Psyllid ID: psy17235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTSD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHHHHHHHHHHHcccEEEEEEEcccHcHHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHHccccHHHHHHHHHHHccccEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mqlwdtggmERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLcgnksdlegttpqvteadMENFWsrrssrrfkpqevvepqeVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTSD
Flexible Loop (DISEMBL)
mqlwdtggmeRVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTSD
Low Complexity Region (SEG)
MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKpqevvepqevveaeqvqqeaCDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTSD
Disordered region (IsUnstruct)
********MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK****************************************************************************NLMELAELEIKHAESQVNILKKCL*******
Disordered Region (DISOPRED)
MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEAC***************************************************AE*****
Disordered Region (DISEMBL)
********MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTSD
Disordered Region (DISPRO)
MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKE******************************QVNILKKCLAELK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAELKTSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q5R613	406	Sorting nexin-6 OS=Pongo	yes	N/A	0.4	0.167	0.573	4e-15
Q6P8X1	406	Sorting nexin-6 OS=Mus mu	yes	N/A	0.4	0.167	0.573	4e-15
Q9UNH7	406	Sorting nexin-6 OS=Homo s	no	N/A	0.4	0.167	0.573	4e-15
Q86XE0	403	Sorting nexin-32 OS=Homo	no	N/A	0.405	0.171	0.565	2e-14
Q9D8U8	404	Sorting nexin-5 OS=Mus mu	no	N/A	0.4	0.168	0.544	3e-14
B1H267	404	Sorting nexin-5 OS=Rattus	no	N/A	0.4	0.168	0.544	3e-14
Q9Y5X3	404	Sorting nexin-5 OS=Homo s	no	N/A	0.435	0.183	0.513	4e-14
Q80ZJ7	404	Sorting nexin-32 OS=Mus m	no	N/A	0.405	0.170	0.550	6e-14
Q3ZBM5	404	Sorting nexin-5 OS=Bos ta	yes	N/A	0.435	0.183	0.5	7e-14
P31584	203	GTP-binding protein yptV1	N/A	N/A	0.4	0.334	0.492	6e-11

>sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           ++V++AE  QQ  C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394

Query: 159 LKKCLAEL 166
           L+ CLA L
Sbjct: 395 LQNCLAVL 402

May be involved in several stages of intracellular trafficking. Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. Promotes lysosomal degradation of CDKN1B. May contribute to transcription regulation.
Pongo abelii (taxid: 9601)

>sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           ++V++AE  QQ  C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394

Query: 159 LKKCLAEL 166
           L+ CLA L
Sbjct: 395 LQNCLAVL 402

May be involved in several stages of intracellular trafficking. Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. May contribute to transcription regulation (By similarity). Promotes lysosomal degradation of CDKN1B.

Mus musculus (taxid: 10090)

>sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           ++V++AE  QQ  C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394

Query: 159 LKKCLAEL 166
           L+ CLA L
Sbjct: 395 LQNCLAVL 402

May be involved in several stages of intracellular trafficking. Promotes lysosomal degradation of CDKN1B (By similarity). Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. May contribute to transcription regulation.

Homo sapiens (taxid: 9606)

>sp|Q86XE0|SNX32_HUMAN Sorting nexin-32 OS=Homo sapiens GN=SNX32 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           +EV  AE  QQ  C +FE++SD AK+EL DFK RRV +F+KNL+ELAELE+KHA++   I
Sbjct: 332 REVRPAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLI 391

Query: 159 LKKCLAELK 167
           L+  L  LK
Sbjct: 392 LRNTLVALK 400

May be involved in several stages of intracellular trafficking.

Homo sapiens (taxid: 9606)

>sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5 OS=Mus musculus GN=Snx5 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 54/68 (79%)

Query: 96  VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
           ++ ++V  AE  QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA + 
Sbjct: 331 LKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390

Query: 156 VNILKKCL 163
           V++L+ C+
Sbjct: 391 VSLLQSCI 398

May be involved in several stages of intracellular trafficking. Plays a role in macropinocytosis. Plays a role in the internalization of EGFR after EGF stimulation.

Mus musculus (taxid: 10090)

>sp|B1H267|SNX5_RAT Sorting nexin-5 OS=Rattus norvegicus GN=Snx5 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 54/68 (79%)

Query: 96  VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
           ++ ++V  AE  QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA + 
Sbjct: 331 LKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390

Query: 156 VNILKKCL 163
           V++L+ C+
Sbjct: 391 VSLLQSCI 398

May be involved in several stages of intracellular trafficking. Plays a role in macropinocytosis. Plays a role in the internalization of EGFR after EGF stimulation.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 56/74 (75%)

Query: 96  VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
           ++ ++V  AE  QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA + 
Sbjct: 331 LKSKDVKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390

Query: 156 VNILKKCLAELKTS 169
           V++L+ C+   K +
Sbjct: 391 VSLLQSCIDLFKNN 404

May be involved in several stages of intracellular trafficking. Plays a role in macropinocytosis. Plays a role in the internalization of EGFR after EGF stimulation.

Homo sapiens (taxid: 9606)

>sp|Q80ZJ7|SNX32_MOUSE Sorting nexin-32 OS=Mus musculus GN=Snx32 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 51/69 (73%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           +EV  AE  QQ  C +FE++SD AK+EL DFK RRV +F+KNL+ELAELE+KHA++   +
Sbjct: 333 REVRPAESRQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLL 392

Query: 159 LKKCLAELK 167
           L+  L  LK
Sbjct: 393 LQNTLVALK 401

May be involved in several stages of intracellular trafficking.

Mus musculus (taxid: 10090)

>sp|Q3ZBM5|SNX5_BOVIN Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 56/74 (75%)

Query: 96  VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
           ++ ++V  AE  QQE C KFEQ+S+ AK+EL +FK +RV AF+KNL+E++ELEIKHA + 
Sbjct: 331 LKSRDVKLAEAHQQECCQKFEQLSESAKDELINFKRKRVAAFRKNLIEMSELEIKHARNN 390

Query: 156 VNILKKCLAELKTS 169
           V++L+ C+   K +
Sbjct: 391 VSLLQSCIDLFKNN 404

May be involved in several stages of intracellular trafficking. Plays a role in macropinocytosis. Plays a role in the internalization of EGFR after EGF stimulation.

Bos taurus (taxid: 9913)

>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLL 118

Query: 60  CGNKSDLEG 68
            GNKSDL G
Sbjct: 119 VGNKSDLTG 127

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
323434871	207	Rab7 [Helicoverpa zea]	0.476	0.391	0.876	2e-37
114052701	207	ras-related protein Rab7 [Bombyx mori] g	0.476	0.391	0.864	6e-37
357602866	207	ras-related protein Rab7 [Danaus plexipp	0.476	0.391	0.864	6e-37
307192432	142	Ras-related protein Rab-6.2 [Harpegnatho	0.482	0.577	0.841	4e-36
340723419	207	PREDICTED: GTP-binding protein ypt7-like	0.476	0.391	0.851	2e-35
380017524	207	PREDICTED: GTP-binding protein ypt7-like	0.476	0.391	0.839	3e-35
322786585	211	hypothetical protein SINV_03815 [Solenop	0.476	0.383	0.839	6e-35
289743011	217	GTPase Rab2 [Glossina morsitans morsitan	0.476	0.373	0.839	9e-35
383857745	207	PREDICTED: GTP-binding protein ypt7-like	0.476	0.391	0.851	1e-34
307175180	207	GTP-binding protein ypt7 [Camponotus flo	0.476	0.391	0.827	2e-34

>gi|323434871|gb|ADX66426.1| Rab7 [Helicoverpa zea]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/81 (87%), Positives = 80/81 (98%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMER+AS+TSSYYKFAEAAILVFSLDNA+SFHVLSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHVLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLEG++PQVT+AD+E F
Sbjct: 121 GNKSDLEGSSPQVTDADIETF 141

Source: Helicoverpa zea

Species: Helicoverpa zea

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052701|ref|NP_001040271.1| ras-related protein Rab7 [Bombyx mori] gi|87248579|gb|ABD36342.1| ras-related protein Rab7 [Bombyx mori]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 79/81 (97%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMER+AS+TSSYYKFAEAAILVFSLDNA+SFH+LSQHLLEIV+YAENAKIFLC
Sbjct: 61  LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLEG +PQVT+AD+E F
Sbjct: 121 GNKSDLEGASPQVTDADIETF 141

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602866|gb|EHJ63542.1| ras-related protein Rab7 [Danaus plexippus]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 79/81 (97%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMER+AS+TSSYYK+AEAA+LVFSLDNA+SFHVLSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERIASVTSSYYKYAEAAVLVFSLDNASSFHVLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLEG  PQVT+AD+ENF
Sbjct: 121 GNKSDLEGLCPQVTDADIENF 141

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192432|gb|EFN75648.1| Ras-related protein Rab-6.2 [Harpegnathos saltator]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 77/82 (93%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENFW 82
           GNKSDLE   PQVT+A+ME FW
Sbjct: 121 GNKSDLESIAPQVTDAEMEQFW 142

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723419|ref|XP_003400087.1| PREDICTED: GTP-binding protein ypt7-like [Bombus terrestris] gi|350427736|ref|XP_003494860.1| PREDICTED: GTP-binding protein ypt7-like [Bombus impatiens]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 77/81 (95%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLE T PQVT+A+ME F
Sbjct: 121 GNKSDLESTAPQVTDAEMEQF 141

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017524|ref|XP_003692704.1| PREDICTED: GTP-binding protein ypt7-like [Apis florea]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 78/81 (96%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLE ++PQVT+A+ME F
Sbjct: 121 GNKSDLESSSPQVTDAEMEQF 141

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786585|gb|EFZ12980.1| hypothetical protein SINV_03815 [Solenopsis invicta]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 76/81 (93%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 65  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 124

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLE   PQVT+A+ME F
Sbjct: 125 GNKSDLESVAPQVTDAEMEQF 145

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743011|gb|ADD20253.1| GTPase Rab2 [Glossina morsitans morsitans]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 76/81 (93%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLEG  P+VT+AD+E F
Sbjct: 121 GNKSDLEGREPEVTDADVEAF 141

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857745|ref|XP_003704364.1| PREDICTED: GTP-binding protein ypt7-like [Megachile rotundata]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 76/81 (93%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN +SFH+LSQHLLEIVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNPSSFHLLSQHLLEIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLE T  QVT+A+ME F
Sbjct: 121 GNKSDLESTASQVTDAEMEQF 141

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175180|gb|EFN65273.1| GTP-binding protein ypt7 [Camponotus floridanus]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 75/81 (92%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDTGGMERVAS+TSSYYKFAEAAILVF+LDN+ SFH+LSQHLL+IVTYAENAKIFLC
Sbjct: 61  LQLWDTGGMERVASVTSSYYKFAEAAILVFALDNSTSFHLLSQHLLDIVTYAENAKIFLC 120

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDLE   PQVT+ +ME F
Sbjct: 121 GNKSDLESVAPQVTDVEMEQF 141

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
FB|FBgn0035155	213	RabX6 "RabX6" [Drosophila mela	0.476	0.380	0.790	2e-31
ZFIN|ZDB-GENE-050913-152	407	snx6 "sorting nexin 6" [Danio	0.329	0.137	0.607	1.8e-13
UNIPROTKB|F1MHJ5	388	SNX6 "Uncharacterized protein"	0.323	0.141	0.618	2.1e-13
UNIPROTKB|F1NCY2	404	SNX6 "Uncharacterized protein"	0.323	0.136	0.618	2.3e-13
UNIPROTKB|Q9UNH7	406	SNX6 "Sorting nexin-6" [Homo s	0.323	0.135	0.618	2.3e-13
UNIPROTKB|Q5R613	406	SNX6 "Sorting nexin-6" [Pongo	0.323	0.135	0.618	2.3e-13
MGI|MGI:1919433	406	Snx6 "sorting nexin 6" [Mus mu	0.323	0.135	0.618	2.3e-13
RGD|1304647	406	Snx6 "sorting nexin 6" [Rattus	0.323	0.135	0.618	2.3e-13
UNIPROTKB|F1PFD0	414	SNX6 "Uncharacterized protein"	0.323	0.132	0.618	2.5e-13
UNIPROTKB|E2RAE6	404	SNX5 "Uncharacterized protein"	0.341	0.143	0.551	8.2e-13

FB|FBgn0035155 RabX6 "RabX6" [Drosophila melanogaster (taxid:7227)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 64/81 (79%), Positives = 75/81 (92%)

Query:     1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +QLWDTGGMERVAS+TSSYYKFAE AILVF+LDNAASFH LSQHLL+IVTYAENAKIF+C
Sbjct:    61 LQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFIC 120

Query:    61 GNKSDLEGTTPQVTEADMENF 81
             GNKSDL+G  P+V++ ++E F
Sbjct:   121 GNKSDLDGREPEVSDEEVEAF 141

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

ZFIN|ZDB-GENE-050913-152 snx6 "sorting nexin 6" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK 167
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CL  LK
Sbjct:   349 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLGVLK 404

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|F1MHJ5 SNX6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   330 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 384

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|F1NCY2 SNX6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   346 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVL 400

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9UNH7 SNX6 "Sorting nexin-6" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   348 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=NAS

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IMP;NAS

GO:0031901 "early endosome membrane" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5R613 SNX6 "Sorting nexin-6" [Pongo abelii (taxid:9601)]

 Score = 181 (68.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   348 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0031901 "early endosome membrane" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

MGI|MGI:1919433 Snx6 "sorting nexin 6" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   348 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007154 "cell communication" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031901 "early endosome membrane" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

RGD|1304647 Snx6 "sorting nexin 6" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   348 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402

GO:0005737 "cytoplasm" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007154 "cell communication" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

GO:0031901 "early endosome membrane" evidence=IEA;ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|F1PFD0 SNX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 34/55 (61%), Positives = 45/55 (81%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166
             C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +L+ CLA L
Sbjct:   356 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 410

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|E2RAE6 SNX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query:   112 CDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTS 169
             C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA + V++L+ C+   K +
Sbjct:   347 CQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN 404

GO:0070685 "macropinocytic cup" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0031313 "extrinsic to endosome membrane" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IEA

GO:0006907 "pinocytosis" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
cd07621	219	cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR)	5e-30
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-22
pfam00071	162	pfam00071, Ras, Ras family	6e-19
cd07662	218	cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) d	1e-18
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-18
cd07663	218	cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) d	8e-18
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-14
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-13
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-13
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-13
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-13
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-13
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-12
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-12
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-12
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-12
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-12
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-12
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-12
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-11
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-11
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-11
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-11
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-11
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-10
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-10
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-10
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	9e-10
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-09
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-09
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-09
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-08
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-08
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-08
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-08
cd07630	198	cd07630, BAR_SNX_like, The Bin/Amphiphysin/Rvs (BA	5e-08
cd07596	218	cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) do	5e-08
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	8e-08
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	9e-08
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-07
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-07
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-07
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-07
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-07
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-07
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-06
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-06
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	8e-06
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-05
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-05
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-05
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-05
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-05
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-05
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-05
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-04
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-04
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-04
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-04
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-04
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	0.001
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	0.001
pfam09325	236	pfam09325, Vps5, Vps5 C terminal like	0.001
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	0.002
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.002
cd07623	224	cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR)	0.003
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	0.003

>gnl|CDD|153305 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

 Score =  108 bits (272), Expect = 5e-30
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 100 EVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNIL 159
           +V  AE  QQEAC+KFE MS+ AK+EL DFK RRV AF+KNL+ELAELEIKHA++Q+ +L
Sbjct: 152 DVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLL 211

Query: 160 KKCLAELK 167
           K CLA LK
Sbjct: 212 KNCLAALK 219

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 219

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 87.5 bits (218), Expect = 2e-22
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SITSSYY+ A  AILV+ + N  SF  L + L E+  YA  N  I L
Sbjct: 51  LQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIIL 110

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDLE    QV+  + + F
Sbjct: 111 VGNKSDLEDER-QVSTEEAQQF 131

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 78.3 bits (194), Expect = 6e-19
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  ++   YY+ A+  +LV+ + +  SF  + + L EI+ +A EN  I L
Sbjct: 50  LQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVL 109

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DLE     V+  + E  
Sbjct: 110 VGNKCDLEDQR-VVSTEEGEAL 130

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|153346 cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

 Score = 78.9 bits (194), Expect = 1e-18
 Identities = 39/69 (56%), Positives = 54/69 (78%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           ++V++AE  QQ  C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+  + +
Sbjct: 150 KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 209

Query: 159 LKKCLAELK 167
           L+ CLA L 
Sbjct: 210 LQSCLAVLN 218

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays roles in enhancing the degradation of EGFR and in regulating the activity of Na,K-ATPase through its interaction with Translationally Controlled Tumor Protein (TCTP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 76.8 bits (190), Expect = 2e-18
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SITSSYY+ A  A+LV+ + N  SF  L   L E+  YA  N  I L
Sbjct: 51  LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIML 110

Query: 60  CGNKSDLE 67
            GNKSDLE
Sbjct: 111 VGNKSDLE 118

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|153347 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

 Score = 76.9 bits (189), Expect = 8e-18
 Identities = 37/69 (53%), Positives = 53/69 (76%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
           ++V +AE  QQE C KFE++S+ AK+EL  FK RRV AF+KNL+E+ ELEIKHA++ V++
Sbjct: 150 KDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSL 209

Query: 159 LKKCLAELK 167
           L+ C+   K
Sbjct: 210 LQSCIDLFK 218

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It also binds the Fanconi anaemia complementation group A protein (FANCA). SNX5 is localized to a subdomain of early endosome and is recruited to the plasma membrane following EGF stimulation and elevation of PI(3,4)P2 levels. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 65.4 bits (160), Expect = 5e-14
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 53  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112

Query: 60  CGNKSDLE 67
            GNK DL 
Sbjct: 113 VGNKCDLT 120

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A+LV+ +   ++F  + + L E+  +A+ N  I L 
Sbjct: 55  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLV 114

Query: 61  GNKSDLE 67
           GNKSDL 
Sbjct: 115 GNKSDLR 121

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFL 59
           +Q+WDT G ER  +IT SYY+ A  AI+ + +   +SF  +   + E+  Y A N  + L
Sbjct: 54  LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLL 113

Query: 60  CGNKSDLE 67
            GNK DLE
Sbjct: 114 IGNKCDLE 121

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  SF+ L+  L +  T A  +  I L
Sbjct: 51  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIIL 110

Query: 60  CGNKSDLE 67
            GNK DLE
Sbjct: 111 VGNKKDLE 118

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 63.9 bits (155), Expect = 5e-13
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L
Sbjct: 51  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 110

Query: 60  CGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
            GNK D E T  ++T    E F  + +  RF
Sbjct: 111 VGNKLDCE-TDREITRQQGEKFAQQITGMRF 140

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + +WDT G ER  ++TSSYY+ A+  ILV+ +    +F  L   L E+ TY+   +A   
Sbjct: 51  LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKM 110

Query: 59  LCGNKSDLEG 68
           L GNK D E 
Sbjct: 111 LVGNKIDKEN 120

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
           +QLWDT G ER  S+T+++++ A   +L+F L +  SF    + +SQ  L+   Y EN  
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQ--LQAHAYCENPD 122

Query: 57  IFLCGNKSDLE 67
           I L GNK+DL 
Sbjct: 123 IVLIGNKADLP 133

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           + +WDT G ER  ++   YY+ A+ AILV+ + +A SF  + + + E+      N  + +
Sbjct: 51  LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVI 110

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DLE     V++++ E +
Sbjct: 111 VGNKIDLE-RQRVVSKSEAEEY 131

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 52  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 111

Query: 60  CGNKSDLE 67
            GNK D+E
Sbjct: 112 VGNKCDME 119

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 60.7 bits (147), Expect = 4e-12
 Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L
Sbjct: 58  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITIL 117

Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 118 VGNKIDL 124

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT+SYY+ A   ILV+ + +  SF  +   +  I  +A E+ +  L
Sbjct: 54  LQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERML 113

Query: 60  CGNKSDLE 67
            GNK D+E
Sbjct: 114 VGNKCDME 121

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L
Sbjct: 55  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIML 114

Query: 60  CGNKSDLE 67
            GNK DLE
Sbjct: 115 IGNKCDLE 122

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +QLWDT G ER  S+  SY + +  A++V+ + N  SF    + + ++     N   I L
Sbjct: 51  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVL 110

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK+DL     QV+  + E  
Sbjct: 111 VGNKTDLSDKR-QVSTEEGEKK 131

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 5   DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 62
           DT G E  +++   Y +  +  ILV+S+ +  SF  +     +I  V   E+  I L GN
Sbjct: 53  DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGN 112

Query: 63  KSDLEGTTPQVTEADMENF 81
           K DLE    QV+  + E  
Sbjct: 113 KCDLENER-QVSTEEGEAL 130

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--F 58
           +QLWDT G ER  SIT SYY+ +   +LVF + N  SF  +   L E  ++ +  +    
Sbjct: 54  LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFI 113

Query: 59  LCGNKSDLEGTTPQVTEADMENFWSRRSSRR 89
           L G+K DLE    QVT  + E        + 
Sbjct: 114 LVGHKCDLESQR-QVTREEAEKLAKDLGMKY 143

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T +YY+ A A +L++ + N +SF  +   L EI+ YA  +  I L
Sbjct: 52  LQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIML 111

Query: 60  CGNKSDLEGTTPQVTEADME 79
            GNK+D+ G    V   D E
Sbjct: 112 LGNKADMSGER-VVKREDGE 130

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G ER  +++  YY+ A+AAI+ + L +++SF      + E+    E+ KI+LCG 
Sbjct: 54  IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGT 113

Query: 63  KSDL---EGTTPQVTEADMENFWSRRSSRRFKP------------QEVVEPQEVVEAEQV 107
           KSDL   + +  QV   D+++F     ++ F+             Q+V E        Q+
Sbjct: 114 KSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQM 173

Query: 108 QQEACDKFEQMSDKAK 123
             E      Q  +   
Sbjct: 174 NTEKGVDLGQKKNSYF 189

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 57.2 bits (138), Expect = 9e-11
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  IFL
Sbjct: 53  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 112

Query: 60  CGNKSDLEGT 69
            GNK+DLE  
Sbjct: 113 IGNKADLEAQ 122

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +Q+WDT G ER  +ITS+YY+     I+V+ + N  SF  + + L EI    ++    L 
Sbjct: 57  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV 116

Query: 61  GNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93
           GNK+D +     V   D   F  +     F+  
Sbjct: 117 GNKND-DPERKVVETEDAYKFAGQMGISLFETS 148

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
           +QLWDT G E   S+   YY+ A   ++V+      S   L++  LE +     ++  I 
Sbjct: 56  LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPIL 115

Query: 59  LCGNKSDLEGTTPQVTE 75
           L GNK DL        E
Sbjct: 116 LVGNKIDLFDEQSSSEE 132

Length = 219

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 54.9 bits (132), Expect = 9e-10
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A+LV+ +    +F  + + L E+  +A+ N  I + 
Sbjct: 64  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123

Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 124 GNKSDL 129

Length = 216

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 54.5 bits (132), Expect = 9e-10
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 19/134 (14%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  +L FS+D+ +SF +V ++   EI  Y  N  I L
Sbjct: 50  LGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIIL 109

Query: 60  CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQE-ACDKFEQM 118
            G K DL          D  N       +  K Q+ + P+   E E++ +E    K+ + 
Sbjct: 110 VGTKIDLR---------DDGNT----LKKLEKKQKPITPE---EGEKLAKEIGAVKYMEC 153

Query: 119 SDKAKEELND-FKE 131
           S   +E L + F E
Sbjct: 154 SALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   +A  N  I L
Sbjct: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 116

Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 117 IGNKCDL 123

Length = 210

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 4   WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 62
           WDT G ER  S+   YY+ A AAI+V+ + +  SF      + E+  +   N  I L GN
Sbjct: 55  WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114

Query: 63  KSDLEGTTPQVTEADMENF 81
           K+DLE    QV+  + + +
Sbjct: 115 KADLESKR-QVSTEEAQEY 132

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
           +QLWD  G ER   +T  YYK A  AI+VF +   ++F  +      L   VT      I
Sbjct: 52  LQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI 111

