+    .+    +..|..    .++..+- ++.  ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~--~~~----~~----~~lGa~----~~i~~~~-~~~~~v~  232 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDD--RLA----LA----REVGAD----AAVKSGA-GAADAIR  232 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHH--HHH----HH----HHTTCS----EEEECST-THHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHH----HH----HHcCCC----EEEcCCC-cHHHHHH
Confidence            789999999999976 788888898885556999999975  221    11    123321    1222111 211  00


Q ss_pred             c--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 E--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +  +...+|+++-. .    .-...+....+.|+|||+++..
T Consensus       233 ~~t~g~g~d~v~d~-~----G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          233 ELTGGQGATAVFDF-V----GAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             HHHGGGCEEEEEES-S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhCCCCCeEEEEC-C----CCHHHHHHHHHHHhcCCEEEEE
Confidence            0  01146777642 1    1234678889999999999986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.09  E-value=0.043  Score=48.37  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=61.4

Q ss_pred             HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +...++ +|++||-+|+|. |..+..+|+..|+.+|++++.++.  +.+.    ++    ..|.   . .++  |..+..
T Consensus       161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~--~~~~----~~----~~Ga---~-~~~--~~~~~~  223 (348)
T 2d8a_A          161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF--RREL----AK----KVGA---D-YVI--NPFEED  223 (348)
T ss_dssp             HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH--HHHH----HH----HHTC---S-EEE--CTTTSC
T ss_pred             HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHHH----HH----HhCC---C-EEE--CCCCcC
Confidence            356678 999999999964 777888888889844999999874  2221    11    2232   1 122  222211


Q ss_pred             ccc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HRE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+      +...+|+++-..-     ....+....+.|++||+++..
T Consensus       224 ~~~~v~~~~~g~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          224 VVKEVMDITDGNGVDVFLEFSG-----APKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            111      0113677764321     135678888999999999975

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.04  E-value=0.18  Score=44.02  Aligned_cols=103  Identities=15%  Similarity=0.209  Sum_probs=63.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...++.+|++||=.|+|. |.++..+|+..|+..++++|.++.  +++    .+    ++.|.    -..+..+-.+
T Consensus       151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~--k~~----~a----~~lGa----~~~i~~~~~~  216 (346)
T 4a2c_A          151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSE--KLA----LA----KSFGA----MQTFNSSEMS  216 (346)
T ss_dssp             HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHH----HH----HHTTC----SEEEETTTSC
T ss_pred             HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHH--HHH----HH----HHcCC----eEEEeCCCCC
Confidence            456677899999999999975 556777888889887899999975  221    11    23342    1222222112


Q ss_pred             Cc-----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE-----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~-----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+     ..+. .-+|+++-. .    .....+....+.|++||++++.
T Consensus       217 ~~~~~~~~~~~-~g~d~v~d~-~----G~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          217 APQMQSVLREL-RFNQLILET-A----GVPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             HHHHHHHHGGG-CSSEEEEEC-S----CSHHHHHHHHHHCCTTCEEEEC
T ss_pred             HHHHHHhhccc-CCccccccc-c----cccchhhhhhheecCCeEEEEE
Confidence            11     0111 124555532 1    1245677888999999999986

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.03  E-value=0.036  Score=47.83  Aligned_cols=94  Identities=18%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc
Q psy17227         50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE  126 (268)
Q Consensus        50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~  126 (268)
                      .. +++|++||-+|+  |.|..+..+|+..|+. |++++.++.....++          ..|.   . .++  |..+ ..
T Consensus       121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~-Vi~~~~~~~~~~~~~----------~~ga---~-~~~--~~~~~~~  182 (302)
T 1iz0_A          121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLALPL----------ALGA---E-EAA--TYAEVPE  182 (302)
T ss_dssp             TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSHHHH----------HTTC---S-EEE--EGGGHHH
T ss_pred             hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH----------hcCC---C-EEE--ECCcchh
Confidence            44 889999999998  5688888899988985 999999875322221          1231   1 111  2221 11


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+....+|+++- .-.      ..+....+.|+|||+++..
T Consensus       183 ~~~~~~~~d~vid-~g~------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          183 RAKAWGGLDLVLE-VRG------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             HHHHTTSEEEEEE-CSC------TTHHHHHTTEEEEEEEEEC
T ss_pred             HHHHhcCceEEEE-CCH------HHHHHHHHhhccCCEEEEE
Confidence            1111124677764 321      3567888999999999875

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=94.99  E-value=0.0024  Score=55.18  Aligned_cols=100  Identities=5%  Similarity=-0.094  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-ccccccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HREKITQ  133 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~~~~d  133 (268)
                      +..+||+=+|+|.+++.+..  +..+++.+|.++.  .++..+++++        ...+++++++|... +. +......
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~--a~~~L~~Nl~--------~~~~~~V~~~D~~~~L~~l~~~~~~  159 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPT--EYNFLLKLPH--------FNKKVYVNHTDGVSKLNALLPPPEK  159 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHH--HHHHHTTSCC--------TTSCEEEECSCHHHHHHHHCSCTTS
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHH--HHHHHHHHhC--------cCCcEEEEeCcHHHHHHHhcCCCCC
Confidence            45699999999999998665  4467999999985  2222222221        13579999999754 22 1111124


Q ss_pred             eEEEEEeccccC-cCHHHHHHHHHh--cCCCCcEEEE
Q psy17227        134 ASIVFVNNFAFG-PTVDHALKERFQ--DLKDGARIVS  167 (268)
Q Consensus       134 ~dvv~~~~~~~~-~~~~~~l~e~~r--~LkpGG~~i~  167 (268)
                      +|+||+...+-. .+..+.+..+.+  .+.|+|++++
T Consensus       160 fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          160 RGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             ccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            789999876553 455666666654  6788999887

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.94  E-value=0.028  Score=50.29  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             HHHHcC-CCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC-
Q psy17227         47 MIDQIN-ATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL-  123 (268)
Q Consensus        47 ll~~l~-~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~-  123 (268)
                      .+..++ +++|++||-+|||. |.++..+|+..|..+|++++.++.  +.+.    ++    ..|.   . .++..+.. 
T Consensus       186 al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~----~~----~lGa---~-~vi~~~~~~  251 (380)
T 1vj0_A          186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN--RLKL----AE----EIGA---D-LTLNRRETS  251 (380)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH--HHHH----HH----HTTC---S-EEEETTTSC
T ss_pred             HHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH--HHHH----HH----HcCC---c-EEEeccccC
Confidence            345678 89999999999774 777888888888545999999874  2221    11    2332   1 12221100 


Q ss_pred             CCcccc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHRE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.+      +...+|+++-..-     ....+...++.|+|||+++..
T Consensus       252 ~~~~~~~v~~~~~g~g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          252 VEERRKAIMDITHGRGADFILEATG-----DSRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             cchHHHHHHHHhCCCCCcEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            111100      0113677764321     123567788999999999975

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.92  E-value=0.086  Score=47.49  Aligned_cols=39  Identities=23%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++++|++||=+|+|. |.+++.+|+..|+.+|+++|.++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  249 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV  249 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            688999999999875 777888888889966999999974

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.91  E-value=0.11  Score=39.50  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc--c
Q psy17227         56 DDVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--K  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--~  130 (268)
                      .++|+=+|||.  ++..+|+   ..|.. |+++|.+++  .+..    ++         ...+.++.||..+...-.  +
T Consensus         7 ~~~viIiG~G~--~G~~la~~L~~~g~~-v~vid~~~~--~~~~----~~---------~~g~~~i~gd~~~~~~l~~a~   68 (140)
T 3fwz_A            7 CNHALLVGYGR--VGSLLGEKLLASDIP-LVVIETSRT--RVDE----LR---------ERGVRAVLGNAANEEIMQLAH   68 (140)
T ss_dssp             CSCEEEECCSH--HHHHHHHHHHHTTCC-EEEEESCHH--HHHH----HH---------HTTCEEEESCTTSHHHHHHTT
T ss_pred             CCCEEEECcCH--HHHHHHHHHHHCCCC-EEEEECCHH--HHHH----HH---------HcCCCEEECCCCCHHHHHhcC
Confidence            45688888854  4444443   45666 999999985  2211    11         125678999998754211  2


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++|++++..  ..+.....+....+.+.|+..++..
T Consensus        69 i~~ad~vi~~~--~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           69 LECAKWLILTI--PNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             GGGCSEEEECC--SCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             cccCCEEEEEC--CChHHHHHHHHHHHHHCCCCeEEEE
Confidence            34566666521  1122233344566778888887763

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.90  E-value=0.075  Score=47.13  Aligned_cols=101  Identities=15%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             HHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +....++++|++||-+|  .|.|..+..+|+..|+. |++++.++.  +.+.    ++    ..|.   . .++..+-.+
T Consensus       155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~~Ga---~-~~~~~~~~~  219 (362)
T 2c0c_A          155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCH-VIGTCSSDE--KSAF----LK----SLGC---D-RPINYKTEP  219 (362)
T ss_dssp             HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HTTC---S-EEEETTTSC
T ss_pred             HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEECCHH--HHHH----HH----HcCC---c-EEEecCChh
Confidence            33456889999999999  56788899999988985 999999864  2211    11    2232   1 122211111


Q ss_pred             Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  ... ....+|+++-..-   .   ..+....+.|++||+++..
T Consensus       220 ~~~~~~~~~~~g~D~vid~~g---~---~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          220 VGTVLKQEYPEGVDVVYESVG---G---AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             HHHHHHHHCTTCEEEEEECSC---T---HHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCCEEEECCC---H---HHHHHHHHHHhcCCEEEEE
Confidence            11  000 0013677765322   1   4678888999999999975

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.86  E-value=0.035  Score=48.43  Aligned_cols=97  Identities=20%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             HHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||=+|  .|.|..+..+|+..|+. |++++.++.  +.+.    ++    ..|.   .. .+  |..+..
T Consensus       134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~~Ga---~~-~~--~~~~~~  196 (325)
T 3jyn_A          134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPE--KAAH----AK----ALGA---WE-TI--DYSHED  196 (325)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSHH--HHHH----HH----HHTC---SE-EE--ETTTSC
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcCC---CE-EE--eCCCcc
Confidence            445789999999999  35688888899988985 999999874  2221    11    2232   11 22  222211


Q ss_pred             cccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.      ...+|+++-+.-   .   ..+....+.|+|||+++..
T Consensus       197 ~~~~~~~~~~~~g~Dvvid~~g---~---~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          197 VAKRVLELTDGKKCPVVYDGVG---Q---DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             HHHHHHHHTTTCCEEEEEESSC---G---GGHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCceEEEECCC---h---HHHHHHHHHhcCCCEEEEE
Confidence            1110      124677765322   1   3567888999999999986

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.82  E-value=0.12  Score=45.20  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=60.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCC-HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVG-QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G-~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||=+|+|.+ .++..+|+..+..+|+++|.+++  +.+.    +    +..|.   .. ++  |..+.
T Consensus       155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~--r~~~----~----~~~Ga---~~-~i--~~~~~  218 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQD--KLNL----A----KKIGA---DV-TI--NSGDV  218 (348)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHH--HHHH----H----HHTTC---SE-EE--EC-CC
T ss_pred             eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHH--Hhhh----h----hhcCC---eE-EE--eCCCC
Confidence            456678999999999999874 45666666665556999999974  2211    1    12332   11 22  22221


Q ss_pred             cccc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.+      +...+|+++...     .-...+....+.|++||++++.
T Consensus       219 ~~~~~v~~~t~g~g~d~~~~~~-----~~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          219 NPVDEIKKITGGLGVQSAIVCA-----VARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             CHHHHHHHHTTSSCEEEEEECC-----SCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CHHHHhhhhcCCCCceEEEEec-----cCcchhheeheeecCCceEEEE
Confidence            1111      112344554321     2245678888999999999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.72  E-value=0.065  Score=47.18  Aligned_cols=100  Identities=18%  Similarity=0.278  Sum_probs=62.8

Q ss_pred             HHHHcCCCCCCEEEEEcCC--CCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         47 MIDQINATPDDVFVDLGSG--VGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG--~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+...+++++++||-+|+|  .|..+..+++.. |+. |+++|.++.  ..+.    ++    ..|.   ...+   |..
T Consensus       162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~-Vi~~~~~~~--~~~~----~~----~~g~---~~~~---~~~  224 (347)
T 1jvb_A          162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREE--AVEA----AK----RAGA---DYVI---NAS  224 (347)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHH--HHHH----HH----HHTC---SEEE---ETT
T ss_pred             HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCe-EEEEcCCHH--HHHH----HH----HhCC---CEEe---cCC
Confidence            4456789999999999998  677788888888 886 999999874  2221    11    1231   1112   222


Q ss_pred             CCcc----cccc--cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEH----REKI--TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~----~~~~--~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+    ....  ..+|+++-+.-     ....+....+.|+|||+++..
T Consensus       225 ~~~~~~~~~~~~~~~~~d~vi~~~g-----~~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          225 MQDPLAEIRRITESKGVDAVIDLNN-----SEKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             TSCHHHHHHHHTTTSCEEEEEESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred             CccHHHHHHHHhcCCCceEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            2111    0101  14677764322     134677888999999999975

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.68  E-value=0.039  Score=48.10  Aligned_cols=96  Identities=21%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             HcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         50 QINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        50 ~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      ..++++|++||-.|  +|.|..+..+++..|+. |++++.++.  ..+.    ++    ..|.   .. .+  |..+..+
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-V~~~~~~~~--~~~~----~~----~~g~---~~-~~--~~~~~~~  197 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQ--KAQS----AL----KAGA---WQ-VI--NYREEDL  197 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHH--HHHH----HH----HHTC---SE-EE--ETTTSCH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HH----HcCC---CE-EE--ECCCccH
Confidence            56889999999999  56788888888888985 999999864  2221    11    1221   11 12  3322211


Q ss_pred             ccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 REK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 ~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+.      ...+|+++-+.-      ...+...++.|++||+++..
T Consensus       198 ~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          198 VERLKEITGGKKVRVVYDSVG------RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             HHHHHHHTTTCCEEEEEECSC------GGGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCceEEEECCc------hHHHHHHHHHhcCCCEEEEE
Confidence            110      113677765432      24577888999999999975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.49  E-value=0.041  Score=48.42  Aligned_cols=93  Identities=14%  Similarity=0.045  Sum_probs=58.2

Q ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-
Q psy17227         52 NATPDDVFVDLGSGV-GQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-  126 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~-G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-  126 (268)
                      ++ +|++||-+|+|. |.++..+|+..  |+. |++++.|+.  +.+.    ++    ..|..  .  ++  |..+ .. 
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~-Vi~~~~~~~--~~~~----~~----~lGa~--~--vi--~~~~~~~~  229 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNIT-IVGISRSKK--HRDF----AL----ELGAD--Y--VS--EMKDAESL  229 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCE-EEEECSCHH--HHHH----HH----HHTCS--E--EE--CHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCE-EEEEeCCHH--HHHH----HH----HhCCC--E--Ee--ccccchHH
Confidence            78 999999999975 77788889888  886 999999874  2211    11    23321  1  11  1111 00 


Q ss_pred             ---ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 ---HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ---~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                         ..+. ..+|+++-..-     ....+....+.|+|||+++..
T Consensus       230 ~~~~~~g-~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          230 INKLTDG-LGASIAIDLVG-----TEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             HHHHHTT-CCEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHhhcC-CCccEEEECCC-----ChHHHHHHHHHhhcCCEEEEe
Confidence               1111 13677764321     134678888999999999975

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.44  E-value=0.099  Score=46.11  Aligned_cols=101  Identities=15%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             HHHHcCCCCC--CEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         47 MIDQINATPD--DVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        47 ll~~l~~~~~--~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +....++++|  ++||-.|+  |.|..+..+++..|+.+|++++.++.  ..+.    +.+   ..|.   .. .+  |.
T Consensus       150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~--~~~~----~~~---~~g~---~~-~~--d~  214 (357)
T 2zb4_A          150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE--KCIL----LTS---ELGF---DA-AI--NY  214 (357)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH--HHHH----HHH---TSCC---SE-EE--ET
T ss_pred             HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH--HHHH----HHH---HcCC---ce-EE--ec
Confidence            4467789999  99999998  66778888888888845999999863  2211    111   1221   11 11  33


Q ss_pred             CCCccccc----c-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREK----I-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~----~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+..+.+.    . ..+|+++-+.-      ...+....+.|++||+++..
T Consensus       215 ~~~~~~~~~~~~~~~~~d~vi~~~G------~~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          215 KKDNVAEQLRESCPAGVDVYFDNVG------GNISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TTSCHHHHHHHHCTTCEEEEEESCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CchHHHHHHHHhcCCCCCEEEECCC------HHHHHHHHHHhccCcEEEEE
Confidence            32211110    0 13677765432      25678888999999999975

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.41  E-value=0.04  Score=48.71  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             HHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||=+|  .|.|..+..+|+..|+. |++++.++.  +.+.    ++    +.|.   .. .+  |..+..
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~lGa---~~-~~--~~~~~~  223 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAE-VYATAGSTG--KCEA----CE----RLGA---KR-GI--NYRSED  223 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HHTC---SE-EE--ETTTSC
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HH----hcCC---CE-EE--eCCchH
Confidence            556889999999995  35688888999988986 999999875  2221    11    2232   11 22  222221


Q ss_pred             cccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.     ...+|+++-+.-   .   ..+....+.|+|||+++..
T Consensus       224 ~~~~~~~~~~~g~Dvvid~~g---~---~~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          224 FAAVIKAETGQGVDIILDMIG---A---AYFERNIASLAKDGCLSII  264 (353)
T ss_dssp             HHHHHHHHHSSCEEEEEESCC---G---GGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCceEEEECCC---H---HHHHHHHHHhccCCEEEEE
Confidence            1111     113677764322   1   2567788999999999975

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.37  E-value=0.038  Score=48.58  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             cCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         51 INATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        51 l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      .+++++++||-+|+  |.|..+..+++..|+. |++++.++.  +.+.    ++    ..|.   .. ++  |..+..+.
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~-Vi~~~~~~~--~~~~----~~----~~ga---~~-~~--d~~~~~~~  224 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR-VIATAGSED--KLRR----AK----ALGA---DE-TV--NYTHPDWP  224 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HHTC---SE-EE--ETTSTTHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----hcCC---CE-EE--cCCcccHH
Confidence            47889999999998  6888899999988885 999999874  2221    11    1232   11 12  33322111


Q ss_pred             c------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 E------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +      +...+|+++-+.-   .   ..+....+.|++||+++..
T Consensus       225 ~~~~~~~~~~~~d~vi~~~g---~---~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          225 KEVRRLTGGKGADKVVDHTG---A---LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             HHHHHHTTTTCEEEEEESSC---S---SSHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHhCCCCceEEEECCC---H---HHHHHHHHhhccCCEEEEE
Confidence            1      0124677775432   1   2467778899999999975

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.36  E-value=0.07  Score=47.34  Aligned_cols=94  Identities=10%  Similarity=0.087  Sum_probs=58.3

Q ss_pred             HcCCC--C-------CCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCC---ChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         50 QINAT--P-------DDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKAD---LPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        50 ~l~~~--~-------~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      ..+++  +       |++||-+|+|. |.++..+|+..|+ +|++++.++   .  ..+    .++    ..|.     .
T Consensus       166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~--~~~----~~~----~~ga-----~  229 (366)
T 2cdc_A          166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEV--EQT----VIE----ETKT-----N  229 (366)
T ss_dssp             GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHH--HHH----HHH----HHTC-----E
T ss_pred             ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchH--HHH----HHH----HhCC-----c
Confidence            66788  8       99999999853 6667778888898 499999987   4  111    111    2232     2


Q ss_pred             EEEcCCCCCcccccc----cceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHREKI----TQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~----~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      .+  | .+ .+.+..    ..+|+++-..- . +   ..+ ....+.|+|||+++..
T Consensus       230 ~v--~-~~-~~~~~~~~~~~~~d~vid~~g-~-~---~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          230 YY--N-SS-NGYDKLKDSVGKFDVIIDATG-A-D---VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EE--E-CT-TCSHHHHHHHCCEEEEEECCC-C-C---THHHHHHGGGEEEEEEEEEC
T ss_pred             ee--c-hH-HHHHHHHHhCCCCCEEEECCC-C-h---HHHHHHHHHHHhcCCEEEEE
Confidence            22  2 22 211110    23677765322 1 1   245 7888999999999975

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.12  E-value=0.097  Score=45.72  Aligned_cols=98  Identities=19%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      ..++++|++||=+|+  |.|..+..+|+..|+. |++++.++.  +++.    ++    ..|.   . .++..+-.++. 
T Consensus       143 ~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~~ga---~-~~~~~~~~~~~~  207 (334)
T 3qwb_A          143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDE--KLKI----AK----EYGA---E-YLINASKEDILR  207 (334)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HTTC---S-EEEETTTSCHHH
T ss_pred             hccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcCC---c-EEEeCCCchHHH
Confidence            347899999999994  6688888888888985 999999864  2221    11    2331   1 12221111211 


Q ss_pred             -ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 -HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 -~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ..+  +...+|+++-+.-      ...+....+.|+|||+++..
T Consensus       208 ~~~~~~~~~g~D~vid~~g------~~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          208 QVLKFTNGKGVDASFDSVG------KDTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             HHHHHTTTSCEEEEEECCG------GGGHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhCCCCceEEEECCC------hHHHHHHHHHhccCCEEEEE
Confidence             000  0123677765322      14577788999999999986

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.10  E-value=0.05  Score=48.10  Aligned_cols=97  Identities=15%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             HHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||-.|  .|.|..+..+++..|+. |++++.++.  +++.    ++    ..|.   .. .+  |..+..
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-Vi~~~~~~~--~~~~----~~----~~g~---~~-~~--~~~~~~  218 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAI-PLVTAGSQK--KLQM----AE----KLGA---AA-GF--NYKKED  218 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HH----HHTC---SE-EE--ETTTSC
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HH----HcCC---cE-EE--ecCChH
Confidence            456889999999999  36788888888888885 999999874  2221    11    1232   11 11  222221


Q ss_pred             cccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.      ...+|+++-+.-   .   ..+....+.|++||+++..
T Consensus       219 ~~~~~~~~~~~~~~d~vi~~~G---~---~~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          219 FSEATLKFTKGAGVNLILDCIG---G---SYWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             HHHHHHHHTTTSCEEEEEESSC---G---GGHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCceEEEECCC---c---hHHHHHHHhccCCCEEEEE
Confidence            1110      113677765432   1   2467778999999999975

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.09  E-value=0.096  Score=45.74  Aligned_cols=97  Identities=14%  Similarity=0.213  Sum_probs=61.5

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...+++++++||-.|+  |.|..+..+++..|+. |++++.++.  ..+.    ++    ..|.   .. .+  |..+..
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-Vi~~~~~~~--~~~~----~~----~~g~---~~-~~--d~~~~~  201 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEE--KAET----AR----KLGC---HH-TI--NYSTQD  201 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESSHH--HHHH----HH----HHTC---SE-EE--ETTTSC
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcCC---CE-EE--ECCCHH
Confidence            3568899999999995  7788888888888885 999999864  2211    11    1231   11 11  333221


Q ss_pred             cccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.      ...+|+++-+.-.      ..+....+.|+|||+++..
T Consensus       202 ~~~~i~~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          202 FAEVVREITGGKGVDVVYDSIGK------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSCT------TTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCeEEEECCcH------HHHHHHHHhhccCCEEEEE
Confidence            1110      1136777754321      4577888999999999875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.04  E-value=0.058  Score=46.98  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             HHcCCCCCC-EEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-CC
Q psy17227         49 DQINATPDD-VFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-LT  124 (268)
Q Consensus        49 ~~l~~~~~~-~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~~  124 (268)
                      ...++++++ +||=+|+  |.|.++..+|+..|+. |++++.++.-...++          ..|..  .+ +-..+. .+
T Consensus       142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~~~~~----------~lGa~--~~-i~~~~~~~~  207 (328)
T 1xa0_A          142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEHDYLR----------VLGAK--EV-LAREDVMAE  207 (328)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCHHHHH----------HTTCS--EE-EECC-----
T ss_pred             hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH----------HcCCc--EE-EecCCcHHH
Confidence            446788886 8999997  6788899999988987 999999875222221          23321  11 111111 00


Q ss_pred             -Cc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 -EE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 -l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .. ...  ..+|+++-..-   .   ..+....+.|++||+++..
T Consensus       208 ~~~~~~~--~~~d~vid~~g---~---~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          208 RIRPLDK--QRWAAAVDPVG---G---RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             ----CCS--CCEEEEEECST---T---TTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhcC--CcccEEEECCc---H---HHHHHHHHhhccCCEEEEE
Confidence             00 111  13677664321   1   2467788999999999975

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.00  E-value=0.19  Score=43.65  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             HHHHcCCCCCCEEEEEc-CC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLG-SG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiG-CG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...++++|++||=+| +| .|.++..+|+..|+. |++++ ++.  ..+    .+    ++.|..    .++  |..+
T Consensus       144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~-vi~~~-~~~--~~~----~~----~~lGa~----~~i--~~~~  205 (321)
T 3tqh_A          144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTT-VITTA-SKR--NHA----FL----KALGAE----QCI--NYHE  205 (321)
T ss_dssp             HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEE-CHH--HHH----HH----HHHTCS----EEE--ETTT
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEe-ccc--hHH----HH----HHcCCC----EEE--eCCC
Confidence            34778999999999997 44 588899999988985 88887 432  111    11    223421    122  2322


Q ss_pred             Cc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ +.+....+|+++-..-      ...+...++.|+|||+++..
T Consensus       206 ~~~~~~~~~g~D~v~d~~g------~~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          206 EDFLLAISTPVDAVIDLVG------GDVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             SCHHHHCCSCEEEEEESSC------HHHHHHHGGGEEEEEEEEEC
T ss_pred             cchhhhhccCCCEEEECCC------cHHHHHHHHhccCCCEEEEe
Confidence            22 2222234677764211      23347788999999999975

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.81  E-value=0.13  Score=44.53  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             HHcCCCCCC-EEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         49 DQINATPDD-VFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        49 ~~l~~~~~~-~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ..+++++++ +||=.|+  |.|.++..+|+..|+. |++++.++.-...++          +.|.   ..-+-..+....
T Consensus       139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~-Vi~~~~~~~~~~~~~----------~lGa---~~vi~~~~~~~~  204 (324)
T 3nx4_A          139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQ-VAAVSGRESTHGYLK----------SLGA---NRILSRDEFAES  204 (324)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHH----------HHTC---SEEEEGGGSSCC
T ss_pred             hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH----------hcCC---CEEEecCCHHHH
Confidence            455676632 4999997  6789999999999995 999999986222221          2332   111211121110


Q ss_pred             c-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . ...  ..+|+++-. .  .   ...+....+.|+|||+++..
T Consensus       205 ~~~~~--~~~d~v~d~-~--g---~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          205 RPLEK--QLWAGAIDT-V--G---DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CSSCC--CCEEEEEES-S--C---HHHHHHHHHTEEEEEEEEEC
T ss_pred             HhhcC--CCccEEEEC-C--C---cHHHHHHHHHHhcCCEEEEE
Confidence            0 011  135666532 2  1   23788889999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.79  E-value=0.058  Score=47.38  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             HcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227         50 QINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR  128 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~  128 (268)
                      ..++ +|++||-+|+|. |.++..+|+..|+.+|++++.++.  +++.    ++    .  . . . .++  |..+..+.
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~--~~~~----~~----~--l-a-~-~v~--~~~~~~~~  221 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPY--RLAF----AR----P--Y-A-D-RLV--NPLEEDLL  221 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH--HHGG----GT----T--T-C-S-EEE--CTTTSCHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHHH----HH----H--h-H-H-hcc--CcCccCHH
Confidence            6678 999999999864 777888888889834999999864  1111    11    0  1 0 1 111  22221111


Q ss_pred             cc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 EK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 ~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.     ...+|+++-..-     ....+....+.|+|||+++..
T Consensus       222 ~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          222 EVVRRVTGSGVEVLLEFSG-----NEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHHHHHHSSCEEEEEECSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            10     113677764321     135678888999999999975

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.73  E-value=0.1  Score=45.31  Aligned_cols=75  Identities=15%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcE--EEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKI--CWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-  129 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~--v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-  129 (268)
                      .+.+.+|+|+=||.|++..-+. ..|...  |.++|+++.+.      +.++.   +    .+...++++|+.++...+ 
T Consensus        13 ~~~~~~vidLFaG~GG~~~g~~-~aG~~~~~v~a~E~d~~a~------~ty~~---N----~~~~~~~~~DI~~i~~~~i   78 (295)
T 2qrv_A           13 KRKPIRVLSLFDGIATGLLVLK-DLGIQVDRYIASEVCEDSI------TVGMV---R----HQGKIMYVGDVRSVTQKHI   78 (295)
T ss_dssp             CCCCEEEEEETCTTTHHHHHHH-HTTBCEEEEEEECCCHHHH------HHHHH---H----TTTCEEEECCGGGCCHHHH
T ss_pred             cCCCCEEEEeCcCccHHHHHHH-HCCCccceEEEEECCHHHH------HHHHH---h----CCCCceeCCChHHccHHHh
Confidence            4456789999999999997654 467764  69999998522      22221   1    234568899999875321 


Q ss_pred             -cccceEEEEEec
Q psy17227        130 -KITQASIVFVNN  141 (268)
Q Consensus       130 -~~~d~dvv~~~~  141 (268)
                       ...++|+++...
T Consensus        79 ~~~~~~Dll~ggp   91 (295)
T 2qrv_A           79 QEWGPFDLVIGGS   91 (295)
T ss_dssp             HHTCCCSEEEECC
T ss_pred             cccCCcCEEEecC
Confidence             112567887543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.71  E-value=0.085  Score=45.97  Aligned_cols=98  Identities=17%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             HHcCCCCCC-EEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC--C
Q psy17227         49 DQINATPDD-VFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF--L  123 (268)
Q Consensus        49 ~~l~~~~~~-~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~--~  123 (268)
                      ...++++|+ +||=+||  |.|.++..+|+..|+. |++++.++.-...++          ..|..  .+ +-..|.  .
T Consensus       143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~~~~~----------~lGa~--~v-~~~~~~~~~  208 (330)
T 1tt7_A          143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAADYLK----------QLGAS--EV-ISREDVYDG  208 (330)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTHHHHH----------HHTCS--EE-EEHHHHCSS
T ss_pred             HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH----------HcCCc--EE-EECCCchHH
Confidence            345788886 8999997  6788888999988987 999999976222221          12321  11 111111  0


Q ss_pred             CCc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ... ...  ..+|+++-..-    .  ..+....+.|+|||+++..
T Consensus       209 ~~~~~~~--~~~d~vid~~g----~--~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          209 TLKALSK--QQWQGAVDPVG----G--KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CCCSSCC--CCEEEEEESCC----T--HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHhhc--CCccEEEECCc----H--HHHHHHHHhhcCCCEEEEE
Confidence            000 111  13677664321    1  3678888999999999975