Query: 58  --FLCGNKSDLEGTTPQVTEADMENF 81
              L  NK DL+          M+ F
Sbjct: 112 PALLLANKCDLKKERLAKDPEQMDQF 137

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           +Q+WDT G ER  S+  ++Y+ A+  +LV+ + N  SF  L     E +  A     EN 
Sbjct: 51  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENF 110

Query: 56  KIFLCGNKSDLEGTTPQVTEADMENF 81
              + GNK DLE    QV+    + +
Sbjct: 111 PFVVLGNKIDLEE-KRQVSTKKAQQW 135

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           LWDT G E   +IT +YY+ A+A ILVFS  +  SF  +     ++     +  + L   
Sbjct: 55  LWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQT 114

Query: 63  KSDL 66
           K DL
Sbjct: 115 KIDL 118

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIF 58
           +QLWDT G ER   I S+YY+ A+A I+VF L + AS     Q L + +   +  +  +F
Sbjct: 51  LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110

Query: 59  LCGNKSDL 66
           L G K DL
Sbjct: 111 LVGTKKDL 118

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1   MQLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENA 55
           +++ DT G ++           ++A+  +LV+S+ + +SF V+S   Q + EI       
Sbjct: 49  LEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEI 108

Query: 56  KIFLCGNKSDLEGTTPQVTEAD 77
            + L GNK+DL  +  QV+  +
Sbjct: 109 PVILVGNKADLLHSR-QVSTEE 129

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|153314 cd07630, BAR_SNX_like, The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 26/73 (35%), Positives = 44/73 (60%)

Query: 91  KPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIK 150
           K  E  +PQ+  +AE+ +++A  +FE++S  AK+EL  F  +RV   +  L+  AE +IK
Sbjct: 124 KALEKAKPQKKEQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIK 183

Query: 151 HAESQVNILKKCL 163
           +A+    +L K L
Sbjct: 184 NAKEAAAVLTKTL 196

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 198

>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 100 EVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNIL 159
           E+ EAE   +EA  ++E++S++ KEEL  F E R    K  L E A L++++AE      
Sbjct: 153 ELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAW 212

Query: 160 KKCLAE 165
           +  L E
Sbjct: 213 ESLLPE 218

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
            WDT G ER  ++ +SYY  A A ILVF +    ++  LS+   E+  Y       +  N
Sbjct: 53  FWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVAN 112

Query: 63  KSDLEGTTPQVTE 75
           K DL+   P VT+
Sbjct: 113 KIDLD---PSVTQ 122

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 48.7 bits (116), Expect = 9e-08
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIF 58
           +Q+WDT G ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA+    + F
Sbjct: 56  LQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 115

Query: 59  ---LCGNKSDLEGTTPQVTEA 76
              + GNK D+        EA
Sbjct: 116 PFVILGNKIDIPERQVSTEEA 136

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YA-ENA 55
           +Q+WDT G ER  +IT  YY+ A+   LV+ + +  S+    QH+++ V+    YA E  
Sbjct: 51  IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY----QHIMKWVSDVDEYAPEGV 106

Query: 56  KIFLCGNKSDLE 67
           +  L GNK+D E
Sbjct: 107 QKILIGNKADEE 118

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 1   MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-- 57
           +QLWDT G ER   S+   YY+   A + V+ + N ASFH L   + E   ++   ++  
Sbjct: 53  VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR 112

Query: 58  FLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92
            L GNK DL     QV     + F    S   F+ 
Sbjct: 113 ILVGNKCDLREQI-QVPTDLAQRFADAHSMPLFET 146

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 2   QLWDTGGMERV-----ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 56
            L DT G++         +     + A+  +LV    +  S       +L  +   E   
Sbjct: 50  VLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRL-RKEGIP 108

Query: 57  IFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE 97
           I L GNK DL      + E ++E         +     V E
Sbjct: 109 IILVGNKIDL------LEEREVEELLRLEELAKILGVPVFE 143

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +QLWDT G  R  +I  SY + A+  ILV+ + N  SF  + + + EI  +A      L 
Sbjct: 57  LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILV 116

Query: 61  GNKSDLEGTTPQVTEADMENFWSR 84
           GN+  L     QV     + +  R
Sbjct: 117 GNRLHL-AFKRQVATEQAQAYAER 139

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 1  MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
          +QLWDT G ER  S+  SY + + AAI+V+ + N  SF   ++ + +I+    ++  I L
Sbjct: 31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 90

Query: 60 CGNKSDL 66
           GNK+DL
Sbjct: 91 VGNKTDL 97

Length = 176

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS------QHLLEIVTYAE-N 54
            L DT G E   +I   YY+  E+++ VF +       VL       +   EI+ +AE  
Sbjct: 54  NLLDTAGQEDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESG 109

Query: 55  AKIFLCGNKSDLEG 68
             I L GNK DL  
Sbjct: 110 VPIILVGNKIDLRD 123

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 4   WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY------AENAKI 57
           +D  G      + + +YK  +  +LV+ + +  SF  L   L E+          EN  +
Sbjct: 54  FDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVV 113

Query: 58  FLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91
            +C NK DL  T  +    D    W+   S+ FK
Sbjct: 114 VVCANKIDL--TKHRAVSEDEGRLWA--ESKGFK 143

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 61
           LWDT G E    +    Y+ A+  +L FSL + AS+ +VL + + E+  YA    I L G
Sbjct: 53  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVG 112

Query: 62  NKSDL 66
            K DL
Sbjct: 113 TKLDL 117

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKI-- 57
           + +WDT G ER  ++TSSYY+ A+  ILV+ +    +F  LS     E+  Y+ N     
Sbjct: 64  LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK 123

Query: 58  FLCGNKSDLE 67
            L GNK D E
Sbjct: 124 MLVGNKVDRE 133

Length = 211

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY   + AI++F +    ++  +     ++V   EN  I LCGN
Sbjct: 48  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGN 107

Query: 63  KSDLE 67
           K D++
Sbjct: 108 KVDVK 112

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCG 61
           +WDT G E+   + S Y + A A IL + + N  S   L    L +   A    +F + G
Sbjct: 48  IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107

Query: 62  NKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVV 102
           NK DL  T         ++   R S      Q  V  ++  
Sbjct: 108 NKLDL--TEEGALAGQEKDAGDRVSPE---DQRQVTLEDAK 143

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 5   DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 62
           DT G E  A+I  +Y++  E  +LVFS+ +  SF  L++   +I  V   +N  + L GN
Sbjct: 54  DTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGN 113

Query: 63  KSDLEGTTPQVTEADMENF 81
           K DLE    QV+  +  N 
Sbjct: 114 KCDLEDKR-QVSVEEAANL 131

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 4   WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK 63
           WDT G E+   +   YY   + AI++F + +  ++  +     +IV   EN  I L GNK
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNK 122

Query: 64  SD 65
            D
Sbjct: 123 VD 124

Length = 215

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           +++ DT G E+ AS+   Y K  +  I+V+SL N  +F  +     +I  V   E   I 
Sbjct: 51  LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 59  LCGNKSDLE 67
           L GNK DLE
Sbjct: 111 LVGNKVDLE 119

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKI 57
           + + DT G E  +++   Y +  E  +LV+S+ +  SF       + +L +    ++  I
Sbjct: 52  LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDR-DDVPI 110

Query: 58  FLCGNKSDLE 67
            L GNK DLE
Sbjct: 111 VLVGNKCDLE 120

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 2   QLWDTGGME---RVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKI 57
            LWDT G E   R+  +  SY    +  ++ FS+D+ ASF +V  +   E+  +  N  I
Sbjct: 49  GLWDTAGQEDYDRLRPL--SYPD-TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPI 105

Query: 58  FLCGNKSDL 66
            L G K DL
Sbjct: 106 ILVGTKLDL 114

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 4   WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK 63
           WDT G E+   +   YY   + AI++F + +  ++  +     ++V   EN  I LCGNK
Sbjct: 54  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK 113

Query: 64  SD 65
            D
Sbjct: 114 VD 115

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    + S  Y      +L FS+DN  S  +V S+ L EI  +    K+ L
Sbjct: 50  LSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVL 109

Query: 60  CGNKSDLEG 68
              K DL  
Sbjct: 110 VALKCDLRE 118

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFL 59
           +QL DT G +    +    Y   +  +L FS+ N +SF  +S+  + EI  +   A I L
Sbjct: 50  LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIIL 109

Query: 60  CGNKSDL 66
            G ++DL
Sbjct: 110 VGTQADL 116

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
           + + DT G E  +++   Y +  E  +LV+S+ +  SF  +    + +L +    ++  I
Sbjct: 50  LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPI 108

Query: 58  FLCGNKSDLE 67
            L GNK DLE
Sbjct: 109 VLVGNKCDLE 118

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
           +WD GG E + S  ++YY   +A ILV    +     +  + L +++ + +   A + + 
Sbjct: 63  MWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122

Query: 61  GNKSDLEG--TTPQVTEA 76
            NK DL+G  T  +++E+
Sbjct: 123 ANKQDLKGAMTPAEISES 140

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV---TYAENAKIFL 59
           +WD GG E +      + K+A+A +LV+ L +  S + +S+ +  +           + L
Sbjct: 52  IWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVIL 111

Query: 60  CGNK 63
            GNK
Sbjct: 112 VGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 5   DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 62
           DT G E  +++   Y +  E  + VF++++  SF  +  +  +I  V  +++  + L GN
Sbjct: 55  DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGN 114

Query: 63  KSDLEGTT 70
           K DL   T
Sbjct: 115 KCDLAART 122

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 4   WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK 63
           WDT G E+   +   YY   + AI++F +    ++  +     ++    EN  I LCGNK
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126

Query: 64  SDL 66
            D+
Sbjct: 127 VDV 129

Length = 219

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 27  ILVFSLDNAASFH---VLSQHLLEIVTYA-----ENAKI--FLCGNKSDL-EGTTPQVTE 75
           ILVFSLDN  SF     L + +LE  +       EN KI   +CGNK+D       Q  E
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 76  AD 77
            +
Sbjct: 136 VE 137

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
           +++ DT G E+  ++   Y K  +  +LV+S+ + AS + L +   +++    ++N  + 
Sbjct: 51  LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV 110

Query: 59  LCGNKSDLE 67
           L GNK+DLE
Sbjct: 111 LVGNKADLE 119

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|220180 pfam09325, Vps5, Vps5 C terminal like

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAE 153
           +EV EAE+  Q+A  +FE +S+  K+EL  F+  RV+ FK  L    E  I+  +
Sbjct: 170 KEVDEAERKVQQAKKEFEDISETIKKELERFETERVDDFKNVLEIYLESAIESQK 224

Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain. Length = 236

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           +++ DT G E+  ++   Y K  +   LV+S+    SF+ L     +I  V   E+  + 
Sbjct: 51  LEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMI 110

Query: 59  LCGNKSDLE 67
           L GNK DLE
Sbjct: 111 LVGNKCDLE 119

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA----K 56
           +Q+WD GG +    +   Y   A+A  LV+ + N+ SF  L   L  +    E +    K
Sbjct: 52  LQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPK 111

Query: 57  IFLCGNKSDLE 67
           + L GNK+DLE
Sbjct: 112 MVLVGNKTDLE 122

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|153307 cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKH 151
           QE+ E E        +FE++S   K+E+  F++ RV+ FK  +++  E  +  
Sbjct: 156 QEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNT 208

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 224

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + ++D    E    +  S  +  +A ++V+S+ + +SF   S+  +++     AE+  I 
Sbjct: 51  LVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPII 110

Query: 59  LCGNKSDL 66
           L GNKSDL
Sbjct: 111 LVGNKSDL 118

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG0084|consensus	205		100.0
KOG0078|consensus	207		99.98
KOG0098|consensus	216		99.97
KOG0092|consensus	200		99.97
KOG0093|consensus	193		99.97
KOG0087|consensus	222		99.96
KOG0091|consensus	213		99.96
KOG0094|consensus	221		99.96
KOG0081|consensus	219		99.96
KOG0080|consensus	209		99.96
KOG0083|consensus	192		99.96
KOG0079|consensus	198		99.96
KOG0086|consensus	214		99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
KOG0394|consensus	210		99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
KOG0088|consensus	218		99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
PTZ00099	176	rab6; Provisional	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.93
KOG0095|consensus	213		99.93
KOG0097|consensus	215		99.93
KOG0393|consensus	198		99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.92
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.92
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.91
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.91
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.91
KOG0395|consensus	196		99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.9
PTZ00369	189	Ras-like protein; Provisional	99.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.9
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.9
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.9
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.9
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.9
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.9
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.9
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.9
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.89
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.89
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.89
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.88
PLN03110	216	Rab GTPase; Provisional	99.88
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
PLN03108	210	Rab family protein; Provisional	99.88
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.88
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.88
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.88
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.88
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.88
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.87
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.87
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.87
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.87
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.87
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.86
PLN00223	181	ADP-ribosylation factor; Provisional	99.86
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.86
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.86
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.86
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.86
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.86
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.86
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.86
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.86
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.85
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.85
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.85
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.85
PLN03118	211	Rab family protein; Provisional	99.85
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.85
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.84
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.84
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.84
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.84
PTZ00133	182	ADP-ribosylation factor; Provisional	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.83
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.82
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.82
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.82
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.81
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.81
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.8
PLN00023	334	GTP-binding protein; Provisional	99.8
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.8
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.79
KOG4252|consensus	246		99.79
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.78
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.78
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.78
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.77
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.77
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.76
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.76
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.75
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.75
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.74
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.73
KOG4423|consensus	229		99.72
KOG0070|consensus	181		99.72
KOG0073|consensus	185		99.66
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.66
COG1100	219	GTPase SAR1 and related small G proteins [General	99.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.64
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.63
KOG0075|consensus	186		99.62
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.61
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.6
KOG3883|consensus	198		99.59
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.58
KOG0076|consensus	197		99.58
KOG1673|consensus	205		99.56
PRK12299	335	obgE GTPase CgtA; Reviewed	99.55
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.55
KOG0071|consensus	180		99.54
KOG0096|consensus	216		99.53
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.52
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.51
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.51
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.51
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.49
PRK04213	201	GTP-binding protein; Provisional	99.48
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.47
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.47
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.44
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.43
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.42
KOG0074|consensus	185		99.42
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.42
PRK03003	472	GTP-binding protein Der; Reviewed	99.42
COG2229	187	Predicted GTPase [General function prediction only	99.42
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.4
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.4
KOG1660|consensus	399		99.4
PRK05433	600	GTP-binding protein LepA; Provisional	99.38
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.38
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.38
cd00881	189	GTP_translation_factor GTP translation factor fami	99.37
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.36
KOG0072|consensus	182		99.36
PRK03003	472	GTP-binding protein Der; Reviewed	99.35
CHL00189	742	infB translation initiation factor 2; Provisional	99.35
PRK12297	424	obgE GTPase CgtA; Reviewed	99.35
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.35
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.34
PRK05306	787	infB translation initiation factor IF-2; Validated	99.33
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.31
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.31
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.31
KOG1707|consensus	625		99.3
PRK15494	339	era GTPase Era; Provisional	99.3
PRK11058	426	GTPase HflX; Provisional	99.29
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.29
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.27
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.26
PRK12317	425	elongation factor 1-alpha; Reviewed	99.25
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.25
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.24
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.24
PRK04004	586	translation initiation factor IF-2; Validated	99.23
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.21
PRK00093	435	GTP-binding protein Der; Reviewed	99.19
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.17
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.17
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.17
PRK14845	1049	translation initiation factor IF-2; Provisional	99.15
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.12
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.12
PRK12298	390	obgE GTPase CgtA; Reviewed	99.11
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.1
PRK00089	292	era GTPase Era; Reviewed	99.1
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.1
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.07
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.07
PRK12296	500	obgE GTPase CgtA; Reviewed	99.06
PRK00093	435	GTP-binding protein Der; Reviewed	99.06
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.06
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.04
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.04
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.03
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	99.03
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	99.01
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.99
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.99
PLN00043	447	elongation factor 1-alpha; Provisional	98.97
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	98.96
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.95
PRK10218	607	GTP-binding protein; Provisional	98.94
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.94
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.89
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.89
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.87
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.86
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.85
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.85
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.85
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.84
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.75
PRK12736	394	elongation factor Tu; Reviewed	98.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.71
KOG0077|consensus	193		98.69
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.66
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.66
PRK13351	687	elongation factor G; Reviewed	98.66
PRK12289	352	GTPase RsgA; Reviewed	98.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.65
KOG1145|consensus	683		98.65
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.64
PRK12735	396	elongation factor Tu; Reviewed	98.64
PRK00098	298	GTPase RsgA; Reviewed	98.64
KOG0462|consensus	650		98.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.63
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.62
PRK13768	253	GTPase; Provisional	98.62
PRK12288	347	GTPase RsgA; Reviewed	98.59
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.58
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.56
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.54
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.52
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.52
PRK09866	741	hypothetical protein; Provisional	98.49
PTZ00141	446	elongation factor 1- alpha; Provisional	98.46
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.44
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.41
KOG1489|consensus	366		98.41
PLN03126	478	Elongation factor Tu; Provisional	98.4
CHL00071	409	tufA elongation factor Tu	98.38
COG1159	298	Era GTPase [General function prediction only]	98.38
PRK12740	668	elongation factor G; Reviewed	98.35
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.28
KOG1144|consensus	1064		98.27
PRK00049	396	elongation factor Tu; Reviewed	98.26
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.25
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.24
COG1160	444	Predicted GTPases [General function prediction onl	98.19
PRK12739	691	elongation factor G; Reviewed	98.18
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.18
COG0486	454	ThdF Predicted GTPase [General function prediction	98.17
PRK13796	365	GTPase YqeH; Provisional	98.11
KOG1532|consensus	366		98.03
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.02
cd07630	198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	98.01
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.01
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.96
PLN03127	447	Elongation factor Tu; Provisional	97.96
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.94
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.94
KOG3886|consensus	295		97.94
COG1160	444	Predicted GTPases [General function prediction onl	97.93
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.89
COG0536	369	Obg Predicted GTPase [General function prediction	97.87
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.81
KOG0082|consensus	354		97.8
PRK00007	693	elongation factor G; Reviewed	97.79
COG1084	346	Predicted GTPase [General function prediction only	97.78
KOG0090|consensus	238		97.74
COG2262	411	HflX GTPases [General function prediction only]	97.71
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.65
PRK07560	731	elongation factor EF-2; Reviewed	97.64
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.64
KOG1707|consensus	625		97.61
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.58
KOG1423|consensus	379		97.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.53
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.53
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.51
KOG0468|consensus	971		97.51
PTZ00416	836	elongation factor 2; Provisional	97.5
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.48
KOG0705|consensus	749		97.47
PRK09602	396	translation-associated GTPase; Reviewed	97.46
COG0218	200	Predicted GTPase [General function prediction only	97.41
PRK01889	356	GTPase RsgA; Reviewed	97.39
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.39
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.37
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.31
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.3
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.26
COG1163	365	DRG Predicted GTPase [General function prediction	97.18
KOG1490|consensus	620		97.12
KOG0458|consensus	603		97.09
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.05
cd03110	179	Fer4_NifH_child This protein family's function is	97.02
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.91
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.91
KOG0099|consensus	379		96.73
COG1162	301	Predicted GTPases [General function prediction onl	96.68
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.66
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.65
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	96.63
KOG3905|consensus	473		96.52
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.4
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.4
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.29
KOG1954|consensus	532		96.05
KOG3887|consensus	347		95.86
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	95.83
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	95.54
COG3596	296	Predicted GTPase [General function prediction only	95.51
KOG1191|consensus	531		95.37
KOG0460|consensus	449		95.28
COG1161	322	Predicted GTPases [General function prediction onl	95.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	95.17
KOG1143|consensus	591		95.14
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	95.06
KOG0467|consensus	887		94.72
KOG0465|consensus	721		94.65
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	94.34
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	94.11
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	93.82
COG1149	284	MinD superfamily P-loop ATPase containing an inser	93.57
KOG0461|consensus	522		93.52
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	93.25
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	93.06
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	92.42
KOG4273|consensus	418		92.3
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	92.21
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	91.9
cd02036	179	MinD Bacterial cell division requires the formatio	91.88
KOG0085|consensus	359		91.69
KOG0459|consensus	501		91.65
PHA02518	211	ParA-like protein; Provisional	91.57
KOG0469|consensus	842		91.51
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	91.4
KOG1424|consensus	562		91.15
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	90.81
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	90.62
PTZ00258	390	GTP-binding protein; Provisional	90.56
KOG0464|consensus	753		90.55
KOG0447|consensus	980		90.54
KOG2484|consensus	435		90.33
cd03111	106	CpaE_like This protein family consists of proteins	90.21
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	89.81
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	89.65
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	89.21
KOG2423|consensus	572		88.08
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	87.97
cd02117	212	NifH_like This family contains the NifH (iron prot	87.31
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	85.39
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	83.69
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	82.88
KOG0466|consensus	466		81.92
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	81.81
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	81.61
TIGR00064	272	ftsY signal recognition particle-docking protein F	81.58
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	81.5

>KOG0084|consensus

Probab=100.00  E-value=8.8e-34  Score=208.42  Aligned_cols=103  Identities=34%  Similarity=0.541  Sum_probs=100.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ||||||+|||+|+++..+|||+|||+|+|||+|+.+||+++..|+.++.++. +++|.+|||||||+.+ .+.|+.++++
T Consensus        60 lQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~  138 (205)
T KOG0084|consen   60 LQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQ  138 (205)
T ss_pred             EEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHH
Confidence            6899999999999999999999999999999999999999999999999999 7889999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .|+.+++++.|+|+|||++.||+++
T Consensus       139 ~fa~~~~~~~f~ETSAK~~~NVe~~  163 (205)
T KOG0084|consen  139 EFADELGIPIFLETSAKDSTNVEDA  163 (205)
T ss_pred             HHHHhcCCcceeecccCCccCHHHH
Confidence            9999999998999999999999987

>KOG0078|consensus

Probab=99.98  E-value=3.1e-32  Score=202.48  Aligned_cols=111  Identities=31%  Similarity=0.440  Sum_probs=102.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +|+|||+||++|..+...||++|+|+++|||+|+..||+++..|+..|.++. +++|++|||||+|+.+ .|+|+.+.++
T Consensus        63 lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge  141 (207)
T KOG0078|consen   63 LQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGE  141 (207)
T ss_pred             EEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHH
Confidence            5899999999999999999999999999999999999999999999999998 6999999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKF  115 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~  115 (170)
                      ++|.++|++ |+|+||++|.||+++  |..++.+..
T Consensus       142 ~lA~e~G~~-F~EtSAk~~~NI~ea--F~~La~~i~  174 (207)
T KOG0078|consen  142 ALAREYGIK-FFETSAKTNFNIEEA--FLSLARDIL  174 (207)
T ss_pred             HHHHHhCCe-EEEccccCCCCHHHH--HHHHHHHHH
Confidence            999999995 778999999999988  444444444

>KOG0098|consensus

Probab=99.97  E-value=4.9e-31  Score=192.36  Aligned_cols=102  Identities=36%  Similarity=0.536  Sum_probs=98.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||+|||.|.++...||++|.|+|||||+++++||..+..|+.+++++. +|..++|+|||+||.. .|.|+.+|++
T Consensus        57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGe  135 (216)
T KOG0098|consen   57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGE  135 (216)
T ss_pred             EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHH
Confidence            6899999999999999999999999999999999999999999999999997 9999999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .||+++|.+ |+++||++++||+|+
T Consensus       136 aFA~ehgLi-fmETSakt~~~VEEa  159 (216)
T KOG0098|consen  136 AFAREHGLI-FMETSAKTAENVEEA  159 (216)
T ss_pred             HHHHHcCce-eehhhhhhhhhHHHH
Confidence            999999986 559999999999999

>KOG0092|consensus

Probab=99.97  E-value=2e-30  Score=190.11  Aligned_cols=102  Identities=29%  Similarity=0.435  Sum_probs=96.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||+|||+|.++.++|||+|+++|+|||+|+.+||..+++|+.++.+.. +++-+.|||||+||.+ .|.|..+++.
T Consensus        56 feIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~  134 (200)
T KOG0092|consen   56 FEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQ  134 (200)
T ss_pred             EEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHH
Confidence            5799999999999999999999999999999999999999999999998887 7788889999999999 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+|.+.|.+ |+|+|||++.||.+.
T Consensus       135 ~yAe~~gll-~~ETSAKTg~Nv~~i  158 (200)
T KOG0092|consen  135 AYAESQGLL-FFETSAKTGENVNEI  158 (200)
T ss_pred             HHHHhcCCE-EEEEecccccCHHHH
Confidence            999999985 778999999999964

>KOG0093|consensus

Probab=99.97  E-value=2.3e-30  Score=182.50  Aligned_cols=102  Identities=29%  Similarity=0.526  Sum_probs=98.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +|||||+|||+|+.+...||++++|+|+|||+|+.+||..++.|.-.|..++ .++|+||||||||+.+ +|.|+.+.++
T Consensus        72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~  150 (193)
T KOG0093|consen   72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGR  150 (193)
T ss_pred             EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHH
Confidence            6899999999999999999999999999999999999999999999999988 8999999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++.++|+. |+|+|||.+.||..+
T Consensus       151 ~l~~~LGfe-fFEtSaK~NinVk~~  174 (193)
T KOG0093|consen  151 QLADQLGFE-FFETSAKENINVKQV  174 (193)
T ss_pred             HHHHHhChH-HhhhcccccccHHHH
Confidence            999999995 668999999999977

>KOG0087|consensus

Probab=99.96  E-value=7.7e-30  Score=189.41  Aligned_cols=119  Identities=31%  Similarity=0.475  Sum_probs=107.8

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |||||+|||+|+.+...||++|.|+++|||+|.+.||+++.+|+.+++.+. ++++++|||||+||.+ .|.|+.+++..
T Consensus        66 qIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~  144 (222)
T KOG0087|consen   66 QIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKA  144 (222)
T ss_pred             eeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHh
Confidence            799999999999999999999999999999999999999999999999999 8999999999999999 99999999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHHHhhHHHHH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKE  124 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  124 (170)
                      +|...+. +|+++||.++.||+.+  |...+-+++..++++...
T Consensus       145 ~Ae~~~l-~f~EtSAl~~tNVe~a--F~~~l~~I~~~vs~k~~~  185 (222)
T KOG0087|consen  145 FAEKEGL-FFLETSALDATNVEKA--FERVLTEIYKIVSKKQLD  185 (222)
T ss_pred             HHHhcCc-eEEEecccccccHHHH--HHHHHHHHHHHHHHHhhh
Confidence            9998887 6889999999999999  455555565555555443

>KOG0091|consensus

Probab=99.96  E-value=1.6e-29  Score=180.99  Aligned_cols=113  Identities=32%  Similarity=0.467  Sum_probs=100.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--C-CCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--E-NAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~-~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ||+|||+|||+|+++.++||+++-|+++|||+||+.||+.+..|+.+...+.  | .+.+.|||+|+||.. .|+|+.+|
T Consensus        60 lqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EE  138 (213)
T KOG0091|consen   60 LQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEE  138 (213)
T ss_pred             EEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHH
Confidence            6899999999999999999999999999999999999999999999987666  4 445679999999999 99999999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhHHHH-HHHHHHHH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEAEQV-QQEACDKF  115 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~~-~~~~~~~~  115 (170)
                      ++.+|+.+|+ .|+|+||++|.||+++|.+ .+.++..+
T Consensus       139 aEklAa~hgM-~FVETSak~g~NVeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  139 AEKLAASHGM-AFVETSAKNGCNVEEAFDMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHhcCc-eEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999 6889999999999999544 44444444

>KOG0094|consensus

Probab=99.96  E-value=2.6e-29  Score=184.63  Aligned_cols=102  Identities=28%  Similarity=0.453  Sum_probs=97.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ||+|||+|||+|+++.+.|++++.++|+|||++|..||+++..|++.++...  .++-++|||||.||.+ .|+++.+|+
T Consensus        73 LQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg  151 (221)
T KOG0094|consen   73 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEG  151 (221)
T ss_pred             EEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHH
Confidence            6899999999999999999999999999999999999999999999999887  3588899999999999 999999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...|++++. .|+++||+.|.||.+.
T Consensus       152 ~~kAkel~a-~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen  152 ERKAKELNA-EFIETSAKAGENVKQL  176 (221)
T ss_pred             HHHHHHhCc-EEEEecccCCCCHHHH
Confidence            999999999 7889999999999955

>KOG0081|consensus

Probab=99.96  E-value=4.7e-29  Score=178.03  Aligned_cols=120  Identities=32%  Similarity=0.493  Sum_probs=106.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ||+|||+|||+|+++...++++|-|++++||+|+.+||-++++|+.++..+.  .++-+|++|||+|+.+ .|+|+.+++
T Consensus        69 LQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa  147 (219)
T KOG0081|consen   69 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQA  147 (219)
T ss_pred             EeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHH
Confidence            6899999999999999999999999999999999999999999999987655  8888999999999999 999999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH-HHHHHHHHHHHHHhhHHH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA-EQVQQEACDKFEQMSDKA  122 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~-~~~~~~~~~~~~~~~~~~  122 (170)
                      .++|..+|+| |+|+||-+|.||+++ +-+...+.+.+++..++.
T Consensus       148 ~~La~kyglP-YfETSA~tg~Nv~kave~LldlvM~Rie~~v~~s  191 (219)
T KOG0081|consen  148 AALADKYGLP-YFETSACTGTNVEKAVELLLDLVMKRIEQCVEKS  191 (219)
T ss_pred             HHHHHHhCCC-eeeeccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999998 558999999999998 545556666665555443

>KOG0080|consensus

Probab=99.96  E-value=3.3e-29  Score=179.00  Aligned_cols=102  Identities=28%  Similarity=0.427  Sum_probs=97.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |.||||+|||+|+.+.++||++|.|+|+|||+|.++||..+..|+.++..|+  +++..++||||+|... .|.|+.+|+
T Consensus        62 laiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG  140 (209)
T KOG0080|consen   62 LAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEG  140 (209)
T ss_pred             EEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHH
Confidence            4699999999999999999999999999999999999999999999999998  7888899999999988 899999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..||+.+++ .|+||||++.+||+.+
T Consensus       141 ~kfAr~h~~-LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen  141 LKFARKHRC-LFIECSAKTRENVQCC  165 (209)
T ss_pred             HHHHHhhCc-EEEEcchhhhccHHHH
Confidence            999999998 5889999999999966

>KOG0083|consensus

Probab=99.96  E-value=2.9e-29  Score=174.58  Aligned_cols=102  Identities=35%  Similarity=0.494  Sum_probs=98.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ||+|||+|||+|++....||+.+|+.+++||++++.||++++.|+.+|.++. ..+.+.++|||||+.. +|.|..++++
T Consensus        49 lqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~  127 (192)
T KOG0083|consen   49 LQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGE  127 (192)
T ss_pred             EEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHH
Confidence            5899999999999999999999999999999999999999999999999998 7889999999999988 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+|+.+++| |+|+||++|-||+.+
T Consensus       128 kla~~y~ip-fmetsaktg~nvd~a  151 (192)
T KOG0083|consen  128 KLAEAYGIP-FMETSAKTGFNVDLA  151 (192)
T ss_pred             HHHHHHCCC-ceeccccccccHhHH
Confidence            999999997 779999999999977

>KOG0079|consensus

Probab=99.96  E-value=7.9e-29  Score=174.91  Aligned_cols=104  Identities=29%  Similarity=0.425  Sum_probs=99.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |+||||+|||+|+.+...||++.+|+++|||+|+.+||.+++.|++++.+.++.+|-||||||+|.++ .+.|..++++.
T Consensus        59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-RrvV~t~dAr~  137 (198)
T KOG0079|consen   59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-RRVVDTEDARA  137 (198)
T ss_pred             EEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-ceeeehHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEAEQ  106 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~~~  106 (170)
                      ||...|+. ++|+|||.++|+++.|.
T Consensus       138 ~A~~mgie-~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen  138 FALQMGIE-LFETSAKENENVEAMFH  162 (198)
T ss_pred             HHHhcCch-heehhhhhcccchHHHH
Confidence            99999996 55899999999997743

>KOG0086|consensus

Probab=99.96  E-value=1.3e-28  Score=174.79  Aligned_cols=112  Identities=34%  Similarity=0.522  Sum_probs=103.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ||||||+|||+|++..+.||++|-|.++|||+|+++||+.+.+|+..++... +++.+||+|||.||.. .|+|+..++.
T Consensus        60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs  138 (214)
T KOG0086|consen   60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEAS  138 (214)
T ss_pred             EEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHH
Confidence            6899999999999999999999999999999999999999999999998877 8999999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFE  116 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~  116 (170)
                      +||++..+ .|.|+||.+|+||+|+  |.+.+..++.
T Consensus       139 ~FaqEnel-~flETSa~TGeNVEEa--Fl~c~~tIl~  172 (214)
T KOG0086|consen  139 RFAQENEL-MFLETSALTGENVEEA--FLKCARTILN  172 (214)
T ss_pred             hhhcccce-eeeeecccccccHHHH--HHHHHHHHHH
Confidence            99999998 7889999999999999  4544444443

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=4.4e-28  Score=180.89  Aligned_cols=105  Identities=20%  Similarity=0.345  Sum_probs=96.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|++.|..+++.||+++|++|+|||++++.||+.+ ..|++.+....+++|++|||||+|+.++          
T Consensus        55 l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~  134 (182)
T cd04172          55 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNH  134 (182)
T ss_pred             EEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhc
Confidence            57999999999999999999999999999999999999997 7999999988889999999999999641          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~  105 (170)
                       .++|+.++++++|+++++..|+||||++|.| |.++|
T Consensus       135 ~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F  172 (182)
T cd04172         135 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF  172 (182)
T ss_pred             CCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHH
Confidence             3579999999999999987788999999998 99874

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0394|consensus

Probab=99.95  E-value=3.4e-28  Score=177.18  Aligned_cols=105  Identities=30%  Similarity=0.500  Sum_probs=97.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCC-CCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEG-TTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~-~~~~v~   74 (170)
                      ||||||+|||+|.++.-.+||+||++++|||++++.||+++.+|..++..+.     ...|+||+|||+|+.+ ..|+|+
T Consensus        60 lQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS  139 (210)
T KOG0394|consen   60 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS  139 (210)
T ss_pred             EEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee
Confidence            5899999999999999999999999999999999999999999999988776     3689999999999976 249999


Q ss_pred             HHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         75 EADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ...++.||++.|-..|+|+|||+..||.++|
T Consensus       140 ~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AF  170 (210)
T KOG0394|consen  140 EKKAQTWCKSKGNIPYFETSAKEATNVDEAF  170 (210)
T ss_pred             HHHHHHHHHhcCCceeEEecccccccHHHHH
Confidence            9999999999988788899999999999773

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=1.4e-27  Score=177.36  Aligned_cols=104  Identities=28%  Similarity=0.387  Sum_probs=96.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      |+||||+|+++|..+++.|++++|++|+|||+++++||+.+ ..|+.++....+++|++|||||+|+.+ .         
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~  129 (176)
T cd04133          51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD-DKQYLADHPG  129 (176)
T ss_pred             EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc-ChhhhhhccC
Confidence            57999999999999999999999999999999999999998 689999988778899999999999965 3         


Q ss_pred             -CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         71 -PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        71 -~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       +.|+.+++.++++..++..|+||||++|.||+++|
T Consensus       130 ~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F  165 (176)
T cd04133         130 ASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF  165 (176)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHH
Confidence             35999999999999998778899999999999873

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=2.4e-27  Score=177.90  Aligned_cols=102  Identities=28%  Similarity=0.389  Sum_probs=96.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |+||||+|+++|..+++.|++++|++|+|||++++.||+.+..|++++..+.+++|+||||||+|+.+ .+.|+.++++.
T Consensus        57 l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~-~~~v~~~~~~~  135 (189)
T cd04121          57 LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF-KRQVATEQAQA  135 (189)
T ss_pred             EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh-ccCCCHHHHHH
Confidence            57999999999999999999999999999999999999999999999988778999999999999988 78999999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++ .|++|||++|.||+++
T Consensus       136 ~a~~~~~-~~~e~SAk~g~~V~~~  158 (189)
T cd04121         136 YAERNGM-TFFEVSPLCNFNITES  158 (189)
T ss_pred             HHHHcCC-EEEEecCCCCCCHHHH
Confidence            9999987 4779999999999987

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0088|consensus

Probab=99.95  E-value=5.2e-28  Score=172.59  Aligned_cols=103  Identities=26%  Similarity=0.486  Sum_probs=97.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |.||||+|||+|..+.+.||++++|+++|||+||++||+.+++|..+++... ..+.+++||||+||.. .|.|+..++.
T Consensus        64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe  142 (218)
T KOG0088|consen   64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAE  142 (218)
T ss_pred             eeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHH
Confidence            5799999999999999999999999999999999999999999999999887 6788999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+|...|+. |+++||+.+.||.+.|
T Consensus       143 ~YAesvGA~-y~eTSAk~N~Gi~elF  167 (218)
T KOG0088|consen  143 AYAESVGAL-YMETSAKDNVGISELF  167 (218)
T ss_pred             HHHHhhchh-heecccccccCHHHHH
Confidence            999999995 6689999999999873

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=2.4e-27  Score=176.23  Aligned_cols=105  Identities=18%  Similarity=0.312  Sum_probs=96.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||+|++.|..+++.+++++|++|+|||+++++||+.+ ..|+..+.++.+++|++|||||+|+.++          
T Consensus        51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~  130 (178)
T cd04131          51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQ  130 (178)
T ss_pred             EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhc
Confidence            57999999999999999999999999999999999999996 7999999988889999999999999641          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~  105 (170)
                       .++|+.+++.++|+++++..|+||||++|.| |+++|
T Consensus       131 ~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F  168 (178)
T cd04131         131 RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIF  168 (178)
T ss_pred             CCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHH
Confidence             3579999999999999987789999999995 99874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=3.6e-27  Score=181.98  Aligned_cols=105  Identities=17%  Similarity=0.312  Sum_probs=96.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|++.|..+++.||+++|++|+|||+++++||+++ ..|+.++....+++|+||||||+|+..+          
T Consensus        63 l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~  142 (232)
T cd04174          63 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQ  142 (232)
T ss_pred             EEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccc
Confidence            57999999999999999999999999999999999999985 8999999887788999999999999641          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcc-hhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQ-EVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~-~v~~~~  105 (170)
                       .+.|+.++++++|+++++..|+||||++|. ||+++|
T Consensus       143 ~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F  180 (232)
T cd04174         143 KQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIF  180 (232)
T ss_pred             cCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHH
Confidence             268999999999999999778899999997 799884

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=5.7e-27  Score=177.58  Aligned_cols=103  Identities=35%  Similarity=0.557  Sum_probs=94.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||+|+++|..+++.||+++||+|+|||+++++||+.+..|+..+.+.. +++|++|||||+|+.. .+.|+.++++
T Consensus        51 l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~  129 (202)
T cd04120          51 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGE  129 (202)
T ss_pred             EEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            5799999999999999999999999999999999999999999999887765 6899999999999987 7899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++.....|++|||++|.||+++
T Consensus       130 ~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120         130 KFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             HHHHhcCCCEEEEecCCCCCCHHHH
Confidence            9998863335789999999999987

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=6.2e-27  Score=175.69  Aligned_cols=104  Identities=21%  Similarity=0.363  Sum_probs=94.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      |+||||+|+++|..+++.||+++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+..         
T Consensus        53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~  132 (191)
T cd01875          53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQ  132 (191)
T ss_pred             EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhc
Confidence            579999999999999999999999999999999999999997 6998888776889999999999997521         


Q ss_pred             --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                        +.|+.+++..+|+.++...|++|||++|.||.++
T Consensus       133 ~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~  168 (191)
T cd01875         133 GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEV  168 (191)
T ss_pred             cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHH
Confidence              4588899999999999777889999999999987

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.93  E-value=1.1e-25  Score=169.66  Aligned_cols=102  Identities=20%  Similarity=0.234  Sum_probs=91.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|++.  .+++.||+++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+.          
T Consensus        68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccc
Confidence            57999999986  46778999999999999999999999997 599999877788999999999998641          


Q ss_pred             --------CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 --------TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 --------~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                              .+.|+.++++++|+++|+ .|+||||++|.||+++|
T Consensus       146 ~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F  188 (195)
T cd01873         146 PLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVF  188 (195)
T ss_pred             ccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHH
Confidence                    378999999999999998 68899999999999873

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=1.5e-25  Score=165.96  Aligned_cols=105  Identities=17%  Similarity=0.273  Sum_probs=95.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|+++|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+.++          
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~  130 (175)
T cd01874          51 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN  130 (175)
T ss_pred             EEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhc
Confidence            479999999999999999999999999999999999999997 599998877788999999999998652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.|+.+++++++++.+...|++|||++|.||.+++
T Consensus       131 ~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f  167 (175)
T cd01874         131 KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF  167 (175)
T ss_pred             cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHH
Confidence             268999999999999987778999999999999873

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=3.3e-25  Score=164.56  Aligned_cols=102  Identities=28%  Similarity=0.415  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|+++|..+++.|+++||++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus        31 l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~e~~  109 (176)
T PTZ00099         31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGM  109 (176)
T ss_pred             EEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999987765 6899999999999987 7789999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++. .|+++||++|.||.++
T Consensus       110 ~~~~~~~~-~~~e~SAk~g~nV~~l  133 (176)
T PTZ00099        110 QKAQEYNT-MFHETSAKAGHNIKVL  133 (176)
T ss_pred             HHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99998887 5789999999999987

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.93  E-value=3.1e-25  Score=170.26  Aligned_cols=108  Identities=18%  Similarity=0.283  Sum_probs=95.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|++.|..+++.+|+++|++|+|||+++++||+.+ ..|...+....+++|+||||||+|+..+          
T Consensus        51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~  130 (222)
T cd04173          51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQ  130 (222)
T ss_pred             EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhc
Confidence            57999999999999999999999999999999999999999 5788888777789999999999999652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHHHHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAEQVQ  108 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~~~~  108 (170)
                       ..+|+.+++..+|++.|+..|+||||+++.+ |.++|...
T Consensus       131 ~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~  171 (222)
T cd04173         131 RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA  171 (222)
T ss_pred             cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence             1258999999999999987899999999985 99885443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0095|consensus

Probab=99.93  E-value=7e-26  Score=160.37  Aligned_cols=113  Identities=35%  Similarity=0.515  Sum_probs=101.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ||||||+|||+|+++..+||+.|+++|+|||++-..||+.+..|+.+|.++. ..+-.|+||||.|+.+ .|+|+..-++
T Consensus        58 lqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qige  136 (213)
T KOG0095|consen   58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGE  136 (213)
T ss_pred             EEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHH
Confidence            6899999999999999999999999999999999999999999999999998 6788899999999998 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHHH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQ  117 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~  117 (170)
                      +|+.... .+|.|+||+...||+..  |.+..+....+
T Consensus       137 efs~~qd-myfletsakea~nve~l--f~~~a~rli~~  171 (213)
T KOG0095|consen  137 EFSEAQD-MYFLETSAKEADNVEKL--FLDLACRLISE  171 (213)
T ss_pred             HHHHhhh-hhhhhhcccchhhHHHH--HHHHHHHHHHH
Confidence            9998854 48999999999999976  45555555443

>KOG0097|consensus

Probab=99.93  E-value=1.8e-25  Score=157.18  Aligned_cols=102  Identities=33%  Similarity=0.546  Sum_probs=97.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||+|||+|+...++||+++-|.+.|||++.+.+++.+..|+...+... |+..++++|||.|+.. .|.|+.+++.
T Consensus        62 lqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak  140 (215)
T KOG0097|consen   62 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAK  140 (215)
T ss_pred             EEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHH
Confidence            5899999999999999999999999999999999999999999999988776 8999999999999999 9999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +|+.+.|. .|.++||++|+||+++
T Consensus       141 ~faeengl-~fle~saktg~nveda  164 (215)
T KOG0097|consen  141 EFAEENGL-MFLEASAKTGQNVEDA  164 (215)
T ss_pred             HHHhhcCe-EEEEecccccCcHHHH
Confidence            99999998 5889999999999987

>KOG0393|consensus

Probab=99.93  E-value=2.1e-25  Score=166.28  Aligned_cols=105  Identities=24%  Similarity=0.326  Sum_probs=98.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |.+|||+||+.|..+++..|.++|+|++||++.+++||+++. .|++++.+++|++|+||||+|.||.++          
T Consensus        55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~  134 (198)
T KOG0393|consen   55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQ  134 (198)
T ss_pred             EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhc
Confidence            579999999999999999999999999999999999999985 899999999999999999999999863          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       ...|+.+++..+|++.|+..|+||||++..|+.++|
T Consensus       135 ~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF  171 (198)
T KOG0393|consen  135 GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVF  171 (198)
T ss_pred             cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHH
Confidence             247999999999999999999999999999999873

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=5.8e-25  Score=162.38  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=94.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+.+..  +++|++|||||+|+.+ .+.++.+++
T Consensus        52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~  130 (172)
T cd04141          52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEG  130 (172)
T ss_pred             EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHH
Confidence            4799999999999999999999999999999999999999999988877653  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |++|||++|.||+++
T Consensus       131 ~~~a~~~~~~-~~e~Sa~~~~~v~~~  155 (172)
T cd04141         131 RNLAREFNCP-FFETSAALRHYIDDA  155 (172)
T ss_pred             HHHHHHhCCE-EEEEecCCCCCHHHH
Confidence            9999999984 779999999999987

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04122 Rab14 Rab14 subfamily

Probab=99.92  E-value=9.7e-25  Score=159.60  Aligned_cols=102  Identities=32%  Similarity=0.535  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... ++.|+++||||+|+.. .+.++.+++.
T Consensus        53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~  131 (166)
T cd04122          53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAK  131 (166)
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHH
Confidence            4799999999999999999999999999999999999999999999987765 7899999999999988 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++..++ .|+++||++|.||.++
T Consensus       132 ~~~~~~~~-~~~e~Sa~~~~~i~e~  155 (166)
T cd04122         132 QFADENGL-LFLECSAKTGENVEDA  155 (166)
T ss_pred             HHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99999887 4778999999999987

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=7.2e-25  Score=162.20  Aligned_cols=105  Identities=21%  Similarity=0.294  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      |+||||+|++.|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+.+.          
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~  130 (174)
T cd01871          51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  130 (174)
T ss_pred             EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhc
Confidence            479999999999999999999999999999999999999996 699888777688999999999999641          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.|+.+++..+++.++...|++|||++|.||++++
T Consensus       131 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  167 (174)
T cd01871         131 KLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVF  167 (174)
T ss_pred             cCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHH
Confidence             246899999999999997678899999999999873

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04126 Rab20 Rab20 subfamily

Probab=99.92  E-value=2e-24  Score=165.59  Aligned_cols=104  Identities=29%  Similarity=0.416  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC-----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG-----------   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~-----------   68 (170)
                      |.||||+|++.|..++..|++++|++|+|||+++++||+.+..|+..+.+.. +++|+||||||+|+.+           
T Consensus        46 l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~  125 (220)
T cd04126          46 ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDA  125 (220)
T ss_pred             EEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccc
Confidence            4799999999999999999999999999999999999999999888777654 6799999999999864           


Q ss_pred             -------CCCCCCHHHHHHHHHhcCC-------------CeEEEcccCCcchhhhH
Q psy17235         69 -------TTPQVTEADMENFWSRRSS-------------RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        69 -------~~~~v~~~~~~~~a~~~~~-------------~~~~e~Sa~~~~~v~~~  104 (170)
                             ..+.|+.+++..+|++.+.             ..|+||||++|.||+++
T Consensus       126 ~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~el  181 (220)
T cd04126         126 GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDEL  181 (220)
T ss_pred             cccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHH
Confidence                   1588999999999999872             35889999999999987

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.92  E-value=2.5e-24  Score=162.50  Aligned_cols=103  Identities=26%  Similarity=0.406  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      ++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+....     .++|++|||||+|+.. .+.++.
T Consensus        52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~  130 (201)
T cd04107          52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDG  130 (201)
T ss_pred             EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCH
Confidence            4799999999999999999999999999999999999999999998886542     5789999999999986 678999


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.++++..++..|+++||++|.||+++
T Consensus       131 ~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107         131 EQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             HHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999767889999999999987

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=2.1e-24  Score=159.53  Aligned_cols=102  Identities=34%  Similarity=0.555  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||+++|..++..+++++|++++|||+++++||..+..|+..+....  +++|+++||||+|+.+ .+.++.+++
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~  143 (180)
T cd04127          65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQA  143 (180)
T ss_pred             EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHH
Confidence            4799999999999999999999999999999999999999999999987764  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++.++++ |+++||++|.|++++
T Consensus       144 ~~~~~~~~~~-~~e~Sak~~~~v~~l  168 (180)
T cd04127         144 KALADKYGIP-YFETSAATGTNVEKA  168 (180)
T ss_pred             HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            9999999975 779999999999987

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=2.3e-24  Score=163.14  Aligned_cols=100  Identities=22%  Similarity=0.479  Sum_probs=89.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||+|+++|..+++.||+++|++|+|||++++.||+.+..|+.++.+..+++|++|||||+|+..  +.+..++ ..
T Consensus        46 l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~--~~v~~~~-~~  122 (200)
T smart00176       46 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD--RKVKAKS-IT  122 (200)
T ss_pred             EEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc--ccCCHHH-HH
Confidence            57999999999999999999999999999999999999999999999998878999999999999964  4566555 46


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++. |++|||++|.||.++
T Consensus       123 ~~~~~~~~-~~e~SAk~~~~v~~~  145 (200)
T smart00176      123 FHRKKNLQ-YYDISAKSNYNFEKP  145 (200)
T ss_pred             HHHHcCCE-EEEEeCCCCCCHHHH
Confidence            78877774 778999999999988

Ran is involved in the active transport of proteins through nuclear pores.