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.50  E-value=0.07  Score=47.11  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQ  133 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d  133 (268)
                      .+|+|+-||.|++..-+.. .|.  ..+.++|+++.      +.+.++.   +    .+...++++|+.++...+- ..+
T Consensus         4 ~~~idLFaG~GG~~~G~~~-aG~~~~~v~a~e~d~~------a~~ty~~---N----~~~~~~~~~DI~~~~~~~~~~~~   69 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKE-SGLDGEIVAAVDINTV------ANSVYKH---N----FPETNLLNRNIQQLTPQVIKKWN   69 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHH-HTCSEEEEEEECCCHH------HHHHHHH---H----CTTSCEECCCGGGCCHHHHHHTT
T ss_pred             CEEEEECcCccHHHHHHHH-cCCCceEEEEEeCCHH------HHHHHHH---h----CCCCceeccccccCCHHHhccCC
Confidence            4799999999999986644 464  55799999985      2222221   1    2344578899988753211 114


Q ss_pred             eEEEEEecc
Q psy17227        134 ASIVFVNNF  142 (268)
Q Consensus       134 ~dvv~~~~~  142 (268)
                      +|+++....
T Consensus        70 ~D~l~ggpP   78 (333)
T 4h0n_A           70 VDTILMSPP   78 (333)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEecCC
Confidence            678775433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.37  E-value=0.24  Score=39.06  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCCCHHHHHHH---HHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-cc-
Q psy17227         56 DDVFVDLGSGVGQVVLQVA---AAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-RE-  129 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la---~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~-  129 (268)
                      +++|+=+|||  .++..++   ... |.. |+++|.++.  ....    +++         ..+.++.+|..+... .. 
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~-V~vid~~~~--~~~~----~~~---------~g~~~~~gd~~~~~~l~~~  100 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGKI-SLGIEIREE--AAQQ----HRS---------EGRNVISGDATDPDFWERI  100 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCSC-EEEEESCHH--HHHH----HHH---------TTCCEEECCTTCHHHHHTB
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCCe-EEEEECCHH--HHHH----HHH---------CCCCEEEcCCCCHHHHHhc
Confidence            5679999875  4444444   344 776 999999974  2211    111         245678889876432 11 


Q ss_pred             -cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 -KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 -~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +..++|+|++..  ..+.....+....+.+.|++.+++.
T Consensus       101 ~~~~~ad~vi~~~--~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          101 LDTGHVKLVLLAM--PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CSCCCCCEEEECC--SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCCCCCCEEEEeC--CChHHHHHHHHHHHHHCCCCEEEEE
Confidence             234567776521  1222333445566777888887764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.30  E-value=0.33  Score=37.24  Aligned_cols=97  Identities=16%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCCCCcc-cc-
Q psy17227         54 TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFLTEEH-RE-  129 (268)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~~l~~-~~-  129 (268)
                      .++++|+=+|||. |......+...|.. |+++|.++.  ....             .. ...+.++.+|..+... .. 
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~-V~vid~~~~--~~~~-------------~~~~~g~~~~~~d~~~~~~l~~~   80 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHS-VVVVDKNEY--AFHR-------------LNSEFSGFTVVGDAAEFETLKEC   80 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCGG--GGGG-------------SCTTCCSEEEESCTTSHHHHHTT
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH--HHHH-------------HHhcCCCcEEEecCCCHHHHHHc
Confidence            4678999999854 33333333345664 999999975  1111             01 1235577788765331 11 


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+|++..  -.+.....+..+.+.+.|...++..
T Consensus        81 ~~~~ad~Vi~~~--~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           81 GMEKADMVFAFT--NDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             TGGGCSEEEECS--SCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             CcccCCEEEEEe--CCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            123567776531  2233444555666666676676653

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=93.19  E-value=0.089  Score=46.32  Aligned_cols=72  Identities=7%  Similarity=0.111  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhC--CcEE-EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-c
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATG--CKIC-WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-I  131 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~--~~~v-~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~  131 (268)
                      ..+|+|+-||.|++..-+.. .|  ...+ .++|+++.+.      +.++.   +.+    .. ++++|+.++...+- .
T Consensus        10 ~~~vidLFaG~GG~~~G~~~-aG~~~~~v~~a~e~d~~a~------~ty~~---N~~----~~-~~~~DI~~~~~~~i~~   74 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYER-SSININATFIPFDINEIAN------KIYSK---NFK----EE-VQVKNLDSISIKQIES   74 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHH-SSCCCCEEEEEECCCHHHH------HHHHH---HHC----CC-CBCCCTTTCCHHHHHH
T ss_pred             CCEEEEECCChhHHHHHHHH-cCCCceEEEEEEECCHHHH------HHHHH---HCC----CC-cccCChhhcCHHHhcc
Confidence            45899999999999986544 56  3556 7999998522      22221   111    12 67899998763221 0


Q ss_pred             cceEEEEEecc
Q psy17227        132 TQASIVFVNNF  142 (268)
Q Consensus       132 ~d~dvv~~~~~  142 (268)
                      .++|+++....
T Consensus        75 ~~~Dil~ggpP   85 (327)
T 3qv2_A           75 LNCNTWFMSPP   85 (327)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCCCEEEecCC
Confidence            14678876544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.15  E-value=0.098  Score=46.01  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             HHHHcCCC------CCCEEEEE-cCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         47 MIDQINAT------PDDVFVDL-GSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        47 ll~~l~~~------~~~~vLDi-GCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      +....+++      +|++||=+ ||| .|.++..+|+..|+. |++++.++.  +.+.    ++    +.|..    .++
T Consensus       136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~-Vi~~~~~~~--~~~~----~~----~lGa~----~vi  200 (346)
T 3fbg_A          136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLR-VITTASRNE--TIEW----TK----KMGAD----IVL  200 (346)
T ss_dssp             HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEECCSHH--HHHH----HH----HHTCS----EEE
T ss_pred             HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HH----hcCCc----EEE
Confidence            34566777      89999999 454 477888889888985 999999864  2221    11    23321    112


Q ss_pred             EcCCCC-Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLT-EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~-l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        |..+ +.  ..+ ....+|+++-.     ..-...+....+.|+|||+++..
T Consensus       201 --~~~~~~~~~~~~~~~~g~Dvv~d~-----~g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          201 --NHKESLLNQFKTQGIELVDYVFCT-----FNTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             --CTTSCHHHHHHHHTCCCEEEEEES-----SCHHHHHHHHHHHEEEEEEEEES
T ss_pred             --ECCccHHHHHHHhCCCCccEEEEC-----CCchHHHHHHHHHhccCCEEEEE
Confidence              2211 11  000 11236777642     12345578888999999999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.93  E-value=0.18  Score=44.70  Aligned_cols=100  Identities=14%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             HHHcCCC-----CCCEEEEEc-CC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         48 IDQINAT-----PDDVFVDLG-SG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        48 l~~l~~~-----~~~~vLDiG-CG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ....+++     +|++||=+| +| .|.+++.+|+..+..+|++++.++.  +.+.    +    ++.|..    .++  
T Consensus       159 ~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~--~~~~----~----~~lGad----~vi--  222 (363)
T 4dvj_A          159 FDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE--TQEW----V----KSLGAH----HVI--  222 (363)
T ss_dssp             HTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH--HHHH----H----HHTTCS----EEE--
T ss_pred             HHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHH----H----HHcCCC----EEE--
Confidence            3556777     899999998 54 4888899998753335999999874  2211    1    123321    112  


Q ss_pred             CCCC-Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLT-EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~-l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |..+ +.  ..+ ....+|+++-.     ..-...+....+.|+|||+++..
T Consensus       223 ~~~~~~~~~v~~~~~~g~Dvvid~-----~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          223 DHSKPLAAEVAALGLGAPAFVFST-----THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CTTSCHHHHHHTTCSCCEEEEEEC-----SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             eCCCCHHHHHHHhcCCCceEEEEC-----CCchhhHHHHHHHhcCCCEEEEE
Confidence            2211 11  000 11246776642     12335678889999999999986

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=92.62  E-value=0.86  Score=40.00  Aligned_cols=41  Identities=37%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKAD   89 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~   89 (268)
                      ...++++|++||=+|+  |.|.+++.+|+..|+..++.++.++
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~  203 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP  203 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            3458899999999997  5788899999999987445555554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.46  E-value=0.29  Score=47.25  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh----------CC--cEEEEEeCCCCh-hHHHHHHH-------HHHHHHHHh-----c
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT----------GC--KICWGVEKADLP-AKYAEMHT-------VFKRWMQWY-----G  109 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~----------~~--~~v~GiD~s~~~-~~~a~~~~-------~~~~~~~~~-----~  109 (268)
                      +.-+|+|+|.|+|...+.+.+.+          ..  -+++.+|..|.. ..++++..       .+++.+...     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44689999999999887665543          11  258999997732 23332211       111111111     1


Q ss_pred             c-----cc--ccEEEEEcCCCC-Ccc-cc-cccceEEEEEeccc--cCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 K-----RH--GEFRLVKGDFLT-EEH-RE-KITQASIVFVNNFA--FGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 ~-----~~--~~i~~~~gD~~~-l~~-~~-~~~d~dvv~~~~~~--~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .     ..  -.++++.||+.+ ++- .. ....+|++|...+.  ..|+  ....+..+.+.++|||++.+.
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence            0     01  257888999865 331 11 12458899987663  2233  256789999999999998865

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.39  E-value=0.27  Score=45.02  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             cCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         51 INATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        51 l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      .++++|++||=+|+  |.|.++..+|+..|+. +++++.++.
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~-vi~~~~~~~  264 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGAN-PICVVSSPQ  264 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEECCHH
Confidence            57899999999997  5688889999988986 888887763

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.38  E-value=0.08  Score=46.57  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ...++++|++||=+|+  |.|.++..+|+..|+. |+++ .++.  +++    .++    +.|.   ..  +. +-.++.
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~-Vi~~-~~~~--~~~----~~~----~lGa---~~--i~-~~~~~~  205 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGAR-VFAT-ARGS--DLE----YVR----DLGA---TP--ID-ASREPE  205 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE-ECHH--HHH----HHH----HHTS---EE--EE-TTSCHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEE-eCHH--HHH----HHH----HcCC---CE--ec-cCCCHH
Confidence            6678899999999994  4688889999988985 8998 6653  221    111    2332   11  22 222221


Q ss_pred             --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ..+  +...+|+++-..-      ...+....+.|+|||+++..
T Consensus       206 ~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          206 DYAAEHTAGQGFDLVYDTLG------GPVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHHHHHTTSCEEEEEESSC------THHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHhcCCCceEEEECCC------cHHHHHHHHHHhcCCeEEEE
Confidence              000  1124677764321      14678888999999999975

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.55  E-value=0.48  Score=35.48  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc--c
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--K  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--~  130 (268)
                      .++|+=+|||  .++..+++.   .|.. |+++|.++.  .+..    +.         ...+.++.+|..+...-.  .
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~-V~~id~~~~--~~~~----~~---------~~~~~~~~gd~~~~~~l~~~~   67 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKK-VLAVDKSKE--KIEL----LE---------DEGFDAVIADPTDESFYRSLD   67 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCC-EEEEESCHH--HHHH----HH---------HTTCEEEECCTTCHHHHHHSC
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCe-EEEEECCHH--HHHH----HH---------HCCCcEEECCCCCHHHHHhCC
Confidence            4578999985  455555543   4666 999999974  2211    11         124678999998754211  2


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      ..++|++++..-  ..+.........+.+. ..++++
T Consensus        68 ~~~~d~vi~~~~--~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           68 LEGVSAVLITGS--DDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             CTTCSEEEECCS--CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             cccCCEEEEecC--CHHHHHHHHHHHHHhC-CceEEE
Confidence            235666665311  2223333445556565 455554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.21  E-value=0.33  Score=44.01  Aligned_cols=93  Identities=12%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EK  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~  130 (268)
                      +++|+=+||  |.++..+++   ..|.. |+.||.++.  .+..    +++         ..+.++.||..+...-  .+
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~-vvvId~d~~--~v~~----~~~---------~g~~vi~GDat~~~~L~~ag   65 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVK-MVVLDHDPD--HIET----LRK---------FGMKVFYGDATRMDLLESAG   65 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCC-EEEEECCHH--HHHH----HHH---------TTCCCEESCTTCHHHHHHTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCC-EEEEECCHH--HHHH----HHh---------CCCeEEEcCCCCHHHHHhcC
Confidence            456888887  555555554   34666 999999985  2222    111         2466899999986532  23


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++|++++.  .-.+.....+....|.+.|...+++.
T Consensus        66 i~~A~~viv~--~~~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           66 AAKAEVLINA--IDDPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             TTTCSEEEEC--CSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCccCEEEEC--CCChHHHHHHHHHHHHhCCCCeEEEE
Confidence            3456676652  12233444556777888998887764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=91.16  E-value=1.1  Score=39.01  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCCCcccc----cc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLTEEHRE----KI  131 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~l~~~~----~~  131 (268)
                      ..||+||||.=..+..+.. ....+++-||. |.  .++..++.+.    ..+. ...+.+++.+|+.+ ...+    ..
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~-P~--vi~~k~~lL~----~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g  174 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEIDQ-PK--VLAYKSTTLA----EHGVTPTADRREVPIDLRQ-DWPPALRSAG  174 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEEC-HH--HHHHHHHHHH----HTTCCCSSEEEEEECCTTS-CHHHHHHHTT
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcCC-HH--HHHHHHHHHH----hcCCCCCCCeEEEecchHh-hHHHHHHhcc
Confidence            4699999998887655431 11235888884 43  3332222222    1221 23579999999987 3211    11


Q ss_pred             c---ceEEEEEeccc-cC-cC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 T---QASIVFVNNFA-FG-PT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~---d~dvv~~~~~~-~~-~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +   ...+++++.++ +. ++ ....++.+...+.||+.+++.
T Consensus       175 ~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d  217 (310)
T 2uyo_A          175 FDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE  217 (310)
T ss_dssp             CCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            1   23466666653 33 32 444566667778899988874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=91.01  E-value=0.41  Score=42.17  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+...++++|++||-+|+|. |.++..+|+..|+. |++++.++.....++          ..|.   . .++.  ..+.
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~-Vi~~~~~~~~~~~~~----------~lGa---~-~v~~--~~~~  233 (360)
T 1piw_A          171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKREDAM----------KMGA---D-HYIA--TLEE  233 (360)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHH----------HHTC---S-EEEE--GGGT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHH----------HcCC---C-EEEc--CcCc
Confidence            44557899999999999864 77788888888986 999999986322221          2232   1 1121  1111


Q ss_pred             -cccccc-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 -EHREKI-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 -~~~~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+.+.. ..+|+++-..- ..+  ...+...++.|+|||+++..
T Consensus       234 ~~~~~~~~~~~D~vid~~g-~~~--~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          234 GDWGEKYFDTFDLIVVCAS-SLT--DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             SCHHHHSCSCEEEEEECCS-CST--TCCTTTGGGGEEEEEEEEEC
T ss_pred             hHHHHHhhcCCCEEEECCC-CCc--HHHHHHHHHHhcCCCEEEEe
Confidence             111110 24677764321 100  12355677899999999975

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.79  E-value=0.67  Score=44.53  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh----------CC--cEEEEEeCCCCh-hHHHHHHH-------HHHHHHHHhcc----
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT----------GC--KICWGVEKADLP-AKYAEMHT-------VFKRWMQWYGK----  110 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~----------~~--~~v~GiD~s~~~-~~~a~~~~-------~~~~~~~~~~~----  110 (268)
                      +.-+|||+|-|+|...+...+.+          ..  -.++++|.-|-. ..++++..       .+++.......    
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34589999999999877665543          11  247999995421 12322211       11111111111    


Q ss_pred             ------c--cccEEEEEcCCCC-Ccc-ccc-ccceEEEEEeccc--cCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        111 ------R--HGEFRLVKGDFLT-EEH-REK-ITQASIVFVNNFA--FGPT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       111 ------~--~~~i~~~~gD~~~-l~~-~~~-~~d~dvv~~~~~~--~~~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                            .  .-.+++..||+.+ ++- ... ...+|+++...+.  ..|+  -...+..+++.++|||.+.+.
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                  0  1246678888865 331 111 2458899987763  2344  255689999999999999875

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.65  E-value=0.14  Score=44.17  Aligned_cols=54  Identities=26%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             ccEEEEEcCCCC-Cc-ccccccceEEEEEeccccCc-C--------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        113 GEFRLVKGDFLT-EE-HREKITQASIVFVNNFAFGP-T--------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       113 ~~i~~~~gD~~~-l~-~~~~~~d~dvv~~~~~~~~~-~--------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++++++||+.+ ++ ++++  .+|+|+++..++.. +                    +...+.++.|+|||||.+++.
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~--s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEA--SVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTT--CEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhCCCC--ceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            478999999977 22 2233  57889988765421 0                    234567888999999999764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.61  E-value=0.63  Score=41.19  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEc-C-CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         53 ATPDDVFVDLG-S-GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        53 ~~~~~~vLDiG-C-G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      +++|++||=.| | |.|.++..+|+..|+. |++++ ++.  ..+.    ++    ..|.   .. ++  |..+..+.+.
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~-Vi~~~-~~~--~~~~----~~----~lGa---~~-v~--~~~~~~~~~~  242 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAH-VTAVC-SQD--ASEL----VR----KLGA---DD-VI--DYKSGSVEEQ  242 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE-CGG--GHHH----HH----HTTC---SE-EE--ETTSSCHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEe-ChH--HHHH----HH----HcCC---CE-EE--ECCchHHHHH
Confidence            88999999999 3 4688888889988985 89988 553  2221    11    2332   11 12  2222111110


Q ss_pred             ---ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ---ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ---~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                         ...+|+++-..-    .....+....+.|++||+++..
T Consensus       243 ~~~~~g~D~vid~~g----~~~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          243 LKSLKPFDFILDNVG----GSTETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             HHTSCCBSEEEESSC----TTHHHHGGGGBCSSSCCEEEES
T ss_pred             HhhcCCCCEEEECCC----ChhhhhHHHHHhhcCCcEEEEe
Confidence               113567664311    1123456778899999999975

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=89.84  E-value=0.41  Score=42.02  Aligned_cols=99  Identities=14%  Similarity=0.102  Sum_probs=53.8

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +.+..++++|++||=.|+  |.|.++..+|+..|..+|++++ ++.  +.+.        ++ .|.   . .++. +-.+
T Consensus       134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~--~~~~--------~~-~ga---~-~~~~-~~~~  196 (349)
T 4a27_A          134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STF--KHEA--------IK-DSV---T-HLFD-RNAD  196 (349)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGG--GHHH--------HG-GGS---S-EEEE-TTSC
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHH--HHHH--------HH-cCC---c-EEEc-CCcc
Confidence            335578999999999998  3577788888777665689988 442  2211        11 222   1 1222 1112


Q ss_pred             Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  ..+ ....+|+++-..-   .   ..+....+.|+|||+++..
T Consensus       197 ~~~~~~~~~~~g~Dvv~d~~g---~---~~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          197 YVQEVKRISAEGVDIVLDCLC---G---DNTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             HHHHHHHHCTTCEEEEEEECC-------------CTTEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCceEEEECCC---c---hhHHHHHHHhhcCCEEEEE
Confidence            11  000 0013677764321   1   1236678999999999976

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.81  E-value=1.8  Score=31.72  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EK  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~  130 (268)
                      +++|+=+||  |.++..+++.   .|.. |+.+|.++.  ....    +.+        ...+.++.+|..+...-  ..
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~-v~~~d~~~~--~~~~----~~~--------~~~~~~~~~d~~~~~~l~~~~   66 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHD-IVLIDIDKD--ICKK----ASA--------EIDALVINGDCTKIKTLEDAG   66 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HHH--------HCSSEEEESCTTSHHHHHHTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHH--HHHH----HHH--------hcCcEEEEcCCCCHHHHHHcC
Confidence            467888887  5555555543   4554 999999864  2111    111        11456788888654321  11


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      ..++|+|++..  ..+.....+....+.++++..++
T Consensus        67 ~~~~d~vi~~~--~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           67 IEDADMYIAVT--GKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             TTTCSEEEECC--SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cccCCEEEEee--CCchHHHHHHHHHHHcCCCEEEE
Confidence            23567777642  12223344556667788764333

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=89.50  E-value=0.19  Score=44.00  Aligned_cols=54  Identities=20%  Similarity=0.036  Sum_probs=39.3

Q ss_pred             ccEEEEEcCCCC-Cc-ccccccceEEEEEeccccCc---------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        113 GEFRLVKGDFLT-EE-HREKITQASIVFVNNFAFGP---------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       113 ~~i~~~~gD~~~-l~-~~~~~~d~dvv~~~~~~~~~---------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...++++||..+ ++ +++  ..+|+|+++..+...               .+...+.++.|+|||||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~~--~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPE--ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCS--SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCC--CCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            478899999875 33 233  357889988665332               2566788899999999999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=89.28  E-value=0.64  Score=42.23  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=32.7

Q ss_pred             cCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         51 INATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        51 l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      .++++|++||=.|+  |.|.++..+|+..|+. +++++.++.
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~-vi~~~~~~~  256 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGI-PVAVVSSAQ  256 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHH
Confidence            67899999999997  5578888888888886 888887764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=88.80  E-value=0.28  Score=45.49  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ..+|+|+=||.|++..-+. ..|...|.++|+++.      +.+.++.   +.+. .+...++++|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~-~aG~~~v~avE~d~~------A~~ty~~---N~~~-~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFE-SIGGQCVFTSEWNKH------AVRTYKA---NHYC-DPATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHH-TTTEEEEEEECCCHH------HHHHHHH---HSCC-CTTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHH-HCCCEEEEEEeCCHH------HHHHHHH---hccc-CCCcceeccchhhhh
Confidence            4589999999999997654 467777899999985      2222221   1211 134567889998764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.76  E-value=2.6  Score=37.15  Aligned_cols=94  Identities=12%  Similarity=0.029  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccc
Q psy17227         54 TPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HRE  129 (268)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~  129 (268)
                      ++|++||=+|+  |.|.+++.+|+..|+. |+++. ++.  +.+.    +    +..|.    -.++...-.++.  ..+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~-Vi~~~-~~~--~~~~----~----~~lGa----~~vi~~~~~~~~~~v~~  226 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYI-PIATC-SPH--NFDL----A----KSRGA----EEVFDYRAPNLAQTIRT  226 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE-CGG--GHHH----H----HHTTC----SEEEETTSTTHHHHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe-CHH--HHHH----H----HHcCC----cEEEECCCchHHHHHHH
Confidence            88999999998  3799999999999986 88885 664  2221    1    12332    122222211211  000


Q ss_pred             c-ccceEEEEEeccccCcCHHHHHHHHHhcC-CCCcEEEEe
Q psy17227        130 K-ITQASIVFVNNFAFGPTVDHALKERFQDL-KDGARIVSS  168 (268)
Q Consensus       130 ~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~L-kpGG~~i~~  168 (268)
                      . ...+|+++-. .    .-...+...++.| ++||+++..
T Consensus       227 ~t~g~~d~v~d~-~----g~~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          227 YTKNNLRYALDC-I----TNVESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             HTTTCCCEEEES-S----CSHHHHHHHHHHSCTTCEEEEES
T ss_pred             HccCCccEEEEC-C----CchHHHHHHHHHhhcCCCEEEEE
Confidence            0 0125666632 1    1135577788888 699999986

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.35  E-value=2.5  Score=32.03  Aligned_cols=97  Identities=9%  Similarity=0.096  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EK  130 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~  130 (268)
                      ..+|+=+||  |.++..+++.   .|.. |+.+|.++. .....    +..   .   ....+.++.||..+...-  ..
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~-V~vid~~~~-~~~~~----~~~---~---~~~~~~~i~gd~~~~~~l~~a~   68 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQN-VTVISNLPE-DDIKQ----LEQ---R---LGDNADVIPGDSNDSSVLKKAG   68 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCC-EEEEECCCH-HHHHH----HHH---H---HCTTCEEEESCTTSHHHHHHHT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCC-EEEEECCCh-HHHHH----HHH---h---hcCCCeEEEcCCCCHHHHHHcC
Confidence            345777775  7777777654   3665 999999852 01111    111   0   013588999999875421  12


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++|++++.  .........+....+.+.|...+++.
T Consensus        69 i~~ad~vi~~--~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           69 IDRCRAILAL--SDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             TTTCSEEEEC--SSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             hhhCCEEEEe--cCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            4456777653  12233455556667788777777763

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=88.32  E-value=0.58  Score=42.07  Aligned_cols=43  Identities=14%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-------CCcEEEEEeCCCC
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAAT-------GCKICWGVEKADL   90 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~-------~~~~v~GiD~s~~   90 (268)
                      .+.++....-+|+++|.|.|.++..+.+..       ...+++-||+|+.
T Consensus        73 w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~  122 (387)
T 1zkd_A           73 WKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  122 (387)
T ss_dssp             HHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             HHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHH
Confidence            334554455579999999999988776542       2226899999985

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.80  E-value=1  Score=39.35  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             HHHHHcCCCCC-CEEEEE-cCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         46 RMIDQINATPD-DVFVDL-GSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        46 ~ll~~l~~~~~-~~vLDi-GCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .++...+ .++ ++||=. ||| .|.++..+|+..|+. |++++.++.  +.+.+    +    ..|.   . .++  |.
T Consensus       155 ~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~-Vi~~~~~~~--~~~~~----~----~~Ga---~-~~~--~~  216 (349)
T 3pi7_A          155 AMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFR-PIVTVRRDE--QIALL----K----DIGA---A-HVL--NE  216 (349)
T ss_dssp             HHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESCGG--GHHHH----H----HHTC---S-EEE--ET
T ss_pred             HHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHHH----H----HcCC---C-EEE--EC
Confidence            4455555 566 566543 443 466777888888985 999999886  22221    1    2232   1 122  22


Q ss_pred             CCCcccccc------cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKI------TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~------~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+..+.+..      ..+|+++-..-      ...+....+.|+|||+++..
T Consensus       217 ~~~~~~~~v~~~~~~~g~D~vid~~g------~~~~~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          217 KAPDFEATLREVMKAEQPRIFLDAVT------GPLASAIFNAMPKRARWIIY  262 (349)
T ss_dssp             TSTTHHHHHHHHHHHHCCCEEEESSC------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CcHHHHHHHHHHhcCCCCcEEEECCC------ChhHHHHHhhhcCCCEEEEE
Confidence            221111110      13567764321      22346778999999999986

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.48  E-value=5  Score=33.28  Aligned_cols=89  Identities=9%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             CEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ++||=.||  |.++..+++..   |.. |++++.++.  ....    +.         ..+++++.+|+.++.    ..+
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~-V~~~~r~~~--~~~~----~~---------~~~~~~~~~D~~d~~----~~~   63 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWR-IIGTSRNPD--QMEA----IR---------ASGAEPLLWPGEEPS----LDG   63 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCE-EEEEESCGG--GHHH----HH---------HTTEEEEESSSSCCC----CTT
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCE-EEEEEcChh--hhhh----Hh---------hCCCeEEEecccccc----cCC
Confidence            68999994  99888887754   554 999999874  1111    11         247999999999865    345


Q ss_pred             eEEEEEeccccC-cC-HHHHHHHHHhcCCCC-cEEEE
Q psy17227        134 ASIVFVNNFAFG-PT-VDHALKERFQDLKDG-ARIVS  167 (268)
Q Consensus       134 ~dvv~~~~~~~~-~~-~~~~l~e~~r~LkpG-G~~i~  167 (268)
                      +|+|+..+.... .+ ....+.+..+..+.| .+||.
T Consensus        64 ~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~  100 (286)
T 3ius_A           64 VTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGY  100 (286)
T ss_dssp             CCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEE
T ss_pred             CCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEE
Confidence            677776544322 22 223344444433222 46653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.08  E-value=0.41  Score=43.31  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++.+|+=+|+|. |..+..+++..|+. |+++|.++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAV-VSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcCCHH
Confidence            568999999985 44455667778886 999999986

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=86.83  E-value=2.9  Score=36.53  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             cCCCCC-CEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         51 INATPD-DVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        51 l~~~~~-~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      .++++| ++||=+|+  |.|.+++.+|+..|+. ++++.-++.
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~-vi~~~~~~~  203 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRP  203 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCT
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCcc
Confidence            478999 99999997  5688889999988986 788876653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.01  E-value=1.1  Score=40.82  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHh---C--CcEEEEEeCCCChhH
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAAT---G--CKICWGVEKADLPAK   93 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~---~--~~~v~GiD~s~~~~~   93 (268)
                      .-+|+|+|.|+|.++..+.+..   +  ..+++-||+|+....
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~  180 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRA  180 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHH
Confidence            4689999999999988776533   2  225899999997433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.98  E-value=2.1  Score=34.51  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             EEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cccc
Q psy17227         58 VFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKIT  132 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~~  132 (268)
                      +|+=+|+  |.++..+|+.   .|.. |+.+|.++.  .+..    +.+        ...+.++.||..+...-  ....
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~-v~vid~~~~--~~~~----l~~--------~~~~~~i~gd~~~~~~l~~a~i~   64 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYG-VVIINKDRE--LCEE----FAK--------KLKATIIHGDGSHKEILRDAEVS   64 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCC-EEEEESCHH--HHHH----HHH--------HSSSEEEESCTTSHHHHHHHTCC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHH--HHHH----HHH--------HcCCeEEEcCCCCHHHHHhcCcc
Confidence            4555665  6777766654   3565 999999874  2211    111        12567899999885421  1234


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|++++.  .-.+.....+....+.+.|...+++.
T Consensus        65 ~ad~vi~~--~~~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           65 KNDVVVIL--TPRDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             TTCEEEEC--CSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             cCCEEEEe--cCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence            56777653  12222344455666766677777653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=85.60  E-value=0.99  Score=41.91  Aligned_cols=88  Identities=18%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         53 ATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ..+|++|+=+|+|. |..+...++.+|.. |+++|.++.  ....    +.    ..|     +++  .++.     +-.
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~-Viv~d~~~~--~~~~----A~----~~G-----a~~--~~l~-----e~l  327 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGAR-VSVTEIDPI--NALQ----AM----MEG-----FDV--VTVE-----EAI  327 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHH--HHHH----HH----HTT-----CEE--CCHH-----HHG
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcC-----CEE--ecHH-----HHH
Confidence            56899999999864 33344445557875 999999974  2111    11    122     222  1221     112


Q ss_pred             cceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|+...-  .+.   .+ .+.++.+||||+++..
T Consensus       328 ~~aDvVi~atg--t~~---~i~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          328 GDADIVVTATG--NKD---IIMLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             GGCSEEEECSS--SSC---SBCHHHHHHSCTTCEEEEC
T ss_pred             hCCCEEEECCC--CHH---HHHHHHHHhcCCCcEEEEe
Confidence            24677765321  111   12 3567789999999865