>cd04134 Rho3 Rho3 subfamily

Probab=99.92  E-value=3.4e-24  Score=160.45  Aligned_cols=103  Identities=25%  Similarity=0.322  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC--------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP--------   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--------   71 (170)
                      ++||||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|++|||||+|+.+ .+        
T Consensus        50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~-~~~~~~~~~~  128 (189)
T cd04134          50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE-ARNERDDLQR  128 (189)
T ss_pred             EEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc-ChhhHHHHhh
Confidence            579999999999999999999999999999999999999986 69999987778999999999999976 32        


Q ss_pred             ----CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 ----QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ----~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                          .++.+++..+++..+...|+++||++|.||+++
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~  165 (189)
T cd04134         129 YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEA  165 (189)
T ss_pred             ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHH
Confidence                477888999999888667899999999999987

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.91  E-value=4.5e-24  Score=154.99  Aligned_cols=102  Identities=29%  Similarity=0.514  Sum_probs=96.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC-CCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~-~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+|||++|++.|..++..+++++|++|+|||+++++||+.+..|++.+....+ ++|++|||||+|+.+ .+.|+.++++
T Consensus        50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~  128 (162)
T PF00071_consen   50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQ  128 (162)
T ss_dssp             EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccchhhHHH
Confidence            57999999999999999999999999999999999999999999999999986 799999999999988 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++++ ..|+++||+++.||.++
T Consensus       129 ~~~~~~~-~~~~e~Sa~~~~~v~~~  152 (162)
T PF00071_consen  129 EFAKELG-VPYFEVSAKNGENVKEI  152 (162)
T ss_dssp             HHHHHTT-SEEEEEBTTTTTTHHHH
T ss_pred             HHHHHhC-CEEEEEECCCCCCHHHH
Confidence            9999999 56889999999999987

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.91  E-value=4.7e-24  Score=156.72  Aligned_cols=104  Identities=26%  Similarity=0.397  Sum_probs=94.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++|||+|++.|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+..+          
T Consensus        48 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  127 (174)
T smart00174       48 LGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQ  127 (174)
T ss_pred             EEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcc
Confidence            479999999999999999999999999999999999999996 699999887789999999999998651          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.|+.+++.++++..++..|+++||++|.||+++
T Consensus       128 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l  163 (174)
T smart00174      128 KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREV  163 (174)
T ss_pred             cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHH
Confidence             23488999999999999867889999999999987

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04117 Rab15 Rab15 subfamily

Probab=99.91  E-value=7.1e-24  Score=154.69  Aligned_cols=102  Identities=27%  Similarity=0.480  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|++.|..++..+++++|++++|||+++++||+.+..|+..+.... .++|+++||||+|+.+ .+.++.+++.
T Consensus        51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~  129 (161)
T cd04117          51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGN  129 (161)
T ss_pred             EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999988776 5799999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |++|||++|.||+++
T Consensus       130 ~~~~~~~~~-~~e~Sa~~~~~v~~~  153 (161)
T cd04117         130 KLAKEYGMD-FFETSACTNSNIKES  153 (161)
T ss_pred             HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999999864 789999999999976

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0395|consensus

Probab=99.91  E-value=9.3e-24  Score=159.18  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=96.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |+|+||+|++.|..|...|++++||+++||+++|+.||+.+..++..|.+..  .++|+++||||+|+.. .|.|+.+++
T Consensus        53 l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg  131 (196)
T KOG0395|consen   53 LEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEG  131 (196)
T ss_pred             EEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHH
Confidence            4699999999999999999999999999999999999999999999995544  6789999999999998 899999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+|..++++ |+|+||+.+.||+++
T Consensus       132 ~~la~~~~~~-f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen  132 KALARSWGCA-FIETSAKLNYNVDEV  156 (196)
T ss_pred             HHHHHhcCCc-EEEeeccCCcCHHHH
Confidence            9999999998 999999999999987

>cd04136 Rap_like Rap-like subfamily

Probab=99.91  E-value=1.7e-23  Score=151.83  Aligned_cols=102  Identities=25%  Similarity=0.380  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||+++|..+++.|++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .+.++.+++
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  129 (163)
T cd04136          51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEG  129 (163)
T ss_pred             EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHH
Confidence            4689999999999999999999999999999999999999999999987764  6899999999999987 678888899


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++. .|+++||++|.||.++
T Consensus       130 ~~~~~~~~~-~~~~~Sa~~~~~v~~l  154 (163)
T cd04136         130 QALARQWGC-PFYETSAKSKINVDEV  154 (163)
T ss_pred             HHHHHHcCC-eEEEecCCCCCCHHHH
Confidence            999998885 5789999999999976

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04144 Ras2 Ras2 subfamily

Probab=99.90  E-value=2.2e-23  Score=156.12  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||+|+++|..++..|++++|++|+|||++++.||+.+..|+..+....    +++|++|||||+|+.+ .+.++..
T Consensus        49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~  127 (190)
T cd04144          49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTE  127 (190)
T ss_pred             EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHH
Confidence            4789999999999999999999999999999999999999999998887653    5799999999999987 7889999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..+++.+++ .|+++||++|.||+++
T Consensus       128 ~~~~~~~~~~~-~~~e~SAk~~~~v~~l  154 (190)
T cd04144         128 EGAALARRLGC-EFIEASAKTNVNVERA  154 (190)
T ss_pred             HHHHHHHHhCC-EEEEecCCCCCCHHHH
Confidence            99999999987 4789999999999976

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.90  E-value=3.8e-23  Score=154.70  Aligned_cols=102  Identities=22%  Similarity=0.365  Sum_probs=93.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||+|++.|..++..|++++|++++|||+++++||+.+..|+..+.+..  +++|+++||||+|+.+ .+.++.+++
T Consensus        55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~  133 (189)
T PTZ00369         55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEG  133 (189)
T ss_pred             EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence            4689999999999999999999999999999999999999999999987765  5899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++.+ |+++||++|.||.++
T Consensus       134 ~~~~~~~~~~-~~e~Sak~~~gi~~~  158 (189)
T PTZ00369        134 QELAKSFGIP-FLETSAKQRVNVDEA  158 (189)
T ss_pred             HHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence            9999988874 779999999999976

>cd01865 Rab3 Rab3 subfamily

Probab=99.90  E-value=2.8e-23  Score=151.85  Aligned_cols=102  Identities=31%  Similarity=0.515  Sum_probs=94.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..+++++|++++|||+++++||+.+..|+..+.... +++|+++||||+|+.. .+.++.+++.
T Consensus        52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~  130 (165)
T cd01865          52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGR  130 (165)
T ss_pred             EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998776 6899999999999987 7788889999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.++.+ |+++||++|.|+.+.
T Consensus       131 ~~~~~~~~~-~~~~Sa~~~~gv~~l  154 (165)
T cd01865         131 QLADQLGFE-FFEASAKENINVKQV  154 (165)
T ss_pred             HHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999988885 778999999999976

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.90  E-value=4.1e-23  Score=153.67  Aligned_cols=104  Identities=22%  Similarity=0.382  Sum_probs=93.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC---CCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---TPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---~~~v~~~   76 (170)
                      ++||||||++.|..+++.+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+...   .+.++.+
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~  130 (187)
T cd04132          51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPA  130 (187)
T ss_pred             EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHH
Confidence            479999999999999999999999999999999999999996 599888776688999999999998652   2468889


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++.+++..++...|+++||++|.||.++
T Consensus       131 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132         131 QAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             HHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999867889999999999987

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=2.9e-23  Score=159.08  Aligned_cols=101  Identities=22%  Similarity=0.454  Sum_probs=90.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||+|++.|..++..||+++|++|+|||++++.||+.+..|+..+....+++|++|||||+|+..  +.++.+++ .
T Consensus        64 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~--~~v~~~~~-~  140 (219)
T PLN03071         64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQV-T  140 (219)
T ss_pred             EEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh--ccCCHHHH-H
Confidence            57999999999999999999999999999999999999999999999988778999999999999964  56666666 7


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +++..+++ |++|||++|.||.++|
T Consensus       141 ~~~~~~~~-~~e~SAk~~~~i~~~f  164 (219)
T PLN03071        141 FHRKKNLQ-YYEISAKSNYNFEKPF  164 (219)
T ss_pred             HHHhcCCE-EEEcCCCCCCCHHHHH
Confidence            77777764 7789999999999873

>cd04175 Rap1 Rap1 subgroup

Probab=99.90  E-value=3.4e-23  Score=150.91  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=93.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..+++.+++++|++++|||++++.||+.+..|+..+....  +++|++|||||+|+.+ .+.++.+++
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  129 (164)
T cd04175          51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQG  129 (164)
T ss_pred             EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHH
Confidence            4699999999999999999999999999999999999999999999987654  7899999999999987 778888889


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.+++ .|+++||++|.|+.++
T Consensus       130 ~~~~~~~~~-~~~~~Sa~~~~~v~~~  154 (164)
T cd04175         130 QNLARQWGC-AFLETSAKAKINVNEI  154 (164)
T ss_pred             HHHHHHhCC-EEEEeeCCCCCCHHHH
Confidence            999988886 5779999999999986

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.90  E-value=3.3e-23  Score=152.60  Aligned_cols=104  Identities=22%  Similarity=0.350  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++|||||++.|..+++.+++++|++|+|||++++.||+.+. .|+..+....+++|+++||||+|+...          
T Consensus        50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  129 (173)
T cd04130          50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARY  129 (173)
T ss_pred             EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhc
Confidence            478999999999999999999999999999999999999985 799888876678999999999998641          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.|+.+++..+++..+...|+++||++|.||+++
T Consensus       130 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~l  165 (173)
T cd04130         130 GEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEV  165 (173)
T ss_pred             CCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence             46889999999999999978999999999999987

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.90  E-value=3.1e-23  Score=151.28  Aligned_cols=100  Identities=18%  Similarity=0.328  Sum_probs=87.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC-CCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG-TTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~-~~~~v~~~~   77 (170)
                      ++||||+|++.     ..|++++|++++|||++++.||+.+..|++++..+.  +++|++|||||+|+.. ..+.|+.++
T Consensus        49 l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~  123 (158)
T cd04103          49 LLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR  123 (158)
T ss_pred             EEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH
Confidence            47999999975     457899999999999999999999999999998775  6799999999999853 268899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +.+++++.+...|++|||++|.||+++|
T Consensus       124 ~~~~~~~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103         124 ARQLCADMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             HHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence            9999988764568899999999999873

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04176 Rap2 Rap2 subgroup

Probab=99.90  E-value=4.4e-23  Score=150.04  Aligned_cols=102  Identities=29%  Similarity=0.382  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||+|+++|..+++.|++++|++++|||++++.||+.+..|+..+.+..  .++|+++||||+|+.. .+.++..++
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~  129 (163)
T cd04176          51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEG  129 (163)
T ss_pred             EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHH
Confidence            4689999999999999999999999999999999999999999999887764  6899999999999977 678888889


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+. .|+++||+++.|+.++
T Consensus       130 ~~~~~~~~~-~~~~~Sa~~~~~v~~l  154 (163)
T cd04176         130 RALAEEWGC-PFMETSAKSKTMVNEL  154 (163)
T ss_pred             HHHHHHhCC-EEEEecCCCCCCHHHH
Confidence            999988887 5779999999999977

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04109 Rab28 Rab28 subfamily

Probab=99.90  E-value=6.6e-23  Score=156.47  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=93.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||+|++.|..+++.|++++|++|+|||+++++||+.+..|+..+.+..    .++|+++||||+|+.+ .+.++.+
T Consensus        52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~  130 (215)
T cd04109          52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDD  130 (215)
T ss_pred             EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHH
Confidence            4799999999999999999999999999999999999999999999988765    3578999999999987 7899999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..+++.++++ ++++||++|.||++.
T Consensus       131 ~~~~~~~~~~~~-~~~iSAktg~gv~~l  157 (215)
T cd04109         131 KHARFAQANGME-SCLVSAKTGDRVNLL  157 (215)
T ss_pred             HHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999999874 668999999999987

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01864 Rab19 Rab19 subfamily

Probab=99.90  E-value=5e-23  Score=150.28  Aligned_cols=103  Identities=32%  Similarity=0.515  Sum_probs=96.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.. .+.+..+++.
T Consensus        54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~  132 (165)
T cd01864          54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEAC  132 (165)
T ss_pred             EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998765 6899999999999987 7788999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++...++++||++|.|++++
T Consensus       133 ~~~~~~~~~~~~e~Sa~~~~~v~~~  157 (165)
T cd01864         133 TLAEKNGMLAVLETSAKESQNVEEA  157 (165)
T ss_pred             HHHHHcCCcEEEEEECCCCCCHHHH
Confidence            9999999888899999999999976

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=5.3e-23  Score=149.19  Aligned_cols=102  Identities=28%  Similarity=0.403  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..+++++|++++|||+++++||+.+..|+..+....+++|+++||||+|+.. .+.++.+++..
T Consensus        53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~v~~~~~~~  131 (162)
T cd04106          53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD-QAVITNEEAEA  131 (162)
T ss_pred             EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc-ccCCCHHHHHH
Confidence            47999999999999999999999999999999999999999999999887778999999999999987 77889999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+++ |+++||++|.|+++.
T Consensus       132 ~~~~~~~~-~~~~Sa~~~~~v~~l  154 (162)
T cd04106         132 LAKRLQLP-LFRTSVKDDFNVTEL  154 (162)
T ss_pred             HHHHcCCe-EEEEECCCCCCHHHH
Confidence            99999985 778999999999976

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=1.1e-22  Score=149.00  Aligned_cols=102  Identities=31%  Similarity=0.493  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.+..+++.
T Consensus        54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~  132 (167)
T cd01867          54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGE  132 (167)
T ss_pred             EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998765 6899999999999987 7888999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++..++.+ |+++||++|.||+++
T Consensus       133 ~~~~~~~~~-~~~~Sa~~~~~v~~~  156 (167)
T cd01867         133 ALADEYGIK-FLETSAKANINVEEA  156 (167)
T ss_pred             HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999998885 789999999999976

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04111 Rab39 Rab39 subfamily

Probab=99.89  E-value=1e-22  Score=155.12  Aligned_cols=103  Identities=34%  Similarity=0.486  Sum_probs=94.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |++|||+|++.|..++..+++++|++++|||+++++||+.+..|+.++....  ..+|++|||||+|+.. .+.++.+++
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~  132 (211)
T cd04111          54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEA  132 (211)
T ss_pred             EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHH
Confidence            5799999999999999999999999999999999999999999999988765  4688999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ..+++.+++ .|+++||++|.||++++
T Consensus       133 ~~~~~~~~~-~~~e~Sak~g~~v~e~f  158 (211)
T cd04111         133 EKLAKDLGM-KYIETSARTGDNVEEAF  158 (211)
T ss_pred             HHHHHHhCC-EEEEEeCCCCCCHHHHH
Confidence            999999995 58899999999999873

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=1.5e-22  Score=147.80  Aligned_cols=102  Identities=36%  Similarity=0.555  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||+++|..++..+++++|++++|||+++++||..+..|+..+.... ++.|+++||||+|+.. .+.++.+++.
T Consensus        53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~  131 (166)
T cd01869          53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQ  131 (166)
T ss_pred             EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998776 6899999999999987 7789999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.||++.
T Consensus       132 ~~~~~~~~~-~~~~Sa~~~~~v~~~  155 (166)
T cd01869         132 EFADELGIP-FLETSAKNATNVEQA  155 (166)
T ss_pred             HHHHHcCCe-EEEEECCCCcCHHHH
Confidence            999998885 778999999999976

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04116 Rab9 Rab9 subfamily

Probab=99.89  E-value=1.4e-22  Score=148.45  Aligned_cols=102  Identities=27%  Similarity=0.529  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      ++||||||+++|..++..+++++|++++|||+++++||+.+..|+.++....     +++|++|||||+|+.  .+.++.
T Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~  133 (170)
T cd04116          56 LQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVST  133 (170)
T ss_pred             EEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCH
Confidence            4799999999999999999999999999999999999999999999887654     468999999999986  468889


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++++++++...|+++||++|.|+.++
T Consensus       134 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116         134 EEAQAWCRENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             HHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence            99999999999777899999999999976

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04128 Spg1 Spg1p

Probab=99.89  E-value=1.8e-22  Score=150.55  Aligned_cols=102  Identities=14%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC----CCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT----TPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~----~~~v~~   75 (170)
                      |+||||+|++.|..+++.+++++|++++|||++++.||+.+..|+..+.+.. ..+| ++||||+|+..+    .+.+..
T Consensus        51 l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~  129 (182)
T cd04128          51 FSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEIT  129 (182)
T ss_pred             EEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhH
Confidence            5799999999999999999999999999999999999999999999998765 4567 688999998521    122234


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++++++..++ .|+++||++|.||++.
T Consensus       130 ~~~~~~a~~~~~-~~~e~SAk~g~~v~~l  157 (182)
T cd04128         130 KQARKYAKAMKA-PLIFCSTSHSINVQKI  157 (182)
T ss_pred             HHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            678889999996 5778999999999987

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=1.5e-22  Score=147.88  Aligned_cols=102  Identities=23%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      +++|||+|+++|..++..+++++|++++|||+++++||+.+..|+..+.+..    +++|++|||||+|+.. .+.+..+
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~  129 (165)
T cd04140          51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSN  129 (165)
T ss_pred             EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHH
Confidence            4799999999999999999999999999999999999999999988776643    6799999999999987 6789999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..++..+++ .|+++||++|.||.+.
T Consensus       130 ~~~~~~~~~~~-~~~e~SA~~g~~v~~~  156 (165)
T cd04140         130 EGAACATEWNC-AFMETSAKTNHNVQEL  156 (165)
T ss_pred             HHHHHHHHhCC-cEEEeecCCCCCHHHH
Confidence            99999998887 4789999999999976

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=99.89  E-value=3.2e-22  Score=150.93  Aligned_cols=102  Identities=30%  Similarity=0.431  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..++++++++++|||+++++||+.+..|+..+....+++|++|||||+|+.. .+.++.+++..
T Consensus        57 l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~-~~~~~~~~~~~  135 (199)
T cd04110          57 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE-RKVVETEDAYK  135 (199)
T ss_pred             EEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccccCHHHHHH
Confidence            46999999999999999999999999999999999999999999999988778899999999999987 77889999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+.+ |+++||++|.||.+.
T Consensus       136 ~~~~~~~~-~~e~Sa~~~~gi~~l  158 (199)
T cd04110         136 FAGQMGIS-LFETSAKENINVEEM  158 (199)
T ss_pred             HHHHcCCE-EEEEECCCCcCHHHH
Confidence            99988864 779999999999987

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=99.89  E-value=3.7e-22  Score=148.98  Aligned_cols=102  Identities=33%  Similarity=0.472  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..+++++|++++|||+++++||..+..|+.++.... .++|+++||||+|+.+ .+.++.+++.
T Consensus        51 ~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~  129 (188)
T cd04125          51 LQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAK  129 (188)
T ss_pred             EEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998776 5799999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||++|.|++++
T Consensus       130 ~~~~~~~~-~~~evSa~~~~~i~~~  153 (188)
T cd04125         130 SFCDSLNI-PFFETSAKQSINVEEA  153 (188)
T ss_pred             HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99998888 5779999999999987

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.88  E-value=3.3e-22  Score=149.79  Aligned_cols=102  Identities=36%  Similarity=0.544  Sum_probs=94.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||+++|..++..+++++|++|+|||++++.||+++..|+..+.... .++|+++||||+|+.. .+.++.+++.
T Consensus        52 ~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~  130 (191)
T cd04112          52 LQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGE  130 (191)
T ss_pred             EEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 5899999999999987 6888999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++. .|+++||++|.||.++
T Consensus       131 ~l~~~~~~-~~~e~Sa~~~~~v~~l  154 (191)
T cd04112         131 RLAKEYGV-PFMETSAKTGLNVELA  154 (191)
T ss_pred             HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999887 4789999999999976

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.88  E-value=4.1e-22  Score=152.31  Aligned_cols=102  Identities=34%  Similarity=0.522  Sum_probs=94.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.... .++|+++||||+|+.. .+.++.+++.
T Consensus        63 l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~  141 (216)
T PLN03110         63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQ  141 (216)
T ss_pred             EEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999988776 5899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++..+++ .|+++||++|.|++++
T Consensus       142 ~l~~~~~~-~~~e~SA~~g~~v~~l  165 (216)
T PLN03110        142 ALAEKEGL-SFLETSALEATNVEKA  165 (216)
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99998877 4778999999999987

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.88  E-value=4.2e-22  Score=146.83  Aligned_cols=102  Identities=31%  Similarity=0.489  Sum_probs=89.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCC--CCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTP--QVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~--~v~~~   76 (170)
                      ++||||+|+++|..++..+++++|++++|||+++++||+.+..|+..+.+..  .++|+++||||+|+.. .+  .+..+
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~-~~~~~~~~~  129 (170)
T cd04108          51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS-PAQYALMEQ  129 (170)
T ss_pred             EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc-cccccccHH
Confidence            5799999999999999999999999999999999999999999999987654  4588999999999965 33  34677


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..+++.++.+ |+++||++|.||+++
T Consensus       130 ~~~~~~~~~~~~-~~e~Sa~~g~~v~~l  156 (170)
T cd04108         130 DAIKLAAEMQAE-YWSVSALSGENVREF  156 (170)
T ss_pred             HHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            888899888875 678999999999977

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=4.2e-22  Score=144.62  Aligned_cols=102  Identities=23%  Similarity=0.392  Sum_probs=93.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.+..  .++|++|||||+|+.. .+.++.+++
T Consensus        52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~  130 (164)
T cd04145          52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEG  130 (164)
T ss_pred             EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHH
Confidence            4689999999999999999999999999999999999999999999887654  6899999999999987 678888899


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++..++ .|+++||++|.||.++
T Consensus       131 ~~~~~~~~~-~~~~~Sa~~~~~i~~l  155 (164)
T cd04145         131 QELARKLKI-PYIETSAKDRLNVDKA  155 (164)
T ss_pred             HHHHHHcCC-cEEEeeCCCCCCHHHH
Confidence            999998887 4679999999999976

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03108 Rab family protein; Provisional

Probab=99.88  E-value=6.9e-22  Score=150.42  Aligned_cols=102  Identities=35%  Similarity=0.506  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.++++
T Consensus        57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~  135 (210)
T PLN03108         57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGE  135 (210)
T ss_pred             EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999887665 6899999999999988 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.+++ .|+++||+++.||.++
T Consensus       136 ~~~~~~~~-~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108        136 QFAKEHGL-IFMEASAKTAQNVEEA  159 (210)
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999987 5789999999999988