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=84.73  E-value=1.8  Score=37.91  Aligned_cols=101  Identities=20%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             HHHHcCCC-CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINAT-PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~-~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .+...++. +|++||=+|+|. |.++..+|+..|+. |++++.++.  +.+.    +.   +..|.  ..  ++  |..+
T Consensus       171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~-Vi~~~~~~~--~~~~----~~---~~lGa--~~--vi--~~~~  234 (357)
T 2cf5_A          171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHH-VTVISSSNK--KREE----AL---QDLGA--DD--YV--IGSD  234 (357)
T ss_dssp             HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSTT--HHHH----HH---TTSCC--SC--EE--ETTC
T ss_pred             HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeCChH--HHHH----HH---HHcCC--ce--ee--cccc
Confidence            44566888 999999999863 66778888888985 999999985  2221    11   02232  11  12  1111


Q ss_pred             Cc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .. .......+|+++-..- . +   ..+...++.|+|||+++..
T Consensus       235 ~~~~~~~~~g~D~vid~~g-~-~---~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          235 QAKMSELADSLDYVIDTVP-V-H---HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             HHHHHHSTTTEEEEEECCC-S-C---CCSHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHhcCCCCEEEECCC-C-h---HHHHHHHHHhccCCEEEEe
Confidence            11 1111124677764221 1 1   1245667899999999975

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=84.41  E-value=3.3  Score=37.94  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCCCHHH-HHHHHHhCCcEEEEEeCCCChhHHHHHHHHHH----HHHHHhcc------ccccEEEEEcCCCC
Q psy17227         56 DDVFVDLGSGVGQVV-LQVAAATGCKICWGVEKADLPAKYAEMHTVFK----RWMQWYGK------RHGEFRLVKGDFLT  124 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~-~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~----~~~~~~~~------~~~~i~~~~gD~~~  124 (268)
                      -++|.=||+|.=+.+ .......|.. |+++|.++..  ++++++...    +... .|.      .....++ ..|.. 
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~-V~l~D~~~~~--~~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~i-~~~~~-  110 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQ--LDAAKKIITFTLEKEAS-RAHQNGQASAKPKLRF-SSSTK-  110 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSHHH--HHHHHHHHHHHHHHHHH-HHHHTTCCCCCCCEEE-ESCGG-
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHH--HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhhh-cCCHH-
Confidence            357999999873332 2222335665 9999999853  332222211    1110 110      0112333 33431 


Q ss_pred             CcccccccceEEEEEeccccCcCH---HHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTV---DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~---~~~l~e~~r~LkpGG~~i~~  168 (268)
                           ...++|+|+....   .+.   ...+.++...++||..++++
T Consensus       111 -----~~~~aDlVIeaVp---e~~~~k~~v~~~l~~~~~~~~ii~sn  149 (463)
T 1zcj_A          111 -----ELSTVDLVVEAVF---EDMNLKKKVFAELSALCKPGAFLCTN  149 (463)
T ss_dssp             -----GGTTCSEEEECCC---SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             -----HHCCCCEEEEcCC---CCHHHHHHHHHHHHhhCCCCeEEEeC
Confidence                 1235778776432   332   45667777889998888763

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=84.25  E-value=13  Score=32.39  Aligned_cols=116  Identities=10%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHH---HHHHhc--------------cccccEE
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKR---WMQWYG--------------KRHGEFR  116 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~---~~~~~~--------------~~~~~i~  116 (268)
                      +...|+-||||.=.....+.... ....++=||..+.   ++.-++.+.+   ..+..|              ....+.+
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~v---i~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~  166 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMI---VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYA  166 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHH---HHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHH---HHHHHHHHhhchhhhhhhcccccccccccccccCCCCceE
Confidence            45689999999999988876531 2234788888652   2211111111   000111              0135789


Q ss_pred             EEEcCCCCCc-ccc-------cccceEEEEEecc--ccCcCHHHH-HHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        117 LVKGDFLTEE-HRE-------KITQASIVFVNNF--AFGPTVDHA-LKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       117 ~~~gD~~~l~-~~~-------~~~d~dvv~~~~~--~~~~~~~~~-l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      ++..|+.++. +..       +.....+++++.+  ++.++.... ++.+.+.. |+|.+++++++.|.
T Consensus       167 ~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~  234 (334)
T 3iei_A          167 VIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG  234 (334)
T ss_dssp             EEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT
T ss_pred             EEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC
Confidence            9999998842 111       1112346777765  344544444 44444444 66777777777654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=84.18  E-value=0.55  Score=41.72  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-cccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-HREKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~~~~~~  132 (268)
                      ++++|+=+|+|. |..+...++..|+. |+++|.++.  ..+.    +.+   ..+.   .+..   |..+.. +.+-..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~-V~~~d~~~~--~~~~----~~~---~~g~---~~~~---~~~~~~~l~~~~~  228 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQ-VTILDVNHK--RLQY----LDD---VFGG---RVIT---LTATEANIKKSVQ  228 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HHH---HTTT---SEEE---EECCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCHH--HHHH----HHH---hcCc---eEEE---ecCCHHHHHHHHh
Confidence            458999999852 33334445557885 999999974  2221    111   1121   2222   222211 111122


Q ss_pred             ceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+++....... ..+.-..++..+.+||||+++..
T Consensus       229 ~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             HCSEEEECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred             CCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence            4677765322111 11111246778889999998864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=83.91  E-value=6.6  Score=31.83  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EK  130 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~  130 (268)
                      ...++|+=+||  |.++..+++..... .|+++|.++.  .+..    +         . ..+.++.||..+...-  .+
T Consensus         7 ~~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~--~~~~----~---------~-~~~~~i~gd~~~~~~l~~a~   68 (234)
T 2aef_A            7 AKSRHVVICGW--SESTLECLRELRGSEVFVLAEDENV--RKKV----L---------R-SGANFVHGDPTRVSDLEKAN   68 (234)
T ss_dssp             ---CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGG--HHHH----H---------H-TTCEEEESCTTCHHHHHHTT
T ss_pred             CCCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHH--HHHH----H---------h-cCCeEEEcCCCCHHHHHhcC
Confidence            34567888887  68888888765331 1899998875  2211    1         1 2578999999875421  22


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++|++++.  ...+..........+.+.|+..+++.
T Consensus        69 i~~ad~vi~~--~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           69 VRGARAVIVD--LESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             CTTCSEEEEC--CSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             cchhcEEEEc--CCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            3456777653  12222344455667888888777754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=83.32  E-value=7.6  Score=31.76  Aligned_cols=77  Identities=9%  Similarity=-0.101  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHH----hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAA----TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK  130 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~----~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~  130 (268)
                      +++++|=.| |+|+++..+++.    .|+. |+.++.++.  ......+.++    ..   ..++.++.+|+.+...-..
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~-V~~~~r~~~--~~~~~~~~l~----~~---~~~~~~~~~Dl~~~~~~~~   71 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGD-VVLTARDVT--RGQAAVQQLQ----AE---GLSPRFHQLDIDDLQSIRA   71 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSE-EEEEESSHH--HHHHHHHHHH----HT---TCCCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCe-EEEEeCChH--HHHHHHHHHH----hc---CCeeEEEECCCCCHHHHHH
Confidence            456788777 567787777654    3554 899998753  2222222222    11   2478899999988531111


Q ss_pred             --------ccceEEEEEecc
Q psy17227        131 --------ITQASIVFVNNF  142 (268)
Q Consensus       131 --------~~d~dvv~~~~~  142 (268)
                              ....|+++.++.
T Consensus        72 ~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           72 LRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             HHHHHHHHHSSEEEEEECCC
T ss_pred             HHHHHHHhcCCCCEEEECCc
Confidence                    114677776643

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=82.92  E-value=0.57  Score=42.05  Aligned_cols=35  Identities=29%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++.+|+=||+|. |..+..+++..|+. |+++|.++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~-V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAK-TTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCE-EEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence            578999999985 44455666778986 999999985

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.26  E-value=0.46  Score=42.46  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ++.+|+=+|+|. |..+...++..|.. |+++|.++.  ..+.    +++   ..|.   .+.....+..+  +.+....
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~-V~~~d~~~~--~l~~----~~~---~~g~---~~~~~~~~~~~--l~~~l~~  231 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGAT-VTVLDINID--KLRQ----LDA---EFCG---RIHTRYSSAYE--LEGAVKR  231 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HHH---HTTT---SSEEEECCHHH--HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCCHH--HHHH----HHH---hcCC---eeEeccCCHHH--HHHHHcC
Confidence            578999999953 33344445567884 999999974  2211    111   1121   22221111111  1111224


Q ss_pred             eEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|+.....-. ....-...+..+.+||||+++-.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            577765321111 11111145677889999999864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=82.23  E-value=12  Score=31.60  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc--
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--  129 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--  129 (268)
                      .++++|=.|++ |+++..+|+.   .|+. |+.++.+.......+..+..+    ..   ..++.++.+|+.+...-.  
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~Dv~d~~~v~~~  118 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREGAD-VAINYLPAEEEDAQQVKALIE----EC---GRKAVLLPGDLSDESFARSL  118 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHHHHHHH----HT---TCCEEECCCCTTSHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCE-EEEEeCCcchhHHHHHHHHHH----Hc---CCcEEEEEecCCCHHHHHHH
Confidence            46789999964 6666666654   3665 888888743222222222111    22   247899999998854111  


Q ss_pred             ------cccceEEEEEeccccC--c-----C---HHH-----------HHHHHHhcCCCCcEEEEe
Q psy17227        130 ------KITQASIVFVNNFAFG--P-----T---VDH-----------ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ------~~~d~dvv~~~~~~~~--~-----~---~~~-----------~l~e~~r~LkpGG~~i~~  168 (268)
                            .....|+++.++-...  .     +   +..           ..+.+...++++|+||..
T Consensus       119 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          119 VHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence                  1124677776654211  1     1   111           123444677888998865

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=82.08  E-value=7.6  Score=34.40  Aligned_cols=105  Identities=11%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH--HHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE--MHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~--~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      -+++.+. ...+.+||.||.+.|.++..++..   . ++.+.=|    .++.  ...++.    ..+.....+++... .
T Consensus        28 ~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~---~-~~~~~ds----~~~~~~~~~n~~----~~~~~~~~~~~~~~-~   94 (375)
T 4dcm_A           28 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH---K-PYSIGDS----YISELATRENLR----LNGIDESSVKFLDS-T   94 (375)
T ss_dssp             HHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG---C-CEEEESC----HHHHHHHHHHHH----HTTCCGGGSEEEET-T
T ss_pred             HHHHhhhhccCCCCEEEECCCCCHHHHhhccC---C-ceEEEhH----HHHHHHHHHHHH----HcCCCccceEeccc-c
Confidence            3566642 335567999999999998776532   2 4566333    2222  223332    34444345666432 2


Q ss_pred             CCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++     .++|++.+...=........+..+...|+||+.+++.
T Consensus        95 ~~~~-----~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A           95 ADYP-----QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             SCCC-----SSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             cccc-----cCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            2222     2456666531111122444567777899999999865

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=81.97  E-value=1  Score=40.62  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++.+|+=+|+|. |..+..+++..|+. |+.+|.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~v~D~~~~  206 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAI-VRAFDTRPE  206 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHH
Confidence            578999999975 33455566678885 999999985

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=81.91  E-value=3.2  Score=35.89  Aligned_cols=92  Identities=14%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--cccc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REKI  131 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~~  131 (268)
                      .++++=+||  |..+..+++..  ... |+.+|.+++...       ++         ...+.+++||..+...  ..+.
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-------~~---------~~~~~~i~gd~~~~~~L~~a~i  175 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-------VL---------RSGANFVHGDPTRVSDLEKANV  175 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-------HH---------HTTCEEEESCTTSHHHHHHTCS
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-------HH---------hCCcEEEEeCCCCHHHHHhcCh
Confidence            457877776  78888887754  223 899999986222       11         1367899999988652  1234


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++|.+++..  ..++..-......+.+.|..+++..
T Consensus       176 ~~a~~vi~~~--~~d~~n~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          176 RGARAVIVDL--ESDSETIHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             TTEEEEEECC--SSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             hhccEEEEcC--CccHHHHHHHHHHHHHCCCCeEEEE
Confidence            5677777631  1222333345566888888777764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=81.88  E-value=2.6  Score=37.09  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             HHHHHcCCC-CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINAT-PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~-~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+...++. +|++||=+|+|. |.++..+|+..|+. |++++.++.  +.+.+    .+   ..|.   . .++  |..
T Consensus       177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~-Vi~~~~~~~--~~~~~----~~---~lGa---~-~v~--~~~  240 (366)
T 1yqd_A          177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSK-VTVISTSPS--KKEEA----LK---NFGA---D-SFL--VSR  240 (366)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCGG--GHHHH----HH---TSCC---S-EEE--ETT
T ss_pred             HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHHH----HH---hcCC---c-eEE--ecc
Confidence            345567888 999999999864 66677888888885 999999875  22211    10   1221   1 122  222


Q ss_pred             CCc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.. ...-...+|+++-..- . +   ..+...++.|++||+++..
T Consensus       241 ~~~~~~~~~~~~D~vid~~g-~-~---~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          241 DQEQMQAAAGTLDGIIDTVS-A-V---HPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             CHHHHHHTTTCEEEEEECCS-S-C---CCSHHHHHHEEEEEEEEEC
T ss_pred             CHHHHHHhhCCCCEEEECCC-c-H---HHHHHHHHHHhcCCEEEEE
Confidence            211 1111124677764321 1 1   1245667889999999875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=81.79  E-value=1.5  Score=39.13  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ++.+|+=+|+|. |..+..+++..|+. |+.+|.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence            688999999975 33355566678886 999999985

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=80.95  E-value=0.57  Score=39.42  Aligned_cols=52  Identities=2%  Similarity=-0.028  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCC-c-ccccccceEEEEEeccccCc---------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        115 FRLVKGDFLTE-E-HREKITQASIVFVNNFAFGP---------------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       115 i~~~~gD~~~l-~-~~~~~~d~dvv~~~~~~~~~---------------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++++||+.+. . +++  ..+|+|++...+...               -....+.+++++|||||.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~~--~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVEN--KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSCT--TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccc--cccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            34678887542 1 122  246788887654332               2345678888999999998875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=80.64  E-value=5.2  Score=31.78  Aligned_cols=94  Identities=14%  Similarity=0.056  Sum_probs=55.2

Q ss_pred             CEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         57 DVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ++||=.|+ +|.++..+++.   .|.. |++++.++.  ....             ....+++++.+|+.+... .....
T Consensus         1 MkilVtGa-tG~iG~~l~~~L~~~g~~-V~~~~R~~~--~~~~-------------~~~~~~~~~~~D~~d~~~-~~~~~   62 (224)
T 3h2s_A            1 MKIAVLGA-TGRAGSAIVAEARRRGHE-VLAVVRDPQ--KAAD-------------RLGATVATLVKEPLVLTE-ADLDS   62 (224)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH-------------HTCTTSEEEECCGGGCCH-HHHTT
T ss_pred             CEEEEEcC-CCHHHHHHHHHHHHCCCE-EEEEEeccc--cccc-------------ccCCCceEEecccccccH-hhccc
Confidence            35777775 57777666654   3655 999998863  1111             012478999999987654 22335


Q ss_pred             eEEEEEecccc-CcC----HHHHHHHHHhcCCC-CcEEEEe
Q psy17227        134 ASIVFVNNFAF-GPT----VDHALKERFQDLKD-GARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~-~~~----~~~~l~e~~r~Lkp-GG~~i~~  168 (268)
                      +|+|+.+.... .+.    .......+.+.++. |++++..
T Consensus        63 ~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           63 VDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             CSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             CCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            67777655432 211    22234556665544 5777754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=80.61  E-value=20  Score=30.09  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc--
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--  129 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--  129 (268)
                      .++++|=.|++ |+++..+|+.   .|+. |+.++.++.  ....   ...+....   ...++.++.+|+.+..--.  
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~-V~~~~r~~~--~~~~---~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~  115 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGAN-IAIAYLDEE--GDAN---ETKQYVEK---EGVKCVLLPGDLSDEQHCKDI  115 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCE-EEEEESSCH--HHHH---HHHHHHHT---TTCCEEEEESCTTSHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCE-EEEEeCCch--HHHH---HHHHHHHh---cCCcEEEEECCCCCHHHHHHH
Confidence            46789999965 5566666554   3665 899999874  1111   11111111   1247999999998854111  


Q ss_pred             ------cccceEEEEEecccc-C-c-----C---HHH-----------HHHHHHhcCCCCcEEEEe
Q psy17227        130 ------KITQASIVFVNNFAF-G-P-----T---VDH-----------ALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ------~~~d~dvv~~~~~~~-~-~-----~---~~~-----------~l~e~~r~LkpGG~~i~~  168 (268)
                            .....|+++.++-.. . .     +   +..           ..+.+...++++|+||..
T Consensus       116 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          116 VQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence                  112467777664321 1 1     1   111           123445667888988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-51
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-48
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	4e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	9e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	9e-04

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (427), Expect = 2e-51
 Identities = 131/189 (69%), Positives = 155/189 (82%), Gaps = 1/189 (0%)

Query: 2   PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
           PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I  T DD+FVD
Sbjct: 98  PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 157

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA-EMHTVFKRWMQWYGKRHGEFRLVKG 120
           LGSGVGQVVLQVAAAT CK  +GVEKAD+PAKYA  M   F++WM+WYGK+H E+ L +G
Sbjct: 158 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217

Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
           DFL+EE RE+I   S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI  
Sbjct: 218 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 277

Query: 181 RNLTDGGKK 189
           RNL+D G  
Sbjct: 278 RNLSDIGTI 286

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (414), Expect = 1e-48
 Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 25/259 (9%)

Query: 3   SRGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
            R  +   +   Y +S+  +  KL  Y+ FS +VYGE   + +S +  Q      D F+D
Sbjct: 163 PRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMD 222

Query: 62  LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA-EMHTVFKRWMQWYGKRHGEFRL-VK 119
           LGSGVG  V+Q A   GC + +G E  D  +      +   K+  + YG R       +K
Sbjct: 223 LGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282

Query: 120 GDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRI 178
             F+      E I Q  ++ VNNF F   ++  +++  Q  K G +I+S KS   L ++I
Sbjct: 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQI 342

Query: 179 TDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHT-ELEIPPTPAETPYSLQMLLD 237
              N+ +                        L V      E  +  T +   Y +  +++
Sbjct: 343 NFYNVENI--------------------FNRLKVQRYDLKEDSVSWTHSGGEYYISTVME 382

Query: 238 ILRNQYLAMIERLKSEKYK 256
            +     +   R +  +  
Sbjct: 383 DVDESLFSPAARGRRNRGT 401

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 11/126 (8%)

Query: 44  ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI-CWGVEKADLPAKYAEMHTVFK 102
           I   +      P    + LG   G     V+   G +   +G+E +    +         
Sbjct: 62  IMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV--- 118

Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG 162
                  +       + GD    E    +     V   + A        +      LK G
Sbjct: 119 -------EERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171

Query: 163 ARIVSS 168
              + +
Sbjct: 172 GYGMIA 177

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 44  ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI-CWGVEKADLPAKYAEMHTVFK 102
           I+ ++  ++  P D  ++ GSG G + L ++ A G +      E        A+ +  +K
Sbjct: 87  INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN--YK 144

Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKD 161
            W   +   H E      DF+ ++         S+ F             L   +  LK 
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 204

Query: 162 GARIVSSKSFCP 173
           G        +  
Sbjct: 205 GGVCA---VYVV 213

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 9e-04
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)

Query: 27  VYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVE 86
           ++ PF+         +  + +   +   P    +DLGSG G+++   A   G     G++
Sbjct: 13  IHNPFTE--------EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG-TGID 63

Query: 87  KADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP 146
            + L    A+         +     H +            +           V       
Sbjct: 64  MSSLFTAQAKRRAEELGVSERVHFIHNDA---------AGYVANEKCDVAACVGATWIAG 114

Query: 147 TVDHALKERFQDLKDGARIV 166
               A +   Q LK G  ++
Sbjct: 115 GFAGAEELLAQSLKPGGIML 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.98
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.98
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.88
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.86
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.86
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.84
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.84
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.79
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.74
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.73
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.72
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.72
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.72
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.72
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.71
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.7
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.7
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.7
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.7
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.67
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.65
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.64
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.64
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.63
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.62
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.61
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.6
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.6
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.6
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.6
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.56
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.54
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.51
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.51
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.48
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.48
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.48
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.39
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.37
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.34
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.33
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.3
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.28
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.26
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.23
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.21
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.2
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.2
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.15
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.15
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.13
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.13
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.12
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.97
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.97
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.91
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.91
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.89
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.85
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.84
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.79
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.77
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.77
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.72
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.65
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.61
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.51
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.51
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.49
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.46
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.43
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.41
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.4
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.38
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.37
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.35
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.2
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.19
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.19
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.18
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.17
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.04
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.94
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.68
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.58
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.55
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.5
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.47
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.43
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.4
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.24
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.18
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.76
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.68
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.39
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.33
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.2
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.19
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.1
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.03
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.94
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.85
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.79
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.76
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.53
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.41
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.2
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.97
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.85
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.85
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.83
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.45
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.97
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	93.15
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.44
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.3
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.19
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	91.96
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.5
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.61
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	90.11
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	87.58
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.84
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	84.3
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.98

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.8e-32  Score=240.01  Aligned_cols=183  Identities=71%  Similarity=1.209  Sum_probs=165.7

Q ss_pred             CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcE
Q psy17227          2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI   81 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~   81 (268)
                      +++.++++++.++|++.++++..++.|.+|++.+||++....+..++++++++++++|||||||+|.+++.+|+..++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~  177 (328)
T d1nw3a_          98 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKH  177 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCGGGGGCSCSSSTTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSE
T ss_pred             ccHHHHHHHHhhhhhhccCCHHHhccccCCCCCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCe
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEeCCCChhHHHH-HHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCC
Q psy17227         82 CWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLK  160 (268)
Q Consensus        82 v~GiD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~Lk  160 (268)
                      ++|||+|+.++.+|+ +.+.++.+++..|....+++|++||+.++|+.+..+++|+|++++++|++++...+.+++|+||
T Consensus       178 ~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LK  257 (328)
T d1nw3a_         178 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK  257 (328)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCC
Confidence            999999999888887 4456666777778777899999999999999888888999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCccccccccc
Q psy17227        161 DGARIVSSKSFCPLNFRITDRNLT  184 (268)
Q Consensus       161 pGG~~i~~~~~~~~~~~~~~~~~~  184 (268)
                      |||++|+++++.|..+.....++.
T Consensus       258 pGg~iv~~~~~~~~~~~~~~~~l~  281 (328)
T d1nw3a_         258 EGGRIVSSKPFAPLNFRINSRNLS  281 (328)
T ss_dssp             TTCEEEESSCSSCTTCCCCTTCTT
T ss_pred             CCcEEEEecccCCCCcccchhhcc
Confidence            999999998888876655544443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-31  Score=243.28  Aligned_cols=186  Identities=30%  Similarity=0.533  Sum_probs=157.3

Q ss_pred             CchHHHHHHHHHHHHhhc-CCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc
Q psy17227          2 PSRGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK   80 (268)
Q Consensus         2 ~~~~~~~~~~~~~y~~~~-~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~   80 (268)
                      .+|+++++|+.++|++.+ +++++|++|.+|++.+|||+.+.++..+++++++++|++|||||||+|.+++.+|+.+|+.
T Consensus       162 ~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~  241 (406)
T d1u2za_         162 IPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCA  241 (406)
T ss_dssp             EEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHhhcccccCChHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCC
Confidence            378999999999999999 5999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEeCCCChhHHHHHH-HHHHHHHHHhccccccEEE-EEcCCCCCcc-cccccceEEEEEeccccCcCHHHHHHHHHh
Q psy17227         81 ICWGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRL-VKGDFLTEEH-REKITQASIVFVNNFAFGPTVDHALKERFQ  157 (268)
Q Consensus        81 ~v~GiD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~i~~-~~gD~~~l~~-~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r  157 (268)
                      +|+|||+|+.|+.+|+.+ +.+..++...+.....+.+ ..+++.+.++ .+...++|++++++++|.+++...+.+++|
T Consensus       242 ~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r  321 (406)
T d1u2za_         242 LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQ  321 (406)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHT
T ss_pred             eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHH
Confidence            899999999988888732 3444455555655555555 5677776553 334456889999999999999999999999


Q ss_pred             cCCCCcEEEEeCCCCCCCcccccccccCCC
Q psy17227        158 DLKDGARIVSSKSFCPLNFRITDRNLTDGG  187 (268)
Q Consensus       158 ~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~  187 (268)
                      +|||||+||+.++++|..+.....+...+.
T Consensus       322 ~LKPGGrIVs~~~~~~~~~~it~r~~~~~~  351 (406)
T d1u2za_         322 TAKVGCKIISLKSLRSLTYQINFYNVENIF  351 (406)
T ss_dssp             TCCTTCEEEESSCSSCTTCCCCSSSTTCGG
T ss_pred             hcCCCcEEEEecccCCCchhhhhhccccch
Confidence            999999999999998877766555555443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.88  E-value=5.4e-23  Score=178.10  Aligned_cols=117  Identities=16%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +....++.++.+|||||||+|.++..+|+++++. |+|||+|+.++..++  ++    +...|.. .+++|+++|+.++|
T Consensus        59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvD~s~~~i~~a~--~~----~~~~gl~-~~v~~~~~d~~~l~  130 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVS-IDCLNIAPVQNKRNE--EY----NNQAGLA-DNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HH----HHHHTCT-TTEEEEECCTTSCS
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcE-EEEEeccchhhhhhh--cc----ccccccc-cccccccccccccc
Confidence            4445589999999999999999999999888876 999999997555443  22    2234543 58999999999999


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      +++++||+ |+++..++|.+++...+++++++|||||+|+++++..
T Consensus       131 ~~~~sfD~-V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         131 CEDNSYDF-IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             SCTTCEEE-EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ccccccch-hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            88776654 4445566799999999999999999999999875443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.7e-22  Score=170.13  Aligned_cols=121  Identities=18%  Similarity=0.262  Sum_probs=96.2

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      .++.-+++.++++||++|||||||+|.++..+++. +.. |+|||+|+.|+..|+  ++++    ..+  ..++.++++|
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~-v~gvD~S~~~l~~A~--~~~~----~~~--~~~~~~~~~d   72 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQE-CIGVDATKEMVEVAS--SFAQ----EKG--VENVRFQQGT   72 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSE-EEEEESCHHHHHHHH--HHHH----HHT--CCSEEEEECB
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCe-EEEEeCChhhhhhhh--hhhc----ccc--cccccccccc
Confidence            34566889999999999999999999999999875 444 999999998665554  3333    223  3589999999


Q ss_pred             CCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        122 FLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                      ++++|+++++|  |+|++. .++|.+++...++++.|+|||||++++++...+.
T Consensus        73 ~~~~~~~~~~f--D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~  124 (234)
T d1xxla_          73 AESLPFPDDSF--DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE  124 (234)
T ss_dssp             TTBCCSCTTCE--EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             ccccccccccc--ceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence            99999987755  556654 4567889999999999999999999987555443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=3.1e-22  Score=167.56  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=93.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +.++++.++++++++|||||||+|.++..+++. +.. |+|+|+|+.|+..|+  +++.    ..+  ..+++|+++|++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~-v~gvD~s~~~i~~A~--~~~~----~~~--~~~i~~~~~d~~   73 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKK-VVAFDLTEDILKVAR--AFIE----GNG--HQQVEYVQGDAE   73 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSE-EEEEESCHHHHHHHH--HHHH----HTT--CCSEEEEECCC-
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCE-EEEEECCHHHHhhhh--hccc----ccc--cccccccccccc
Confidence            578999999999999999999999999988865 554 999999998655544  3332    223  468999999999


Q ss_pred             CCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        124 TEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      ++|+++++|  |+|++. .++|.+++...+++++|+|||||++++.++..|
T Consensus        74 ~l~~~~~~f--D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  122 (231)
T d1vl5a_          74 QMPFTDERF--HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP  122 (231)
T ss_dssp             CCCSCTTCE--EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred             ccccccccc--ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            999887655  556554 556888999999999999999999998754444

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.1e-22  Score=166.82  Aligned_cols=123  Identities=16%  Similarity=0.151  Sum_probs=99.1

Q ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +..+..+..+++.+++.||++|||||||+|.++..+++..|+. |+|||+|+.|+..++  ++++    ..|.. ++++|
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~-v~GvD~s~~~~~~ar--~~~~----~~gl~-~~v~~   87 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAK--RRAE----ELGVS-ERVHF   87 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCE-EEEEESCHHHHHHHH--HHHH----HTTCT-TTEEE
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCE-EEEEecccchhhHHH--HHHH----Hhhcc-ccchh
Confidence            4566788899999999999999999999999999999888876 999999998555544  3332    34542 47999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +++|+.++. .++.||. |+++..++|.+++...++++.|+|||||++++.++
T Consensus        88 ~~~d~~~~~-~~~~fD~-v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          88 IHNDAAGYV-ANEKCDV-AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             EESCCTTCC-CSSCEEE-EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hhhHHhhcc-ccCceeE-EEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            999999974 3555544 44455667889999999999999999999998744

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=5.6e-22  Score=171.80  Aligned_cols=191  Identities=12%  Similarity=0.146  Sum_probs=124.8

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++++++++||++|||||||+|+++..+++.+|+. |+|||+|+.+...++  +    +++..+. ..++.+...|.
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~-v~gi~ls~~q~~~a~--~----~~~~~~l-~~~~~~~~~d~  111 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVN-VIGLTLSKNQHARCE--Q----VLASIDT-NRSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--H----HHHTSCC-SSCEEEEESCG
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCcee-EEEecchHHHHHHHH--H----HHHhhcc-ccchhhhhhhh
Confidence            45679999999999999999999999999999888986 999999997544433  3    2334454 35789999998


Q ss_pred             CCCcccccccceEEEEEeccccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCCCCccccc----------ccccCCCCCC
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGP--TVDHALKERFQDLKDGARIVSSKSFCPLNFRITD----------RNLTDGGKKV  190 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~~----------~~~~~i~~~l  190 (268)
                      .+++   +.||. ++++..+.|..  +....|+++.++|||||++++........+....          ...+.|.+.+
T Consensus       112 ~~~~---~~fD~-i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyi  187 (280)
T d2fk8a1         112 EDFA---EPVDR-IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEI  187 (280)
T ss_dssp             GGCC---CCCSE-EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhc---cchhh-hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhc
Confidence            7665   34666 77778877764  4578899999999999999875322211111000          0112223333


Q ss_pred             CCCCcccccccccc---cccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHH
Q psy17227        191 PPGRGCVDQTLTSL---STATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKK  257 (268)
Q Consensus       191 ~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (268)
                      .  ||+..+....+   .+..++.+         ......+++|.++ +..|+.+|.+.++.+.+..+.+
T Consensus       188 f--Pgg~lPS~~~l~~~~e~aGf~v---------~~~~~~~~hYa~T-L~~W~~~f~~~~~~i~~~~~~~  245 (280)
T d2fk8a1         188 F--PGGRLPSTEMMVEHGEKAGFTV---------PEPLSLRPHYIKT-LRIWGDTLQSNKDKAIEVTSEE  245 (280)
T ss_dssp             S--TTCCCCCHHHHHHHHHHTTCBC---------CCCEECHHHHHHH-HHHHHHHHHHTHHHHHHHSCHH
T ss_pred             c--CCCcccchHhhhhhHHhhcccc---------ceeeecccCHHHH-HHHHHHHHHHHHHHHHHhcCHH
Confidence            2  44333333222   22233322         2222235666677 4669999999888877766654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=1.8e-21  Score=168.73  Aligned_cols=113  Identities=12%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..++++++++||++|||||||+|++++++|+.+|+. |+||++|+.+...++  +    ++.+.|. ..++++..+|+.
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~-v~git~s~~Q~~~a~--~----~~~~~g~-~~~v~~~~~d~~  122 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVN-VVGLTLSKNQANHVQ--Q----LVANSEN-LRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--H----HHHTCCC-CSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcc-eEEEeccHHHHHHHH--H----HHHhhhh-hhhhHHHHhhhh
Confidence            4568899999999999999999999999999999986 999999997444433  3    2334454 368999999998


Q ss_pred             CCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|   ..+|. ++++.++.|.  .+....+++++|+|||||++++.
T Consensus       123 ~~~---~~fD~-i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         123 QFD---EPVDR-IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             GCC---CCCSE-EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccc---ccccc-eeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            776   34676 7888888776  45678899999999999999865

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=4.1e-21  Score=167.00  Aligned_cols=114  Identities=14%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..+++++++++|++|||||||+|++++.+|+.+|+. |+||++|+.+...++  +.    ++..|+. .++++...|+
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~-v~git~s~~q~~~a~--~~----~~~~~l~-~~v~~~~~d~  120 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVN-VIGLTLSENQYAHDK--AM----FDEVDSP-RRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCE-EEEEESCHHHHHHHH--HH----HHHSCCS-SCEEEEECCG
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcc-eeeccchHHHHHHHH--HH----HHhhccc-hhhhhhhhcc
Confidence            35568899999999999999999999999999999997 999999997544433  32    3345553 5789988886


Q ss_pred             CCCcccccccceEEEEEeccccCcC---------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFGPT---------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~~~---------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .   +.++.||. |++++++.|.++         ....++++.++|||||++++.
T Consensus       121 ~---~~~~~fD~-i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         121 E---EFDEPVDR-IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             G---GCCCCCSE-EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             c---ccccccce-EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            4   33456776 788888877765         468899999999999999975

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=1.9e-19  Score=149.22  Aligned_cols=111  Identities=16%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..++.+ .++++.+|||||||+|.++..+|+. +.. |+|+|+|+.|+..|+  +++..    .   ..++.++++|+.
T Consensus        27 ~~~~~~~-~l~~~~~ILDiGcG~G~~~~~la~~-~~~-v~giD~S~~~i~~ak--~~~~~----~---~~~~~~~~~d~~   94 (226)
T d1ve3a1          27 LEPLLMK-YMKKRGKVLDLACGVGGFSFLLEDY-GFE-VVGVDISEDMIRKAR--EYAKS----R---ESNVEFIVGDAR   94 (226)
T ss_dssp             HHHHHHH-SCCSCCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHHH----T---TCCCEEEECCTT
T ss_pred             HHHHHHH-hcCCCCEEEEECCCcchhhhhHhhh-hcc-cccccccccchhhhh--hhhcc----c---cccccccccccc
Confidence            3445544 3578889999999999999999874 555 999999998665554  33321    2   246889999999


Q ss_pred             CCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|++++++  |+|++... .|.+  ++.+.++++.++|||||++++.
T Consensus        95 ~l~~~~~~f--D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1          95 KLSFEDKTF--DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             SCCSCTTCE--EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCcCc--eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            999887765  55555544 5544  6778899999999999999876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=9.2e-19  Score=147.86  Aligned_cols=112  Identities=15%  Similarity=0.234  Sum_probs=85.7

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++......++.+|||||||+|..+..+++. |.. |+|||+|+.|+..|+  +++.+    .   ..+++++++|+
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~-v~gvD~s~~mi~~a~--~~~~~----~---~~~i~~~~~d~   97 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYE-VVGLDLHEEMLRVAR--RKAKE----R---NLKIEFLQGDV   97 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHHH----T---TCCCEEEESCG
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceE-EEEEeeccccccccc--ccccc----c---cccchheehhh
Confidence            3456777888888899999999999999998874 665 999999998666554  33332    2   23799999999


Q ss_pred             CCCcccccccceEEEEE-ecc-ccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFV-NNF-AFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~-~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++++   .+|+|++ .+. .|.  ++....|++++++|||||++++.
T Consensus        98 ~~l~~~~---~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1          98 LEIAFKN---EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             GGCCCCS---CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccccc---ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999764   3456655 333 343  45678899999999999999874

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1e-18  Score=146.58  Aligned_cols=107  Identities=17%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++... +.++.+|||||||+|.++..+++ .|.. |+|||+|+.|+..|+  +        .+    ...++++|+
T Consensus        31 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~-v~giD~s~~~l~~a~--~--------~~----~~~~~~~~~   93 (246)
T d2avna1          31 LIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQE-RGFE-VVLVDPSKEMLEVAR--E--------KG----VKNVVEAKA   93 (246)
T ss_dssp             HHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHT-TTCE-EEEEESCHHHHHHHH--H--------HT----CSCEEECCT
T ss_pred             HHHHHHHHh-cCCCCEEEEECCCCchhcccccc-cceE-EEEeecccccccccc--c--------cc----ccccccccc
Confidence            334444443 45778999999999999999886 4665 999999997555543  1        11    223788999


Q ss_pred             CCCcccccccceEEEEE-ecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFV-NNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~-~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|++++.|  |+|++ ..+ .|.+++...++++.|+|||||.++++
T Consensus        94 ~~l~~~~~~f--D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1          94 EDLPFPSGAF--EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             TSCCSCTTCE--EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccc--cceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            9999877654  56664 444 57899999999999999999999986

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=4.1e-18  Score=142.21  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      +..++... ++++.+|||||||+|..+..+++..  +..+|+|||+|+.|+..|+  +++.    ..+. ..++++.++|
T Consensus        29 i~~~~~~~-~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~--~~~~----~~~~-~~~~~~~~~d  100 (225)
T d1im8a_          29 IGMLAERF-VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR--QHIA----AYHS-EIPVEILCND  100 (225)
T ss_dssp             HHHHHHHH-CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHH--HHHH----TSCC-SSCEEEECSC
T ss_pred             HHHHHHHh-cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHH--HHhH----hhcc-cchhhhccch
Confidence            33444433 5788999999999999999998753  3346999999998555554  3222    2232 3579999999


Q ss_pred             CCCCcccccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        122 FLTEEHREKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      +.++|+.    ++|++++..+ +|.  +++...+++++|+|||||.+++.+...+
T Consensus       101 ~~~~~~~----~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         101 IRHVEIK----NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             TTTCCCC----SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             hhccccc----cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence            9887753    3455665544 333  5788999999999999999998755543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.74  E-value=5.7e-18  Score=140.25  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=85.5

Q ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227         50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      .++++||++|||||||+|..+..+|...+..+|+|||+|+.|+..++  +++++        .+++.++.+|+.+.+...
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~--~~a~~--------~~ni~~i~~d~~~~~~~~  120 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL--ELVRE--------RNNIIPLLFDASKPWKYS  120 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH--HHHHH--------CSSEEEECSCTTCGGGTT
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH--HHhhc--------cCCceEEEeeccCccccc
Confidence            47899999999999999999999999887667999999998554433  33332        358999999999877655


Q ss_pred             ccc-ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KIT-QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~-d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+ .+|+++. .+.|..+....+++++++|||||.+++.
T Consensus       121 ~~~~~vd~v~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         121 GIVEKVDLIYQ-DIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             TTCCCEEEEEE-CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEEEEe-cccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            443 4555544 4556777888899999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=7.6e-18  Score=136.84  Aligned_cols=122  Identities=21%  Similarity=0.299  Sum_probs=94.9

Q ss_pred             CCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227         34 FVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG  113 (268)
Q Consensus        34 ~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~  113 (268)
                      ..+|++..+.-..++.++++++|++|||||||+|.+++.+|+. + .+|+|+|+|+.++..++  ++++    ..|.. .
T Consensus        12 ~~~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~-~~V~avD~~~~~l~~a~--~n~~----~~gl~-~   82 (186)
T d1l3ia_          12 SVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-V-RRVYAIDRNPEAISTTE--MNLQ----RHGLG-D   82 (186)
T ss_dssp             TSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-S-SEEEEEESCHHHHHHHH--HHHH----HTTCC-T
T ss_pred             CCCCCChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-c-eEEEEecCCHHHHHHHH--HHHH----HcCCC-c
Confidence            4667777777788999999999999999999999999998764 3 35999999998555544  4443    34543 5


Q ss_pred             cEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       114 ~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++++|+.+.++...  .+|+|+++...  ......+.++.+.|||||++++.
T Consensus        83 ~v~~~~gda~~~~~~~~--~~D~v~~~~~~--~~~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_          83 NVTLMEGDAPEALCKIP--DIDIAVVGGSG--GELQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             TEEEEESCHHHHHTTSC--CEEEEEESCCT--TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEECchhhcccccC--CcCEEEEeCcc--ccchHHHHHHHHHhCcCCEEEEE
Confidence            89999999988765443  56778876442  34577889999999999999875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=6.2e-19  Score=145.17  Aligned_cols=93  Identities=22%  Similarity=0.328  Sum_probs=73.9

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .++.+|||||||+|.++..++     . ++|||+|+.++..++      +         .+++++++|++++|++++.+|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~-~~giD~s~~~~~~a~------~---------~~~~~~~~d~~~l~~~~~~fD   93 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----I-KIGVEPSERMAEIAR------K---------RGVFVLKGTAENLPLKDESFD   93 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----C-CEEEESCHHHHHHHH------H---------TTCEEEECBTTBCCSCTTCEE
T ss_pred             CCCCeEEEECCCCcccccccc-----e-EEEEeCChhhccccc------c---------ccccccccccccccccccccc
Confidence            456789999999999887652     2 699999997544433      1         268999999999998776554


Q ss_pred             eEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        134 ASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       134 ~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                        +|++. .+.|.+++...+++++++|||||.+++..
T Consensus        94 --~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          94 --FALMVTTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             --EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ccccccccccccccccchhhhhhcCCCCceEEEEe
Confidence              55554 55788999999999999999999999863

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.72  E-value=7e-18  Score=136.58  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=85.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc----------cc
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK----------RH  112 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~----------~~  112 (268)
                      .+...+..+.+.||.+|||||||+|..+..+|++ |.. |+|||+|+.|+..++  ++++    ..+.          ..
T Consensus         8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~-V~gvD~S~~~i~~a~--~~~~----~~~~~~~~~~~~~~~~   79 (201)
T d1pjza_           8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYH-VVGAELSEAAVERYF--TERG----EQPHITSQGDFKVYAA   79 (201)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCE-EEEEEECHHHHHHHH--HHHC----SCSEEEEETTEEEEEC
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCc-eEeecccHHHHHHHH--HHhc----cccchhhhhhhhhccc
Confidence            3667788899999999999999999999999975 876 999999998555543  3221    1111          12


Q ss_pred             ccEEEEEcCCCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        113 GEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       113 ~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..++|+++|+.+++..+. ..+|+|++... +|.+  +....+++++++|||||++++.
T Consensus        80 ~~~~~~~~d~~~l~~~~~-~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          80 PGIEIWCGDFFALTARDI-GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             SSSEEEEECCSSSTHHHH-HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccceecccccccccccc-cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            356899999999875332 24567766544 4443  3567899999999999998764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-18  Score=143.13  Aligned_cols=112  Identities=13%  Similarity=0.049  Sum_probs=82.4

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      +..++.+|||||||+|..+..++...+. +|+|||+|+.|+..|+  +++.    ..+  ..+++|+++|+++++++++.
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak--~~~~----~~~--~~~~~f~~~d~~~~~~~~~~  127 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAK--TYLG----EEG--KRVRNYFCCGLQDFTPEPDS  127 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHH--HHTG----GGG--GGEEEEEECCGGGCCCCSSC
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccc--cccc----ccc--cccccccccccccccccccc
Confidence            4567889999999999999987765554 4999999998555544  3222    222  34789999999999876654


Q ss_pred             cceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227        132 TQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSFCPL  174 (268)
Q Consensus       132 ~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~  174 (268)
                        +|+|++..+ +|.++  ....++++.++|||||.+++.++..+.
T Consensus       128 --fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~  171 (222)
T d2ex4a1         128 --YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE  171 (222)
T ss_dssp             --EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred             --ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccc
Confidence              455665544 56654  457899999999999999988655443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=1.1e-17  Score=142.72  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=101.1

Q ss_pred             CCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc
Q psy17227         34 FVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH  112 (268)
Q Consensus        34 ~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~  112 (268)
                      +....+++.....++..++++||++|||+|||+|.++..+|+..+. .+|+++|++++++..|+  +++++.   .+...
T Consensus        75 r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar--~n~~~~---~~~~~  149 (264)
T d1i9ga_          75 RGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR--RNVSGC---YGQPP  149 (264)
T ss_dssp             SCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH--HHHHHH---HTSCC
T ss_pred             CCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHH--Hhhhhh---ccCCC
Confidence            4455678888999999999999999999999999999999998754 47999999998555544  444431   12224


Q ss_pred             ccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        113 GEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       113 ~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      .+++++++|+.+.++++..  +|.|++    +.|++..++.++.++|||||+++++.|
T Consensus       150 ~nv~~~~~d~~~~~~~~~~--fDaV~l----dlp~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         150 DNWRLVVSDLADSELPDGS--VDRAVL----DMLAPWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             TTEEEECSCGGGCCCCTTC--EEEEEE----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ceEEEEecccccccccCCC--cceEEE----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence            6999999999988877654  566765    568889999999999999999998633

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=7.8e-18  Score=141.37  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-  126 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-  126 (268)
                      ++.++++||++|||||||+|..+..+|...+...|+|||+|+.|+..++  +.+.        ..+++.++.+|....+ 
T Consensus        67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~--~~a~--------~~~ni~~i~~d~~~~~~  136 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--DACA--------ERENIIPILGDANKPQE  136 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH--HHTT--------TCTTEEEEECCTTCGGG
T ss_pred             HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH--HHHh--------hhcccceEEEeeccCcc
Confidence            3466799999999999999999999999766667999999997443332  2221        2468899999998865 


Q ss_pred             ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+..+++|+++ +.+.+.++....+.++.+.|||||.+++.
T Consensus       137 ~~~~~~~v~~i~-~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         137 YANIVEKVDVIY-EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             GTTTCCCEEEEE-ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccceeEEee-ccccchHHHHHHHHHHHHhcccCceEEEE
Confidence            334445554443 34556677888899999999999999876

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.71  E-value=2e-17  Score=140.38  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      -.+++++|||||||+|..+..+++. +...|+|||+|+.|+..|+  ++++    ..+. ..++.|.++|+...++..+ 
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~--~r~~----~~~~-~~~v~f~~~D~~~~~~~~~-   91 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDAR--VRAR----NMKR-RFKVFFRAQDSYGRHMDLG-   91 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHH--HHHH----TSCC-SSEEEEEESCTTTSCCCCS-
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHH--HHHH----hcCC-CcceEEEEcchhhhccccc-
Confidence            4678999999999999999988775 5555999999998555543  3222    2222 3489999999987765322 


Q ss_pred             cceEEEEEecc-ccC----cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNF-AFG----PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~-~~~----~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|++... +|.    .+....+.++.++|||||+|+++
T Consensus        92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            24678887654 333    23567889999999999999975

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=3e-17  Score=141.65  Aligned_cols=115  Identities=18%  Similarity=0.273  Sum_probs=87.7

Q ss_pred             HHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      +..+++.+ .+.++.+|||||||+|.++..++...+. .+|+|||+|+.++..|+  +++.    .   ...+++|+++|
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~--~~~~----~---~~~~~~f~~~d   85 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR--ELFR----L---LPYDSEFLEGD   85 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH--HHHH----S---SSSEEEEEESC
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh--cccc----c---ccccccccccc
Confidence            34455544 5677889999999999999998887653 46999999997544433  3332    1   12379999999


Q ss_pred             CCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        122 FLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      +.++++++   .+|+|++..+ .|.+++...+++++++|||||.+++.++
T Consensus        86 ~~~~~~~~---~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          86 ATEIELND---KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             TTTCCCSS---CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccccccC---CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            99988753   3567776655 5788999999999999999999998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.70  E-value=4e-18  Score=143.95  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=80.6

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+..++...+.. +.+|||||||+|.++..+++. |.. |+|||+|+.|+..|+  +++.    ..   ..+++|+++|+
T Consensus        26 ~~~~~~~~~~~~-~~~vLDiGCG~G~~~~~l~~~-g~~-v~GvD~S~~ml~~A~--~~~~----~~---~~~v~~~~~d~   93 (246)
T d1y8ca_          26 FIIEKCVENNLV-FDDYLDLACGTGNLTENLCPK-FKN-TWAVDLSQEMLSEAE--NKFR----SQ---GLKPRLACQDI   93 (246)
T ss_dssp             HHHHHHHTTTCC-TTEEEEETCTTSTTHHHHGGG-SSE-EEEECSCHHHHHHHH--HHHH----HT---TCCCEEECCCG
T ss_pred             HHHHHHHHhCCC-CCeEEEEeCcCCHHHHHHHHh-CCc-cEeeccchhhhhhcc--cccc----cc---Cccceeeccch
Confidence            444555554444 468999999999999998875 554 999999998666554  3332    12   23799999999


Q ss_pred             CCCcccccccceEEEEE--eccccC---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFV--NNFAFG---PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~--~~~~~~---~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+++++.   .+|+|++  +.+.|.   .++...++++++.|||||.|++.
T Consensus        94 ~~~~~~~---~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          94 SNLNINR---KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCCCSC---CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhcccc---cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9887643   4566765  334343   35677899999999999999973

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.5e-17  Score=142.76  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ...++.+|||||||+|.++..+++..+...++|||+|+.|+..|+      +       ...+++|+++|+.++|+++++
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~------~-------~~~~~~~~~~d~~~l~~~~~s  147 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA------K-------RYPQVTFCVASSHRLPFSDTS  147 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH------H-------HCTTSEEEECCTTSCSBCTTC
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhh------c-------ccccccceeeehhhccCCCCC
Confidence            345677999999999999999998776656999999997554433      1       135899999999999998775


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                      +  |+|++....+.      +.|+.|+|||||++++..
T Consensus       148 f--D~v~~~~~~~~------~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         148 M--DAIIRIYAPCK------AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             E--EEEEEESCCCC------HHHHHHHEEEEEEEEEEE
T ss_pred             E--EEEeecCCHHH------HHHHHHHhCCCcEEEEEe
Confidence            5  56665433222      678999999999999863

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=2.3e-17  Score=140.51  Aligned_cols=115  Identities=10%  Similarity=0.064  Sum_probs=88.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.+...++.+|||+|||+|.++..++..... .|+|||+|+.|+..|+  +++.        ...+++|+++|+.+
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~--~~~~--------~~~~~~~~~~d~~~  151 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAK--RELA--------GMPVGKFILASMET  151 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHH--HHTT--------TSSEEEEEESCGGG
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhh--cccc--------ccccceeEEccccc
Confidence            46788888888899999999999999998876655 4999999998555443  2211        23578999999999


Q ss_pred             CcccccccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      ++++++.  +|+|++..+ +|.++  ....++++.++|||||.|++.++..
T Consensus       152 ~~~~~~~--fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         152 ATLPPNT--YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             CCCCSSC--EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cccCCCc--cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9876654  456666544 66655  4577999999999999999875544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.70  E-value=3e-17  Score=139.53  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=86.8

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+++.+..+|||||||+|..++.+++.++..+++++|+++ ++..  +++++.    ..+. ..+++++.+|+.
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~-~~~~--a~~~~~----~~~~-~~rv~~~~~D~~  140 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG-TVDT--ARSYLK----DEGL-SDRVDVVEGDFF  140 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT-HHHH--HHHHHH----HTTC-TTTEEEEECCTT
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHH-HHHH--HHHHHH----Hhhc-ccchhhccccch
Confidence            3567888899999999999999999999999998877799999854 3333  333332    3443 358999999997


Q ss_pred             CCcccccccceEEEEEeccc-cCcCH--HHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        124 TEEHREKITQASIVFVNNFA-FGPTV--DHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~-~~~~~--~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                      +.. +   ..+|+|++..++ |+++.  ...|++++++|||||++++.+..
T Consensus       141 ~~~-~---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         141 EPL-P---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             SCC-S---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhc-c---cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            632 1   246788877664 45443  46799999999999999987544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=1.6e-16  Score=131.82  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +.+..+.++++.+++++|++|||||||+|..+..+|+..+. ..|+++|+++.+...|+  ++++    ..+  ..++.+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~--~~~~----~~~--~~n~~~  130 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK--RNVE----RLG--IENVIF  130 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHH----HTT--CCSEEE
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhh--hhHh----hhc--cccccc
Confidence            33667889999999999999999999999999999988764 46999999997544443  4433    223  358999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++|..+.++.++  .+|+|+++...+..     ..+++++|||||++++.
T Consensus       131 ~~~d~~~~~~~~~--~fD~I~~~~~~~~~-----p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         131 VCGDGYYGVPEFS--PYDVIFVTVGVDEV-----PETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EESCGGGCCGGGC--CEEEEEECSBBSCC-----CHHHHHHEEEEEEEEEE
T ss_pred             ccCchHHcccccc--chhhhhhhccHHHh-----HHHHHHhcCCCcEEEEE
Confidence            9999987665444  46778877654321     13567899999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=4.7e-16  Score=127.02  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=79.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ++..+...++.+|||||||+|..++.++++ |.. |+|+|+|+.++..++  ++++    ..+  ..++++.++|+.+++
T Consensus        22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~-v~gvD~s~~~l~~a~--~~~~----~~~--~~~~~~~~~d~~~~~   91 (198)
T d2i6ga1          22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYD-VTAWDKNPASMANLE--RIKA----AEG--LDNLQTDLVDLNTLT   91 (198)
T ss_dssp             HHHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHH----HTT--CTTEEEEECCTTTCC
T ss_pred             HHHHcccCCCCcEEEECCCCCHHHHHHHHH-hhh-hccccCcHHHHHHHH--HHhh----hcc--ccchhhhheeccccc
Confidence            444454444458999999999999999875 665 999999997555443  2222    233  247999999999887


Q ss_pred             ccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        127 HREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++ +  .+|+|++..+ +|.+  +....+++++++|||||++++.
T Consensus        92 ~~-~--~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1          92 FD-G--EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             CC-C--CEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-c--cccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            63 3  3567776655 4443  3567899999999999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=2.5e-16  Score=131.66  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         49 DQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      +.++++||++|||+|||+|..+.++|+..|. .+|+|+|+|+.+++.++  ++++        ..+++..+.+|......
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~--~~a~--------~~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV--PIVE--------ERRNIVPILGDATKPEE  136 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHS--------SCTTEEEEECCTTCGGG
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH--HHHH--------hcCCceEEEEECCCccc
Confidence            5568999999999999999999999998864 47999999997444432  3222        24588899999987542


Q ss_pred             -cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        128 -REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       128 -~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .....++|++++. +.+.++....+.++.+.|||||++++.
T Consensus       137 ~~~~~~~vD~i~~d-~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         137 YRALVPKVDVIFED-VAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             GTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccceEEEEEE-ccccchHHHHHHHHHHhcccCCeEEEE
Confidence             2233467777764 445567788899999999999999875

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=5.2e-16  Score=126.60  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ..+.+++.+.+.++++|||||||+|.+++.+|+. +. +|+|+|+|+.++..++  ++++    ..+....+++++.+|+
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~-~v~~iD~s~~~i~~a~--~n~~----~~~l~~~~i~~~~~d~  111 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VK-STTMADINRRAIKLAK--ENIK----LNNLDNYDIRVVHSDL  111 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SS-EEEEEESCHHHHHHHH--HHHH----HTTCTTSCEEEEECST
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-cc-ccceeeeccccchhHH--HHHH----HhCCccceEEEEEcch
Confidence            3456888899999999999999999999988764 33 4999999997555544  3333    3444455799999999


Q ss_pred             CCCcccccccceEEEEEeccccC-cC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEHREKITQASIVFVNNFAFG-PT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~~~~~~d~dvv~~~~~~~~-~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ ++++.  .+|+|+++..+|. .+ ....+.++.+.|||||.+++.
T Consensus       112 ~~-~~~~~--~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         112 YE-NVKDR--KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TT-TCTTS--CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hh-hhccC--CceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            87 43343  4678888876554 44 355688899999999998763

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.6e-16  Score=135.06  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=93.9

Q ss_pred             cccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHh-----c
Q psy17227         36 YGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWY-----G  109 (268)
Q Consensus        36 ~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-----~  109 (268)
                      ...+++..+..++.+++++||++|||+|||+|.++..+|+..+. .+|+++|+++.+...|+  +++++.....     .
T Consensus        79 tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~--~n~~~~~~~~~~~~~~  156 (324)
T d2b25a1          79 TAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK--KNYKHWRDSWKLSHVE  156 (324)
T ss_dssp             SCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHH--HHHHHHHHHHTTTCSS
T ss_pred             CcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHH--HHHHHhhhhhhhhhhh
Confidence            34466778888999999999999999999999999999998754 47999999998655554  5554322111     1


Q ss_pred             cccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        110 KRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       110 ~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....++.+.++|+.+..+......+|.|+.    ..|++..++.++.++|||||++++.
T Consensus       157 ~~~~nv~~~~~di~~~~~~~~~~~fD~V~L----D~p~P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         157 EWPDNVDFIHKDISGATEDIKSLTFDAVAL----DMLNPHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             CCCCCEEEEESCTTCCC-------EEEEEE----CSSSTTTTHHHHGGGEEEEEEEEEE
T ss_pred             ccccceeEEecchhhcccccCCCCcceEee----cCcCHHHHHHHHHHhccCCCEEEEE
Confidence            113589999999987654322235677775    3467778999999999999999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.64  E-value=1.4e-16  Score=132.88  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=77.1

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .++.+|||||||+|.++..++.. +.. |+|||+|+.++..++  ++          ...++.++++|+.+++++ +  .
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~-g~~-v~giD~s~~~i~~a~--~~----------~~~~~~~~~~~~~~~~~~-~--~   81 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH-FND-ITCVEASEEAISHAQ--GR----------LKDGITYIHSRFEDAQLP-R--R   81 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-CSC-EEEEESCHHHHHHHH--HH----------SCSCEEEEESCGGGCCCS-S--C
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc-CCe-EEEEeCcHHHhhhhh--cc----------cccccccccccccccccc-c--c
Confidence            45668999999999999988764 555 999999997555543  11          124799999999988764 3  3


Q ss_pred             eEEEEEecc-ccCcCHHHHHHHHH-hcCCCCcEEEEe
Q psy17227        134 ASIVFVNNF-AFGPTVDHALKERF-QDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~-~~~~~~~~~l~e~~-r~LkpGG~~i~~  168 (268)
                      +|+|++..+ .|.+++...+.+++ ++|||||.++++
T Consensus        82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            566766555 68899999999998 899999999986

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.63  E-value=3.6e-16  Score=132.41  Aligned_cols=116  Identities=16%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      +.++....++.+++++||++|||+|||+|.++..+|+..+ ..+|+++|++++++..|+  ++++    ..+. ..++++
T Consensus        69 iypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~--~n~~----~~~~-~~nv~~  141 (250)
T d1yb2a1          69 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM--DNLS----EFYD-IGNVRT  141 (250)
T ss_dssp             ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH--HHHH----TTSC-CTTEEE
T ss_pred             cCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHH--HHHH----HhcC-CCceEE
Confidence            4445566789999999999999999999999999998764 347999999997544443  4443    2222 358999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+.+.. ++.  .+|+|++    +.+++...+.++.++|||||+++++
T Consensus       142 ~~~Di~~~~-~~~--~fD~V~l----d~p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         142 SRSDIADFI-SDQ--MYDAVIA----DIPDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             ECSCTTTCC-CSC--CEEEEEE----CCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             EEeeeeccc-ccc--eeeeeee----cCCchHHHHHHHHHhcCCCceEEEE
Confidence            999998753 233  4677776    4577888999999999999999986

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6e-16  Score=129.34  Aligned_cols=125  Identities=10%  Similarity=-0.035  Sum_probs=85.0

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH--------HH---H
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW--------MQ---W  107 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~--------~~---~  107 (268)
                      ..+..+..+.+.+++.++.+|||+|||+|..+..+|+ .|+. |+|||+|+.++..++  +.+...        ..   .
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~-~G~~-V~gvD~S~~ai~~a~--~~~~~~~~~~~~~~~~~~~~  104 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD-RGHS-VVGVEISELGIQEFF--TEQNLSYSEEPITEIPGTKV  104 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHH-TTCE-EEEECSCHHHHHHHH--HHTTCCEEEEECTTSTTCEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHh-CCCc-EEEEeCCHHHHHHHH--HHhhccccccchhcccccce
Confidence            3344444555667889999999999999999999987 5886 999999997544333  221100        00   0


Q ss_pred             hccccccEEEEEcCCCCCcccccccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        108 YGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       108 ~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ......+++++++|+.+++.... ..+|+|+...+ +|.  ++....++++.++|||||++++.
T Consensus       105 ~~~~~~~v~~~~~d~~~l~~~~~-~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~  167 (229)
T d2bzga1         105 FKSSSGNISLYCCSIFDLPRTNI-GKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLC  167 (229)
T ss_dssp             EEETTSSEEEEESCGGGGGGSCC-CCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeecCCcEEEEEcchhhcccccc-CceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEE
Confidence            00012479999999998864322 34667776554 332  45677889999999999997764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.4e-15  Score=130.06  Aligned_cols=119  Identities=20%  Similarity=0.218  Sum_probs=93.2

Q ss_pred             cccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc
Q psy17227         36 YGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE  114 (268)
Q Consensus        36 ~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  114 (268)
                      ...+.+.....++.+++++||++|||+|||+|.++..+|+..+ ..+|+|+|+++.++..|+  ++++    ..+. ..+
T Consensus        84 ~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~--~~~~----~~g~-~~~  156 (266)
T d1o54a_          84 TQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE--SNLT----KWGL-IER  156 (266)
T ss_dssp             CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH--HHHH----HTTC-GGG
T ss_pred             ccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HHHH----Hhcc-ccC
Confidence            3456778888999999999999999999999999999998764 346999999998555544  4444    3444 358


Q ss_pred             EEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        115 FRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       115 i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+..+|+... +..  .++|.|+.    +.+++...+.++.++|||||+++++
T Consensus       157 v~~~~~d~~~~-~~~--~~~D~V~~----d~p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         157 VTIKVRDISEG-FDE--KDVDALFL----DVPDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             EEEECCCGGGC-CSC--CSEEEEEE----CCSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             cEEEecccccc-ccc--cceeeeEe----cCCCHHHHHHHHHhhcCCCCEEEEE
Confidence            99999997432 212  34666764    5688999999999999999999986