>cd01866 Rab2 Rab2 subfamily

Probab=99.88  E-value=6.3e-22  Score=145.12  Aligned_cols=102  Identities=34%  Similarity=0.508  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|+++|..++..+++++|++++|||++++.||+.+..|+.++..+. +++|++|||||.|+.. .+.++.+++.
T Consensus        55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~  133 (168)
T cd01866          55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGE  133 (168)
T ss_pred             EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998775 7899999999999987 6789999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++ .|+++||+++.|++++
T Consensus       134 ~~~~~~~~-~~~e~Sa~~~~~i~~~  157 (168)
T cd01866         134 AFAKEHGL-IFMETSAKTASNVEEA  157 (168)
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999887 4789999999999987

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=99.88  E-value=4.8e-22  Score=144.82  Aligned_cols=102  Identities=34%  Similarity=0.524  Sum_probs=93.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..+++.++++++++++|||++++.||+.+..|+..+.... .++|++|||||+|+.. .+.+..++..
T Consensus        54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~  132 (165)
T cd01868          54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAK  132 (165)
T ss_pred             EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998877 4699999999999987 7888999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++ .|+++||++|.|+.+.
T Consensus       133 ~~~~~~~~-~~~~~Sa~~~~~v~~l  156 (165)
T cd01868         133 AFAEKNGL-SFIETSALDGTNVEEA  156 (165)
T ss_pred             HHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99998876 5789999999999976

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.88  E-value=5.8e-22  Score=145.59  Aligned_cols=102  Identities=30%  Similarity=0.446  Sum_probs=91.2

Q ss_pred             CeEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ++||||+|++.|. .+++.+++++|++++|||++++.||..+..|+..+....  .++|+++||||+|+.+ .+.++.++
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~  131 (170)
T cd04115          53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDL  131 (170)
T ss_pred             EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHH
Confidence            4799999999986 589999999999999999999999999999999988765  6899999999999988 78899999


Q ss_pred             HHHHHHhcCCCeEEEcccCC---cchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVE---PQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~---~~~v~~~  104 (170)
                      +.++++..+++ |+++||++   +.++.++
T Consensus       132 ~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115         132 AQRFADAHSMP-LFETSAKDPSENDHVEAI  160 (170)
T ss_pred             HHHHHHHcCCc-EEEEeccCCcCCCCHHHH
Confidence            99999998865 67899999   6666654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04135 Tc10 TC10 subfamily

Probab=99.88  E-value=6.2e-22  Score=145.40  Aligned_cols=104  Identities=21%  Similarity=0.341  Sum_probs=93.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++|||+|++.|..+++.+++++|++++|||++++.||+.+. .|++.+....+++|+++||||+|+.++          
T Consensus        50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  129 (174)
T cd04135          50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDM  129 (174)
T ss_pred             EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhc
Confidence            468999999999999999999999999999999999999995 688888766688999999999998652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..+++..++..|++|||++|.||+++
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~  165 (174)
T cd04135         130 KEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTV  165 (174)
T ss_pred             cCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHH
Confidence             24788999999999999877999999999999976

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04113 Rab4 Rab4 subfamily

Probab=99.88  E-value=5.7e-22  Score=143.90  Aligned_cols=102  Identities=36%  Similarity=0.541  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |++|||||++.|..++..+++++|++++|||++++.||..+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus        51 l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~  129 (161)
T cd04113          51 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEAS  129 (161)
T ss_pred             EEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHH
Confidence            5799999999999999999999999999999999999999999999887665 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||+++.|+.+.
T Consensus       130 ~~~~~~~~-~~~~~Sa~~~~~i~~~  153 (161)
T cd04113         130 RFAQENGL-LFLETSALTGENVEEA  153 (161)
T ss_pred             HHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99999995 6889999999999976

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.88  E-value=8.3e-22  Score=144.58  Aligned_cols=100  Identities=21%  Similarity=0.461  Sum_probs=87.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |++|||+|++.|..++..+++++|++|+|||+++++||..+..|+..+....+++|+++||||+|+..  +.+.. +..+
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~--~~~~~-~~~~  127 (166)
T cd00877          51 FNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD--RKVKA-KQIT  127 (166)
T ss_pred             EEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc--ccCCH-HHHH
Confidence            47999999999999999999999999999999999999999999999988877899999999999974  34443 3456


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++ .|+++||++|.||+++
T Consensus       128 ~~~~~~~-~~~e~Sa~~~~~v~~~  150 (166)
T cd00877         128 FHRKKNL-QYYEISAKSNYNFEKP  150 (166)
T ss_pred             HHHHcCC-EEEEEeCCCCCChHHH
Confidence            7766554 5779999999999987

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.88  E-value=1.1e-21  Score=142.70  Aligned_cols=102  Identities=25%  Similarity=0.410  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||+++|..++..+++++|++++|||+++++||+.+..|+..+.+..  .+.|+++||||+|+.. .+.++.+++
T Consensus        50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~  128 (164)
T smart00173       50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEG  128 (164)
T ss_pred             EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHH
Confidence            4789999999999999999999999999999999999999999998887654  5799999999999987 678888999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+. .|+++||++|.|+++.
T Consensus       129 ~~~~~~~~~-~~~~~Sa~~~~~i~~l  153 (164)
T smart00173      129 KELARQWGC-PFLETSAKERVNVDEA  153 (164)
T ss_pred             HHHHHHcCC-EEEEeecCCCCCHHHH
Confidence            999998886 5789999999999976

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.87  E-value=8.7e-22  Score=143.03  Aligned_cols=102  Identities=22%  Similarity=0.380  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC------CCCeEEEEeeCCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA------ENAKIFLCGNKSDLEGTTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~------~~~pvvlvgnK~Dl~~~~~~v~   74 (170)
                      ++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+.++....      .+.|+++||||+|+.+ .+.++
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~  129 (168)
T cd04119          51 VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVS  129 (168)
T ss_pred             EEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccC
Confidence            4799999999999999999999999999999999999999999999998765      3689999999999976 67889


Q ss_pred             HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++...+++ |+++||++|.|+.++
T Consensus       130 ~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  158 (168)
T cd04119         130 EDEGRLWAESKGFK-YFETSACTGEGVNEM  158 (168)
T ss_pred             HHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence            99999999998865 779999999999987

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04177 RSR1 RSR1 subgroup

Probab=99.87  E-value=1.5e-21  Score=142.98  Aligned_cols=103  Identities=25%  Similarity=0.384  Sum_probs=93.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..+++.++++++++++|||++++++|+.+..|...+.+..  .++|++++|||.|+.. .+.++.+++
T Consensus        51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~  129 (168)
T cd04177          51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDG  129 (168)
T ss_pred             EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHH
Confidence            4799999999999999999999999999999999999999999999887643  6899999999999987 788899999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++...|+++||+++.||.++
T Consensus       130 ~~~~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177         130 VSLSQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             HHHHHHcCCceEEEeeCCCCCCHHHH
Confidence            99999988545789999999999976

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.87  E-value=1.2e-21  Score=142.44  Aligned_cols=102  Identities=25%  Similarity=0.375  Sum_probs=93.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+....+++|+++||||+|+.+ .+.++..++..
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~  132 (164)
T cd04101          54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD-KAEVTDAQAQA  132 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCCHHHHHH
Confidence            46999999999999999999999999999999999999999999999887767899999999999977 67888888888


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++ |+++||+++.|+.+.
T Consensus       133 ~~~~~~~~-~~~~Sa~~~~gi~~l  155 (164)
T cd04101         133 FAQANQLK-FFKTSALRGVGYEEP  155 (164)
T ss_pred             HHHHcCCe-EEEEeCCCCCChHHH
Confidence            88888875 778999999999986

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.87  E-value=1.8e-21  Score=140.64  Aligned_cols=101  Identities=22%  Similarity=0.339  Sum_probs=91.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||+|+++|..++..|++++|++++|||++++.||+.+..|+..+.+..  .++|++|||||+|+..  +.+...++
T Consensus        51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~  128 (162)
T cd04138          51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQG  128 (162)
T ss_pred             EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHH
Confidence            4689999999999999999999999999999999999999999999988765  5899999999999975  57788889


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+.+ |+++||++|.|++++
T Consensus       129 ~~~~~~~~~~-~~~~Sa~~~~gi~~l  153 (162)
T cd04138         129 QDLAKSYGIP-YIETSAKTRQGVEEA  153 (162)
T ss_pred             HHHHHHhCCe-EEEecCCCCCCHHHH
Confidence            9999888875 778999999999986

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04149 Arf6 Arf6 subfamily

Probab=99.87  E-value=1e-21  Score=144.47  Aligned_cols=102  Identities=18%  Similarity=0.334  Sum_probs=85.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |++|||||+++|..+|+.+|+++|++|+|||++++.+|..+..|+.++....  +++|++|||||+|+.+   .++.+++
T Consensus        55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  131 (168)
T cd04149          55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEI  131 (168)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHH
Confidence            5799999999999999999999999999999999999999998887776532  6899999999999965   4677777


Q ss_pred             HHHHHhc---CC-CeEEEcccCCcchhhhHH
Q psy17235         79 ENFWSRR---SS-RRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        79 ~~~a~~~---~~-~~~~e~Sa~~~~~v~~~~  105 (170)
                      ..+....   +. ..++++||++|.||.+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~  162 (168)
T cd04149         132 QEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  162 (168)
T ss_pred             HHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence            7765321   11 257899999999999873

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.86  E-value=5.9e-22  Score=145.16  Aligned_cols=102  Identities=18%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~   76 (170)
                      |++|||||++.|..+|..+++++|++++|||.+++.+|..++.|+.++....+++|+++||||+|+.. .+.++.    .
T Consensus        46 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~  124 (164)
T cd04162          46 MELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA-ARSVQEIHKEL  124 (164)
T ss_pred             EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC-CCCHHHHHHHh
Confidence            57999999999999999999999999999999999999999999998876557899999999999977 554442    2


Q ss_pred             HHHHHHHhcCCCeEEEcccCC------cchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVE------PQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~------~~~v~~~  104 (170)
                      ++..++++.++ .|++|||++      ++||+++
T Consensus       125 ~~~~~~~~~~~-~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162         125 ELEPIARGRRW-ILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CChhhcCCCce-EEEEeeecCCCChhHHHHHHHH
Confidence            35667776665 467788887      8887766

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=2.2e-21  Score=144.46  Aligned_cols=98  Identities=15%  Similarity=0.336  Sum_probs=81.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..+|..||+++|++|+|||++++++|..+..|+..+....  +++|++|||||+|+++   .++.++ 
T Consensus        63 ~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~---~~~~~~-  138 (181)
T PLN00223         63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---AMNAAE-  138 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC---CCCHHH-
Confidence            5799999999999999999999999999999999999999988888775432  6899999999999976   344444 


Q ss_pred             HHHHHhcCCC-------eEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSR-------RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~-------~~~e~Sa~~~~~v~~~  104 (170)
                        +....++.       +++++||++|+||.++
T Consensus       139 --~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~  169 (181)
T PLN00223        139 --ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
T ss_pred             --HHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence              33334432       4668999999999987

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.86  E-value=3.7e-21  Score=149.95  Aligned_cols=104  Identities=21%  Similarity=0.294  Sum_probs=91.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----------CCCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----------AENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~----------~~~~pvvlvgnK~Dl~~~~   70 (170)
                      |+||||+|++.|..++..++.++|++|+|||+++++||+.+..|+.++...          ..++|+||||||+|+.. .
T Consensus        50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~  128 (247)
T cd04143          50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-P  128 (247)
T ss_pred             EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-c
Confidence            479999999999999999999999999999999999999999999998754          15799999999999987 6


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +.++.+++.+++.......|+++||++|.||++.+
T Consensus       129 ~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf  163 (247)
T cd04143         129 REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF  163 (247)
T ss_pred             cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            78999999888875544468899999999999873

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.86  E-value=3.5e-21  Score=140.49  Aligned_cols=102  Identities=25%  Similarity=0.323  Sum_probs=89.8

Q ss_pred             CeEEecCCcccc-ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||||++.+ ...+..+++++|++|+|||++++.||+.+..|+..+....   .++|+++||||+|+.. .+.++.+
T Consensus        49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~  127 (165)
T cd04146          49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTE  127 (165)
T ss_pred             EEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHH
Confidence            479999999863 5567889999999999999999999999999998887654   4899999999999977 7889999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCc-chhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEP-QEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~-~~v~~~  104 (170)
                      ++.++++..++ .|+++||+++ .||+++
T Consensus       128 ~~~~~~~~~~~-~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146         128 EGEKLASELGC-LFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             HHHHHHHHcCC-EEEEeCCCCCchhHHHH
Confidence            99999999996 4779999999 589976

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04124 RabL2 RabL2 subfamily

Probab=99.86  E-value=4.8e-21  Score=139.61  Aligned_cols=99  Identities=28%  Similarity=0.452  Sum_probs=86.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+.+..+++|+++||||+|+..   .+ ..+...
T Consensus        51 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~---~~-~~~~~~  126 (161)
T cd04124          51 VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP---SV-TQKKFN  126 (161)
T ss_pred             EEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch---hH-HHHHHH
Confidence            47999999999999999999999999999999999999999999999987777899999999999854   22 345667


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++ ++++||++|.|+++.
T Consensus       127 ~~~~~~~~-~~~~Sa~~~~gv~~l  149 (161)
T cd04124         127 FAEKHNLP-LYYVSAADGTNVVKL  149 (161)
T ss_pred             HHHHcCCe-EEEEeCCCCCCHHHH
Confidence            77777765 667999999999976

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.86  E-value=3.6e-21  Score=145.79  Aligned_cols=102  Identities=21%  Similarity=0.290  Sum_probs=86.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-------------------C-CCCeEEEE
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-------------------A-ENAKIFLC   60 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-------------------~-~~~pvvlv   60 (170)
                      |+||||+|++.|..+++.||+++|++|+|||+++++||+++..|+.++...                   . +++|++||
T Consensus        56 l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilV  135 (202)
T cd04102          56 VELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVI  135 (202)
T ss_pred             EEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEE
Confidence            579999999999999999999999999999999999999999999998763                   1 47999999


Q ss_pred             eeCCCCCCCCCCCCHHH----HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         61 GNKSDLEGTTPQVTEAD----MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        61 gnK~Dl~~~~~~v~~~~----~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |||+|+.+ .|.++.++    ...+|.+.|++.. +.++.++..+-..
T Consensus       136 GnK~Dl~~-~r~~~~~~~~~~~~~ia~~~~~~~i-~~~c~~~~~~~~~  181 (202)
T cd04102         136 GTKLDQIP-EKESSGNLVLTARGFVAEQGNAEEI-NLNCTNGRLLAAG  181 (202)
T ss_pred             EECccchh-hcccchHHHhhHhhhHHHhcCCceE-EEecCCcccccCC
Confidence            99999987 67777764    5567888999844 5588877666554

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04118 Rab24 Rab24 subfamily

Probab=99.86  E-value=7.4e-21  Score=142.29  Aligned_cols=103  Identities=32%  Similarity=0.501  Sum_probs=91.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---CCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT---TPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---~~~v~~~~   77 (170)
                      |+||||+|+++|..++..+++++|++++|||++++.||+.+..|+..+....+++|+++||||+|+...   .+.++.++
T Consensus        52 l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~  131 (193)
T cd04118          52 LGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHD  131 (193)
T ss_pred             EEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHH
Confidence            469999999999999999999999999999999999999999999998877678999999999998541   35677788


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..++++ ++++||+++.||++.
T Consensus       132 ~~~~~~~~~~~-~~~~Sa~~~~gv~~l  157 (193)
T cd04118         132 VQDFADEIKAQ-HFETSSKTGQNVDEL  157 (193)
T ss_pred             HHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            89999888875 668999999999976

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.86  E-value=6.4e-21  Score=140.12  Aligned_cols=105  Identities=22%  Similarity=0.359  Sum_probs=92.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++|||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|+++||||+|+...          
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~  130 (175)
T cd01870          51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKM  130 (175)
T ss_pred             EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhc
Confidence            479999999999999999999999999999999999999985 698888876678999999999998642          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.++..+++++++..+...|++|||++|.||++++
T Consensus       131 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  167 (175)
T cd01870         131 KQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVF  167 (175)
T ss_pred             cCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHH
Confidence             245778899999999988789999999999999873

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04148 RGK RGK subfamily

Probab=99.86  E-value=3.1e-21  Score=148.02  Aligned_cols=101  Identities=22%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             CeEEecCCccccccchhhhcc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYK-FAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~-~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ++||||+|++  ..+...+++ ++|++++|||++++.||+.+..|+..+....  .++|+++||||+|+.. .+.++.++
T Consensus        52 l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~  128 (221)
T cd04148          52 LVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQE  128 (221)
T ss_pred             EEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHH
Confidence            4799999998  334566777 9999999999999999999999999887765  6899999999999987 78899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +..++...+++ |+++||+++.||++.+
T Consensus       129 ~~~~a~~~~~~-~~e~SA~~~~gv~~l~  155 (221)
T cd04148         129 GRACAVVFDCK-FIETSAGLQHNVDELL  155 (221)
T ss_pred             HHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence            99999988874 7789999999999873

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04129 Rho2 Rho2 subfamily

Probab=99.86  E-value=8e-21  Score=141.86  Aligned_cols=104  Identities=20%  Similarity=0.342  Sum_probs=93.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC---------C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------T   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------~   70 (170)
                      +.+|||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|+++||||+|+.++         .
T Consensus        51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~  130 (187)
T cd04129          51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQ  130 (187)
T ss_pred             EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccC
Confidence            468999999999888888999999999999999999999996 699999877788999999999998541         3


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.++.+++..+++.++...|++|||++|.||+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  164 (187)
T cd04129         131 RFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDV  164 (187)
T ss_pred             CcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHH
Confidence            5677889999999999878899999999999977

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.86  E-value=8e-21  Score=137.72  Aligned_cols=102  Identities=43%  Similarity=0.608  Sum_probs=94.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++||+||++.|..++..+++++|++++|||++++.||+.+..|+..+..+. +++|+++|+||+|+.. .+.+..+++.
T Consensus        51 ~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~  129 (164)
T smart00175       51 LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAE  129 (164)
T ss_pred             EEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999988877 7899999999999987 6788999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+++ |+++||++|.|++++
T Consensus       130 ~~~~~~~~~-~~e~Sa~~~~~i~~l  153 (164)
T smart00175      130 AFAEEHGLP-FFETSAKTNTNVEEA  153 (164)
T ss_pred             HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999988886 789999999999976

Rab GTPases are implicated in vesicle trafficking.

>cd04158 ARD1 ARD1 subfamily

Probab=99.85  E-value=7.7e-21  Score=139.64  Aligned_cols=101  Identities=18%  Similarity=0.344  Sum_probs=87.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|..+++++|++++|||++++++|..+..|+..+....  .+.|++|||||+|+.+   .++.+++
T Consensus        45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~  121 (169)
T cd04158          45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEM  121 (169)
T ss_pred             EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHH
Confidence            4799999999999999999999999999999999999999999998887543  5689999999999965   5788888


Q ss_pred             HHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS-----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~-----~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+.     ..|++|||++|.||.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158         122 TELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             HHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            888754432     25889999999999987

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.85  E-value=6.2e-21  Score=138.99  Aligned_cols=101  Identities=15%  Similarity=0.341  Sum_probs=80.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH-
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD-   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~-   77 (170)
                      +++|||||+++|..+|+.||+++|++|+|||++++.||+.+..|+..+....  .++|++|+|||+|+.+   .++.++ 
T Consensus        46 ~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  122 (159)
T cd04150          46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN---AMSAAEV  122 (159)
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC---CCCHHHH
Confidence            4799999999999999999999999999999999999999998888775432  5799999999999965   333433 


Q ss_pred             HHHHHHh---cCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSR---RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...++..   .....++++||++|.||+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150         123 TDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             HHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            2333211   01125779999999999987

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.85  E-value=8.3e-21  Score=140.43  Aligned_cols=101  Identities=19%  Similarity=0.374  Sum_probs=81.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|+.|++++|++|+|||++++.||+.+..|+..+....  +++|++|||||+|+.+   .++.++.
T Consensus        59 l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  135 (175)
T smart00177       59 FTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD---AMKAAEI  135 (175)
T ss_pred             EEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc---CCCHHHH
Confidence            4799999999999999999999999999999999999999999988876442  6799999999999975   3344443


Q ss_pred             HHHHHhcC----CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRS----SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~----~~~~~e~Sa~~~~~v~~~  104 (170)
                      ........    ..+|+++||++|.||.++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177      136 TEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             HHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            33221111    124778999999999987

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04142 RRP22 RRP22 subfamily

Probab=99.85  E-value=1.3e-20  Score=142.27  Aligned_cols=102  Identities=16%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~   68 (170)
                      ++||||||++.|..        ....+++++|++|+|||+++++||+.+..|+..+.+..    +++|++|||||+|+..
T Consensus        51 l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          51 LHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             EEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            46999999765532        23455889999999999999999999999999887653    6799999999999987


Q ss_pred             CCCCCCHHHHHHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235         69 TTPQVTEADMENFWS-RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        69 ~~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.++++.++. .++++ |+++||++|.||++.
T Consensus       131 -~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~~v~~l  165 (198)
T cd04142         131 -HRFAPRHVLSVLVRKSWKCG-YLECSAKYNWHILLL  165 (198)
T ss_pred             -cccccHHHHHHHHHHhcCCc-EEEecCCCCCCHHHH
Confidence             67888888888765 45664 779999999999976

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03118 Rab family protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=142.09  Aligned_cols=102  Identities=28%  Similarity=0.455  Sum_probs=90.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.||||||++.|..++..+++++|++|+|||+++++||+.+.. |...+....  .+.|++|||||+|+.. .+.++.++
T Consensus        64 l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~  142 (211)
T PLN03118         64 LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREE  142 (211)
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHH
Confidence            4799999999999999999999999999999999999999975 666665443  5789999999999987 77888899


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++...++ .|+++||+++.|+++.
T Consensus       143 ~~~~~~~~~~-~~~e~SAk~~~~v~~l  168 (211)
T PLN03118        143 GMALAKEHGC-LFLECSAKTRENVEQC  168 (211)
T ss_pred             HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            9999998887 4789999999999986

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.85  E-value=2.2e-20  Score=135.57  Aligned_cols=102  Identities=31%  Similarity=0.475  Sum_probs=94.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++||+||+++|..++..+++++|++++|||+++++||..+..|+..+.... +++|+++++||+|+.. .+.++.++..
T Consensus        52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~  130 (163)
T cd01860          52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQ  130 (163)
T ss_pred             EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHH
Confidence            4799999999999999999999999999999999999999999999988776 7899999999999987 6788889999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+. .++++||++|.|+.+.
T Consensus       131 ~~~~~~~~-~~~~~Sa~~~~~v~~l  154 (163)
T cd01860         131 EYADENGL-LFFETSAKTGENVNEL  154 (163)
T ss_pred             HHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99999886 5889999999999976

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04123 Rab21 Rab21 subfamily

Probab=99.84  E-value=3.2e-20  Score=133.98  Aligned_cols=102  Identities=26%  Similarity=0.483  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.+..+++.+++++|++++|||++++++|+.+..|+.++.... .++|+++||||+|+.. .+.+..++..
T Consensus        51 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~  129 (162)
T cd04123          51 LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAE  129 (162)
T ss_pred             EEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence            4789999999999999999999999999999999999999999999988776 5799999999999987 7788888999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++..+.+ ++++||+++.|+++.
T Consensus       130 ~~~~~~~~~-~~~~s~~~~~gi~~~  153 (162)
T cd04123         130 EYAKSVGAK-HFETSAKTGKGIEEL  153 (162)
T ss_pred             HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999888876 568999999999987

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01892 Miro2 Miro2 subfamily

Probab=99.84  E-value=1.3e-20  Score=138.69  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+||++|++.+..++..||+++|++++|||++++.||+.+..|+..+... .++|+++||||+|+.+ .+.+...+..+
T Consensus        56 l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~-~~~~~~~~~~~  133 (169)
T cd01892          56 LILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDE-QQQRYEVQPDE  133 (169)
T ss_pred             EEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccc-cccccccCHHH
Confidence            468999999999999999999999999999999999999999998876432 4799999999999976 56666667788


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.+++..++++||+++.|+.+.
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892         134 FCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             HHHHcCCCCCEEEEeccCccHHHH
Confidence            898888876788999999999976