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=6e-16  Score=131.44  Aligned_cols=100  Identities=22%  Similarity=0.287  Sum_probs=74.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT  132 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~  132 (268)
                      .++|++|||+|||+|.+++.+++ .|++ |+|+|+|+.++..|+  +++++    .+   -+++++++|+.+. +++  .
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~-~g~~-V~gvDis~~av~~A~--~na~~----n~---~~~~~~~~d~~~~-~~~--~  183 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEK-LGGK-ALGVDIDPMVLPQAE--ANAKR----NG---VRPRFLEGSLEAA-LPF--G  183 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH-TTCE-EEEEESCGGGHHHHH--HHHHH----TT---CCCEEEESCHHHH-GGG--C
T ss_pred             cCccCEEEEcccchhHHHHHHHh-cCCE-EEEEECChHHHHHHH--HHHHH----cC---CceeEEecccccc-ccc--c
Confidence            57899999999999999987665 5765 999999998666654  44432    23   2578999998652 223  2


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|+|++|..  ...+...+.++.++|||||+++++
T Consensus       184 ~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         184 PFDLLVANLY--AELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhccc--cccHHHHHHHHHHhcCCCcEEEEE
Confidence            5678888733  233566678889999999999986

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.60  E-value=9.1e-16  Score=130.56  Aligned_cols=117  Identities=19%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ...+++.+++.+..+|||||||+|.++..+++.++..+++++|++ .++..  +++++.    ..+. ..+++++.+|+.
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp-~~~~~--a~~~~~----~~~~-~~ri~~~~~d~~  141 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA-GPAER--ARRRFA----DAGL-ADRVTVAEGDFF  141 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHHH--HHHHHH----HTTC-TTTEEEEECCTT
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh-HHHHH--HHHHHh----hcCC-cceeeeeeeecc
Confidence            346777888888899999999999999999999987779999984 33333  223332    3443 358999999998


Q ss_pred             CCcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      + |.+.   .+|+|++..++| +++  ..+.|++++++|||||++++.+...
T Consensus       142 ~-~~p~---~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~  189 (256)
T d1qzza2         142 K-PLPV---TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD  189 (256)
T ss_dssp             S-CCSC---CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             c-cccc---cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence            6 3322   367888777754 443  3466899999999999999886543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.9e-17  Score=134.62  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+.+.+ ..+|++|||||||+|..+..+++..+. +++|||+|+.++..|+  +++.    .   ...++.++.+|+.+.
T Consensus        45 ~la~~~-~~~g~~VLdIGcG~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~--~~~~----~---~~~~~~~~~~~~~~~  113 (229)
T d1zx0a1          45 ALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR--DWAP----R---QTHKVIPLKGLWEDV  113 (229)
T ss_dssp             HHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHH--HHGG----G---CSSEEEEEESCHHHH
T ss_pred             HHHHhh-ccCCCeEEEeeccchHHHHHHHHcCCC-eEEEeCCCHHHHHHHH--HHhh----h---ccccccccccccccc
Confidence            344444 467899999999999999998875444 5999999997544443  3222    1   234788888887653


Q ss_pred             --cccccccceEEEEEe------ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 --EHREKITQASIVFVN------NFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 --~~~~~~~d~dvv~~~------~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ++++..  +|.|++.      ...|.++....+++++|+|||||+|++.
T Consensus       114 ~~~~~~~~--fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         114 APTLPDGH--FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             GGGSCTTC--EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccc--ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence              333443  4556532      3356778889999999999999999875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=2e-15  Score=124.16  Aligned_cols=104  Identities=18%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~  132 (268)
                      ++..|||||||+|..+..+|+..+...++|||+++.++.  .+.+.++    ..+.  .|+.++++|+.++.  +++++ 
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~--~a~~~~~----~~~l--~Nv~~~~~Da~~l~~~~~~~~-   99 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIV--TAVQKVK----DSEA--QNVKLLNIDADTLTDVFEPGE-   99 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHH--HHHHHHH----HSCC--SSEEEECCCGGGHHHHCCTTS-
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHH--HHHHHHH----HHhc--cCchhcccchhhhhcccCchh-
Confidence            345799999999999999999988888999999987333  3333332    3443  58999999998875  44544 


Q ss_pred             ceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                       +|.|+++....++..         ...+.++.|+|||||.|.+.
T Consensus       100 -~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         100 -VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             -CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             -hhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence             455666544334432         36789999999999998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-15  Score=126.18  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227         40 SFDLISRMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR  116 (268)
Q Consensus        40 ~~~~~~~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~  116 (268)
                      .+..+.++++.|  +++||++|||||||+|..+..+|+..+. .+|+|||+++.++..|+  +++++... ......++.
T Consensus        59 ~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~--~~l~~~~~-~~~~~~~~~  135 (224)
T d1i1na_          59 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSV--NNVRKDDP-TLLSSGRVQ  135 (224)
T ss_dssp             CHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHHHHHCT-HHHHTSSEE
T ss_pred             hhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHH--HhccccCc-ccccccceE
Confidence            355678899988  7899999999999999999988887663 47999999997555543  44432100 001235899


Q ss_pred             EEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++++|..+.++++.  .+|+|+++...+.     ...++++.|||||++++.
T Consensus       136 ~~~gD~~~~~~~~~--~fD~I~~~~~~~~-----ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         136 LVVGDGRMGYAEEA--PYDAIHVGAAAPV-----VPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEESCGGGCCGGGC--CEEEEEECSBBSS-----CCHHHHHTEEEEEEEEEE
T ss_pred             EEEeecccccchhh--hhhhhhhhcchhh-----cCHHHHhhcCCCcEEEEE
Confidence            99999988765544  4677887765432     124578999999999984

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=2.1e-14  Score=117.95  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT  132 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~  132 (268)
                      .+..|||||||+|..+..+|+..+...++|||+++.+  ++.+.+++.    ..+.  .|++++++|+.++.  +++.  
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~--v~~a~~~~~----~~~l--~Ni~~~~~da~~l~~~~~~~--  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSV--LSYALDKVL----EVGV--PNIKLLWVDGSDLTDYFEDG--  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHH--HHHHHHHHH----HHCC--SSEEEEECCSSCGGGTSCTT--
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHH--HHHHHHhhh----hhcc--ccceeeecCHHHHhhhccCC--
Confidence            3457999999999999999999888889999999863  333333333    3343  58999999999876  3333  


Q ss_pred             ceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+|.|+++..-.|+..         ...+..+.++|||||.|.+.
T Consensus       101 ~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         101 EIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             ceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            3456666544334432         45688999999999999763

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.1e-14  Score=127.88  Aligned_cols=109  Identities=20%  Similarity=0.327  Sum_probs=79.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +.....+.+|++|||||||+|.+++.+|+ .|+.+|+|+|.|+ ++..++  +..    +..+. ..+++++++|+.+++
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~--~~~----~~~~~-~~~i~~i~~~~~~l~  100 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSS-IIEMAK--ELV----ELNGF-SDKITLLRGKLEDVH  100 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESST-HHHHHH--HHH----HHTTC-TTTEEEEESCTTTSC
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHH-hCCCEEEEEeCCH-HHHHHH--HHH----HHhCc-cccceEEEeehhhcc
Confidence            33344556899999999999999987665 6877899999997 333332  222    23343 358999999999998


Q ss_pred             ccccccceEEEEEecc----ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227        127 HREKITQASIVFVNNF----AFGPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~----~~~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                      ++++  .+|+|+++..    .+.......+..+.|+|||||+++
T Consensus       101 ~~~~--~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         101 LPFP--KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CSSS--CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             Cccc--ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            7654  4577776543    234557777888889999999996

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.5e-15  Score=128.22  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=75.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc--cccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR--HGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~--~~~i~~~~gD~~  123 (268)
                      .++..++..++.+|||||||+|.++..+|+. |.. |+|+|+|+.|+..|+  ++...    .+..  .....+..+|+.
T Consensus        47 ~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~-v~gvD~S~~ml~~A~--~~~~~----~~~~~~~~~~~~~~~~~~  118 (292)
T d1xvaa_          47 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFS-VTSVDASDKMLKYAL--KERWN----RRKEPAFDKWVIEEANWL  118 (292)
T ss_dssp             HHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCE-EEEEESCHHHHHHHH--HHHHH----TTTSHHHHTCEEEECCGG
T ss_pred             HHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCe-eeeccCchHHHHHHH--HHHHh----cccccccceeeeeecccc
Confidence            3555566667889999999999999999875 665 999999998766655  22221    1111  124556666665


Q ss_pred             CCccccc-ccceEEEEE-e-ccccCc-------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREK-ITQASIVFV-N-NFAFGP-------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~-~~d~dvv~~-~-~~~~~~-------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++.... ...+|+|++ . .+.|.+       +....+++++++|||||+|++.
T Consensus       119 ~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             GHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            4331100 113455554 2 344543       3567899999999999999985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.5e-14  Score=125.11  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .+.+|++|||||||+|.+++.+|+ .|+.+|+|||.|+.+ ..+  ++.++    ..+. ..+++++++|+.+++++.+ 
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~~-~~a--~~~~~----~n~~-~~~v~~~~~~~~~~~~~~~-   99 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSIS-DYA--VKIVK----ANKL-DHVVTIIKGKVEEVELPVE-   99 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTTH-HHH--HHHHH----HTTC-TTTEEEEESCTTTCCCSSS-
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHHH-hhh--hhHHH----HhCC-ccccceEeccHHHcccccc-
Confidence            345789999999999999987766 577779999999853 222  22222    2333 3589999999999987654 


Q ss_pred             cceEEEEEeccc---c-CcCHHHHHHHHHhcCCCCcEEE
Q psy17227        132 TQASIVFVNNFA---F-GPTVDHALKERFQDLKDGARIV  166 (268)
Q Consensus       132 ~d~dvv~~~~~~---~-~~~~~~~l~e~~r~LkpGG~~i  166 (268)
                       .+|+|+++...   + ...+...+..+.|.|||||+++
T Consensus       100 -~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         100 -KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             -CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             -eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence             45777765432   2 2346778888999999999987

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.51  E-value=2.6e-14  Score=118.88  Aligned_cols=110  Identities=21%  Similarity=0.248  Sum_probs=80.6

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      +.+.....+++.+++++|++|||||||+|.++..+|+. .. +|+++|+++.+...|+  +++.        ...++.++
T Consensus        54 ~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~-~V~aiE~~~~~~~~A~--~~~~--------~~~nv~~~  121 (224)
T d1vbfa_          54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VD-KVVSVEINEKMYNYAS--KLLS--------YYNNIKLI  121 (224)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEEESCHHHHHHHH--HHHT--------TCSSEEEE
T ss_pred             ehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hc-ccccccccHHHHHHHH--HHHh--------cccccccc
Confidence            34556678999999999999999999999999988875 43 4999999997444443  2221        24699999


Q ss_pred             EcCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|.........  .+|+|++.+.. +.|      ..+++.|||||++|+-
T Consensus       122 ~~d~~~g~~~~~--pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         122 LGDGTLGYEEEK--PYDRVVVWATAPTLL------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             ESCGGGCCGGGC--CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred             cCchhhcchhhh--hHHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence            999876433222  36778876553 222      3567889999999873

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.9e-15  Score=125.40  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHh----CC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAAT----GC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~----~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .++..+ ..+++.+|||||||+|.++..++...    +.  ..++|||+|+.|+..++  +++.+   .......++.+.
T Consensus        30 ~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~--~~~~~---~~~~~~~~~~~~  104 (280)
T d1jqea_          30 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK--ELVAK---ISNLENVKFAWH  104 (280)
T ss_dssp             HHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHH--HHHTT---CCSCTTEEEEEE
T ss_pred             HHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHH--HHHhh---ccccccccccch
Confidence            344444 34455689999999999988876642    22  24799999987444433  32221   011111134455


Q ss_pred             EcCCCCC------cccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTE------EHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l------~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.++.++      +++++  .+|+|++. .++|.+++...+++++++|||||.++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~--~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         105 KETSSEYQSRMLEKKELQ--KWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CSCHHHHHHHHTTSSSCC--CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhcccCCCC--ceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            5554322      22233  45666665 4467889999999999999999998876

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-13  Score=118.91  Aligned_cols=109  Identities=17%  Similarity=0.295  Sum_probs=76.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      +.....+.++++|||||||+|.+++.+|+ .|..+|+|+|.|+.+...   .+..    ...+. ..+++++++|+.+++
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~-~Ga~~V~aid~s~~~~~a---~~~~----~~~~~-~~~i~~~~~~~~~l~   97 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEILYQA---MDII----RLNKL-EDTITLIKGKIEEVH   97 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHHHHH---HHHH----HHTTC-TTTEEEEESCTTTSC
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHH-cCCCEEEEEeCHHHHHHH---HHHH----HHhCC-CccceEEEeeHHHhc
Confidence            33444667899999999999999997776 577779999999853222   1221    12333 358999999999998


Q ss_pred             ccccccceEEEEEeccc---cCcCH-HHHHHHHHhcCCCCcEEE
Q psy17227        127 HREKITQASIVFVNNFA---FGPTV-DHALKERFQDLKDGARIV  166 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~---~~~~~-~~~l~e~~r~LkpGG~~i  166 (268)
                      +++.  .+|+|+++...   +.... ...+..+.+.|||||+++
T Consensus        98 ~~~~--~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 LPVE--KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCS--CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             Cccc--cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            7654  56788776442   23333 344555678999999997

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.48  E-value=8.8e-14  Score=114.95  Aligned_cols=113  Identities=15%  Similarity=0.245  Sum_probs=84.1

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      +.+..+.++++.+++++|++|||||||+|..+..+|+..+.. |++||.++.+...++  ++++    ..+  ..|+.++
T Consensus        62 s~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~-V~~ie~~~~l~~~a~--~~l~----~~g--~~nv~~~  132 (215)
T d1jg1a_          62 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTD-VYTIERIPELVEFAK--RNLE----RAG--VKNVHVI  132 (215)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSC-EEEEESCHHHHHHHH--HHHH----HTT--CCSEEEE
T ss_pred             hhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCce-eEEEeccHHHHHHHH--HHHH----HcC--CceeEEE
Confidence            345567899999999999999999999999999988877755 999999987444433  4433    233  4699999


Q ss_pred             EcCCCCCcccccccceEEEEEecccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|..+......  .+|+|++..... .|      ..+.+.|||||++++-
T Consensus       133 ~gd~~~g~~~~~--pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         133 LGDGSKGFPPKA--PYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             ESCGGGCCGGGC--CEEEEEECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred             ECccccCCcccC--cceeEEeecccccCC------HHHHHhcCCCCEEEEE
Confidence            999987443332  467787765543 22      2356789999999973

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=5.7e-13  Score=110.68  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             cHHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCC------cEEEEEeCCCChhHHHHHHHHHHHHH-HHhcc
Q psy17227         40 SFDLISRMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATGC------KICWGVEKADLPAKYAEMHTVFKRWM-QWYGK  110 (268)
Q Consensus        40 ~~~~~~~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~------~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~~  110 (268)
                      .+....++++.|  +++++++|||||||+|..+..+|+..+.      .+|++||+++.+...|+  +++.... ...  
T Consensus        63 ~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~--~~l~~~~~~~~--  138 (223)
T d1r18a_          63 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK--ANLNTDDRSML--  138 (223)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH--HHHHHHHHHHH--
T ss_pred             hhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH--Hhhhhcchhhc--
Confidence            345678899988  7999999999999999999888876532      25999999997555554  3322210 111  


Q ss_pred             ccccEEEEEcCCCCCcccccccceEEEEEecccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        111 RHGEFRLVKGDFLTEEHREKITQASIVFVNNFAF-GPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       111 ~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~-~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...++.++++|..+...+..  .+|+|++...+. .|      ..+.+.|||||++++.
T Consensus       139 ~~~nv~~~~~d~~~~~~~~~--~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         139 DSGQLLIVEGDGRKGYPPNA--PYNAIHVGAAAPDTP------TELINQLASGGRLIVP  189 (223)
T ss_dssp             HHTSEEEEESCGGGCCGGGC--SEEEEEECSCBSSCC------HHHHHTEEEEEEEEEE
T ss_pred             CccEEEEEeccccccccccc--ceeeEEEEeechhch------HHHHHhcCCCcEEEEE
Confidence            23589999999987554333  467788766543 22      2467899999999873

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4e-14  Score=119.25  Aligned_cols=115  Identities=18%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH------------HHH-hcc--------
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW------------MQW-YGK--------  110 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~------------~~~-~~~--------  110 (268)
                      +..+|.+|||||||+|..+..++.. +...|+|+|+|+.++..++  +++++.            +.. .+.        
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELE--KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE  124 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHH--HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHH--HHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence            3467889999999999988766654 4556999999998666554  332210            000 000        


Q ss_pred             --ccccE-EEEEcCC----CCCcccccccceEEEEEecc-ccC----cCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227        111 --RHGEF-RLVKGDF----LTEEHREKITQASIVFVNNF-AFG----PTVDHALKERFQDLKDGARIVSSKSF  171 (268)
Q Consensus       111 --~~~~i-~~~~gD~----~~l~~~~~~~d~dvv~~~~~-~~~----~~~~~~l~e~~r~LkpGG~~i~~~~~  171 (268)
                        ....+ .....+.    ...+++++  .+|+|++... .|.    .++...+++++++|||||.+++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         125 EKLRAAVKRVLKCDVHLGNPLAPAVLP--LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCC--CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHHhhhhhcccccccccccccccccCC--cccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence              00011 1222222    22233343  3567766544 333    25677899999999999999987443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5e-12  Score=107.85  Aligned_cols=118  Identities=14%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      -++..+...+.... ..+.+|||+|||+|.+++.+|...+..+|+|+|+|+.++.+|+  +++++    .+.  .+++|+
T Consensus        93 eTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~--~Na~~----~~~--~~v~~~  163 (274)
T d2b3ta1          93 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ--RNAQH----LAI--KNIHIL  163 (274)
T ss_dssp             THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH--HHHHH----HTC--CSEEEE
T ss_pred             chhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH--HHHHH----hCc--ccceee
Confidence            33344555666544 4557899999999999999999888878999999998666655  44443    343  479999


Q ss_pred             EcCCCCCcccccccceEEEEEeccccCcC--------------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        119 KGDFLTEEHREKITQASIVFVNNFAFGPT--------------------------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~~~--------------------------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++|+.+ ++++  ..+|+|++|..+....                          ..+.+.+..+.|+|||.+++-
T Consensus       164 ~~d~~~-~~~~--~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         164 QSDWFS-ALAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             CCSTTG-GGTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eccccc-ccCC--CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            999976 2222  2578999986643211                          122445666899999999984

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=3.3e-12  Score=108.41  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=79.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      .++.+.  +++|.+|||+|||+|.+++.+|+. |..+|+++|+||.++..++  ++++    ..+.. ++++++++|+.+
T Consensus        99 ~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~--~N~~----~n~l~-~~v~~~~~D~~~  168 (260)
T d2frna1          99 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLV--ENIH----LNKVE-DRMSAYNMDNRD  168 (260)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHH--HHHH----HTTCT-TTEEEECSCTTT
T ss_pred             HHHHhh--cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHH--HHHH----HhCCC-ceEEEEEcchHH
Confidence            345555  578999999999999999998875 5445999999998555544  4443    34443 579999999998


Q ss_pred             CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++..   ..+|.|+++..   +.....+.+..+.|||||.+.++
T Consensus       169 ~~~~---~~~D~Ii~~~p---~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         169 FPGE---NIADRILMGYV---VRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CCCC---SCEEEEEECCC---SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             hccC---CCCCEEEECCC---CchHHHHHHHHhhcCCCCEEEEE
Confidence            7642   24677887644   33445677788999999998765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.33  E-value=1.3e-12  Score=102.02  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=78.7

Q ss_pred             HHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ++..++. -.|.+|||+|||+|.+++.++. .|+.+|++||+++.++..++  ++++    ..+. ..+++++++|+.++
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~-rga~~v~~ve~~~~a~~~~~--~n~~----~~~~-~~~~~ii~~D~~~~   76 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQ--DNII----MTKA-ENRFTLLKMEAERA   76 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHH--HHHH----TTTC-GGGEEEECSCHHHH
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHH-hCcceeeeehhchhhhhhhh--hhhh----hccc-ccchhhhccccccc
Confidence            4455543 3688999999999999998665 57778999999997555543  3333    2343 35799999998774


Q ss_pred             cccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      .. .....+|+|+++..+........+..+.  +.|+|||.+++.
T Consensus        77 l~-~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          77 ID-CLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             HH-HBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cc-ccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            21 1224578999976544334455565554  579999999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=4.5e-12  Score=110.89  Aligned_cols=108  Identities=20%  Similarity=0.254  Sum_probs=78.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~  130 (268)
                      +++|.+|||+|||+|.+++.+|. .|+.+|+++|+|+.++..++  ++++    .+|.. .+++++++|+.+.-  +...
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~-~ga~~V~~vD~s~~al~~a~--~N~~----~ngl~-~~~~~~~~d~~~~~~~~~~~  214 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAI-AGADEVIGIDKSPRAIETAK--ENAK----LNGVE-DRMKFIVGSAFEEMEKLQKK  214 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHHH----HTTCG-GGEEEEESCHHHHHHHHHHT
T ss_pred             cCCCCeeecccCcccchhhhhhh-cCCcEEEeecCCHHHHHHHH--HHHH----HcCCC-ccceeeechhhhhhHHHHhc
Confidence            57899999999999999998776 46667999999997555443  4443    34553 58999999987632  1122


Q ss_pred             ccceEEEEEeccccCcC----------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPT----------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~----------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|+++...+...          ....+....++|||||+++.+
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~  262 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC  262 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            23578999887655432          233456667899999999975

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.28  E-value=1.2e-12  Score=110.15  Aligned_cols=109  Identities=13%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+++.++ .....+|||||||+|.+++.++++++..+++..|+.+.   ++.           .+ ...+++++.+|+.
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v---i~~-----------~~-~~~ri~~~~gd~~  134 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV---IEN-----------AP-PLSGIEHVGGDMF  134 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH---HTT-----------CC-CCTTEEEEECCTT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh---hhc-----------cC-CCCCeEEecCCcc
Confidence            45777777 56678999999999999999999999888999998641   111           11 2468999999997


Q ss_pred             CCcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      +. .+    .+|++++..++| +++  ....|+++++.|+|||++++.+.+.|
T Consensus       135 ~~-~p----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~  182 (244)
T d1fp1d2         135 AS-VP----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  182 (244)
T ss_dssp             TC-CC----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cc-cc----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence            62 22    347777777754 433  44568999999999999999865544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=7.2e-12  Score=101.53  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +.++++.+.+.++.++||++||+|+.+..+++.++..+|+|+|.++.|+..++  ++++    ..   ..++.++++++.
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~--~~l~----~~---~~r~~~~~~~f~   82 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE--EKLK----EF---SDRVSLFKVSYR   82 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH--HHTG----GG---TTTEEEEECCGG
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHH--Hhhc----cc---cccccchhHHHh
Confidence            46788889999999999999999999999999876667999999998555543  3222    11   248999999998


Q ss_pred             CCccc---ccccceEEEEEeccc----------cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHR---EKITQASIVFVNNFA----------FGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~---~~~~d~dvv~~~~~~----------~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++...   .+...+|.|+...-+          -.......+..++++|+|||++++.
T Consensus        83 ~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii  140 (192)
T d1m6ya2          83 EADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI  140 (192)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred             hHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence            86521   112356777765221          0122445677788999999999875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.1e-12  Score=108.65  Aligned_cols=115  Identities=13%  Similarity=0.018  Sum_probs=71.2

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH------------H-HHHhc---------
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR------------W-MQWYG---------  109 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~------------~-~~~~~---------  109 (268)
                      +...|.+|||||||+|..+...+..... +|+|+|+|+.|+..++  +++++            . +...+         
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  127 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELG--RWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE  127 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHH--HHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHH--HHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence            5567899999999999887655555444 5999999998666554  22210            0 00000         


Q ss_pred             --cccccEEEEEcCCCCCc-cc---ccccceEEEEEecccc-C----cCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227        110 --KRHGEFRLVKGDFLTEE-HR---EKITQASIVFVNNFAF-G----PTVDHALKERFQDLKDGARIVSSK  169 (268)
Q Consensus       110 --~~~~~i~~~~gD~~~l~-~~---~~~~d~dvv~~~~~~~-~----~~~~~~l~e~~r~LkpGG~~i~~~  169 (268)
                        ...........|+.+-. +.   .....+|+|++..+++ .    .++..++++++++|||||.+++..
T Consensus       128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence              00112345566776422 11   1112467887765532 2    246788999999999999999863

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.21  E-value=2.6e-11  Score=105.58  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~~~  130 (268)
                      +.+|.+|||++||+|++++.+|. .|+..|++||+|+.++..++  ++++    .++....+++|+++|+.+. + +...
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~--~N~~----~n~l~~~~~~~i~~d~~~~l~~~~~~  214 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSL--AHFE----ANHLDMANHQLVVMDVFDYFKYARRH  214 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHH--HHHH----HTTCCCTTEEEEESCHHHHHHHHHHT
T ss_pred             hhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHH--HHHH----HhcccCcceEEEEccHHHHHHHHHhh
Confidence            56899999999999999987655 67777999999998666654  4433    2444446899999999763 2 1122


Q ss_pred             ccceEEEEEeccccCc----------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGP----------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~----------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|+++...+..          +....+....+.|+|||.++++
T Consensus       215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~  262 (317)
T d2b78a2         215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS  262 (317)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            2357899987654432          1234456667899999999975

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.20  E-value=1.5e-11  Score=99.94  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=56.6

Q ss_pred             HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227         48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH  127 (268)
Q Consensus        48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~  127 (268)
                      +...+--.|++|||+|||+|.+++.++. .|+.+|+|+|+++.++..++  ++           ..+++|+++|+.+++ 
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar--~N-----------~~~~~~~~~D~~~l~-  105 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAK--RN-----------CGGVNFMVADVSEIS-  105 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHH--HH-----------CTTSEEEECCGGGCC-
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHHH--Hc-----------cccccEEEEehhhcC-
Confidence            3344445789999999999999986554 67777999999997554443  21           247899999998765 


Q ss_pred             cccccceEEEEEecc
Q psy17227        128 REKITQASIVFVNNF  142 (268)
Q Consensus       128 ~~~~~d~dvv~~~~~  142 (268)
                          ..+|+|++|..
T Consensus       106 ----~~fD~Vi~NPP  116 (197)
T d1ne2a_         106 ----GKYDTWIMNPP  116 (197)
T ss_dssp             ----CCEEEEEECCC
T ss_pred             ----CcceEEEeCcc
Confidence                24788998855

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=5.7e-12  Score=109.95  Aligned_cols=106  Identities=17%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK  130 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~  130 (268)
                      ..+|++|||++||+|++++.+|.  +..+|+++|+|+.++..+  +++++    ..|.  .+++++++|+.++.  +...
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a--~~n~~----~ngl--~~~~~i~~d~~~~~~~~~~~  212 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRA--EENAR----LNGL--GNVRVLEANAFDLLRRLEKE  212 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHH--HHHHH----HTTC--TTEEEEESCHHHHHHHHHHT
T ss_pred             HhCCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHH--HHHHH----HcCC--CCcceeeccHHHHhhhhHhh
Confidence            34789999999999999998765  344699999999754444  34443    3454  47999999997742  1122


Q ss_pred             ccceEEEEEeccccCcC---H-------HHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPT---V-------DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~---~-------~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|+++..++...   .       ...+..+.++|||||.++.+
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~  260 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA  260 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            23578999886654322   2       23455667899999999975

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.16  E-value=2e-11  Score=102.42  Aligned_cols=109  Identities=16%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             HHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..++...... ...+|||||||+|..++.++++++..++++.|+.+.   ++.            .....+++++.+|+.
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v---i~~------------~~~~~r~~~~~~d~~  134 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV---IED------------APSYPGVEHVGGDMF  134 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT---TTT------------CCCCTTEEEEECCTT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh---hhh------------cccCCceEEeccccc
Confidence            4466666653 457899999999999999999998888999999763   111            112468999999997


Q ss_pred             CCcccccccceEEEEEeccccC-c--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        124 TEEHREKITQASIVFVNNFAFG-P--TVDHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       124 ~l~~~~~~~d~dvv~~~~~~~~-~--~~~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      + |.+    .+|+++...++|. +  +....|+++++.|+|||++++.+...+
T Consensus       135 ~-~~P----~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~  182 (243)
T d1kyza2         135 V-SIP----KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP  182 (243)
T ss_dssp             T-CCC----CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred             c-cCC----CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence            6 222    2345666556543 3  255668999999999999998866543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=5.3e-11  Score=97.02  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE  126 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~  126 (268)
                      ++...+.-.|.+|||+|||+|.+++.++. .|..+|+|+|+|+.++..++  ++++    ..   ..+.+++++|+.+++
T Consensus        38 ~~~~~~dl~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~--~N~~----~~---~~~~~~~~~d~~~~~  107 (201)
T d1wy7a1          38 LAYSLGDIEGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLI--ENLG----EF---KGKFKVFIGDVSEFN  107 (201)
T ss_dssp             HHHHTTSSTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHTG----GG---TTSEEEEESCGGGCC
T ss_pred             HHHhcCCCCCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHH--HHHH----Hc---CCCceEEECchhhhC
Confidence            34555666789999999999999987665 57667999999997555544  3332    22   247899999987754


Q ss_pred             ccccccceEEEEEeccc
Q psy17227        127 HREKITQASIVFVNNFA  143 (268)
Q Consensus       127 ~~~~~~d~dvv~~~~~~  143 (268)
                           ..+|+|++|..+
T Consensus       108 -----~~fD~Vi~nPP~  119 (201)
T d1wy7a1         108 -----SRVDIVIMNPPF  119 (201)
T ss_dssp             -----CCCSEEEECCCC
T ss_pred             -----CcCcEEEEcCcc
Confidence                 246789888664

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.15  E-value=1.1e-10  Score=93.58  Aligned_cols=124  Identities=19%  Similarity=0.158  Sum_probs=89.1

Q ss_pred             ccCcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         37 GETSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        37 g~~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      -+++...-..+++.++ ..+|.+|||++||+|.+++.++. .|+.+|++||.++.++..++  ++++.    .+. ..++
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~s-rGa~~v~~ve~~~~a~~~~~--~N~~~----~~~-~~~~   93 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIK--ENIAI----TKE-PEKF   93 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH--HHHHH----HTC-GGGE
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeee-cchhHHHHHHHHHHHHHHHH--HHhhh----hhc-cccc
Confidence            3455555556777775 45789999999999999998766 58888999999987555443  44432    333 3489


Q ss_pred             EEEEcCCCCC-c-ccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227        116 RLVKGDFLTE-E-HREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~  168 (268)
                      +++++|+.+. . +......+|+||++..+...+....+..+..  .|+|||.+++-
T Consensus        94 ~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1          94 EVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            9999998763 2 1122235799999877665667777887764  69999998873

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=3.2e-11  Score=95.87  Aligned_cols=121  Identities=17%  Similarity=0.167  Sum_probs=75.2

Q ss_pred             cCcHHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227         38 ETSFDLISRMIDQI--NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF  115 (268)
Q Consensus        38 ~~~~~~~~~ll~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i  115 (268)
                      ++....-+.+.+.+  .+.+|.+|||+|||+|.+++.++. .|+. ++++|.|+.++..++  ++++.    .+.. .++
T Consensus        22 pt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~-~ga~-vv~vD~~~~a~~~~~--~N~~~----~~~~-~~v   92 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAAS-EGWE-AVLVEKDPEAVRLLK--ENVRR----TGLG-ARV   92 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHH-TTCE-EEEECCCHHHHHHHH--HHHHH----HTCC-CEE
T ss_pred             CCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhh-ccch-hhhcccCHHHHhhhh--HHHHh----hccc-cce
Confidence            34444334444443  357788999999999999998665 5775 899999998655544  44442    3432 345


Q ss_pred             EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      ....+|............+|+|+++..+.. +....+.++.  ..|+|||.+++.
T Consensus        93 ~~~~~d~~~~~~~~~~~~fD~If~DPPY~~-~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          93 VALPVEVFLPEAKAQGERFTVAFMAPPYAM-DLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEEECCCTTS-CTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             eeeehhcccccccccCCccceeEEcccccc-CHHHHHHHHHHcCCcCCCeEEEEE
Confidence            554444321111112235789999866433 4444555554  479999998874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=2.4e-11  Score=100.11  Aligned_cols=115  Identities=14%  Similarity=0.225  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      +..++...   +..+|||||||+|..++.+|+..+ ..+++++|+++.+...++  +++    ...|.. .+++++.||+
T Consensus        48 L~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~--~~~----~~~gl~-~~i~l~~Gd~  117 (214)
T d2cl5a1          48 MDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ--QML----NFAGLQ-DKVTILNGAS  117 (214)
T ss_dssp             HHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH--HHH----HHHTCG-GGEEEEESCH
T ss_pred             HHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH--HHH----HHcCCC-ccceeeeccc
Confidence            34444443   446899999999999999998654 346999999997444433  333    334553 5899999999


Q ss_pred             CCC-c-ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTE-E-HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l-~-~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+. | +..  ....+|+||+.+..........+.+..+.|||||.+++-
T Consensus       118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             HHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             cccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence            763 3 111  123578899874321111233467788999999998874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.4e-11  Score=95.10  Aligned_cols=120  Identities=17%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             CcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227         39 TSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL  117 (268)
Q Consensus        39 ~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~  117 (268)
                      ++...-..++..+. .-.+.+|||++||+|.+++.++. .|+.+|+.||.++.++.+.+  ++++.    .+  ..++++
T Consensus        26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~gieals-rGa~~v~~VE~~~~a~~~~k--~N~~~----~~--~~~~~i   96 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALS-RYAAGATLIEMDRAVSQQLI--KNLAT----LK--AGNARV   96 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHH--HHHHH----TT--CCSEEE
T ss_pred             CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEe-cCcceeEEEEEeechhhHHH--HHHhh----cc--ccceee
Confidence            43333344555443 23678999999999999998665 58878999999987555443  44432    23  357999


Q ss_pred             EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      +++|+.+..- .....+|+||++..+........+..+.  ..|+|+|.+++-
T Consensus        97 i~~d~~~~l~-~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1          97 VNSNAMSFLA-QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             ECSCHHHHHS-SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             eeeccccccc-ccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            9999876431 1224679999987765555666676665  469999999873

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.97  E-value=7.8e-10  Score=95.37  Aligned_cols=109  Identities=17%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HRE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~  129 (268)
                      +..++.+|||++||+|.+++.+|. .|+. |++||.|+.++..|+  ++++    ..+....+++|+++|+.+.-  ...
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~-~GA~-V~~VD~s~~al~~a~--~N~~----ln~~~~~~~~~i~~D~~~~l~~~~~  200 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAA-AGAE-VTHVDASKKAIGWAK--ENQV----LAGLEQAPIRWICEDAMKFIQREER  200 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHH-TTCE-EEEECSCHHHHHHHH--HHHH----HHTCTTSCEEEECSCHHHHHHHHHH
T ss_pred             hccCCCeEEEecCCCcHHHHHHHh-CCCe-EEEEeChHHHHHHHH--Hhhh----hhcccCCcEEEEeCCHHHhHHHHhh
Confidence            356788999999999999998765 5774 999999997555544  4443    24554457999999997642  111


Q ss_pred             cccceEEEEEeccccCc-----------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGP-----------TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~-----------~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+|+++...+..           +....+..+.++|+|||.+++.
T Consensus       201 ~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         201 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             cCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            11346788887543321           1122234556789999875543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.97  E-value=6.1e-10  Score=93.28  Aligned_cols=100  Identities=14%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+|||||||+|..++.++++++..+++..|+.+.   ++           ..+ ...+++++.+|+.+.+     ..
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v---i~-----------~~~-~~~rv~~~~gD~f~~~-----p~  138 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV---VE-----------NLS-GSNNLTYVGGDMFTSI-----PN  138 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH---HT-----------TCC-CBTTEEEEECCTTTCC-----CC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH---HH-----------hCc-ccCceEEEecCcccCC-----CC
Confidence            3456899999999999999999998888999999641   11           122 2468999999998732     13


Q ss_pred             eEEEEEecccc-CcCH--HHHHHHHHhcCCCC---cEEEEeCCCCC
Q psy17227        134 ASIVFVNNFAF-GPTV--DHALKERFQDLKDG---ARIVSSKSFCP  173 (268)
Q Consensus       134 ~dvv~~~~~~~-~~~~--~~~l~e~~r~LkpG---G~~i~~~~~~~  173 (268)
                      +|++++..++| +++.  .+.|+++++.|+||   |++++.+...+
T Consensus       139 aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~  184 (244)
T d1fp2a2         139 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  184 (244)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             CcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence            57787777755 4432  45689999999998   77887755443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-09  Score=87.82  Aligned_cols=107  Identities=14%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-c-c
Q psy17227         53 ATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-H-R  128 (268)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~-~  128 (268)
                      ....++||+||||+|.-++.+|...+ ..+++.+|+++.....|+  ++++    ..|.. .+++++.||+.+ ++ + .
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~--~~~~----~ag~~-~~i~~~~Gda~e~l~~~~~  129 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR--PLWR----QAEAE-HKIDLRLKPALETLDELLA  129 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH--HHHH----HTTCT-TTEEEEESCHHHHHHHHHH
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH--HHHH----hcCcc-ceEEEEEeehhhcchhhhh
Confidence            34567899999999999999998654 346999999997544443  4443    35553 589999999866 22 1 1


Q ss_pred             -ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        129 -EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       129 -~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ....++|+||+.+-  .......+..+.+.|+|||.+++-
T Consensus       130 ~~~~~~fD~ifiD~d--k~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         130 AGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcccCCccEEEEeCC--HHHHHHHHHHHHHHhcCCcEEEEe
Confidence             11246889998743  244566788889999999999995

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=6.1e-09  Score=88.19  Aligned_cols=119  Identities=19%  Similarity=0.259  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+..+++.....+..+|+|+|||+|..+..++. .+..+|+|+|+|+.++.+|+  +++++    .+. ..++.+..+
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~--~Na~~----~~~-~~~~~i~~~  167 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIAR--KNAER----HGV-SDRFFVRKG  167 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHH--HHHHH----TTC-TTSEEEEES
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHH--HHHHH----cCC-CceeEEeec
Confidence            33444555544444556899999999999998875 56666999999998666654  44442    343 347889999


Q ss_pred             CCCCCcccccccceEEEEEeccccCc----------CH----------HHHHHHHH-hcCCCCcEEEEe
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAFGP----------TV----------DHALKERF-QDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~~~----------~~----------~~~l~e~~-r~LkpGG~~i~~  168 (268)
                      |+.+.. ......+|+|++|..+-..          ++          ...++++. +.|+|||.+++-
T Consensus       168 ~~~~~~-~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         168 EFLEPF-KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             STTGGG-GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             cccccc-ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            987633 2332367889988653211          11          12344544 689999999884

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.89  E-value=3.3e-09  Score=88.12  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+.++++.+++.++++|||||||+|.++..++.. +. +|++||+++.+....+  ++.        ...++++++++
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~-~v~avE~D~~l~~~l~--~~~--------~~~~n~~i~~~   74 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CN-FVTAIEIDHKLCKTTE--NKL--------VDHDNFQVLNK   74 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SS-EEEEECSCHHHHHHHH--HHT--------TTCCSEEEECC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cC-ceEEEeeccchHHHHH--HHh--------hcccchhhhhh
Confidence            456788999999999999999999999999999875 44 4999999986333222  111        13469999999


Q ss_pred             CCCCCcccccccceEEEEEecccc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFAF  144 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~~  144 (268)
                      |+.+++++.. ... .|+.|..++
T Consensus        75 D~l~~~~~~~-~~~-~vv~NLPYn   96 (235)
T d1qama_          75 DILQFKFPKN-QSY-KIFGNIPYN   96 (235)
T ss_dssp             CGGGCCCCSS-CCC-EEEEECCGG
T ss_pred             hhhhcccccc-ccc-eeeeeehhh
Confidence            9998876543 223 455564444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.85  E-value=9.3e-09  Score=83.73  Aligned_cols=108  Identities=17%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK  119 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~  119 (268)
                      ...+..+++.+...++.+|||.|||+|.++..+.+..+. ..++|+|+++.+..+                 .....+++
T Consensus         5 ~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-----------------~~~~~~~~   67 (223)
T d2ih2a1           5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-----------------PPWAEGIL   67 (223)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-----------------CTTEEEEE
T ss_pred             HHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-----------------cccceeee
Confidence            345566888889999999999999999999887766543 469999999863222                 13567889


Q ss_pred             cCCCCCcccccccceEEEEEeccccC----c-------------------------CH-HHHHHHHHhcCCCCcEEEEe
Q psy17227        120 GDFLTEEHREKITQASIVFVNNFAFG----P-------------------------TV-DHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       120 gD~~~l~~~~~~~d~dvv~~~~~~~~----~-------------------------~~-~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|....+..   ..+|++++|..+..    .                         +. ...+...++.|||||++++.
T Consensus        68 ~~~~~~~~~---~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I  143 (223)
T d2ih2a1          68 ADFLLWEPG---EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  143 (223)
T ss_dssp             SCGGGCCCS---SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eehhccccc---cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence            998764422   35678887754210    0                         01 12246677899999998764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.84  E-value=2.8e-09  Score=85.27  Aligned_cols=117  Identities=12%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             HHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         45 SRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        45 ~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +.+++.+.. -.+.+|||+.||||.++++++. .|+..|+.||.+..++.+  .+++++    ..+.......+++.|..
T Consensus        32 ealFn~l~~~~~~~~vLDlFaGsG~~glEalS-RGA~~v~fVE~~~~a~~~--ik~Ni~----~l~~~~~~~~~~~~d~~  104 (183)
T d2ifta1          32 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALS-RQAKKVTFLELDKTVANQ--LKKNLQ----TLKCSSEQAEVINQSSL  104 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHH--HHHHHH----HTTCCTTTEEEECSCHH
T ss_pred             HHHHHHhhhhcccceEeecccCccceeeeeee-ecceeeEEeecccchhhh--HhhHHh----hhccccccccccccccc
Confidence            345555432 2677999999999999999765 688889999999864333  334443    33433346788888765


Q ss_pred             CC-cccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227        124 TE-EHREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS  168 (268)
Q Consensus       124 ~l-~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~  168 (268)
                      +. ........+|+||++..+........+..+.  ..|+++|.+++-
T Consensus       105 ~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         105 DFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             HHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            42 1112223589999987765544566666665  479999999984

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.79  E-value=1.4e-09  Score=91.06  Aligned_cols=90  Identities=17%  Similarity=0.192  Sum_probs=67.2

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ..+.++++.+++.++++|||||||+|.++..+++. +. +|++||+++.+....+  +.       .+ ..++++++++|
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~-~v~aIE~D~~l~~~l~--~~-------~~-~~~n~~ii~~D   83 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SK-QVTSIELDSHLFNLSS--EK-------LK-LNTRVTLIHQD   83 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SS-EEEESSSSCSSSSSSS--CT-------TT-TCSEEEECCSC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cC-ceeEeeecccchhhhh--hh-------hh-hccchhhhhhh
Confidence            45678999999999999999999999999999875 44 4999999998554432  11       11 24689999999


Q ss_pred             CCCCcccccccceEEEEEeccccC
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFG  145 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~  145 (268)
                      +.+++++..  ..+.|+.|..++.
T Consensus        84 ~l~~~~~~~--~~~~vv~NLPY~I  105 (245)
T d1yuba_          84 ILQFQFPNK--QRYKIVGNIPYHL  105 (245)
T ss_dssp             CTTTTCCCS--SEEEEEEECCSSS
T ss_pred             hhccccccc--eeeeEeeeeehhh
Confidence            999886543  2335556655554

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=2.6e-08  Score=86.36  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         51 INATPDDVFVDLGSGVGQVVLQVAAATG-----CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ++.+++.+|||.|||+|.++..++....     ...++|+|+++.+..+|+++....         ..+..+.++|....
T Consensus       113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~---------~~~~~~~~~d~~~~  183 (328)
T d2f8la1         113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---------RQKMTLLHQDGLAN  183 (328)
T ss_dssp             HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---------TCCCEEEESCTTSC
T ss_pred             hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh---------hhhhhhhccccccc
Confidence            4677888999999999999988775432     225899999998777776543221         24677888887654


Q ss_pred             cccccccceEEEEEecccc-CcC-----------------HH-HHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHREKITQASIVFVNNFAF-GPT-----------------VD-HALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~-~~~-----------------~~-~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.   ...+|+|++|..+. ...                 .. ..+..+++.|||||++++.
T Consensus       184 ~~---~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I  242 (328)
T d2f8la1         184 LL---VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  242 (328)
T ss_dssp             CC---CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc---cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence            32   23578999986531 111                 11 1367788999999998754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.6e-08  Score=80.95  Aligned_cols=103  Identities=9%  Similarity=0.050  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      ..-++.+++|||||.|-+++.+|-..+..+++.+|.+..  +++    .+++.++..++  .+++++++.++++...   
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~K--K~~----FL~~~~~~L~L--~nv~v~~~R~E~~~~~---  130 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK--RVR----FLRQVQHELKL--ENIEPVQSRVEEFPSE---  130 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH--HHH----HHHHHHHHTTC--SSEEEEECCTTTSCCC---
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcccceEEEEecchH--HHH----HHHHHHHHcCC--cceeeeccchhhhccc---
Confidence            334567999999999999999998877767999999974  222    12222234444  4899999999987532   


Q ss_pred             cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|++-++   ..+...+.-+...+++||++++.
T Consensus       131 ~~fD~V~sRA~---~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         131 PPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             SCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             cccceehhhhh---cCHHHHHHHHHHhcCCCcEEEEE
Confidence            24688888766   44566677777899999999986

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-08  Score=83.77  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc----ccc
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH----REK  130 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~----~~~  130 (268)
                      +..++||||||+|.+++.+|.+.+..+++|+|+|+.++.+|+  ++++    ..+. ..++.+++.+..+.-+    ...
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~--~N~~----~n~l-~~~~~~~~~~~~~~~~~~~~~~~  133 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK--KNVE----QNNL-SDLIKVVKVPQKTLLMDALKEES  133 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH--HHHH----HTTC-TTTEEEEECCTTCSSTTTSTTCC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH--HHHH----HhCC-CcceeeeeeccHHhhhhhhhhcc
Confidence            345899999999999999998876666999999998666655  4443    2344 3578888876654321    111


Q ss_pred             ccceEEEEEeccccC
Q psy17227        131 ITQASIVFVNNFAFG  145 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~  145 (268)
                      ...+|+|++|..++.
T Consensus       134 ~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         134 EIIYDFCMCNPPFFA  148 (250)
T ss_dssp             SCCBSEEEECCCCC-
T ss_pred             cCceeEEEecCcccc
Confidence            234788999987664

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.72  E-value=2.1e-08  Score=90.18  Aligned_cols=121  Identities=24%  Similarity=0.221  Sum_probs=84.7

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-------------cEEEEEeCCCChhHHHHHHHHHHHHH
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-------------KICWGVEKADLPAKYAEMHTVFKRWM  105 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-------------~~v~GiD~s~~~~~~a~~~~~~~~~~  105 (268)
                      +....+..+++.++..++.+|+|-.||+|+++..+++....             ..++|+|+++.+..+++++..+    
T Consensus       146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l----  221 (425)
T d2okca1         146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL----  221 (425)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH----
T ss_pred             cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh----
Confidence            33455666788888888999999999999999887664321             1289999999888887755432    


Q ss_pred             HHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCc-----------------CH-HHHHHHHHhcCCCCcEEEE
Q psy17227        106 QWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP-----------------TV-DHALKERFQDLKDGARIVS  167 (268)
Q Consensus       106 ~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~-----------------~~-~~~l~e~~r~LkpGG~~i~  167 (268)
                        +|.......+.++|..+.+.   ...+|+|++|..+...                 +. ...+..+.+.|||||++++
T Consensus       222 --~g~~~~~~~i~~~d~l~~~~---~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         222 --HGIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             --TTCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --cCCccccceeecCchhhhhc---ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence              34333456788888876432   2357889988654110                 11 2356788899999999876


Q ss_pred             e
Q psy17227        168 S  168 (268)
Q Consensus       168 ~  168 (268)
                      .
T Consensus       297 I  297 (425)
T d2okca1         297 V  297 (425)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.65  E-value=6.7e-08  Score=79.60  Aligned_cols=106  Identities=15%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-cc-c
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HR-E  129 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~-~  129 (268)
                      ....+||+||+++|.-+..+|...+. .+++.+|.++.....|  +++++    ..|.. .+++++.||+.+ ++ +. +
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A--~~~~~----~~g~~-~~i~~~~g~a~~~L~~l~~~  130 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG--LPVIK----KAGVD-HKIDFREGPALPVLDEMIKD  130 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHH--HHHHH----HTTCG-GGEEEEESCHHHHHHHHHHC
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHH--HHHHH----Hhccc-cceeeeehHHHHHHHHHHhc
Confidence            34578999999999999999987653 4799999999744443  34444    34553 589999999975 23 11 1


Q ss_pred             --cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 --KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 --~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ....+|+||+.+.  .......+..+.+.|+|||.+++-
T Consensus       131 ~~~~~~fD~iFiDa~--k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         131 EKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             GGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             cccCCceeEEEeccc--hhhhHHHHHHHHhhcCCCcEEEEc
Confidence              1224788999743  244667788888999999999995

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.1e-07  Score=73.81  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .++.++.+ ++++.+||||||++|+.+..++...+. .+++|+|+.+-                   ....++.++++|+
T Consensus        11 ~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-------------------~~i~~~~~~~~d~   71 (180)
T d1ej0a_          11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-------------------DPIVGVDFLQGDF   71 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-------------------CCCTTEEEEESCT
T ss_pred             HHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-------------------cccCCceEeeccc
Confidence            34666665 478999999999999999988876543 57999999983                   1235899999999


Q ss_pred             CCCcccc------cccceEEEEEeccccC-----cCHH-------HHHHHHHhcCCCCcEEEE
Q psy17227        123 LTEEHRE------KITQASIVFVNNFAFG-----PTVD-------HALKERFQDLKDGARIVS  167 (268)
Q Consensus       123 ~~l~~~~------~~~d~dvv~~~~~~~~-----~~~~-------~~l~e~~r~LkpGG~~i~  167 (268)
                      .+.....      ....+|+|++......     .|..       .++.-+.++|||||.||+
T Consensus        72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~  134 (180)
T d1ej0a_          72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence            8744211      1235899998755321     1111       123334479999999997

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=9.8e-08  Score=75.93  Aligned_cols=111  Identities=16%  Similarity=0.235  Sum_probs=78.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +.++++.+.+.+|+.++|..||.|+.+..+... +. +|+|+|.++.++..++      +      ....++.++++++.
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~-~viaiD~D~~ai~~a~------~------~~~~~~~~~~~~f~   72 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GG-RVIGLDQDPEAVARAK------G------LHLPGLTVVQGNFR   72 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TC-EEEEEESCHHHHHHHH------H------TCCTTEEEEESCGG
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cC-cEEEEhhhhhHHHHHh------h------ccccceeEeehHHH
Confidence            467788889999999999999999999998875 33 4999999997443332      1      12358999999998


Q ss_pred             CCccc---ccccceEEEEEeccc---c--Cc-----CHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHR---EKITQASIVFVNNFA---F--GP-----TVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~---~~~~d~dvv~~~~~~---~--~~-----~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++...   .+...+|.|+...-+   +  .+     .....|......|+|||++++.
T Consensus        73 ~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii  130 (182)
T d1wg8a2          73 HLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI  130 (182)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence            86521   112357777765321   1  11     1233456667899999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.51  E-value=1.5e-07  Score=75.45  Aligned_cols=114  Identities=12%  Similarity=0.095  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCCCHHHHH----HHHHhC---C-cEEEEEeCCCChhHHHHHH------------HHHHHHHHHhccc--
Q psy17227         54 TPDDVFVDLGSGVGQVVLQ----VAAATG---C-KICWGVEKADLPAKYAEMH------------TVFKRWMQWYGKR--  111 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~----la~~~~---~-~~v~GiD~s~~~~~~a~~~------------~~~~~~~~~~~~~--  111 (268)
                      .+.-+|+++|||+|.=+..    +....+   . -+++|.|+|+.++..|+..            ....++....+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456899999999984333    333222   1 2599999998754444310            0001110000000  


Q ss_pred             ---------cccEEEEEcCCCCCcccccccceEEEEEeccc--cCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227        112 ---------HGEFRLVKGDFLTEEHREKITQASIVFVNNFA--FGPT-VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       112 ---------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~--~~~~-~~~~l~e~~r~LkpGG~~i~~  168 (268)
                               ...+.+...+....+.+ ....+|+|+|-+++  +.++ ..++++.+++.|+|||.+++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccC-CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     02356666666553321 12357899997663  4444 456788899999999998874

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.51  E-value=7.4e-08  Score=83.05  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||.||.|.|..+..+++..+..+|+.||+++..+.+++  +.+..... .....++++++.+|+.+.-- .....
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~--~~f~~~~~-~~~~d~rv~i~~~Da~~~l~-~~~~~  151 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAK--RHMPEWHQ-GAFDDPRAVLVIDDARAYLE-RTEER  151 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHH--HHCHHHHT-TGGGCTTEEEEESCHHHHHH-HCCCC
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHH--hcCccccc-CccCCCceEEEEchHHHHhh-hcCCc
Confidence            4557899999999999998877666667999999998666654  33322111 11234689999999987421 11235


Q ss_pred             eEEEEEeccc-cC-cC------HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFA-FG-PT------VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~-~~-~~------~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+- +. ..      -...++.+.+.|+|||.+++.
T Consensus       152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            7899887541 11 11      245678889999999999863

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.49  E-value=3.9e-07  Score=75.10  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=70.6

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh---C-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT---G-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~---~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..++..+  +| .+||+||++.|+-+..+|...   + ..+++|+|+++.....+.             ....++++++|
T Consensus        73 ~eli~~~--KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-------------~~~~~I~~i~g  136 (232)
T d2bm8a1          73 HDMLWEL--RP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-------------SDMENITLHQG  136 (232)
T ss_dssp             HHHHHHH--CC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-------------GGCTTEEEEEC
T ss_pred             HHHHHHh--CC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-------------ccccceeeeec
Confidence            4566554  34 589999999999887766432   2 346999999875322211             12368999999


Q ss_pred             CCCCCcccccc--cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227        121 DFLTEEHREKI--TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS  170 (268)
Q Consensus       121 D~~~l~~~~~~--~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~  170 (268)
                      |..+....+..  ...|.|++.+- |..+....-.+.+..|||||.+|+-|.
T Consensus       137 Ds~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         137 DCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKWAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             ccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHHHHhcccCcCCEEEEEcC
Confidence            99876543221  12467888766 443322222245689999999999643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=2.1e-07  Score=77.01  Aligned_cols=106  Identities=11%  Similarity=0.061  Sum_probs=77.5

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-  130 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-  130 (268)
                      +..++.+++|||+|.|-+++.+|-..+..+++-+|-+..  +.+    .++...+..++  .++.++++.++++..... 
T Consensus        67 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~K--K~~----FL~~v~~~L~L--~n~~i~~~R~E~~~~~~~~  138 (239)
T d1xdza_          67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK--RIT----FLEKLSEALQL--ENTTFCHDRAETFGQRKDV  138 (239)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH--HHH----HHHHHHHHHTC--SSEEEEESCHHHHTTCTTT
T ss_pred             cccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHH--HHH----HHHHHHHHhCC--CCcEEEeehhhhccccccc
Confidence            334677999999999999999998888778999999964  221    12222234454  489999999887543211 


Q ss_pred             ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...+|+|++-++   ..+...+.-....+++||++++.
T Consensus       139 ~~~~D~v~sRAv---a~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         139 RESYDIVTARAV---ARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             TTCEEEEEEECC---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccceEEEEhhh---hCHHHHHHHHhhhcccCCEEEEE
Confidence            235788998766   45677777778899999999986

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.6e-07  Score=76.06  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+.++++.+++.++++||+||+|+|.++..+++. +. ++++||+++.+...  .++.+.    .. ....+++++.+
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~-~v~aiE~D~~l~~~--L~~~~~----~~-~~~~~~~~i~~   77 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AK-KVVACELDPRLVAE--LHKRVQ----GT-PVASKLQVLVG   77 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SS-EEEEEESCHHHHHH--HHHHHT----TS-TTGGGEEEEES
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CC-cEEEEEEccchhHH--HHHHHh----hh-ccccchhhhHH
Confidence            456788999999999999999999999999999876 44 49999999863222  222221    11 11358999999


Q ss_pred             CCCCCcccccccceEEEEEeccc
Q psy17227        121 DFLTEEHREKITQASIVFVNNFA  143 (268)
Q Consensus       121 D~~~l~~~~~~~d~dvv~~~~~~  143 (268)
                      |+.+.+++.    ...|+.|..+
T Consensus        78 D~l~~~~~~----~~~vV~NLPY   96 (278)
T d1zq9a1          78 DVLKTDLPF----FDTCVANLPY   96 (278)
T ss_dssp             CTTTSCCCC----CSEEEEECCG
T ss_pred             HHhhhhhhh----hhhhhcchHH
Confidence            999876543    1245566443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=3.6e-07  Score=79.84  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=74.3

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      +..+++.++..++++|||+-||+|.+++.+|+.  +.+|+|||+++.++..|+  ++++    ..|  ..|++|+++|..
T Consensus       201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~--~na~----~n~--i~n~~~~~~~~~  270 (358)
T d1uwva2         201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQ--QNAR----LNG--LQNVTFYHENLE  270 (358)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHH--HHHH----HTT--CCSEEEEECCTT
T ss_pred             HHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHH--HhHH----hcc--cccceeeecchh
Confidence            345677788899999999999999999998874  445999999997555544  3333    234  358999999997


Q ss_pred             CC-c-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TE-E-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +. + .......+|+|+++..=-.  ....+..+.+ ++|.-.++++
T Consensus       271 ~~~~~~~~~~~~~d~vilDPPR~G--~~~~~~~l~~-~~~~~ivYVS  314 (358)
T d1uwva2         271 EDVTKQPWAKNGFDKVLLDPARAG--AAGVMQQIIK-LEPIRIVYVS  314 (358)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTC--CHHHHHHHHH-HCCSEEEEEE
T ss_pred             hhhhhhhhhhccCceEEeCCCCcc--HHHHHHHHHH-cCCCEEEEEe
Confidence            63 2 1122234578887643111  2345555554 3666666554

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.5e-07  Score=86.62  Aligned_cols=123  Identities=18%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC------------------cEEEEEeCCCChhHHHHHHHH
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC------------------KICWGVEKADLPAKYAEMHTV  100 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~------------------~~v~GiD~s~~~~~~a~~~~~  100 (268)
                      +....+..+++.+...++.+|+|-.||+|+++..+.+....                  ..++|+|+++.+..+++|+..
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            33455666778888899999999999999999876653211                  137999999988888775443


Q ss_pred             HHHHHHHhcccc---ccEEEEEcCCCCCcccccccceEEEEEecccc---C-----------cCH-HHHHHHHHhcCCCC
Q psy17227        101 FKRWMQWYGKRH---GEFRLVKGDFLTEEHREKITQASIVFVNNFAF---G-----------PTV-DHALKERFQDLKDG  162 (268)
Q Consensus       101 ~~~~~~~~~~~~---~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~---~-----------~~~-~~~l~e~~r~LkpG  162 (268)
                      +      ++...   ..-.+..++....+.. ....+|+|++|..+-   .           .+. ...+..+++.||||
T Consensus       228 l------~~~~~~i~~~~~~~~~~~l~~d~~-~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g  300 (524)
T d2ar0a1         228 L------HDIEGNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  300 (524)
T ss_dssp             T------TTCCCBGGGTBSEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             h------hcccccccccchhhhhhhhhhccc-ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence            2      12111   1224555665543321 123578999886531   1           111 23578888999999


Q ss_pred             cEEEEe
Q psy17227        163 ARIVSS  168 (268)
Q Consensus       163 G~~i~~  168 (268)
                      |++++.
T Consensus       301 Gr~aiI  306 (524)
T d2ar0a1         301 GRAAVV  306 (524)
T ss_dssp             EEEEEE
T ss_pred             CcEEEE
Confidence            998765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.38  E-value=3.2e-07  Score=77.66  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH----HHHhccccccEEEEEcCCCCCcccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW----MQWYGKRHGEFRLVKGDFLTEEHRE  129 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~i~~~~gD~~~l~~~~  129 (268)
                      .+..+||-||+|.|..+..+.+ ++..+|+.||+++.++.+++  +.+...    -.......++++++.+|+.+.--  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~--~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~--  145 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSK--DLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--  145 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHH--HHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHH--HhhhhccchhhhhhccCCCCceEEEChHHHHHh--
Confidence            4557899999999999988775 56667999999998777765  211100    00011234689999999976422  


Q ss_pred             cccceEEEEEeccccCcC-----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPT-----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~-----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ....+|+|++..+-....     -...++.+.+.|+|||.+++.
T Consensus       146 ~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         146 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            224578999876532111     145678889999999999874

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.7e-07  Score=78.24  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ...+.++++.+++.+++.||+||||+|.++..+++. +.. +++||+++.+...      +++    .-...++++++++
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~-v~aiEiD~~l~~~------L~~----~~~~~~~~~ii~~   74 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQ-LTVIELDRDLAAR------LQT----HPFLGPKLTIYQQ   74 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSC-EEEECCCHHHHHH------HHT----CTTTGGGEEEECS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCc-eEEEEeccchhHH------HHH----HhhhccchhHHhh
Confidence            456788999999999999999999999999998864 444 9999999852222      211    1112468999999