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01861 Rab6 Rab6 subfamily

Probab=99.84  E-value=3.9e-20  Score=134.00  Aligned_cols=102  Identities=28%  Similarity=0.426  Sum_probs=93.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||+++++||+.+..|+..+.... .++|++++|||+|+.. .+.++.++..
T Consensus        51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~  129 (161)
T cd01861          51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGE  129 (161)
T ss_pred             EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHH
Confidence            4799999999999999999999999999999999999999999999987665 4799999999999976 6788989999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+++ ++++||+++.|+++.
T Consensus       130 ~~~~~~~~~-~~~~Sa~~~~~v~~l  153 (161)
T cd01861         130 KKAKELNAM-FIETSAKAGHNVKEL  153 (161)
T ss_pred             HHHHHhCCE-EEEEeCCCCCCHHHH
Confidence            999988865 778999999999976

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01862 Rab7 Rab7 subfamily

Probab=99.84  E-value=4.9e-20  Score=134.69  Aligned_cols=103  Identities=30%  Similarity=0.473  Sum_probs=92.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      |++||+||++.|..++..+++++|++|+|||++++.+|+.+..|...+....     .++|+++||||+|+.. .+.++.
T Consensus        51 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~  129 (172)
T cd01862          51 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVST  129 (172)
T ss_pred             EEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCH
Confidence            4699999999999999999999999999999999999999999998876654     3799999999999986 567888


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++..+...++++||++|.|+.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862         130 KKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             HHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            89999999888667889999999999976

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.83  E-value=3.9e-20  Score=137.80  Aligned_cols=101  Identities=17%  Similarity=0.327  Sum_probs=79.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|+.|++++|++|+|||+++++||..+..|+..+....  .++|++|||||.|+.+   .++.++.
T Consensus        63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  139 (182)
T PTZ00133         63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN---AMSTTEV  139 (182)
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC---CCCHHHH
Confidence            4789999999999999999999999999999999999999988887775432  5799999999999865   3444443


Q ss_pred             HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      ........+    .+++++||++|.|++++
T Consensus       140 ~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133        140 TEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             HHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            222211111    24668999999999987

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=7.8e-20  Score=132.51  Aligned_cols=101  Identities=33%  Similarity=0.505  Sum_probs=91.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+..+.  +++|+++||||+|+..  +.+..++.
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~  128 (161)
T cd01863          51 LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEG  128 (161)
T ss_pred             EEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHH
Confidence            4799999999999999999999999999999999999999999999998776  6899999999999974  56778889


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+++ |+++||++|.|+.+.
T Consensus       129 ~~~~~~~~~~-~~~~Sa~~~~gi~~~  153 (161)
T cd01863         129 LKFARKHNML-FIETSAKTRDGVQQA  153 (161)
T ss_pred             HHHHHHcCCE-EEEEecCCCCCHHHH
Confidence            9999988875 788999999999976

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=1.1e-20  Score=138.67  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=83.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCC----C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQV----T   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v----~   74 (170)
                      +++|||||++.+..+|..|++++|++|+|||++++.+|..+..|+..+....  .++|++|||||+|+.+ .+..    .
T Consensus        45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~  123 (167)
T cd04161          45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN-ALLGADVIE  123 (167)
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC-CCCHHHHHH
Confidence            4799999999999999999999999999999999999999999999987654  6899999999999976 3321    1


Q ss_pred             HHHHHHHHHhcCCC-eEEEcccCCc------chhhhH
Q psy17235         75 EADMENFWSRRSSR-RFKPQEVVEP------QEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~~-~~~e~Sa~~~------~~v~~~  104 (170)
                      ...+..++++.+.+ ++++|||++|      .|+.++
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161         124 YLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             hcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            11223445444443 6777999998      889987

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01893 Miro1 Miro1 subfamily

Probab=99.83  E-value=9e-20  Score=133.42  Aligned_cols=105  Identities=20%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~   77 (170)
                      +++|||+|++.+...+..+++++|++++|||++++.||+.+. .|++.+....+++|+++||||+|+.+ .+..  ..++
T Consensus        49 ~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~  127 (166)
T cd01893          49 TTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD-GSSQAGLEEE  127 (166)
T ss_pred             EEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc-ccchhHHHHH
Confidence            469999999998888888899999999999999999999985 68888877667899999999999976 4432  2334


Q ss_pred             HHHHHHhcC-CCeEEEcccCCcchhhhHHH
Q psy17235         78 MENFWSRRS-SRRFKPQEVVEPQEVVEAEQ  106 (170)
Q Consensus        78 ~~~~a~~~~-~~~~~e~Sa~~~~~v~~~~~  106 (170)
                      +..++..++ ...|+++||+++.|+++.+.
T Consensus       128 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893         128 MLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             HHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            444555443 34688999999999998743

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.82  E-value=1.6e-19  Score=134.51  Aligned_cols=101  Identities=17%  Similarity=0.389  Sum_probs=84.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |++|||+|++.|..+|+.+++++|++++|||.+++.+++.+..|+.++....  .+.|++||+||+|+.+   .++.++.
T Consensus        54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~  130 (183)
T cd04152          54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEV  130 (183)
T ss_pred             EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHH
Confidence            4789999999999999999999999999999999999999999998887654  5799999999999865   4556666


Q ss_pred             HHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS-----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~-----~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+....+.     ..++++||++|.|+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152         131 EKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             HHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            655532211     24779999999999976

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.82  E-value=1.3e-19  Score=133.48  Aligned_cols=101  Identities=20%  Similarity=0.411  Sum_probs=84.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|..+++++|++++|||++++.+|..+..|+..+....  .++|++|||||+|+.+   ....+++
T Consensus        60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~  136 (173)
T cd04154          60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG---ALSEEEI  136 (173)
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc---CCCHHHH
Confidence            4789999999999999999999999999999999999999999988876533  6899999999999965   3355666


Q ss_pred             HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR----SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+.+..    ....|+++||++|.|+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  166 (173)
T cd04154         137 REALELDKISSHHWRIQPCSAVTGEGLLQG  166 (173)
T ss_pred             HHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence            6655432    1235889999999999976

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04114 Rab30 Rab30 subfamily

Probab=99.82  E-value=2.9e-19  Score=130.50  Aligned_cols=102  Identities=35%  Similarity=0.546  Sum_probs=91.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++||++|++.|...+..+++.+|++++|||++++.||+.+..|+..+.... .++|+++||||+|+.+ .+.+..+...
T Consensus        58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~  136 (169)
T cd04114          58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAE  136 (169)
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHH
Confidence            4689999999999999999999999999999999999999999999887766 5799999999999987 7788888888


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.+... ..++++||++|.|+.++
T Consensus       137 ~~~~~~~-~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114         137 EFSDAQD-MYYLETSAKESDNVEKL  160 (169)
T ss_pred             HHHHHcC-CeEEEeeCCCCCCHHHH
Confidence            8887776 46889999999999976

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.81  E-value=2.3e-19  Score=130.96  Aligned_cols=104  Identities=25%  Similarity=0.413  Sum_probs=91.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      +++|||||++.|..+++.+++.+|++++|||++++.||.... .|+..+....++.|+++||||+|+....         
T Consensus        50 l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  129 (171)
T cd00157          50 LGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKG  129 (171)
T ss_pred             EEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccC
Confidence            479999999999999999999999999999999999998774 6888888777889999999999987622         


Q ss_pred             -CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 -PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 -~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ..++.+++..++..++...|+++||++|.|+.+.
T Consensus       130 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (171)
T cd00157         130 KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEV  164 (171)
T ss_pred             CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHH
Confidence             2457888999999999867899999999999976

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.81  E-value=5.4e-19  Score=133.13  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=87.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||+|++.|..++..++.++|++|+|||++++.+|+.+..|+..+....  .++|++||+||+|+....+.+..++.
T Consensus        49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~  128 (198)
T cd04147          49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDA  128 (198)
T ss_pred             EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHH
Confidence            4789999999999999999999999999999999999999999999888765  57999999999998653466777666


Q ss_pred             HHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS-RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~-~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.+. ..+. .|+++||++|.|+.+.
T Consensus       129 ~~~~~~~~~~-~~~~~Sa~~g~gv~~l  154 (198)
T cd04147         129 LSTVELDWNC-GFVETSAKDNENVLEV  154 (198)
T ss_pred             HHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence            65554 3344 4778999999999987

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.80  E-value=8.1e-19  Score=127.02  Aligned_cols=102  Identities=28%  Similarity=0.432  Sum_probs=92.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||+|++.|..++..+++++|++++|||++++.||..+..|+..+....  .++|+++|+||+|+.. .+.+...+.
T Consensus        50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~  128 (164)
T cd04139          50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEA  128 (164)
T ss_pred             EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHH
Confidence            4789999999999999999999999999999999999999999999888764  6899999999999976 567788888


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++.+ ++++||+++.|+.+.
T Consensus       129 ~~~~~~~~~~-~~~~Sa~~~~gi~~l  153 (164)
T cd04139         129 ANLARQWGVP-YVETSAKTRQNVEKA  153 (164)
T ss_pred             HHHHHHhCCe-EEEeeCCCCCCHHHH
Confidence            8899988874 778999999999976

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN00023 GTP-binding protein; Provisional

Probab=99.80  E-value=2e-19  Score=143.83  Aligned_cols=87  Identities=20%  Similarity=0.304  Sum_probs=77.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-------------CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------------ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-------------~~~pvvlvgnK~Dl~   67 (170)
                      ++||||+|++.|..+++.||+++||+|+|||++++.||+++..|+.++....             .++|++|||||+||.
T Consensus        85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~  164 (334)
T PLN00023         85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA  164 (334)
T ss_pred             EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence            4799999999999999999999999999999999999999999999998763             258999999999997


Q ss_pred             CCC---CC---CCHHHHHHHHHhcCCC
Q psy17235         68 GTT---PQ---VTEADMENFWSRRSSR   88 (170)
Q Consensus        68 ~~~---~~---v~~~~~~~~a~~~~~~   88 (170)
                      . .   +.   +..+++++||+.+|+.
T Consensus       165 ~-~~~~r~~s~~~~e~a~~~A~~~g~l  190 (334)
T PLN00023        165 P-KEGTRGSSGNLVDAARQWVEKQGLL  190 (334)
T ss_pred             c-cccccccccccHHHHHHHHHHcCCC
Confidence            5 3   23   3689999999999974

>cd04157 Arl6 Arl6 subfamily

Probab=99.80  E-value=1.9e-19  Score=130.30  Aligned_cols=101  Identities=16%  Similarity=0.277  Sum_probs=80.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      +++|||||++.|..+|..+++++|++|+|||++++.+|..+..|+..+.+..    .++|+++||||+|+.+   ....+
T Consensus        47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~---~~~~~  123 (162)
T cd04157          47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD---ALTAV  123 (162)
T ss_pred             EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC---CCCHH
Confidence            4799999999999999999999999999999999999999999988876542    5799999999999865   22333


Q ss_pred             HHHHHHHh---cCCC-eEEEcccCCcchhhhH
Q psy17235         77 DMENFWSR---RSSR-RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~---~~~~-~~~e~Sa~~~~~v~~~  104 (170)
                      +.......   .+.+ .++++||++|.|+++.
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~  155 (162)
T cd04157         124 KITQLLGLENIKDKPWHIFASNALTGEGLDEG  155 (162)
T ss_pred             HHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence            32222111   1112 4789999999999987

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.79  E-value=6.8e-19  Score=127.41  Aligned_cols=100  Identities=23%  Similarity=0.430  Sum_probs=81.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|..+++++|++++|||.+++.+|..+..|+.++.+..  .++|+++|+||+|+..   .++.++.
T Consensus        46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~i  122 (160)
T cd04156          46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG---ALTAEEI  122 (160)
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc---CcCHHHH
Confidence            5799999999999999999999999999999999999999999988876543  6899999999999865   3344443


Q ss_pred             HHHH------HhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFW------SRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a------~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....      ...+. .+++|||++|.||+++
T Consensus       123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~  153 (160)
T cd04156         123 TRRFKLKKYCSDRDW-YVQPCSAVTGEGLAEA  153 (160)
T ss_pred             HHHcCCcccCCCCcE-EEEecccccCCChHHH
Confidence            3222      11222 4789999999999976

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG4252|consensus

Probab=99.79  E-value=1.5e-19  Score=131.79  Aligned_cols=102  Identities=28%  Similarity=0.403  Sum_probs=95.7

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      .+|||+||++|..+...||++|.+.++||+.||+.||+.+..|++++......+|.|+|-||+|+.+ ..++...+++.+
T Consensus        72 mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve-ds~~~~~evE~l  150 (246)
T KOG4252|consen   72 MLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE-DSQMDKGEVEGL  150 (246)
T ss_pred             HHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH-hhhcchHHHHHH
Confidence            5799999999999999999999999999999999999999999999999989999999999999998 889999999999


Q ss_pred             HHhcCCCeEEEcccCCcchhhhHH
Q psy17235         82 WSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        82 a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      |+.++.. ++.+|++..-||.++|
T Consensus       151 ak~l~~R-lyRtSvked~NV~~vF  173 (246)
T KOG4252|consen  151 AKKLHKR-LYRTSVKEDFNVMHVF  173 (246)
T ss_pred             HHHhhhh-hhhhhhhhhhhhHHHH
Confidence            9999986 4478999999998873

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.79  E-value=1.9e-18  Score=127.65  Aligned_cols=102  Identities=27%  Similarity=0.359  Sum_probs=91.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..++..++++++|||+++..+|+.+..|+..+.+..  .+.|+++|+||+|+.. .+.++.++.
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~  129 (180)
T cd04137          51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEG  129 (180)
T ss_pred             EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHH
Confidence            4789999999999999999999999999999999999999999988887754  5789999999999987 677888888


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++. .++++||+++.|+.+.
T Consensus       130 ~~~~~~~~~-~~~~~Sa~~~~gv~~l  154 (180)
T cd04137         130 KELAESWGA-AFLESSARENENVEEA  154 (180)
T ss_pred             HHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            888888886 4678999999999976

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.78  E-value=2.3e-18  Score=124.01  Aligned_cols=102  Identities=25%  Similarity=0.385  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||+||++.+..++..+++++|++++|||+++++|+..+..|+..+....  ..+|+++||||+|+.. .+.++.+++
T Consensus        49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~  127 (160)
T cd00876          49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEG  127 (160)
T ss_pred             EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHH
Confidence            4789999999999999999999999999999999999999999998887766  4899999999999987 678888999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++. .|+++||+++.|+.+.
T Consensus       128 ~~~~~~~~~-~~~~~S~~~~~~i~~l  152 (160)
T cd00876         128 KALAKEWGC-PFIETSAKDNINIDEV  152 (160)
T ss_pred             HHHHHHcCC-cEEEeccCCCCCHHHH
Confidence            999998885 5779999999999976

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00154 Rab Rab family

Probab=99.78  E-value=3e-18  Score=122.55  Aligned_cols=102  Identities=41%  Similarity=0.599  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+||+||++.+..++..+++++|++++|||++++++++.+..|+..+.... ++.|+++++||+|+.. ...+..++..
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~  129 (159)
T cd00154          51 LQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQ  129 (159)
T ss_pred             EEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHH
Confidence            4689999999999999999999999999999999999999999999998887 7899999999999975 5678889999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+. .++++||+++.|+.+.
T Consensus       130 ~~~~~~~~-~~~~~sa~~~~~i~~~  153 (159)
T cd00154         130 QFAKENGL-LFFETSAKTGENVEEL  153 (159)
T ss_pred             HHHHHcCC-eEEEEecCCCCCHHHH
Confidence            99998776 4778999999999976

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.78  E-value=2.1e-18  Score=127.28  Aligned_cols=100  Identities=23%  Similarity=0.413  Sum_probs=81.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||||++.|..+|..+++++|++++|||++++++|..+..|+..+.+..  .++|+++++||+|+.+   .++.++.
T Consensus        61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i  137 (174)
T cd04153          61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEI  137 (174)
T ss_pred             EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHH
Confidence            4799999999999999999999999999999999999999888888776543  5799999999999865   3444443


Q ss_pred             -HHHH----HhcCCCeEEEcccCCcchhhhH
Q psy17235         79 -ENFW----SRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 -~~~a----~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ..+.    +..++ .++++||++|.||+++
T Consensus       138 ~~~l~~~~~~~~~~-~~~~~SA~~g~gi~e~  167 (174)
T cd04153         138 SESLGLTSIRDHTW-HIQGCCALTGEGLPEG  167 (174)
T ss_pred             HHHhCcccccCCce-EEEecccCCCCCHHHH
Confidence             2222    12233 4789999999999987

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00879 Sar1 Sar1 subfamily

Probab=99.77  E-value=2.7e-18  Score=127.97  Aligned_cols=102  Identities=21%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..+|..+++++|++++|||++++.+|.....|+..+.+..  .+.|++++|||+|+..   .++.++.
T Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~  141 (190)
T cd00879          65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEEL  141 (190)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHH
Confidence            4689999999999999999999999999999999999998888988877544  5799999999999854   6777888


Q ss_pred             HHHHHhcC---------------CCeEEEcccCCcchhhhHH
Q psy17235         79 ENFWSRRS---------------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        79 ~~~a~~~~---------------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +.+.+...               ...+++|||++|.||++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~  183 (190)
T cd00879         142 RQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF  183 (190)
T ss_pred             HHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence            77775421               1248899999999999873

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.77  E-value=4.2e-18  Score=124.10  Aligned_cols=101  Identities=22%  Similarity=0.408  Sum_probs=84.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||.+++.++..+..|+..+.+..  .++|+++++||+|+..   .++.++.
T Consensus        52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~  128 (167)
T cd04160          52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEI  128 (167)
T ss_pred             EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHH
Confidence            4799999999999999999999999999999999999999999988876653  6899999999999865   4555666


Q ss_pred             HHHHHhc----C--CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR----S--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~----~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+....    +  ...++++||++|.|+++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160         129 KEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             HHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            6555432    1  125889999999999976

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.76  E-value=6.3e-18  Score=122.52  Aligned_cols=100  Identities=20%  Similarity=0.371  Sum_probs=77.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..+|..+++++|++++|||.+++.++.....|+..+.+..  .+.|+++|+||+|+.+   .....+.
T Consensus        45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~---~~~~~~i  121 (158)
T cd04151          45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG---ALSEAEI  121 (158)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC---CCCHHHH
Confidence            4799999999999999999999999999999999999988777766554332  5799999999999865   2233332


Q ss_pred             HH-HHH----hcCCCeEEEcccCCcchhhhH
Q psy17235         79 EN-FWS----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~-~a~----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .. +..    ..+. .++++||++|.||++.
T Consensus       122 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  151 (158)
T cd04151         122 SEKLGLSELKDRTW-SIFKTSAIKGEGLDEG  151 (158)
T ss_pred             HHHhCccccCCCcE-EEEEeeccCCCCHHHH
Confidence            22 211    1112 4889999999999976

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.76  E-value=1e-17  Score=127.57  Aligned_cols=100  Identities=23%  Similarity=0.448  Sum_probs=87.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||+|++.|..++..++++++++++|||++++.||..+..|+..+....+++|++++|||+|+.+  +.+..+. ..
T Consensus        60 i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~--~~~~~~~-~~  136 (215)
T PTZ00132         60 FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD--RQVKARQ-IT  136 (215)
T ss_pred             EEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc--ccCCHHH-HH
Confidence            47899999999999999999999999999999999999999999999987778899999999999865  3454444 45


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++ .|+++||++|.|+++.
T Consensus       137 ~~~~~~~-~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132        137 FHRKKNL-QYYDISAKSNYNFEKP  159 (215)
T ss_pred             HHHHcCC-EEEEEeCCCCCCHHHH
Confidence            7777776 5789999999999987

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.75  E-value=1.1e-17  Score=120.91  Aligned_cols=101  Identities=17%  Similarity=0.384  Sum_probs=82.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||+||++.|..++..+++++|++++|||++++.+|..+..|+..+....  ++.|+++++||+|+.. .  .+.++.
T Consensus        45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~--~~~~~~  121 (158)
T cd00878          45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG-A--LSVSEL  121 (158)
T ss_pred             EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc-c--cCHHHH
Confidence            4799999999999999999999999999999999999999999988876654  6899999999999876 2  244444


Q ss_pred             HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR----SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .......    ....++++||++|.|+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  151 (158)
T cd00878         122 IEKLGLEKILGRRWHIQPCSAVTGDGLDEG  151 (158)
T ss_pred             HHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence            4433321    1235889999999999976

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.75  E-value=7.3e-18  Score=125.65  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=84.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||||++.+..+|..|++++|++++|+|.+++.+|.....|+.++.+..  .+.|+++|+||+|+..   .++.++.
T Consensus        63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i  139 (184)
T smart00178       63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDEL  139 (184)
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHH
Confidence            4689999999999999999999999999999999999999998888876543  6899999999999864   5677776


Q ss_pred             HHHHHhc-----------CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR-----------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~-----------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .....-.           +...+++|||+++.|++++
T Consensus       140 ~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~  176 (184)
T smart00178      140 RYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG  176 (184)
T ss_pred             HHHcCCCcccccccccCCceeEEEEeecccCCChHHH
Confidence            5443211           2345899999999999987

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.74  E-value=6.5e-17  Score=119.81  Aligned_cols=105  Identities=20%  Similarity=0.371  Sum_probs=87.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||.+|+..++.+|+.||.++||+|+|+|.++++.+......+..+....  .++|++|++||+|+++   .++.++.
T Consensus        60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i  136 (175)
T PF00025_consen   60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEI  136 (175)
T ss_dssp             EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHH
T ss_pred             EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHH
Confidence            4799999999999999999999999999999999999999998888887654  7899999999999876   6777776


Q ss_pred             HHHHHhcC-----CCeEEEcccCCcchhhhH-HHHH
Q psy17235         79 ENFWSRRS-----SRRFKPQEVVEPQEVVEA-EQVQ  108 (170)
Q Consensus        79 ~~~a~~~~-----~~~~~e~Sa~~~~~v~~~-~~~~  108 (170)
                      .....-..     -...+.|||.+|+|+.++ .|+.
T Consensus       137 ~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~  172 (175)
T PF00025_consen  137 KEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLI  172 (175)
T ss_dssp             HHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred             HhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHH
Confidence            65443222     224778999999999988 4444

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.73  E-value=3.3e-17  Score=120.73  Aligned_cols=98  Identities=18%  Similarity=0.113  Sum_probs=79.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..+++++|++|+|||+++..++.....|.... .  .++|+++|+||+|+.+ .  ...+...+
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~-~--~~~~~~~~  142 (179)
T cd01890          69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPS-A--DPERVKQQ  142 (179)
T ss_pred             EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCc-C--CHHHHHHH
Confidence            469999999999999999999999999999999988887777665432 1  4789999999999864 2  22334556


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +++.++++  .++++||++|.|+++.
T Consensus       143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (179)
T cd01890         143 IEDVLGLDPSEAILVSAKTGLGVEDL  168 (179)
T ss_pred             HHHHhCCCcccEEEeeccCCCCHHHH
Confidence            77777764  4889999999999976

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG4423|consensus

Probab=99.72  E-value=4.3e-18  Score=124.70  Aligned_cols=104  Identities=26%  Similarity=0.423  Sum_probs=91.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +++||++||++|..|...||+.++|..+|||+|+..+|+.+..|.+++..-.     ..+|+|+.+||||.......-.+
T Consensus        77 lqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~  156 (229)
T KOG4423|consen   77 LQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEAT  156 (229)
T ss_pred             HHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhH
Confidence            4799999999999999999999999999999999999999999999876443     46889999999998762222235


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....++++++|+..++++|+|.+.|+.|+
T Consensus       157 ~~~d~f~kengf~gwtets~Kenkni~Ea  185 (229)
T KOG4423|consen  157 RQFDNFKKENGFEGWTETSAKENKNIPEA  185 (229)
T ss_pred             HHHHHHHhccCccceeeeccccccChhHH
Confidence            77889999999999999999999999987