Q ss_pred             CCCCCccc
Q psy17227        121 DFLTEEHR  128 (268)
Q Consensus       121 D~~~l~~~  128 (268)
                      |+.++++.
T Consensus        75 D~l~~~~~   82 (252)
T d1qyra_          75 DAMTFNFG   82 (252)
T ss_dssp             CGGGCCHH
T ss_pred             hhhhhccc
Confidence            99987643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=4.3e-07  Score=77.45  Aligned_cols=110  Identities=12%  Similarity=0.113  Sum_probs=76.3

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||=||.|.|..++.+++..+..+|+.||+++.++.+++  +.+....  .+...++++++.+|+.+.-- .....
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~--~~~~~~~--~~~~d~rv~v~~~Da~~~l~-~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAAR--KYLKQTS--CGFDDPRAEIVIANGAEYVR-KFKNE  162 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHH--HHCHHHH--GGGGCTTEEEEESCHHHHGG-GCSSC
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHH--HHHHhhc--ccccCCCcEEEhhhHHHHHh-cCCCC
Confidence            3457899999999999999887666677999999998666654  3332211  12335799999999976321 22235


Q ss_pred             eEEEEEecccc--CcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAF--GPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~--~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+-.  .+.    -...++.+.+.|+|||.+++.
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            78999875521  111    245678888999999999974

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=8e-06  Score=69.38  Aligned_cols=89  Identities=16%  Similarity=0.212  Sum_probs=65.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .+..++..+|++|||+.||.|+=+.++|...+ ..+++++|+++.  ++..+++++++    .|.  .++.+...|+.++
T Consensus        86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~--R~~~l~~~l~r----~g~--~~~~~~~~d~~~~  157 (293)
T d2b9ea1          86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK--RLASMATLLAR----AGV--SCCELAEEDFLAV  157 (293)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHH----TTC--CSEEEEECCGGGS
T ss_pred             cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHH--HHHHHHHHHHh----cCc--cceeeeehhhhhh
Confidence            44556889999999999999999988887654 457999999975  55555555543    443  5899999999876


Q ss_pred             ccccc-ccceEEEEEeccc
Q psy17227        126 EHREK-ITQASIVFVNNFA  143 (268)
Q Consensus       126 ~~~~~-~~d~dvv~~~~~~  143 (268)
                      +..+. ...+|.|++...|
T Consensus       158 ~~~~~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         158 SPSDPRYHEVHYILLDPSC  176 (293)
T ss_dssp             CTTCGGGTTEEEEEECCCC
T ss_pred             cccccccceeeEEeecCcc
Confidence            53322 2357888876543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.3e-06  Score=74.01  Aligned_cols=112  Identities=11%  Similarity=0.087  Sum_probs=76.8

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI  131 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~  131 (268)
                      .....++||-||-|.|..+..+.+..+..+|+.+|+++..+.+++  +.+....  .....++++++.+|+.+.=- ...
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~--~~~~~~~--~~~~d~rv~i~~~Da~~~l~-~~~  149 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSK--KFLPGMA--IGYSSSKLTLHVGDGFEFMK-QNQ  149 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCHHHH--GGGGCTTEEEEESCHHHHHH-TCS
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHH--hhchhhc--cccCCCCceEEEccHHHHHh-cCC
Confidence            344557899999999999999887666778999999998777765  3332211  12345799999999876321 122


Q ss_pred             cceEEEEEeccc--cCcC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        132 TQASIVFVNNFA--FGPT---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       132 ~d~dvv~~~~~~--~~~~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..+|+|++..+-  ..+.   -...++.+.+.|+|||.+++.
T Consensus       150 ~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         150 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            357899987552  1111   123467888999999999974

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.19  E-value=5e-06  Score=71.36  Aligned_cols=118  Identities=16%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ....++.++|++|||+.||.|+=+..++...+. ..++++|+++.  ++..+.+++++    .|.  .++.+...|...+
T Consensus       108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~--r~~~l~~~~~r----~~~--~~i~~~~~d~~~~  179 (313)
T d1ixka_         108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDEN--RLRETRLNLSR----LGV--LNVILFHSSSLHI  179 (313)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHHH----HTC--CSEEEESSCGGGG
T ss_pred             hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHH--HHHHHHHHHHH----HHh--hcccccccccccc
Confidence            445578999999999999999999888876543 46999999975  55544444443    343  5888888998776


Q ss_pred             cccccccceEEEEEeccccC-------cC---------H-------HHHHHHHHhcCCCCcEEE-EeCCCCCC
Q psy17227        126 EHREKITQASIVFVNNFAFG-------PT---------V-------DHALKERFQDLKDGARIV-SSKSFCPL  174 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~~-------~~---------~-------~~~l~e~~r~LkpGG~~i-~~~~~~~~  174 (268)
                      +..+.  .+|.|++.+.|-.       |+         .       .+.+...++.|||||++| +|=++.|.
T Consensus       180 ~~~~~--~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e  250 (313)
T d1ixka_         180 GELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE  250 (313)
T ss_dssp             GGGCC--CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred             ccccc--cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence            64333  4677887654311       11         1       112355667899999887 44334443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=1.3e-06  Score=73.67  Aligned_cols=110  Identities=12%  Similarity=0.076  Sum_probs=77.6

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      .+..+||-||-|.|..+..+.+..+..+++.|||++..+.+++  +.+....  .....++++++.+|+...-- .....
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~--~~~~~~~--~~~~d~r~~i~~~D~~~~l~-~~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSK--KFLPSIA--GKLDDPRVDVQVDDGFMHIA-KSENQ  148 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHH--HHCHHHH--TTTTSTTEEEEESCSHHHHH-TCCSC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHH--HhChhhc--ccccCCCeEEEechHHHHHh-hcCCC
Confidence            4557899999999999999887667778999999998666655  3332211  11235699999999876321 11235


Q ss_pred             eEEEEEeccccC---cC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAFG---PT--VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~~---~~--~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+-..   ..  -...++.+.+.|+|||.++..
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            789998765211   11  345678888999999999974

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1.2e-05  Score=67.87  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      ..+..++..+|++|||+.+|.|+=+..+|.......++++|+++.  ++..+++++++    .|.  .++.....|....
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~--R~~~l~~~~~r----~g~--~~~~~~~~~~~~~  164 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKR----LGM--KATVKQGDGRYPS  164 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHH----TTC--CCEEEECCTTCTH
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchh--hhhhHhhhhhc----ccc--cceeeeccccccc
Confidence            355567899999999999999999999987655557999999997  55555555543    443  3555555554433


Q ss_pred             cccccccceEEEEEecccc-------CcCHH----------------HHHHHHHhcCCCCcEEE-EeCCCCCC
Q psy17227        126 EHREKITQASIVFVNNFAF-------GPTVD----------------HALKERFQDLKDGARIV-SSKSFCPL  174 (268)
Q Consensus       126 ~~~~~~~d~dvv~~~~~~~-------~~~~~----------------~~l~e~~r~LkpGG~~i-~~~~~~~~  174 (268)
                      .... ...+|.|++.+.|-       .|+..                ..+....+.|||||++| +|=++.|.
T Consensus       165 ~~~~-~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         165 QWCG-EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             HHHT-TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             hhcc-cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence            2221 13477888776541       12211                12455567899999988 43234343

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=2.4e-06  Score=72.62  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||=||-|.|..++.+.+..+..+++.+|+++..+.+++  +.+....  .....++++++.+|..+.--......
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~--~~f~~~~--~~~~~~r~~i~~~Da~~~l~~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSK--QFFPDVA--IGYEDPRVNLVIGDGVAFLKNAAEGS  154 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHH--HHCHHHH--GGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHH--Hhchhhh--ccccCCCcEEEEccHHHHHhhccccC
Confidence            3456899999999999999887667677999999998666655  3332211  12345799999999865321111125


Q ss_pred             eEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+- ..+.    -...++.+.+.|+|||.+++.
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            7889987552 1111    244578888999999999985

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.04  E-value=1.2e-06  Score=74.95  Aligned_cols=110  Identities=13%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      ....+||-||-|.|..++.+.+..+..+|+.||+++..+.+++  +.+....  .+...++++++.+|+.+.-- .....
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~--~~~~~~~--~~~~dprv~i~i~Da~~~l~-~~~~~  179 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAK--KFLPGMS--CGFSHPKLDLFCGDGFEFLK-NHKNE  179 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHH--HHCTTTS--GGGGCTTEEEECSCHHHHHH-HCTTC
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHH--hhchhhc--cccCCCCeEEEEchHHHHHH-hCCCC
Confidence            4456899999999999999887666667999999998666654  3222110  12345799999999976321 22235


Q ss_pred             eEEEEEecccc--CcC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227        134 ASIVFVNNFAF--GPT---VDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       134 ~dvv~~~~~~~--~~~---~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+|++..+--  .+.   -...++.+.+.|+|||.+++.
T Consensus       180 yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         180 FDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             EEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            78999875521  111   133467888999999999985

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=1e-05  Score=70.92  Aligned_cols=104  Identities=10%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-------------cccEEEEEcC
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-------------HGEFRLVKGD  121 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-------------~~~i~~~~gD  121 (268)
                      .+.+|||..||+|..++..|++.|...|+..|+|+.++.+++  ++++    .++..             ...+.+.+.|
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~--~N~~----lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK--RNVM----LNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH--HHHH----HHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH--HHHH----hcCccccccccccccccccceeEeehhh
Confidence            567899999999999999999888888999999998555543  4443    22221             1247777888


Q ss_pred             CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.... ...+|+|-++.+   ..+...+....+.++.||.+.+|
T Consensus       119 a~~~~~~~-~~~fDvIDiDPf---Gs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         119 ANRLMAER-HRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             HHHHHHHS-TTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhHhh-cCcCCcccCCCC---CCcHHHHHHHHHHhccCCEEEEE
Confidence            75543222 124788988864   34567888889999999999877

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.93  E-value=2.2e-05  Score=64.50  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=68.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC----hhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL----PAKYAEMHTVFKRWMQWYGKRHGEFRLV  118 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~i~~~  118 (268)
                      .+.++.++..++++.+|+|||||.|+.+-.+|...+...+.|+++--.    +...+.           .  ...-+++.
T Consensus        54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~-----------~--~~ni~~~~  120 (257)
T d2p41a1          54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMST-----------Y--GWNLVRLQ  120 (257)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCS-----------T--TGGGEEEE
T ss_pred             HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccc-----------c--ccccccch
Confidence            345677777889999999999999999998877654445777777321    111100           0  11234555


Q ss_pred             EcC-CCCCcccccccceEEEEEeccccCcCH-------HHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227        119 KGD-FLTEEHREKITQASIVFVNNFAFGPTV-------DHALKERFQDLKDGARIVSSKSFCP  173 (268)
Q Consensus       119 ~gD-~~~l~~~~~~~d~dvv~~~~~~~~~~~-------~~~l~e~~r~LkpGG~~i~~~~~~~  173 (268)
                      ..+ +..++  .  ..+|+|+|...-..++.       ..++.-+.+.|+|||-|++ .-++|
T Consensus       121 ~~~dv~~l~--~--~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv-KVl~p  178 (257)
T d2p41a1         121 SGVDVFFIP--P--ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV-KVLNP  178 (257)
T ss_dssp             CSCCTTTSC--C--CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE-EESCC
T ss_pred             hhhhHHhcC--C--CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE-EECCC
Confidence            444 33333  1  35788988754333321       1223444478999999887 34554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=1.8e-05  Score=61.26  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             HHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...+++||++||-+||| .|.++..+|+..|++ |+++|.|+.....++          +.|.   ...+...+-.+
T Consensus        18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~~~k~~~a~----------~lGa---~~~i~~~~~~~   83 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKREDAM----------KMGA---DHYIATLEEGD   83 (168)
T ss_dssp             HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHH----------HHTC---SEEEEGGGTSC
T ss_pred             HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhcccc-ccccccchhHHHHhh----------ccCC---cEEeeccchHH
Confidence            44567899999999999999 677888888889986 999999987333222          2332   11121111111


Q ss_pred             CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .. ......+|+++.... .+..    .+....+.|+|||++++.
T Consensus        84 ~~-~~~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          84 WG-EKYFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             HH-HHSCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEEC
T ss_pred             HH-HhhhcccceEEEEecCCccc----hHHHHHHHhhccceEEEe
Confidence            11 111123455554211 1111    244568899999999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.68  E-value=4.8e-05  Score=60.49  Aligned_cols=106  Identities=14%  Similarity=-0.048  Sum_probs=67.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      -++..++++|++||-+|||. |.++..+|+..++.+|+.+|.++....++      +    ..|    --.++  +..+.
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a------~----~~G----a~~~~--~~~~~   80 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA------K----AQG----FEIAD--LSLDT   80 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH------H----HTT----CEEEE--TTSSS
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh------h----hcc----ccEEE--eCCCc
Confidence            35778999999999999998 55677778888988899999998522222      1    222    12222  22222


Q ss_pred             cccc------cccceEEEEEecc----------ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE------KITQASIVFVNNF----------AFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~------~~~d~dvv~~~~~----------~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.+      +-.-+|+++-..-          .........+..+.+.++|||++++.
T Consensus        81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            1111      0113566663211          01122456899999999999999986

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=6.8e-05  Score=64.26  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             CcHHHHHHHHHHcCCC------CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc
Q psy17227         39 TSFDLISRMIDQINAT------PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH  112 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~------~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~  112 (268)
                      +....+.++++.+++.      ++++|||||.|.|.++..+....+..++++||+++.   +..   .+++.   .  ..
T Consensus        21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~---~~~---~L~~~---~--~~   89 (322)
T d1i4wa_          21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS---LYK---FLNAK---F--EG   89 (322)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH---HHH---HHHHH---T--TT
T ss_pred             CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH---HHH---HHHHh---c--cC
Confidence            3456677888888765      467899999999999999988766667999999985   222   22221   1  23


Q ss_pred             ccEEEEEcCCCCCc
Q psy17227        113 GEFRLVKGDFLTEE  126 (268)
Q Consensus       113 ~~i~~~~gD~~~l~  126 (268)
                      ++++++.+|+.++.
T Consensus        90 ~~~~ii~~D~l~~~  103 (322)
T d1i4wa_          90 SPLQILKRDPYDWS  103 (322)
T ss_dssp             SSCEEECSCTTCHH
T ss_pred             CCcEEEeCchhhcc
Confidence            58999999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.55  E-value=0.00023  Score=54.59  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=64.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++++|++||=+||| .|.++..+|+..|++ |+++|.++.-..++      +    +.|.   ...+..-+..+
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~-vi~v~~~~~r~~~a------~----~~ga---~~~~~~~~~~~   82 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVA------K----NCGA---DVTLVVDPAKE   82 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHH------H----HTTC---SEEEECCTTTS
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhccc-ccccchHHHHHHHH------H----HcCC---cEEEecccccc
Confidence            34677899999999999999 566788888888885 99999998522221      1    2221   22232222111


Q ss_pred             Cc--c----ccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--H----REK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~----~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      -.  .    .+. -..+|+++-. .    .-...+....+.|+|||++++.
T Consensus        83 ~~~~~~~~~~~~~g~g~D~vid~-~----g~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          83 EESSIIERIRSAIGDLPNVTIDC-S----GNEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             CHHHHHHHHHHHSSSCCSEEEEC-S----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             ccchhhhhhhcccccCCceeeec-C----CChHHHHHHHHHHhcCCceEEE
Confidence            11  0    000 0125666532 1    2246688888999999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=7.6e-05  Score=58.27  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=63.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      +.+...+++|++||-+|||. |.++..+|+..|+.+|+++|.++....+      ++    +.|.   .. ++  |..+.
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~------a~----~lGa---~~-vi--~~~~~   83 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKL------AE----EIGA---DL-TL--NRRET   83 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHH------HH----HTTC---SE-EE--ETTTS
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccc------cc----cccc---eE-EE--ecccc
Confidence            33445789999999999984 7788889999998779999999852222      11    2332   11 22  22222


Q ss_pred             cccc---------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 EHRE---------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~~~~---------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ++.+         +..-+|+|+-. . -.   ...+....+.|+|||++++.
T Consensus        84 ~~~~~~~~i~~~~~~~g~Dvvid~-v-G~---~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          84 SVEERRKAIMDITHGRGADFILEA-T-GD---SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEEC-S-SC---TTHHHHHHHHEEEEEEEEEC
T ss_pred             chHHHHHHHHHhhCCCCceEEeec-C-Cc---hhHHHHHHHHhcCCCEEEEE
Confidence            1100         01126777642 2 11   24567788999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.47  E-value=4.7e-05  Score=59.33  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=65.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE  125 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l  125 (268)
                      .++..++++|++||=+|||. |.++..+|+..|+.+|+++|.++.  +...    ++    ..|.    ..++.-.-.++
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~--r~~~----a~----~lGa----~~~i~~~~~~~   84 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI--CVEA----AK----FYGA----TDILNYKNGHI   84 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH--HHHH----HH----HHTC----SEEECGGGSCH
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh--hHHH----HH----hhCc----cccccccchhH
Confidence            46778999999999999997 888999999889877999999974  2221    11    2332    12222221111


Q ss_pred             c--ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 E--HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 ~--~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .  ..+  +-.-+|+++-..-     -...+...++.++|||++++.
T Consensus        85 ~~~v~~~t~g~G~D~vid~~g-----~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          85 EDQVMKLTNGKGVDRVIMAGG-----GSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             HHHHHHHTTTSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhhccCcceEEEccC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            1  000  0012677664311     124567778999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.43  E-value=0.00045  Score=53.54  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=69.6

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      .....+++..++++|++||=+|||. |.++..+|+..|+.+|+.+|.++.-..+++          +.|.    -.++..
T Consensus        15 T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~----------~~Ga----~~~i~~   80 (174)
T d1e3ia2          15 SGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----------ALGA----TDCLNP   80 (174)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----------HTTC----SEEECG
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH----------HhCC----CcccCC
Confidence            3444566788999999999999998 778888899999988999999986222222          2332    122221


Q ss_pred             CCCCCcc---cc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227        121 DFLTEEH---RE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS  168 (268)
Q Consensus       121 D~~~l~~---~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~  168 (268)
                      .-.+...   ..  ...-+|+++-.     ......+.+.++.++|| |++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vie~-----~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          81 RELDKPVQDVITELTAGGVDYSLDC-----AGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEES-----SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             ccchhhhhhhHhhhhcCCCcEEEEe-----cccchHHHHHHHHhhcCCeEEEec
Confidence            1111110   00  01135566532     22356789999999996 999885

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.40  E-value=4.4e-05  Score=62.97  Aligned_cols=92  Identities=16%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             HHHHcCCCCCC--EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc---ccccEEEEEcC
Q psy17227         47 MIDQINATPDD--VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK---RHGEFRLVKGD  121 (268)
Q Consensus        47 ll~~l~~~~~~--~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~i~~~~gD  121 (268)
                      +.+.++++++.  +|||.=||.|.-++.+|. .|+. |+++|-+|.+..+.+  +.+++.......   ...+++++++|
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~-~G~~-V~~iEr~p~l~~ll~--d~l~r~~~~~~~~~~~~~ri~li~~D  153 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCR-VRMLERNPVVAALLD--DGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHH-HTCC-EEEEECCHHHHHHHH--HHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHh-CCCE-EEEEccCHHHHHHHH--HHHHHHHhCchhHHHHhhhheeecCc
Confidence            66667777654  899999999999998886 5887 999999996433322  222221110000   12389999999


Q ss_pred             CCCCcccccccceEEEEEeccc
Q psy17227        122 FLTEEHREKITQASIVFVNNFA  143 (268)
Q Consensus       122 ~~~l~~~~~~~d~dvv~~~~~~  143 (268)
                      ..++-- .....+|+|++...+
T Consensus       154 s~~~L~-~~~~~~DvIYlDPMF  174 (250)
T d2oyra1         154 SLTALT-DITPRPQVVYLDPMF  174 (250)
T ss_dssp             HHHHST-TCSSCCSEEEECCCC
T ss_pred             HHHHHh-ccCCCCCEEEECCCC
Confidence            765321 111246789887554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00024  Score=54.85  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             HHHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+.+..++++|++||-.|+  |.|.+++.+|+..|+. |++++-+++  +.    +.+    ++.|..    .++  |..
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~--~~----~~~----~~~Ga~----~vi--~~~   81 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEE--GQ----KIV----LQNGAH----EVF--NHR   81 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHH--HH----HHH----HHTTCS----EEE--ETT
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccCcc-ccccccccc--cc----ccc----cccCcc----ccc--ccc
Confidence            3556678999999999997  5778899999999997 899998864  21    111    223421    122  333


Q ss_pred             CCccccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.+.      ...+|+++-..-      ...+...++.|+|||+++..
T Consensus        82 ~~~~~~~i~~~t~~~g~d~v~d~~g------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          82 EVNYIDKIKKYVGEKGIDIIIEMLA------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             STTHHHHHHHHHCTTCEEEEEESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cccHHHHhhhhhccCCceEEeeccc------HHHHHHHHhccCCCCEEEEE
Confidence            3322111      123677664311      34678888999999999985

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.18  E-value=0.00056  Score=52.14  Aligned_cols=103  Identities=22%  Similarity=0.195  Sum_probs=61.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++++|++||=+|||. |.++..+|+..|+. |+++|.++.  +++.    +    ++.|.    -.++..+-.+
T Consensus        18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~-Vi~~~~~~~--~~~~----a----~~~Ga----~~~i~~~~~~   82 (166)
T d1llua2          18 KGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLH-VAAIDIDDA--KLEL----A----RKLGA----SLTVNARQED   82 (166)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----H----HHTTC----SEEEETTTSC
T ss_pred             HHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCc-cceecchhh--HHHh----h----hccCc----cccccccchh
Confidence            445678999999999999986 55577778888865 999999975  2221    1    12332    2233323222


Q ss_pred             Cc--ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE--HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~--~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..  ........+.++...     .-...+....+.|+|||++++.
T Consensus        83 ~~~~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          83 PVEAIQRDIGGAHGVLVTA-----VSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HHHHHHHHHSSEEEEEECC-----SCHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHhhcCCccccccc-----ccchHHHHHHHHhcCCcEEEEE
Confidence            11  001111222333221     1235678889999999999985

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0011  Score=50.87  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=64.5

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+++.++++|++||=+|||..++ +..+|+..|+.+|+++|.++.-..++      +    +.|..    .++.-+-.+
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a------~----~~Ga~----~~~~~~~~~   82 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA------K----EIGAD----LVLQISKES   82 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH------H----HTTCS----EEEECSSCC
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH------H----HhCCc----ccccccccc
Confidence            356778999999999999987555 66667778987799999998522222      1    23321    122222222


Q ss_pred             Cc-----ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EE-----HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~-----~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ..     ... .-..+|+++-. .    .-...+....+.++|||++++.
T Consensus        83 ~~~~~~~~~~~~g~g~Dvvid~-~----G~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          83 PQEIARKVEGQLGCKPEVTIEC-T----GAEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEC-S----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             cccccccccccCCCCceEEEec-c----CCchhHHHHHHHhcCCCEEEEE
Confidence            11     000 01235666542 1    1245688889999999999986

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.85  E-value=0.0019  Score=49.62  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ....++..++++||++||=+|||.-+ ++..+|+..|+..++.+|.++.  +++.    ++    +.|.    .+++.-+
T Consensus        16 a~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~--k~~~----a~----~~Ga----~~~i~~~   81 (174)
T d1f8fa2          16 GAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES--RLEL----AK----QLGA----THVINSK   81 (174)
T ss_dssp             HHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH--HHHH----HH----HHTC----SEEEETT
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH--HHHH----HH----HcCC----eEEEeCC
Confidence            33456777899999999999998644 4667778889987899999975  2221    11    2332    2334333


Q ss_pred             CCCCc-----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEE-----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~-----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      -.+..     +.++  -+|+++-.     ......+....+.++|||++++.
T Consensus        82 ~~~~~~~i~~~t~g--g~D~vid~-----~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          82 TQDPVAAIKEITDG--GVNFALES-----TGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             TSCHHHHHHHHTTS--CEEEEEEC-----SCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcCHHHHHHHHcCC--CCcEEEEc-----CCcHHHHHHHHhcccCceEEEEE
Confidence            22211     1111  25666642     12356778889999999999975

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.76  E-value=0.004  Score=47.83  Aligned_cols=49  Identities=16%  Similarity=0.140  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCC
Q psy17227         42 DLISRMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ..+..+++..++++|++||=+|||..++ +..+|+..|+.+|+++|.++.
T Consensus        14 Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          14 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            3445567778999999999999987655 556677789888999999986

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.68  E-value=0.0018  Score=49.36  Aligned_cols=104  Identities=17%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             HHHHHcCCCCCCEEEEEcC-C-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGS-G-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGC-G-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+.+.+++++++||=+|| | .|.++..+++..|..+|+++|.++.-..++      +    +.|.   . .++..+-.
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~------~----~~Ga---~-~~i~~~~~   83 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA------K----RAGA---D-YVINASMQ   83 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH------H----HHTC---S-EEEETTTS
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH------H----HcCC---c-eeeccCCc
Confidence            4567789999999999997 3 556677778888877799999997521211      1    2332   1 23333332


Q ss_pred             CCc--ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEE--HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~--~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..  ...  ....+|+++-.     ..-...+....+.++|||++++.
T Consensus        84 ~~~~~~~~~~~~~~~d~vid~-----~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          84 DPLAEIRRITESKGVDAVIDL-----NNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             CHHHHHHHHTTTSCEEEEEES-----CCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             CHHHHHHHHhhcccchhhhcc-----cccchHHHhhhhhcccCCEEEEe
Confidence            221  000  01236666642     12345667778999999999986

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0021  Score=49.00  Aligned_cols=101  Identities=16%  Similarity=0.195  Sum_probs=62.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+.+.++++|++||=+|||. |.++..+|+..|+. ++++|.++.-...+      +    +.|..    .++  |..+
T Consensus        21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~-~i~~~~~~~~~~~a------~----~lGad----~~i--~~~~   83 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAA------K----ALGAD----EVV--NSRN   83 (168)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHH------H----HHTCS----EEE--ETTC
T ss_pred             HHHHHhCCCCCCEEEEeccchHHHHHHHHhhccccc-chhhccchhHHHHH------h----ccCCc----EEE--ECch
Confidence            455778999999999999975 66788888888987 67899887522221      1    23321    222  2222


Q ss_pred             Ccc-cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEH-REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~-~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ... ......+|+++-..-     -...+....+.++|||++++.
T Consensus        84 ~~~~~~~~~~~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          84 ADEMAAHLKSFDFILNTVA-----APHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             HHHHHTTTTCEEEEEECCS-----SCCCHHHHHTTEEEEEEEEEC
T ss_pred             hhHHHHhcCCCceeeeeee-----cchhHHHHHHHHhcCCEEEEe
Confidence            211 111123666664311     112356777899999999985

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.39  E-value=0.0065  Score=45.76  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=61.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      ..+...+++||++||=.|||.-++ +..+|+..|+. |+++|.++.  ++..        ++..|..    .++  |..+
T Consensus        18 ~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~-v~~~~~~~~--r~~~--------~k~~Ga~----~~~--~~~~   80 (168)
T d1rjwa2          18 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDE--KLEL--------AKELGAD----LVV--NPLK   80 (168)
T ss_dssp             HHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHH--HHHH--------HHHTTCS----EEE--CTTT
T ss_pred             HHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCe-EeccCCCHH--Hhhh--------hhhcCcc----eec--cccc
Confidence            455677899999999999998665 55566667775 999999875  2211        2233321    111  2222


Q ss_pred             Ccc----cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEH----REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~----~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++    .+.....+.++....     -...+....+.|+|||++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          81 EDAAKFMKEKVGGVHAAVVTAV-----SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             SCHHHHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             chhhhhcccccCCCceEEeecC-----CHHHHHHHHHHhccCCceEec
Confidence            111    111122333333221     246688889999999999986

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.012  Score=45.52  Aligned_cols=103  Identities=15%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             HHHHHHcCCCCC--CEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227         45 SRMIDQINATPD--DVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG  120 (268)
Q Consensus        45 ~~ll~~l~~~~~--~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g  120 (268)
                      ..+.+..++++|  ++||=-|  .|.|.+++++|+..|+..|+++.-+++  ...+    +   ++..|.    -.++  
T Consensus        18 ~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e--~~~~----l---~~~~ga----d~vi--   82 (187)
T d1vj1a2          18 IGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE--KCLF----L---TSELGF----DAAV--   82 (187)
T ss_dssp             HHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHH--HHHH----H---HHHSCC----SEEE--
T ss_pred             HHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHH--HHhh----h---hhcccc----eEEe--
Confidence            345566678876  7899877  578999999999999987888888863  1111    1   112232    1222  


Q ss_pred             CCCCCccccc-----ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        121 DFLTEEHREK-----ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       121 D~~~l~~~~~-----~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      |..+-++.+.     ..-+|+|+=. .     -...+...++.|+|||+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~GvDvv~D~-v-----Gg~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          83 NYKTGNVAEQLREACPGGVDVYFDN-V-----GGDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ETTSSCHHHHHHHHCTTCEEEEEES-S-----CHHHHHHHHTTEEEEEEEEEC
T ss_pred             eccchhHHHHHHHHhccCceEEEec-C-----CchhHHHHhhhccccccEEEe
Confidence            3333222111     1126777632 2     145688899999999999975

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.20  E-value=0.005  Score=47.18  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             HHHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+.+..++++|++||=.|  .|.|.+++.+|+..|+. ++++.-+++  ..    +.+    +..|.   . .++  |..
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~--~~----~~l----~~~Ga---~-~vi--~~~   78 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDA--KR----EML----SRLGV---E-YVG--DSR   78 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHH--HH----HHH----HTTCC---S-EEE--ETT
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhcccccc-ceeeecccc--cc----ccc----ccccc---c-ccc--cCC
Confidence            355666899999999877  46678899999999997 777776653  11    112    22332   1 222  233


Q ss_pred             CCccccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +..+.+.      ...+|+++-...      ...+....+.|+|+|+++..
T Consensus        79 ~~~~~~~v~~~t~~~g~d~v~d~~g------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          79 SVDFADEILELTDGYGVDVVLNSLA------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CSTHHHHHHHHTTTCCEEEEEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred             ccCHHHHHHHHhCCCCEEEEEeccc------chHHHHHHHHhcCCCEEEEE
Confidence            3222111      124777775322      24677788999999999985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.19  E-value=0.0041  Score=47.49  Aligned_cols=98  Identities=10%  Similarity=0.002  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-cc
Q psy17227         52 NATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-RE  129 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~  129 (268)
                      .++||++||=+|||..+. +..+++..|+..++++|.++.  ++.    .++    ..|    ...++..+-..... .+
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~--k~~----~~~----~~g----a~~~i~~~~~~~~~~~~   94 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE--KLK----LAE----RLG----ADHVVDARRDPVKQVME   94 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH--HHH----HHH----HTT----CSEEEETTSCHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH--HHH----HHh----hcc----cceeecCcccHHHHHHH
Confidence            478999999999987665 467777788887999999974  221    111    223    22334332111110 00


Q ss_pred             --cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 --KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 --~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                        ....+|+++-..     .-...+....+.|+|||++++.
T Consensus        95 ~~~~~g~d~vid~~-----g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          95 LTRGRGVNVAMDFV-----GSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             HTTTCCEEEEEESS-----CCHHHHHHGGGGEEEEEEEEEC
T ss_pred             hhCCCCceEEEEec-----CcchHHHHHHHHHhCCCEEEEE
Confidence              012356666421     1244678889999999999985

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.007  Score=46.20  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             HHHHcCCCCCCEEEEEcCC--CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSG--VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT  124 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG--~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~  124 (268)
                      +.+..+++||++||=.|+|  .|.+++++|+..|+. |++++.|+.  +.+    .+    +..|.   . +++  |..+
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~--k~~----~~----~~lGa---~-~vi--~~~~   82 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQ--KAQ----SA----LKAGA---W-QVI--NYRE   82 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHH--HHH----HH----HHHTC---S-EEE--ETTT
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCe-EeecccchH--HHH----HH----HhcCC---e-EEE--ECCC
Confidence            4445689999999998655  688899999999987 999999985  221    11    22342   1 223  3333


Q ss_pred             Cccccc------ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        125 EEHREK------ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       125 l~~~~~------~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++.+.      -..+|+++-. .  ..   ..+......++|+|++++.
T Consensus        83 ~d~~~~v~~~t~g~g~d~v~d~-~--g~---~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          83 EDLVERLKEITGGKKVRVVYDS-V--GR---DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEEC-S--CG---GGHHHHHHTEEEEEEEEEC
T ss_pred             CCHHHHHHHHhCCCCeEEEEeC-c--cH---HHHHHHHHHHhcCCeeeec
Confidence            322111      1235665542 2  11   2467788999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.10  E-value=0.0042  Score=51.52  Aligned_cols=54  Identities=22%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ....+.+++... ..+|+.|||.=||+|..+.. |...|.. .+|+|++++...+++
T Consensus       236 P~~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~A-A~~lgR~-~Ig~El~~~y~~~a~  289 (320)
T d1booa_         236 PAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLV-AERESRK-WISFEMKPEYVAASA  289 (320)
T ss_dssp             CTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHH-HHHTTCE-EEEEESCHHHHHHHH
T ss_pred             chHHHHHhhhhc-ccCCCEEEecCCCCcHHHHH-HHHcCCc-EEEEeCCHHHHHHHH
Confidence            345667777665 57899999999999999974 5667776 999999998666554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.03  E-value=0.0063  Score=48.85  Aligned_cols=53  Identities=28%  Similarity=0.380  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      ...+.++++.. ..+|+.|||-=||+|..+. +|...|.. .+|+|+++.-..+|+
T Consensus       199 ~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~-aa~~~~R~-~ig~El~~~y~~~a~  251 (256)
T d1g60a_         199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAI-VAKKLGRN-FIGCDMNAEYVNQAN  251 (256)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEESSCTTCHHHH-HHHHTTCE-EEEEESCHHHHHHHH
T ss_pred             hhHHHHHHHHh-CCCCCEEEECCCCchHHHH-HHHHcCCe-EEEEeCCHHHHHHHH
Confidence            34566777766 4789999999999999997 46667766 999999997555544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.96  E-value=0.014  Score=44.39  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ...+++..++++|++||=+|||.++ .+..+++..++.+|+++|.++.
T Consensus        17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            3456677899999999999997554 5666677788888999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.94  E-value=0.017  Score=44.22  Aligned_cols=104  Identities=20%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCC--CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSG--VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD  121 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG--~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD  121 (268)
                      ...+.+..++++|++||=.|+|  .|..++.+|+..|++ |+++.-+++  +..    .+    +..|.    -..+.-+
T Consensus        18 ~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~-vi~~~~~~~--~~~----~~----~~~Ga----~~vi~~~   82 (182)
T d1v3va2          18 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDE--KIA----YL----KQIGF----DAAFNYK   82 (182)
T ss_dssp             HHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHH--HHH----HH----HHTTC----SEEEETT
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCE-EEEeCCCHH--HHH----HH----Hhhhh----hhhcccc
Confidence            3445667789999999988874  577889999999986 999998864  221    11    12332    2223222


Q ss_pred             CCCCc---ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        122 FLTEE---HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       122 ~~~l~---~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      -.+..   ... ...-+|+|+= ..  .   ...+.+.++.|+|||++++.
T Consensus        83 ~~~~~~~~~~~~~~~Gvd~v~D-~v--G---~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          83 TVNSLEEALKKASPDGYDCYFD-NV--G---GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             SCSCHHHHHHHHCTTCEEEEEE-SS--C---HHHHHHHGGGEEEEEEEEEC
T ss_pred             cccHHHHHHHHhhcCCCceeEE-ec--C---chhhhhhhhhccCCCeEEee
Confidence            22211   000 1123677663 22  1   45788999999999999986

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.85  E-value=0.011  Score=47.97  Aligned_cols=55  Identities=18%  Similarity=0.306  Sum_probs=43.3

Q ss_pred             CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227         39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE   96 (268)
Q Consensus        39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~   96 (268)
                      .....+.++++.. ..+|+.|||-=||+|..+.. |...|.. ++|+|+++....+++
T Consensus       192 kP~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~A-a~~lgR~-~ig~El~~~y~~~a~  246 (279)
T d1eg2a_         192 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARV-AIQEGRN-SICTDAAPVFKEYYQ  246 (279)
T ss_dssp             CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHH-HHHHTCE-EEEEESSTHHHHHHH
T ss_pred             cchhHHHHHHHhh-cCCCCEEEecCCCCcHHHHH-HHHhCCe-EEEEeCCHHHHHHHH
Confidence            4455667777766 47999999999999999974 5667776 999999998666554

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.79  E-value=0.013  Score=45.03  Aligned_cols=104  Identities=11%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             HHHHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         45 SRMIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ..+.+.-..++|++||=-|  .|.|.+++++|+..|+. |+++.-|++  ..+.        ++..|... -+.. ..+.
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~--k~~~--------~~~lGa~~-vi~~-~~~~   87 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAA--EHDY--------LRVLGAKE-VLAR-EDVM   87 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTT--CHHH--------HHHTTCSE-EEEC-C---
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchH--HHHH--------HHhcccce-eeec-chhH
Confidence            4455566778899999988  46788999999999998 899988875  2222        12334221 1111 1111


Q ss_pred             CC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+ .... ....+|+|+=+ . -    ...+....+.|+|||++++.
T Consensus        88 ~~~~~~~-~~~gvD~vid~-v-g----g~~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2          88 AERIRPL-DKQRWAAAVDP-V-G----GRTLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             ------C-CSCCEEEEEEC-S-T----TTTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHh-hccCcCEEEEc-C-C----chhHHHHHHHhCCCceEEEe
Confidence            11 0000 11246666532 2 1    23478889999999999986

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.76  E-value=0.02  Score=43.29  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      ...+.+..+++||++||=.|||. |.+++.+|+..|+..|+++|.++.-..+++          +.|.    -.++.-+-
T Consensus        17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak----------~lGa----~~~i~~~~   82 (176)
T d2fzwa2          17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----------EFGA----TECINPQD   82 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----------HHTC----SEEECGGG
T ss_pred             HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH----------HhCC----cEEEeCCc
Confidence            34456678999999999999874 444677788889888999999986222222          2342    12222211


Q ss_pred             CCCcc----cc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEEH----RE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~~----~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .+-+.    .. ...-+|+++-..     .....++.....+++||.+++.
T Consensus        83 ~~~~~~~~~~~~~~~g~D~vid~~-----G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          83 FSKPIQEVLIEMTDGGVDYSFECI-----GNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhHHHHHHHHHcCCCCcEeeecC-----CCHHHHHHHHHhhcCCceeEEE
Confidence            11110    00 001256666421     1245677888899999877653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.62  E-value=0.0063  Score=46.45  Aligned_cols=99  Identities=19%  Similarity=0.249  Sum_probs=62.5

Q ss_pred             HHHHHcCCCCCCEEEEEcC-C-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLGS-G-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGC-G-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      ..+...+++||++||=.|. | .|.+++.+|+..|+. |++++.+++-...++          +.|..  . -+   |..
T Consensus        18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~~~~~----------~lGa~--~-~i---~~~   80 (171)
T d1iz0a2          18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLALPL----------ALGAE--E-AA---TYA   80 (171)
T ss_dssp             HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSHHHH----------HTTCS--E-EE---EGG
T ss_pred             HHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccc-ccccccccccccccc----------ccccc--e-ee---ehh
Confidence            3556788999999999884 4 478888899999986 999998875222222          23321  1 11   232


Q ss_pred             CCccc-ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 TEEHR-EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~l~~~-~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.+.. ....-+|+|+- ..  .+    .+...++.|+|||+++..
T Consensus        81 ~~~~~~~~~~g~D~v~d-~~--G~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          81 EVPERAKAWGGLDLVLE-VR--GK----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             GHHHHHHHTTSEEEEEE-CS--CT----THHHHHTTEEEEEEEEEC
T ss_pred             hhhhhhhcccccccccc-cc--ch----hHHHHHHHHhcCCcEEEE
Confidence            22210 11123677763 21  22    356778999999999975

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.53  E-value=0.013  Score=44.89  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=41.0

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHH
Q psy17227         43 LISRMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYA   95 (268)
Q Consensus        43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a   95 (268)
                      ....+++..++++|++||=+|||..++ +..+++..|+.+|+++|.+++-.++|
T Consensus        17 ~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A   70 (176)
T d1d1ta2          17 GYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA   70 (176)
T ss_dssp             HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH
Confidence            344566778899999999999987555 66667778988899999999743333

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.41  E-value=0.0037  Score=47.82  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCCC-HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227         55 PDDVFVDLGSGVG-QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ  133 (268)
Q Consensus        55 ~~~~vLDiGCG~G-~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d  133 (268)
                      +..+|+=||+|.- ..++..|+..|.. |+.+|.++.  .+.+    ++.   ..   ..++++...+-..+.  +...+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~~~~--~l~~----l~~---~~---~~~~~~~~~~~~~l~--~~~~~   95 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINVE--RLSY----LET---LF---GSRVELLYSNSAEIE--TAVAE   95 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HHH---HH---GGGSEEEECCHHHHH--HHHHT
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeCcHH--HHHH----HHH---hh---cccceeehhhhhhHH--Hhhcc
Confidence            3467999999974 4477778888987 999999975  2222    221   11   135556554433332  33346


Q ss_pred             eEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEE
Q psy17227        134 ASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       134 ~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~  167 (268)
                      +|+|+......... +.-.-+++.+.+|||..+|=
T Consensus        96 aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             CcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            78887654433222 22234889999999999984

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.20  E-value=0.036  Score=47.37  Aligned_cols=33  Identities=9%  Similarity=-0.070  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q psy17227        230 YSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQ  262 (268)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (268)
                      .+-+.+...+|.....+++.-=..+-.+++...
T Consensus       299 ~~~~~~a~~~RA~~e~~l~~hfg~~i~D~lF~r  331 (359)
T d1m6ex_         299 EEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHR  331 (359)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            345677888888887766652133334444433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.97  E-value=0.033  Score=39.99  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--cccccceEEEEEec
Q psy17227         64 SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REKITQASIVFVNN  141 (268)
Q Consensus        64 CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~~~d~dvv~~~~  141 (268)
                      ||.|..+..+++......++.||.++..  ..    .+.         ...+.++.||..+...  ..+..+++.+++. 
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~--~~----~~~---------~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~-   69 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENV--RK----KVL---------RSGANFVHGDPTRVSDLEKANVRGARAVIVN-   69 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTH--HH----HHH---------HTTCEEEESCTTSHHHHHHTTCTTCSEEEEC-
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHH--HH----HHH---------hcCccccccccCCHHHHHHhhhhcCcEEEEe-
Confidence            7889999999998755568999999862  21    111         1368899999988542  1233456566652 


Q ss_pred             cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        142 FAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       142 ~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       ...+...-.+....|.+.|...+++.
T Consensus        70 -~~~d~~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          70 -LESDSETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             -CSSHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             -ccchhhhHHHHHHHHHHCCCceEEEE
Confidence             12222333345556888898877764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.85  E-value=0.073  Score=40.75  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=58.9

Q ss_pred             HHHHHcCCCCCCEEEEEcC---CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227         46 RMIDQINATPDDVFVDLGS---GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF  122 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiGC---G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~  122 (268)
                      .+....+++||++||=+..   |.|..++.+|+..|+. |+++--++.  ...+..+.    +++.|... -+..-..|.
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~--~~~~~~~~----~~~lGad~-vi~~~~~~~   90 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRP--NLDEVVAS----LKELGATQ-VITEDQNNS   90 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCT--THHHHHHH----HHHHTCSE-EEEHHHHHC
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEeccc--ccchHHhh----hhhccccE-EEeccccch
Confidence            3445568999988887732   3567788999999997 777755543  22211111    22344221 111111122


Q ss_pred             CCCc--ccc----cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        123 LTEE--HRE----KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       123 ~~l~--~~~----~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      .++.  ..+    ....+|+++ +.. -    ...+...++.|+|||+++.+
T Consensus        91 ~~~~~~v~~~~~~~g~~vdvv~-D~v-g----~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          91 REFGPTIKEWIKQSGGEAKLAL-NCV-G----GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             GGGHHHHHHHHHHHTCCEEEEE-ESS-C----HHHHHHHHHTSCTTCEEEEC
T ss_pred             hHHHHHHHHHHhhccCCceEEE-ECC-C----cchhhhhhhhhcCCcEEEEE
Confidence            1111  000    112366666 322 1    33567778999999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.85  E-value=0.018  Score=44.43  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE----------EEcCCC
Q psy17227         55 PDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL----------VKGDFL  123 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~----------~~gD~~  123 (268)
                      +..+||=||+|+-+. ++..|...|+. |+.+|+++.  .+.    .+++    .+.+  .+++          ..+.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~-V~v~D~~~~--~~~----~l~~----l~~~--~i~~~~~~~~~~~~~~gyA~   94 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAA--TKE----QVES----LGGK--FITVDDEAMKTAETAGGYAK   94 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCST--THH----HHHH----TTCE--ECCC----------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCE-EEEEeccHH--HHH----HHHH----hhcc--eEEEeccccccccccccchh
Confidence            345799999997555 77778888997 999999986  222    2221    1111  1111          011111


Q ss_pred             CCc----------ccccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEE
Q psy17227        124 TEE----------HREKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       124 ~l~----------~~~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~  167 (268)
                      .+.          +.+...++|+|+......... +.-.-+++.+.+|||..++=
T Consensus        95 ~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1          95 EMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             -------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             hcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence            110          111133678888765543322 22234788999999999984

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.83  E-value=0.044  Score=45.10  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227         57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI  136 (268)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv  136 (268)
                      ++|||+=||.|++..-+ +..|.+.+.++|+++.+.      +.++.        +-.-.++++|+.++... ...++|+
T Consensus         1 mk~~~lF~G~Gg~~~gl-~~aG~~~~~a~e~d~~a~------~~~~~--------N~~~~~~~~Di~~~~~~-~~~~~dl   64 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGF-QKAGFRIICANEYDKSIW------KTYES--------NHSAKLIKGDISKISSD-EFPKCDG   64 (324)
T ss_dssp             CEEEEESCSSCHHHHHH-HHHTCEEEEEEECCHHHH------HHHHH--------HCCSEEEESCTTTSCGG-GSCCCSE
T ss_pred             CeEEEeCcCcCHHHHHH-HHCCCEEEEEEeCCHHHH------HHHHH--------HCCCCCccCChhhCCHh-HcccccE
Confidence            47999999999998754 456888778999998522      22221        11345688999998643 3346788


Q ss_pred             EEEeccc--c--------CcCHH-HHHH---HHHhcCCCCcEEE
Q psy17227        137 VFVNNFA--F--------GPTVD-HALK---ERFQDLKDGARIV  166 (268)
Q Consensus       137 v~~~~~~--~--------~~~~~-~~l~---e~~r~LkpGG~~i  166 (268)
                      ++....|  |        ..+.. ..+.   ++.+.++|--.++
T Consensus        65 l~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~l  108 (324)
T d1dcta_          65 IIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLA  108 (324)
T ss_dssp             EEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             EeecccccccccccccccccccccchHHHHHHHHHhhCCceeec
Confidence            8765433  1        12333 3333   3446788864443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.72  E-value=0.031  Score=42.36  Aligned_cols=103  Identities=13%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             HHHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227         46 RMIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL  123 (268)
Q Consensus        46 ~ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~  123 (268)
                      .+...-...++.+||=-|  .|.|.+++++|+..|+. |+++.-|++  +...        ++..|..  .+ +...|..
T Consensus        14 ~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~--k~~~--------~~~lGad--~v-i~~~~~~   79 (167)
T d1tt7a2          14 RLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNRE--AADY--------LKQLGAS--EV-ISREDVY   79 (167)
T ss_dssp             HHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSS--THHH--------HHHHTCS--EE-EEHHHHC
T ss_pred             HHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHH--HHHH--------HHhhccc--ce-Eeccchh
Confidence            344444455677788766  46788899999999998 999999886  2221        1233432  22 2222211


Q ss_pred             C-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        124 T-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       124 ~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      . .-.......+|+|+-. .     -...+.+..+.|+|||++++.
T Consensus        80 ~~~~~~~~~~gvd~vid~-v-----gg~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDP-V-----GGKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             SSCCCSSCCCCEEEEEES-C-----CTHHHHHHHTTEEEEEEEEEC
T ss_pred             chhhhcccCCCceEEEec-C-----cHHHHHHHHHHhccCceEEEe
Confidence            1 1000111235665532 1     134678899999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.45  E-value=0.04  Score=41.54  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=37.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCC
Q psy17227         44 ISRMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        44 ~~~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~   90 (268)
                      ...+.+..++++|++||=+|||.+.. +..+++..+...|+++|.+++
T Consensus        17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            34566778999999999999998555 555566678878999999986

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.97  E-value=0.08  Score=42.77  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=24.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH
Q psy17227         45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAA   76 (268)
Q Consensus        45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~   76 (268)
                      .+.+...+...+..++|-=||+|.+.+.+|..
T Consensus        40 ~~al~l~~w~~~~~LlDPmCGSGTilIEAAli   71 (249)
T d1o9ga_          40 QRALARLPGDGPVTLWDPCCGSGYLLTVLGLL   71 (249)
T ss_dssp             HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHH
T ss_pred             HHHhhhhcCCCCCceeccccCccHHHHHHHHH
Confidence            34444556677778999999999999998764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.24  Score=37.51  Aligned_cols=96  Identities=18%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             HcCCC-CCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227         50 QINAT-PDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-  125 (268)
Q Consensus        50 ~l~~~-~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-  125 (268)
                      ..+.. ++.+||=.|  .|.|.+++++|+..|+. |+++.-+++-...      ++    ..|.    -.++.-+-.+. 
T Consensus        25 ~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~k~~~------~~----~lGa----d~vi~~~~~~~~   89 (177)
T d1o89a2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTHEY------LK----SLGA----SRVLPRDEFAES   89 (177)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHH------HH----HHTE----EEEEEGGGSSSC
T ss_pred             HhCCCCCCCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchhHHHH------HH----hhcc----ccccccccHHHH
Confidence            34444 445777655  34777899999999998 8999999862221      11    2232    12222221111 


Q ss_pred             -cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        126 -EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       126 -~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                       .+..  ...|.++ +.+     -...+.+..+.|++||+++++
T Consensus        90 ~~l~~--~~~~~vv-D~V-----gg~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2          90 RPLEK--QVWAGAI-DTV-----GDKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             CSSCC--CCEEEEE-ESS-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHh--hcCCeeE-EEc-----chHHHHHHHHHhccccceEee
Confidence             1111  1234543 322     134678889999999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.44  E-value=0.27  Score=34.96  Aligned_cols=91  Identities=12%  Similarity=0.036  Sum_probs=52.4

Q ss_pred             EEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--cccc
Q psy17227         58 VFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKIT  132 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~~  132 (268)
                      +|+=+|+  |.++..+++.   .|.. |+.||.+++  .+.+    +..        ...+.++.||..+..+-  .+..
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~-v~vid~d~~--~~~~----~~~--------~~~~~vi~Gd~~~~~~l~~~~i~   64 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHD-IVLIDIDKD--ICKK----ASA--------EIDALVINGDCTKIKTLEDAGIE   64 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCE-EEEEESCHH--HHHH----HHH--------HCSSEEEESCTTSHHHHHHTTTT
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCC-cceecCChh--hhhh----hhh--------hhhhhhccCcccchhhhhhcChh
Confidence            4555554  8888888764   3555 999999985  2222    111        12567899999986532  2234


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS  167 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~  167 (268)
                      ++|.+++.  ...++.........+.+.+.-.++.
T Consensus        65 ~a~~vv~~--t~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          65 DADMYIAV--TGKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             TCSEEEEC--CSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             hhhhhccc--CCcHHHHHHHHHHHHHcCCceEEEE
Confidence            56666552  1222333334455577777755443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.30  E-value=0.15  Score=36.39  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc--cccceEEEE
Q psy17227         64 SGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--KITQASIVF  138 (268)
Q Consensus        64 CG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--~~~d~dvv~  138 (268)
                      ||.|.++..+|+.   .|.. |+.+|.+++  .+.+    +.         ......+.||..+...-.  +..++|+++
T Consensus         6 iG~G~~G~~la~~L~~~g~~-vvvid~d~~--~~~~----~~---------~~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHE-VLAVDINEE--KVNA----YA---------SYATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCC-CEEEESCHH--HHHH----TT---------TTCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             ECCCHHHHHHHHHHHHCCCe-EEEecCcHH--HHHH----HH---------HhCCcceeeecccchhhhccCCccccEEE
Confidence            4557877777764   4666 999999985  2211    11         123457789998865322  234666666


Q ss_pred             EeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        139 VNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       139 ~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +.  ....+....+..+.+.+.|...+++.
T Consensus        70 ~~--~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          70 VA--IGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             EC--CCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EE--cCchHHhHHHHHHHHHHcCCCcEEee
Confidence            52  12222334444555555566676653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.34  Score=35.30  Aligned_cols=95  Identities=8%  Similarity=0.040  Sum_probs=54.4

Q ss_pred             EEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--ccccc
Q psy17227         58 VFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REKIT  132 (268)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~~~  132 (268)
                      +++=+  |.|..+..+++.   .|.. ++.||.+++.  .....+..         ....+.++.||..+...  ..+..
T Consensus         5 HiII~--G~g~~g~~l~~~L~~~~~~-v~vId~d~~~--~~~~~~~~---------~~~~~~vi~Gd~~d~~~L~~a~i~   70 (153)
T d1id1a_           5 HFIVC--GHSILAINTILQLNQRGQN-VTVISNLPED--DIKQLEQR---------LGDNADVIPGDSNDSSVLKKAGID   70 (153)
T ss_dssp             CEEEE--CCSHHHHHHHHHHHHTTCC-EEEEECCCHH--HHHHHHHH---------HCTTCEEEESCTTSHHHHHHHTTT
T ss_pred             EEEEE--CCCHHHHHHHHHHHHcCCC-EEEEeccchh--HHHHHHHh---------hcCCcEEEEccCcchHHHHHhccc
Confidence            45444  557777777764   3555 8999999851  11111111         12478999999988553  12334


Q ss_pred             ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +++++++.  ...+..........|.+.|...+++.
T Consensus        71 ~a~~vi~~--~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          71 RCRAILAL--SDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             TCSEEEEC--SSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             cCCEEEEc--cccHHHHHHHHHHHHHhCCCCceEEE
Confidence            56666652  12222333344556778888877764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=91.96  E-value=0.068  Score=44.25  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227         55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA  134 (268)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~  134 (268)
                      .+.+|||+=||.|++..-+ +..|...+.++|+++.+...      ++.   +++    +  ..++|+.++... ...++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl-~~aG~~~v~a~e~d~~a~~~------~~~---N~~----~--~~~~Di~~~~~~-~~~~~   72 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLAL-ESCGAECVYSNEWDKYAQEV------YEM---NFG----E--KPEGDITQVNEK-TIPDH   72 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHH-HHTTCEEEEEECCCHHHHHH------HHH---HHS----C--CCBSCGGGSCGG-GSCCC
T ss_pred             CCCeEEEECccccHHHHHH-HHCCCeEEEEEeCCHHHHHH------HHH---HCC----C--CCcCchhcCchh-hccee
Confidence            5789999999999998754 55788877889999853222      221   122    1  236888887643 23467


Q ss_pred             EEEEEecc
Q psy17227        135 SIVFVNNF  142 (268)
Q Consensus       135 dvv~~~~~  142 (268)
                      |+++....
T Consensus        73 Dll~ggpP   80 (327)
T d2c7pa1          73 DILCAGFP   80 (327)
T ss_dssp             SEEEEECC
T ss_pred             eeeecccc
Confidence            88876543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.50  E-value=0.25  Score=41.82  Aligned_cols=44  Identities=14%  Similarity=0.170  Sum_probs=31.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-------CcEEEEEeCCCC
Q psy17227         47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-------CKICWGVEKADL   90 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-------~~~v~GiD~s~~   90 (268)
                      +...++..+.-+|+++|+|+|.++..+.....       ...++-+|.|+.
T Consensus        71 ~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~  121 (365)
T d1zkda1          71 VWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  121 (365)
T ss_dssp             HHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             HHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence            33445555566899999999999988766533       224788999984

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.61  E-value=0.27  Score=36.41  Aligned_cols=91  Identities=12%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             EEEEEcCCC-CHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227         58 VFVDLGSGV-GQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS  135 (268)
Q Consensus        58 ~vLDiGCG~-G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d  135 (268)
                      +|+=||||. |.......++.|. .+|+|+|.++.....      +.+    .+    .+.....+....    ...++|
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~------a~~----~~----~~~~~~~~~~~~----~~~~~d   64 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK------AVD----LG----IIDEGTTSIAKV----EDFSPD   64 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH------HHH----TT----SCSEEESCGGGG----GGTCCS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH------HHH----hh----cchhhhhhhhhh----hccccc
Confidence            477799976 3322222233443 469999999752221      111    11    222222222221    112456


Q ss_pred             EEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        136 IVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       136 vv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      +|+...  ........+.++...++++..++-.
T Consensus        65 lIila~--p~~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          65 FVMLSS--PVRTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             EEEECS--CHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             cccccC--Cchhhhhhhhhhhcccccccccccc
Confidence            776531  1223566678888899998877743

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.13  Score=42.56  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-cc
Q psy17227         56 DDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-IT  132 (268)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~  132 (268)
                      ..+|+|+-||.|++..-+ +..|.  ..+.++|+++.+..      .++.       ..+...++++|+.++...+- ..
T Consensus         2 p~kv~~lF~G~Gg~~~gl-~~aG~~~~~~~a~E~~~~a~~------~~~~-------n~~~~~~~~~di~~~~~~~~~~~   67 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHAL-RESCIPAQVVAAIDVNTVANE------VYKY-------NFPHTQLLAKTIEGITLEEFDRL   67 (343)
T ss_dssp             CEEEEEETCTTCHHHHHH-HHHTCSEEEEEEECCCHHHHH------HHHH-------HCTTSCEECSCGGGCCHHHHHHH
T ss_pred             CCEEEEcCcCccHHHHHH-HHcCCCCeEEEEEECCHHHHH------HHHH-------HCCCCCcccCchhhCCHhHcCCC
Confidence            358999999999998654 34565  34689999985222      2221       12456788899987653221 12


Q ss_pred             ceEEEEEecc
Q psy17227        133 QASIVFVNNF  142 (268)
Q Consensus       133 d~dvv~~~~~  142 (268)
                      ++|+++....
T Consensus        68 ~~Dll~ggpP   77 (343)
T d1g55a_          68 SFDMILMSPP   77 (343)
T ss_dssp             CCSEEEECCC
T ss_pred             CccEEEeecc
Confidence            5677775433

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.58  E-value=3.2  Score=34.18  Aligned_cols=118  Identities=10%  Similarity=0.057  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc------------cccccEEEEEcC
Q psy17227         54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG------------KRHGEFRLVKGD  121 (268)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~------------~~~~~i~~~~gD  121 (268)
                      .+...|+-||||.=.....+....+...++=||..+.+..-.+..++........+            ...++.+++-.|
T Consensus        95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D  174 (328)
T d1rjda_          95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  174 (328)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence            45567999999999888777655554346666665421111111111111001111            112478999999


Q ss_pred             CCCCcccc----c---ccceEEEEEecc--ccCcC-HHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227        122 FLTEEHRE----K---ITQASIVFVNNF--AFGPT-VDHALKERFQDLKDGARIVSSKSFC  172 (268)
Q Consensus       122 ~~~l~~~~----~---~~d~dvv~~~~~--~~~~~-~~~~l~e~~r~LkpGG~~i~~~~~~  172 (268)
                      +.+++..+    .   ....++++++.+  +..++ ....++.+.+.. |+|.|++++++.
T Consensus       175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~  234 (328)
T d1rjda_         175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  234 (328)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCC
Confidence            99864211    1   112356777766  24444 344455555555 567788887774

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.84  E-value=0.58  Score=40.06  Aligned_cols=39  Identities=18%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCC
Q psy17227         52 NATPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADL   90 (268)
Q Consensus        52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~   90 (268)
                      .++++..++|||+=.|..+..+++..+.  .+|+++|.++.
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~  249 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI  249 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence            4678899999999999998887776543  46999999986

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=1.4  Score=31.79  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             CEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc------ccc
Q psy17227         57 DVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE------HRE  129 (268)
Q Consensus        57 ~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~------~~~  129 (268)
                      |+|+=||+|. |........+.|.. |+.++.++....                    .......+....+      ..+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~-V~~~~r~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~   59 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHE-VQGWLRVPQPYC--------------------SVNLVETDGSIFNESLTANDPD   59 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSEE--------------------EEEEECTTSCEEEEEEEESCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCc-eEEEEcCHHHhh--------------------hhccccCCccccccccccchhh
Confidence            5788899977 43333323345776 999999875111                    1111111111100      001


Q ss_pred             cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227        130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS  168 (268)
Q Consensus       130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~  168 (268)
                      ...++|++++.  .-..+....++.+...+.++..+++.
T Consensus        60 ~~~~~D~iii~--vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          60 FLATSDLLLVT--LKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             HHHTCSEEEEC--SCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             hhcccceEEEe--ecccchHHHHHhhccccCcccEEeec
Confidence            11346777763  23456788888888899999888764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.85  Score=29.43  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227         47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL   90 (268)
Q Consensus        47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~   90 (268)
                      +......+++++||=.|.  |.|.+++++++..|++ |+++.-|++
T Consensus        23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~   67 (77)
T d1o8ca2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRES   67 (77)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGG
T ss_pred             HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHH
Confidence            444455678999988775  6678899999999997 999999986