>KOG0070|consensus

Probab=99.72  E-value=8.6e-17  Score=117.77  Aligned_cols=101  Identities=20%  Similarity=0.397  Sum_probs=85.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |++||.+||++++.+|++||++++++|+|.|.+|++.+..++..+..+....  .++|+++.+||.|+++   ..+..+.
T Consensus        63 f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~---als~~ei  139 (181)
T KOG0070|consen   63 FTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG---ALSAAEI  139 (181)
T ss_pred             EEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc---cCCHHHH
Confidence            5799999999999999999999999999999999999999998888887766  5899999999999987   5665555


Q ss_pred             HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.-.-..+    .++..|+|.+|+++.++
T Consensus       140 ~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg  169 (181)
T KOG0070|consen  140 TNKLGLHSLRSRNWHIQSTCAISGEGLYEG  169 (181)
T ss_pred             HhHhhhhccCCCCcEEeeccccccccHHHH
Confidence            444433332    46888999999999977

>KOG0073|consensus

Probab=99.66  E-value=1.2e-15  Score=109.75  Aligned_cols=105  Identities=20%  Similarity=0.387  Sum_probs=85.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH-
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD-   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~-   77 (170)
                      |+|||++||..+++.|+.||..+||+|+|+|++|+..|+.....+..+....  ...|++|++||.|+++   .++.++ 
T Consensus        62 L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~---~l~~~~i  138 (185)
T KOG0073|consen   62 LNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG---ALSLEEI  138 (185)
T ss_pred             EEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc---ccCHHHH
Confidence            5799999999999999999999999999999999999998887777665433  5789999999999975   444443 


Q ss_pred             -----HHHHHHhcCCCeEEEcccCCcchhhhH-HHHHH
Q psy17235         78 -----MENFWSRRSSRRFKPQEVVEPQEVVEA-EQVQQ  109 (170)
Q Consensus        78 -----~~~~a~~~~~~~~~e~Sa~~~~~v~~~-~~~~~  109 (170)
                           ...++++..++ .+.|||.+|+++.++ .|+..
T Consensus       139 ~~~~~L~~l~ks~~~~-l~~cs~~tge~l~~gidWL~~  175 (185)
T KOG0073|consen  139 SKALDLEELAKSHHWR-LVKCSAVTGEDLLEGIDWLCD  175 (185)
T ss_pred             HHhhCHHHhccccCce-EEEEeccccccHHHHHHHHHH
Confidence                 34555666664 668999999999988 44443

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.66  E-value=1.2e-15  Score=109.15  Aligned_cols=101  Identities=18%  Similarity=0.313  Sum_probs=78.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||||++.|..++..+++++|++++|+|++++.++.....|+..+....  .+.|+++|+||+|+.+ ...  ..+.
T Consensus        46 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~-~~~--~~~~  122 (159)
T cd04159          46 LKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG-ALS--VDEL  122 (159)
T ss_pred             EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CcC--HHHH
Confidence            4799999999999999999999999999999999999998888888776533  6889999999999865 322  2222


Q ss_pred             HHHHH--h--cCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS--R--RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~--~--~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .....  .  .....++++|++++.|+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (159)
T cd04159         123 IEQMNLKSITDREVSCYSISCKEKTNIDIV  152 (159)
T ss_pred             HHHhCcccccCCceEEEEEEeccCCChHHH
Confidence            21111  0  11135778999999999976

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.64  E-value=2.4e-15  Score=114.32  Aligned_cols=104  Identities=25%  Similarity=0.320  Sum_probs=83.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC--------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN-AASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT--------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~-~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~--------   70 (170)
                      +.+|||+||++|..+++.|+.+++++++|||.++ ..+++....|...+.... .+.|+++||||+|+....        
T Consensus        56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~  135 (219)
T COG1100          56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILN  135 (219)
T ss_pred             EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHh
Confidence            4689999999999999999999999999999999 566677789999998887 479999999999998731        


Q ss_pred             ---CCCCHHHHHHHHHhc--CCCeEEEcccC--CcchhhhH
Q psy17235         71 ---PQVTEADMENFWSRR--SSRRFKPQEVV--EPQEVVEA  104 (170)
Q Consensus        71 ---~~v~~~~~~~~a~~~--~~~~~~e~Sa~--~~~~v~~~  104 (170)
                         +.+........+...  ..+.++++|++  ++.+|.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~  176 (219)
T COG1100         136 QLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL  176 (219)
T ss_pred             hhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence               344444444444433  23348899999  99999976

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.64  E-value=4.5e-16  Score=110.73  Aligned_cols=94  Identities=15%  Similarity=0.020  Sum_probs=73.7

Q ss_pred             eEEecCCcc-----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          2 QLWDTGGME-----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         2 ~iwDt~G~e-----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      .+|||||+.     .|..+.+ .++++|++++|||++++.|+.. ..|....     ..|+++|+||+|+.+  +.+..+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~--~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAE--ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCC--cccCHH
Confidence            479999982     3444544 5899999999999999999865 3454321     249999999999864  355677


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++.++++..+...++++||++|.|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  136 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEAL  136 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence            8888888888766889999999999976

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.64  E-value=2.5e-15  Score=110.12  Aligned_cols=98  Identities=14%  Similarity=0.297  Sum_probs=78.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||++|+..+...+..+++++|++++|||++++.+|.....|+..+....  .++|+++++||+|+.+   ....+  
T Consensus        60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~--  134 (173)
T cd04155          60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT---AAPAE--  134 (173)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc---CCCHH--
Confidence            4689999999999999999999999999999999999998888877765543  5799999999999865   22222  


Q ss_pred             HHHHHhcCCC-------eEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSR-------RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~-------~~~e~Sa~~~~~v~~~  104 (170)
                       .+....+..       .++++||++|+|++++
T Consensus       135 -~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~  166 (173)
T cd04155         135 -EIAEALNLHDLRDRTWHIQACSAKTGEGLQEG  166 (173)
T ss_pred             -HHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence             333334432       4679999999999987

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.63  E-value=3.5e-15  Score=108.79  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=76.6

Q ss_pred             CeEEecCCcc----ccccchhhhcc---CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGME----RVASITSSYYK---FAEAAILVFSLDNA-ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e----~~~~~~~~~~~---~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~   69 (170)
                      +.+|||||+.    .+..++..+++   .+|++++|+|.+++ ++++.+..|.+.+....   .+.|+++|+||+|+.+ 
T Consensus        50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~-  128 (170)
T cd01898          50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD-  128 (170)
T ss_pred             EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC-
Confidence            4799999973    22334445444   59999999999999 89999999999887764   4789999999999976 


Q ss_pred             CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...+ .+....+........++++||+++.|+.+.
T Consensus       129 ~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  162 (170)
T cd01898         129 EEEL-FELLKELLKELWGKPVFPISALTGEGLDEL  162 (170)
T ss_pred             chhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence            3333 344445555532335778999999999976

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0075|consensus

Probab=99.62  E-value=2.9e-15  Score=106.09  Aligned_cols=100  Identities=19%  Similarity=0.307  Sum_probs=79.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||.|||++|++||..|+++++++++|+|..|++.+...+..+..+....  ..+|+++.|||.|+++   ..+..+.
T Consensus        67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~---AL~~~~l  143 (186)
T KOG0075|consen   67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG---ALSKIAL  143 (186)
T ss_pred             EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc---cccHHHH
Confidence            3589999999999999999999999999999999999998887777765444  7899999999999987   4554443


Q ss_pred             HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+-..     +... ..+..|+++..|++..
T Consensus       144 i~rmgL~sitdREv-cC~siScke~~Nid~~  173 (186)
T KOG0075|consen  144 IERMGLSSITDREV-CCFSISCKEKVNIDIT  173 (186)
T ss_pred             HHHhCccccccceE-EEEEEEEcCCccHHHH
Confidence            32221     1122 3556799999999966

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.61  E-value=3.1e-15  Score=109.01  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             CeEEecCCcccccc---------chhhhccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS---------ITSSYYKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~---------~~~~~~~~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      ++||||||+.....         ........+|++++|+|.+++.++  +....|+..+....++.|+++|+||+|+.+ 
T Consensus        49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~-  127 (168)
T cd01897          49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT-  127 (168)
T ss_pred             EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc-
Confidence            47999999843110         001112346899999999998754  666788888876556899999999999976 


Q ss_pred             CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.+..  ..++++..+. .++++||++|.|+++.
T Consensus       128 ~~~~~~--~~~~~~~~~~-~~~~~Sa~~~~gi~~l  159 (168)
T cd01897         128 FEDLSE--IEEEEELEGE-EVLKISTLTEEGVDEV  159 (168)
T ss_pred             hhhHHH--HHHhhhhccC-ceEEEEecccCCHHHH
Confidence            444443  4555554444 5789999999999986

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.60  E-value=4.6e-15  Score=107.24  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC--CCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP--QVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--~v~~   75 (170)
                      +++|||||++.|......+++++|++++|+|+++   +++++.+. +   +... ...|+++|+||+|+.+ ..  ....
T Consensus        53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~-~---~~~~-~~~~~ilv~NK~Dl~~-~~~~~~~~  126 (164)
T cd04171          53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE-I---LELL-GIKRGLVVLTKADLVD-EDWLELVE  126 (164)
T ss_pred             EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH-H---HHHh-CCCcEEEEEECccccC-HHHHHHHH
Confidence            4799999999997777778999999999999987   45554432 1   1111 2349999999999975 21  1222


Q ss_pred             HHHHHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRR--SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..++.+..  ....++++||+++.|+++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171         127 EEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence            3444444442  2235788999999999976

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG3883|consensus

Probab=99.59  E-value=9.3e-15  Score=104.23  Aligned_cols=102  Identities=22%  Similarity=0.337  Sum_probs=88.2

Q ss_pred             CeEEecCCcccc-ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      |.|+||+|...+ ..+-.+|+.-+|++++|||..|++||+.+.-.-.+|.+..  ..+|+|++|||+|+.+ .+.+..+-
T Consensus        62 l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~  140 (198)
T KOG3883|consen   62 LRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDV  140 (198)
T ss_pred             EEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHH
Confidence            579999998877 6688999999999999999999999998866555565554  6899999999999988 89999999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++.||+.-....| +.+|.+..++.+.
T Consensus       141 A~~Wa~rEkvkl~-eVta~dR~sL~ep  166 (198)
T KOG3883|consen  141 AQIWAKREKVKLW-EVTAMDRPSLYEP  166 (198)
T ss_pred             HHHHHhhhheeEE-EEEeccchhhhhH
Confidence            9999999888666 6788888888876

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.58  E-value=7.3e-15  Score=110.21  Aligned_cols=99  Identities=9%  Similarity=0.047  Sum_probs=72.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||+++. .+.....|+..+..  .++|+++|+||+|+.. .+. ...++..
T Consensus        67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~-~~~~~~~~~~~  142 (194)
T cd01891          67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPD-ARPEEVVDEVF  142 (194)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH--cCCCEEEEEECCCCCC-CCHHHHHHHHH
Confidence            47999999999999999999999999999999874 23333445544433  4789999999999965 222 2234455


Q ss_pred             HHHHhc-------CCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRR-------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~-------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+....       ++ .++++||++|.|+.+-
T Consensus       143 ~~~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         143 DLFIELGATEEQLDF-PVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHHhCCccccCcc-CEEEeehhcccccccc
Confidence            554332       44 4778999999999765

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0076|consensus

Probab=99.58  E-value=3.1e-15  Score=108.55  Aligned_cols=101  Identities=24%  Similarity=0.458  Sum_probs=84.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||.+||+..+++|..||..+||+|+++|.+|++.|+....-++.+....  .++|+++.+||.|+.+   .++..+.
T Consensus        71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~---~~~~~El  147 (197)
T KOG0076|consen   71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN---AMEAAEL  147 (197)
T ss_pred             eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh---hhhHHHH
Confidence            4689999999999999999999999999999999999998888777776655  8999999999999977   5555554


Q ss_pred             HHHHH---hcC--CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS---RRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~---~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      .....   ..+  -..|..+||.+|+||.++
T Consensus       148 ~~~~~~~e~~~~rd~~~~pvSal~gegv~eg  178 (197)
T KOG0076|consen  148 DGVFGLAELIPRRDNPFQPVSALTGEGVKEG  178 (197)
T ss_pred             HHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence            44333   222  135889999999999987

>KOG1673|consensus

Probab=99.56  E-value=2.2e-14  Score=102.61  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCC----CCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTP----QVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~----~v~~   75 (170)
                      +.|||.+||+++..+.+..+.++-+++++||+|.+.++.++..|+++.+..+ ..+| |+||+|.|+--+..    .--.
T Consensus        71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~  149 (205)
T KOG1673|consen   71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETIS  149 (205)
T ss_pred             EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999988887 4455 67899999743111    1112


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEAEQ  106 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~  106 (170)
                      .+++.+|+..+++.|+ ||+..+.||+..|.
T Consensus       150 ~qar~YAk~mnAsL~F-~Sts~sINv~KIFK  179 (205)
T KOG1673|consen  150 RQARKYAKVMNASLFF-CSTSHSINVQKIFK  179 (205)
T ss_pred             HHHHHHHHHhCCcEEE-eeccccccHHHHHH
Confidence            4578899999998775 79989989886543

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.55  E-value=4.2e-14  Score=114.64  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             CeEEecCCccc----cccchhh---hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMER----VASITSS---YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~~---~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.+|||||...    ...+...   +++.++++++|+|++++++++.+..|..++..+.   .+.|++||+||+|+.+ .
T Consensus       208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~-~  286 (335)
T PRK12299        208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD-E  286 (335)
T ss_pred             EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC-c
Confidence            47899999632    2234444   4557999999999999889999999999998775   3789999999999976 4


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+..++...++...+.+ ++++||+++.||++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~-i~~iSAktg~GI~eL  319 (335)
T PRK12299        287 EEEREKRAALELAALGGP-VFLISAVTGEGLDEL  319 (335)
T ss_pred             hhHHHHHHHHHHHhcCCC-EEEEEcCCCCCHHHH
Confidence            445555566666656554 678999999999976

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.55  E-value=1e-14  Score=100.72  Aligned_cols=65  Identities=42%  Similarity=0.609  Sum_probs=56.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH---HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~---~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +++||++|++.+...+...+.++|++++|||++++.||+.+.   .|+..+....+++|++|||||.|
T Consensus        52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            479999999999888888899999999999999999999874   56777776667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0071|consensus

Probab=99.54  E-value=6.5e-14  Score=98.62  Aligned_cols=101  Identities=19%  Similarity=0.371  Sum_probs=83.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |.+||.+||++.+.+|++||.++.|+|||.|..+++..+.+++.+..+.+..  .++|++|.+||.|+++   ..++.|+
T Consensus        63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~---A~~pqei  139 (180)
T KOG0071|consen   63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD---AMKPQEI  139 (180)
T ss_pred             EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc---ccCHHHH
Confidence            5789999999999999999999999999999999999999988877776555  7899999999999987   5666666


Q ss_pred             HHHHHh---cCC-CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSR---RSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~---~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+..-   .+- .....|+|.+|.++.+.
T Consensus       140 ~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen  140 QDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             HHHhccccccCCccEeeccccccchhHHHH
Confidence            554422   121 35678899999998876

>KOG0096|consensus

Probab=99.53  E-value=7.8e-15  Score=107.89  Aligned_cols=100  Identities=23%  Similarity=0.476  Sum_probs=84.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |..|||+|||.+..+++-||-++.+.|++||++.+-++.++.+|..++.+.+.++|+|++|||.|..+  +.+. .....
T Consensus        61 f~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~--r~~k-~k~v~  137 (216)
T KOG0096|consen   61 FNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA--RKVK-AKPVS  137 (216)
T ss_pred             EEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc--cccc-cccce
Confidence            46899999999999999999999999999999999999999999999999999999999999999876  2321 22222


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +-+..++ .|++.||+++-|....
T Consensus       138 ~~rkknl-~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen  138 FHRKKNL-QYYEISAKSNYNFERP  160 (216)
T ss_pred             eeecccc-eeEEeecccccccccc
Confidence            3344454 4668899999999877

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.52  E-value=1.7e-13  Score=98.54  Aligned_cols=96  Identities=9%  Similarity=0.095  Sum_probs=72.6

Q ss_pred             CeEEecCCcccccc------chhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS------ITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~------~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||++.+..      ++..++.  ++|++++|+|.+++.+..   .|...+..  .+.|+++|+||+|+.+ ...
T Consensus        45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~--~~~~~iiv~NK~Dl~~-~~~  118 (158)
T cd01879          45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE--LGLPVVVALNMIDEAE-KRG  118 (158)
T ss_pred             EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH--cCCCEEEEEehhhhcc-ccc
Confidence            46999999987764      4666775  999999999999865533   34444443  3689999999999976 444


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..+ ...++..++.+ ++++||.++.|+.+.
T Consensus       119 ~~~~-~~~~~~~~~~~-~~~iSa~~~~~~~~l  148 (158)
T cd01879         119 IKID-LDKLSELLGVP-VVPTSARKGEGIDEL  148 (158)
T ss_pred             chhh-HHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence            4433 45777777775 668999999999976

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.51  E-value=1.3e-13  Score=97.89  Aligned_cols=102  Identities=25%  Similarity=0.306  Sum_probs=81.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhCC-CCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAE-NAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~-~Sf~~~~-~~~~~i~~~~~-~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.+|||||++.+..++..+++.+++++.++|++.. .++.... .|...+..... +.|+++++||+|+.. .. +....
T Consensus        52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~-~~~~~  129 (161)
T TIGR00231        52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD-AK-LKTHV  129 (161)
T ss_pred             EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc-ch-hhHHH
Confidence            46899999999999999999999999999999988 8887775 78777776664 899999999999976 33 34344


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ...+.. .+...++++||+++.|+.+.+
T Consensus       130 ~~~~~~-~~~~~~~~~sa~~~~gv~~~~  156 (161)
T TIGR00231       130 AFLFAK-LNGEPIIPLSAETGKNIDSAF  156 (161)
T ss_pred             HHHHhh-ccCCceEEeecCCCCCHHHHH
Confidence            444444 444458899999999999763

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.51  E-value=2.4e-13  Score=95.31  Aligned_cols=103  Identities=31%  Similarity=0.477  Sum_probs=78.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHH--HhhCCCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i--~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||++|+..+...+..+++.+|++++|||++++.++.....|....  .....+.|+++++||+|+.. .........
T Consensus        47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~-~~~~~~~~~  125 (157)
T cd00882          47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE-ERVVSEEEL  125 (157)
T ss_pred             EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc-ccchHHHHH
Confidence            469999999998888888999999999999999999999998873222  22237899999999999876 333332221


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...........++++|+.++.++.+.
T Consensus       126 ~~~~~~~~~~~~~~~s~~~~~~i~~~  151 (157)
T cd00882         126 AEQLAKELGVPYFETSAKTGENVEEL  151 (157)
T ss_pred             HHHHHhhcCCcEEEEecCCCCChHHH
Confidence            23333344456889999999999876

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.51  E-value=7.8e-14  Score=120.68  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |+||||||++.|...+..+++.+|++|+|||.++..+++....|...+.   .++|+++|+||+|+.+ .  .......+
T Consensus        72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~-~--~~~~~~~e  145 (595)
T TIGR01393        72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPS-A--DPERVKKE  145 (595)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCc-c--CHHHHHHH
Confidence            4799999999999999999999999999999999877777777754432   3689999999999865 2  22333456


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      ++..++..  .++++||++|.||++.
T Consensus       146 l~~~lg~~~~~vi~vSAktG~GI~~L  171 (595)
T TIGR01393       146 IEEVIGLDASEAILASAKTGIGIEEI  171 (595)
T ss_pred             HHHHhCCCcceEEEeeccCCCCHHHH
Confidence            66666764  4788999999999975

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01878 HflX HflX subfamily

Probab=99.50  E-value=9.2e-14  Score=104.82  Aligned_cols=96  Identities=16%  Similarity=0.040  Sum_probs=71.1

Q ss_pred             CeEEecCCccc---------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMER---------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~---------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.+|||||...         |...+ ..+.++|++++|+|.+++.++..+..|...+.... .+.|+++|+||+|+.. .
T Consensus        91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~-~  168 (204)
T cd01878          91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD-D  168 (204)
T ss_pred             EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC-h
Confidence            47999999732         22222 23678999999999999999998888887776654 5789999999999865 2


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+.     ..+...+. .++++||+++.|+.++
T Consensus       169 ~~~~-----~~~~~~~~-~~~~~Sa~~~~gi~~l  196 (204)
T cd01878         169 EELE-----ERLEAGRP-DAVFISAKTGEGLDEL  196 (204)
T ss_pred             HHHH-----HHhhcCCC-ceEEEEcCCCCCHHHH
Confidence            2221     33444444 4778999999999976

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.49  E-value=1.4e-13  Score=107.25  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             cccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235         10 ERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR   88 (170)
Q Consensus        10 e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~   88 (170)
                      ++|..+.+.+++++|++++|||+++|. ||+.+..|+..+..  .++|++||+||+||.+ .+.+..+.+..+. ..|.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~-~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLD-DEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCC-CHHHHHHHHHHHH-HCCCe
Confidence            678899999999999999999999988 99999999976643  5899999999999976 5566555565555 46764


Q ss_pred             eEEEcccCCcchhhhHH
Q psy17235         89 RFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        89 ~~~e~Sa~~~~~v~~~~  105 (170)
                       ++++||++|.|+++.+
T Consensus       100 -v~~~SAktg~gi~eLf  115 (245)
T TIGR00157       100 -VLMTSSKNQDGLKELI  115 (245)
T ss_pred             -EEEEecCCchhHHHHH
Confidence             6789999999999763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK04213 GTP-binding protein; Provisional

Probab=99.48  E-value=2.4e-14  Score=107.65  Aligned_cols=94  Identities=18%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             CeEEecCC-----------ccccccchhhhcc-CC---cEEEEEEeCCChhhHHHH-HHH------------HHHHHhhC
Q psy17235          1 MQLWDTGG-----------MERVASITSSYYK-FA---EAAILVFSLDNAASFHVL-SQH------------LLEIVTYA   52 (170)
Q Consensus         1 l~iwDt~G-----------~e~~~~~~~~~~~-~a---d~iilv~D~t~~~Sf~~~-~~~------------~~~i~~~~   52 (170)
                      +++|||||           ++.|..++..|+. ++   +++++|+|.++   +..+ ..|            +..+..  
T Consensus        54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~--  128 (201)
T PRK04213         54 FILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKS---FIEIIERWEGRGEIPIDVEMFDFLRE--  128 (201)
T ss_pred             eEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcc---ccccccccccCCCcHHHHHHHHHHHH--
Confidence            47999999           6778888888875 44   56666666543   3322 223            111111  


Q ss_pred             CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC--C------eEEEcccCCcchhhhH
Q psy17235         53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS--R------RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~--~------~~~e~Sa~~~~~v~~~  104 (170)
                      .++|+++|+||+|+.+ .+   .+...++++.++.  +      .++++||++| |+++.
T Consensus       129 ~~~p~iiv~NK~Dl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l  183 (201)
T PRK04213        129 LGIPPIVAVNKMDKIK-NR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEEL  183 (201)
T ss_pred             cCCCeEEEEECccccC-cH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHH
Confidence            4799999999999965 22   4566777777776  2      3789999999 99976

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.47  E-value=2.3e-13  Score=98.87  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC-HH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT-EA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~-~~   76 (170)
                      +.+|||||++.|..++..+++.+|++++|+|.++.   +++..+.    .+..  .+.|+++|+||+|+.. ...-. .+
T Consensus        52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~----~~~~--~~~p~ivv~NK~Dl~~-~~~~~~~~  124 (168)
T cd01887          52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIK----LAKA--ANVPFIVALNKIDKPN-ANPERVKN  124 (168)
T ss_pred             EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHH----HHHH--cCCCEEEEEEceeccc-ccHHHHHH
Confidence            47999999999999999999999999999999984   4443332    2222  4789999999999865 21100 01


Q ss_pred             HHHHHHH----hcC-CCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWS----RRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~----~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....+..    ..+ ...++++||++|.|+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887         125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             HHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            1111111    111 235789999999999976

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.47  E-value=2.6e-13  Score=98.91  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=69.4

Q ss_pred             EEecCCcc-----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          3 LWDTGGME-----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         3 iwDt~G~e-----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +|||||+.     .+..+. ..++++|++++|||.++..++.  ..|+..+   ..+.|+++++||+|+.+    ...+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl~~----~~~~~  110 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDMPD----ADVAA  110 (158)
T ss_pred             cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---cCCCCeEEEEEccccCc----ccHHH
Confidence            69999973     222222 2378999999999999998873  3455443   24679999999999854    34567


Q ss_pred             HHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++...++ ..++++||++++|+++.
T Consensus       111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l  138 (158)
T PRK15467        111 TRKLLLETGFEEPIFELNSHDPQSVQQL  138 (158)
T ss_pred             HHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence            7788888876 35778999999999976

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.44  E-value=6.2e-12  Score=105.51  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=69.2

Q ss_pred             CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++|||||+..+...        ...+++++|++++|||.+++.+++..  |+..+..  .+.|+++|+||+|+.. .  
T Consensus       253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~-~--  325 (442)
T TIGR00450       253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKI-N--  325 (442)
T ss_pred             EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCC-c--
Confidence            469999998665432        24678999999999999999998875  7766543  4789999999999965 2  


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                          +...+++.++.+ ++++||++ .||++.
T Consensus       326 ----~~~~~~~~~~~~-~~~vSak~-~gI~~~  351 (442)
T TIGR00450       326 ----SLEFFVSSKVLN-SSNLSAKQ-LKIKAL  351 (442)
T ss_pred             ----chhhhhhhcCCc-eEEEEEec-CCHHHH
Confidence                223456666765 55789998 588876

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.43  E-value=6e-13  Score=97.24  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             CeEEecCCccc----cccch---hhhccCCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhC--------CCCeEEE
Q psy17235          1 MQLWDTGGMER----VASIT---SSYYKFAEAAILVFSLDNA------ASFHVLSQHLLEIVTYA--------ENAKIFL   59 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~---~~~~~~ad~iilv~D~t~~------~Sf~~~~~~~~~i~~~~--------~~~pvvl   59 (170)
                      +.||||||...    ...++   ..+++++|++++|+|.+++      .++.....|...+....        .+.|+++
T Consensus        46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  125 (176)
T cd01881          46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY  125 (176)
T ss_pred             EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence            47999999732    22332   3357889999999999998      57888888888776543        3789999


Q ss_pred             EeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        60 vgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |+||+|+.. ...+............+ ..++++||+++.|+++.
T Consensus       126 v~NK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l  168 (176)
T cd01881         126 VLNKIDLDD-AEELEEELVRELALEEG-AEVVPISAKTEEGLDEL  168 (176)
T ss_pred             EEEchhcCc-hhHHHHHHHHHHhcCCC-CCEEEEehhhhcCHHHH
Confidence            999999976 44433332233333333 45788999999999976

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.42  E-value=1e-12  Score=106.37  Aligned_cols=101  Identities=12%  Similarity=0.107  Sum_probs=76.7

Q ss_pred             CeEEecCCccc----cccchhhhcc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMER----VASITSSYYK---FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~~~~~---~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      ++||||||...    ...+...+++   .++++++|+|+++.   ++++.+..|..++..+.   .+.|++||+||+|+.
T Consensus       207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence            47899999753    2234555544   69999999999987   78888888988887664   478999999999997


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      + ... ..+..+.+++..+. .++++||+++.||++.
T Consensus       287 ~-~~~-~~~~~~~l~~~~~~-~vi~iSAktg~GI~eL  320 (329)
T TIGR02729       287 D-EEE-LAELLKELKKALGK-PVFPISALTGEGLDEL  320 (329)
T ss_pred             C-hHH-HHHHHHHHHHHcCC-cEEEEEccCCcCHHHH
Confidence            6 322 23445566666665 4778999999999976

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0074|consensus

Probab=99.42  E-value=3.5e-13  Score=95.10  Aligned_cols=101  Identities=18%  Similarity=0.344  Sum_probs=80.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |.+||++||...+..|..||.+.|++|+|.|.+|...|+.+...+-++....  ..+|+.+.+||.|+..   ..+.++.
T Consensus        64 LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt---aa~~eei  140 (185)
T KOG0074|consen   64 LNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT---AAKVEEI  140 (185)
T ss_pred             EEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh---hcchHHH
Confidence            5799999999999999999999999999999999999999988777776555  6899999999999865   3333333


Q ss_pred             HHHHHhcC----CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRS----SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~----~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..-+.-.+    ..+..+|||.+++++...
T Consensus       141 a~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen  141 ALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             HHhcchhhhhhceEEeeeCccccccCccCc
Confidence            22222222    246889999999999876

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.42  E-value=1.1e-12  Score=113.18  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=70.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.|||||||+.|..++..++..+|++++|||.++   +++++.+.    ....  .++|+++++||+|+.+    ...++
T Consensus       137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~----~~~~--~~vPiIVviNKiDl~~----~~~e~  206 (587)
T TIGR00487       137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAIS----HAKA--ANVPIIVAINKIDKPE----ANPDR  206 (587)
T ss_pred             EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECccccc----CCHHH
Confidence            4799999999999999999999999999999987   44554332    1111  4799999999999864    23344


Q ss_pred             HHHHHHhcCC--------CeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSS--------RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~  104 (170)
                      ........+.        ..|+++||++|.|+++.
T Consensus       207 v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL  241 (587)
T TIGR00487       207 VKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL  241 (587)
T ss_pred             HHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence            4444443332        35889999999999976

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.42  E-value=1.3e-12  Score=110.63  Aligned_cols=102  Identities=18%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             CeEEecCCc----------cccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGM----------ERVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~----------e~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      ++||||||.          +.|..+. ..+++++|++++|||.+++.|+..+. ++..+..  .+.|+|||+||+|+.+.
T Consensus       261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDE  337 (472)
T ss_pred             EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCh
Confidence            368999995          3444443 34678999999999999999988774 4444443  47999999999999651


Q ss_pred             CC-CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 TP-QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~-~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .. .....+............++++||++|.||++.+
T Consensus       338 ~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf  374 (472)
T PRK03003        338 DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLV  374 (472)
T ss_pred             hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHH
Confidence            11 1111222221222233356789999999999864

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=2.3e-12  Score=94.61  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=78.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.++|||||++|..||..+.+++.|.|++.|.+.+..| .....+..+... ..+|++|..||.|+.+   .-++++.++
T Consensus        70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~---a~ppe~i~e  144 (187)
T COG2229          70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFD---ALPPEKIRE  144 (187)
T ss_pred             EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCC---CCCHHHHHH
Confidence            46899999999999999999999999999999999999 444444443333 2399999999999987   667777776


Q ss_pred             HHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.+... -...++.+|..+.++.+.
T Consensus       145 ~l~~~~~~~~vi~~~a~e~~~~~~~  169 (187)
T COG2229         145 ALKLELLSVPVIEIDATEGEGARDQ  169 (187)
T ss_pred             HHHhccCCCceeeeecccchhHHHH
Confidence            666552 234668899999888876

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.40  E-value=1e-12  Score=107.31  Aligned_cols=95  Identities=15%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             CeEEecCCc---------cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGM---------ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~---------e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.||||+|.         +.|...+. .+.+||++++|||.+++.+++.+..|...+.... .+.|+++|+||+|+.. .
T Consensus       239 i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~-~  316 (351)
T TIGR03156       239 VLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD-E  316 (351)
T ss_pred             EEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC-h
Confidence            469999997         22333222 4789999999999999999988877766655544 5789999999999865 2


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+     .....  +.+.++.+||++|.|+++.
T Consensus       317 ~~v-----~~~~~--~~~~~i~iSAktg~GI~eL  343 (351)
T TIGR03156       317 PRI-----ERLEE--GYPEAVFVSAKTGEGLDLL  343 (351)
T ss_pred             HhH-----HHHHh--CCCCEEEEEccCCCCHHHH
Confidence            222     11111  2234778999999999975

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.40  E-value=6e-12  Score=105.87  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||.+.+...        ...+++++|++++|||.+++.+++....|..     ..+.|+++|+||+|+.. ...
T Consensus       265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~-~~~  338 (449)
T PRK05291        265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTG-EID  338 (449)
T ss_pred             EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccc-cch
Confidence            478999998765432        2346889999999999999999887655543     35789999999999975 332


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.        ...+ ..++++||++|.|+++.
T Consensus       339 ~~--------~~~~-~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        339 LE--------EENG-KPVIRISAKTGEGIDEL  361 (449)
T ss_pred             hh--------hccC-CceEEEEeeCCCCHHHH
Confidence            22        2223 35778999999999986

>KOG1660|consensus

Probab=99.40  E-value=1.5e-12  Score=103.17  Aligned_cols=73  Identities=58%  Similarity=0.861  Sum_probs=68.2

Q ss_pred             CcchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhhcC
Q psy17235         97 EPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTS  169 (170)
Q Consensus        97 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  169 (170)
                      .+..|..++.-++.+|+.|+++++.+++++.+|+.||+.||+|||.+++|||+||+|.+++.|++|+..||++
T Consensus       327 knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~~~lk~~  399 (399)
T KOG1660|consen  327 KNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCLLALKEI  399 (399)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHhhcC
Confidence            3556777777899999999999999999999999999999999999999999999999999999999999974

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.38  E-value=2.6e-12  Score=111.39  Aligned_cols=98  Identities=18%  Similarity=0.115  Sum_probs=75.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |+||||||++.|...+..+++.+|++|+|+|.++....+....|.....   .++|+++|+||+|+.+ ..  ......+
T Consensus        76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~-a~--~~~v~~e  149 (600)
T PRK05433         76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPA-AD--PERVKQE  149 (600)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCc-cc--HHHHHHH
Confidence            4799999999999999999999999999999999766666666654322   4789999999999865 21  2223344


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +...+++.  .++.+||++|.|+.+.
T Consensus       150 i~~~lg~~~~~vi~iSAktG~GI~~L  175 (600)
T PRK05433        150 IEDVIGIDASDAVLVSAKTGIGIEEV  175 (600)
T ss_pred             HHHHhCCCcceEEEEecCCCCCHHHH
Confidence            55555654  3788999999999865

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.38  E-value=2.9e-12  Score=110.64  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.|||||||+.|..++..+++.+|++++|||.++   +++++.+..+    ..  .++|+++++||+|+..
T Consensus        71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIP  135 (590)
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccc
Confidence            3589999999999999999999999999999997   6777665432    11  3789999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01894 EngA1 EngA1 subfamily

Probab=99.38  E-value=2.4e-12  Score=92.14  Aligned_cols=95  Identities=14%  Similarity=0.031  Sum_probs=66.8

Q ss_pred             CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||+..+..        .+..+++++|++++|+|.+++.+.... .....+..  .+.|+++|+||+|+.+ ...
T Consensus        47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~-~~~  122 (157)
T cd01894          47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIK-EED  122 (157)
T ss_pred             EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCC-hHH
Confidence            46999999987544        334568899999999999887655442 12222222  3699999999999876 222


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .     .......+...++++|++++.|+++.
T Consensus       123 ~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894         123 E-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             H-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            2     22334466656789999999999976

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.37  E-value=3.4e-12  Score=94.15  Aligned_cols=100  Identities=19%  Similarity=0.160  Sum_probs=74.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~~~~~   78 (170)
                      +.+|||||+..+...+..+++.+|++++|+|.+++.+.... .++..+..  .+.|+++|+||+|+.. ...  ...++.
T Consensus        64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~-~~~~~~~~~~~  139 (189)
T cd00881          64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVG-EEDLEEVLREI  139 (189)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcc-hhcHHHHHHHH
Confidence            46899999999989999999999999999999987665432 34444333  5799999999999865 222  123344


Q ss_pred             HHHHHhcC-------------CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRS-------------SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~-------------~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+..+..+             ...++++||++|.|+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l  178 (189)
T cd00881         140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL  178 (189)
T ss_pred             HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence            44444433             345789999999999976

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.36  E-value=2.3e-12  Score=97.54  Aligned_cols=98  Identities=15%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--T   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~   74 (170)
                      +.||||||++.|...+...+.++|++++|+|.+++    ++++.+..|    ... ...|+++|+||+|+.+ ....  .
T Consensus        85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~~~~iiivvNK~Dl~~-~~~~~~~  158 (203)
T cd01888          85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-GLKHIIIVQNKIDLVK-EEQALEN  158 (203)
T ss_pred             EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-CCCcEEEEEEchhccC-HHHHHHH
Confidence            46999999999877777778889999999999973    445444333    111 2357999999999865 2111  1


Q ss_pred             HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++.+.+...+.  ...++++||++|.|+++.
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L  190 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVL  190 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHH
Confidence            233444444331  224778999999999976

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0072|consensus

Probab=99.36  E-value=5e-12  Score=89.49  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=79.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||.+||-..+..|+.||.+.|++|+|+|.+|+.........+-.+.+..  ....++|++||.|...   ..+..|+
T Consensus        64 ~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~---~~t~~E~  140 (182)
T KOG0072|consen   64 FQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG---ALTRSEV  140 (182)
T ss_pred             ceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh---hhhHHHH
Confidence            5899999999999999999999999999999999988776665554444333  5788999999999876   3333332


Q ss_pred             HHHH----HhcCCCeEEEcccCCcchhhhH-HHHHH
Q psy17235         79 ENFW----SRRSSRRFKPQEVVEPQEVVEA-EQVQQ  109 (170)
Q Consensus        79 ~~~a----~~~~~~~~~e~Sa~~~~~v~~~-~~~~~  109 (170)
                      ....    -.......+++||.+|+|++++ .|++.
T Consensus       141 ~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~  176 (182)
T KOG0072|consen  141 LKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQR  176 (182)
T ss_pred             HHHhChHHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence            2111    0112245789999999999998 55543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.35  E-value=4e-12  Score=107.59  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||++.        +...+..+++++|++|+|||.++..++.. ..|...+..  .+.|+++|+||+|+.. .  
T Consensus        88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~-~--  161 (472)
T PRK03003         88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDER-G--  161 (472)
T ss_pred             EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCc-c--
Confidence            46899999863        34456778999999999999999877643 234444433  4799999999999864 1  


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ..+....+  ..+....+++||++|.|+.+.
T Consensus       162 -~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL  190 (472)
T PRK03003        162 -EADAAALW--SLGLGEPHPVSALHGRGVGDL  190 (472)
T ss_pred             -chhhHHHH--hcCCCCeEEEEcCCCCCcHHH
Confidence             12222223  344434458999999999976

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.35  E-value=3.9e-12  Score=111.90  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=69.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.||||||++.|..++..+++.+|++|+|+|.++   +++++.+..    +..  .++|+||++||+|+.+ .   ..++
T Consensus       297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~--~~iPiIVViNKiDl~~-~---~~e~  366 (742)
T CHL00189        297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQA--ANVPIIVAINKIDKAN-A---NTER  366 (742)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HHh--cCceEEEEEECCCccc-c---CHHH
Confidence            4799999999999999999999999999999988   455554432    221  4799999999999865 2   1222


Q ss_pred             HHHH-------HHhcC-CCeEEEcccCCcchhhhH
Q psy17235         78 MENF-------WSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~-------a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+.       ...++ ...|+++||++|.|+++.
T Consensus       367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL  401 (742)
T CHL00189        367 IKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL  401 (742)
T ss_pred             HHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence            2222       22233 245889999999999976

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.35  E-value=1.2e-11  Score=103.02  Aligned_cols=98  Identities=15%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             CeEEecCCccc----cccchhhhcc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMER----VASITSSYYK---FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~~~~~---~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      |.||||||...    ...+...|++   .++++++|+|+++.   +++++...|..++..+.   .+.|++||+||+|+.
T Consensus       208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~  287 (424)
T PRK12297        208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP  287 (424)
T ss_pred             EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence            47999999642    3345555544   59999999999875   67888888888887765   478999999999985


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .     ..+....+++.++. .++++||+++.|+++.
T Consensus       288 ~-----~~e~l~~l~~~l~~-~i~~iSA~tgeGI~eL  318 (424)
T PRK12297        288 E-----AEENLEEFKEKLGP-KVFPISALTGQGLDEL  318 (424)
T ss_pred             C-----CHHHHHHHHHHhCC-cEEEEeCCCCCCHHHH
Confidence            4     23456667777774 5778999999999987

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.35  E-value=1.7e-12  Score=108.49  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=73.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhCCCCeEEEEeeCCCCCCCCCC----CCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYAENAKIFLCGNKSDLEGTTPQ----VTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~----v~~   75 (170)
                      +.||||||++.|.......++++|++++|+|.++.+++..... +...+.......|++|++||+|+.+ ...    ...
T Consensus        87 i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~-~~~~~~~~~~  165 (426)
T TIGR00483        87 VTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN-YDEEEFEAIK  165 (426)
T ss_pred             EEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC-ccHHHHHHHH
Confidence            4799999999987666667889999999999999865422211 1112223334468999999999864 111    224


Q ss_pred             HHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+++..++    ..|+++||++|.|+.++
T Consensus       166 ~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       166 KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence            567778877764    35889999999999875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.34  E-value=3.5e-12  Score=96.64  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=58.7

Q ss_pred             CeEEecCCccccccchhhhccCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFA-EAAILVFSLDNA-ASFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~a-d~iilv~D~t~~-~Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~   68 (170)
                      ++||||||++++..++..+++++ +++|+|+|.++. .++..+..|+..+...    .+.+|++|++||+|+..
T Consensus        50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            47999999999999999999999 999999999998 7888887777665432    26899999999999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.33  E-value=7.5e-12  Score=110.87  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=69.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.||||||++.|..++..+++.+|++|+|||.++   +++++.+.    ....  .++|+||++||+|+.+ .   ..+.
T Consensus       339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~~--~~vPiIVviNKiDl~~-a---~~e~  408 (787)
T PRK05306        339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAKA--AGVPIIVAINKIDKPG-A---NPDR  408 (787)
T ss_pred             EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHHh--cCCcEEEEEECccccc-c---CHHH
Confidence            4799999999999999999999999999999988   45555432    1111  4799999999999965 2   1121


Q ss_pred             HH-------HHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         78 ME-------NFWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~-------~~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..       .++..++ ...|+++||++|.||++.
T Consensus       409 V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eL  443 (787)
T PRK05306        409 VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDEL  443 (787)
T ss_pred             HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHH
Confidence            11       1233333 235888999999999976

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.31  E-value=8.1e-12  Score=108.05  Aligned_cols=97  Identities=19%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC--C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV--T   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v--~   74 (170)
                      +.||||||++.|......++.++|++++|+|.++   +++++.+. ++   ..  .++| +++|+||+|+.+ ...+  .
T Consensus        52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-il---~~--lgi~~iIVVlNK~Dlv~-~~~~~~~  124 (581)
T TIGR00475        52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-VL---DL--LGIPHTIVVITKADRVN-EEEIKRT  124 (581)
T ss_pred             EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-HH---HH--cCCCeEEEEEECCCCCC-HHHHHHH
Confidence            4699999999998888888999999999999998   56666543 22   21  2577 999999999976 3322  2


Q ss_pred             HHHHHHHHHhcCC---CeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRSS---RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~---~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+.+..+.   ..++++||++|.|+++.
T Consensus       125 ~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL  157 (581)
T TIGR00475       125 EMFMKQILNSYIFLKNAKIFKTSAKTGQGIGEL  157 (581)
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhH
Confidence            3456666666542   35789999999999976

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00436 era GTP-binding protein Era

Probab=99.31  E-value=1.3e-11  Score=97.34  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=69.4

Q ss_pred             CeEEecCCcccc-cc-------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERV-AS-------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~-~~-------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||.... ..       ....+++++|++++|+|.++..+++  ..++..+..  .+.|+++|+||+|+.. . .
T Consensus        50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~-~-~  123 (270)
T TIGR00436        50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKF-K-D  123 (270)
T ss_pred             EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCC-H-H
Confidence            368999997532 11       1345688999999999999987775  344444433  3789999999999864 2 2


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...+....++...+...++++||++|.|+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L  155 (270)
T TIGR00436       124 KLLPLIDKYAILEDFKDIVPISALTGDNTSFL  155 (270)
T ss_pred             HHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence            22234455555556556889999999999976

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.31  E-value=2e-11  Score=101.98  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             CeEEecCCccccccch-----------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERVASIT-----------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~-----------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +.+|||||+.++..+.           ..+++.+|++++|+|.+++.+..... ++..+..  .+.|+++|+||+|+.. 
T Consensus       222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~-  297 (429)
T TIGR03594       222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVK-  297 (429)
T ss_pred             EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCC-
Confidence            4699999976543322           24688999999999999988877653 3333333  3789999999999863 


Q ss_pred             CCCCCHHHHH-HHHHh---cCCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADME-NFWSR---RSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~-~~a~~---~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      . ....++.. .+...   .+...++++||++|.|+.+.+
T Consensus       298 ~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~  336 (429)
T TIGR03594       298 D-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLL  336 (429)
T ss_pred             C-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHH
Confidence            1 11111221 12222   233457889999999999864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1707|consensus

Probab=99.30  E-value=2.1e-12  Score=108.72  Aligned_cols=137  Identities=18%  Similarity=0.141  Sum_probs=103.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      .|.||+..+.-......-++.||++.+||+++++.|++.+. .|++.+++..   .++|+||||||+|+.. ....+.+.
T Consensus        59 ~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~-~~~~s~e~  137 (625)
T KOG1707|consen   59 SIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD-NENNSDEV  137 (625)
T ss_pred             EEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc-ccccchhH
Confidence            57888755543344466789999999999999999999996 7999999888   7899999999999977 33333333


Q ss_pred             -HHHHHHhc-CCCeEEEcccCCcchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhH
Q psy17235         78 -MENFWSRR-SSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNL  141 (170)
Q Consensus        78 -~~~~a~~~-~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (170)
                       ..-+..++ .+...++|||++-.|+.++|...|.  ..+.........+..+++.+.++|..+-+
T Consensus       138 ~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqK--aVihPt~PLyda~~qelkp~~v~al~RIF  201 (625)
T KOG1707|consen  138 NTLPIMIAFAEIETCIECSALTLANVSELFYYAQK--AVIHPTSPLYDAEEQELKPRCVKALKRIF  201 (625)
T ss_pred             HHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhh--eeeccCccccccccccccHHHHHHHHHHH
Confidence             33344444 5667889999999999999877765  34455666667777777778887776544

>PRK15494 era GTPase Era; Provisional

Probab=99.30  E-value=1.9e-11  Score=99.52  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             CeEEecCCccc-cccchh-------hhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMER-VASITS-------SYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~-~~~~~~-------~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.||||||+.. +..+..       .+++++|++++|+|.++  +|..+. .|+..+...  +.|+++|+||+|+.+ . 
T Consensus       102 i~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~-~-  175 (339)
T PRK15494        102 VILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES-K-  175 (339)
T ss_pred             EEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc-c-
Confidence            46899999843 333222       34789999999999665  555553 455555443  467788999999865 2 


Q ss_pred             CCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                        ...++.+++...+ ...++++||++|.|+++.
T Consensus       176 --~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL  207 (339)
T PRK15494        176 --YLNDIKAFLTENHPDSLLFPISALSGKNIDGL  207 (339)
T ss_pred             --cHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence              2455666666554 356889999999999976

>PRK11058 GTPase HflX; Provisional

Probab=99.29  E-value=2.2e-11  Score=101.72  Aligned_cols=97  Identities=12%  Similarity=-0.005  Sum_probs=67.5

Q ss_pred             eEEecCCcccc--ccchh------hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCC
Q psy17235          2 QLWDTGGMERV--ASITS------SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         2 ~iwDt~G~e~~--~~~~~------~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      .+|||+|..+.  ..++.      ..++++|++|+|+|.+++.+++.+..|...+.... .+.|+++|+||+|+.. ...
T Consensus       248 ~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~-~~~  326 (426)
T PRK11058        248 VLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD-DFE  326 (426)
T ss_pred             EEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC-chh
Confidence            68999998432  22233      23689999999999999999888765544444333 4799999999999864 211


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ....    ....+.+.++.+||++|.|+++.
T Consensus       327 -~~~~----~~~~~~~~~v~ISAktG~GIdeL  353 (426)
T PRK11058        327 -PRID----RDEENKPIRVWLSAQTGAGIPLL  353 (426)
T ss_pred             -HHHH----HHhcCCCceEEEeCCCCCCHHHH
Confidence             1111    11245555677999999999976

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.29  E-value=2.5e-11  Score=86.73  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||...+...        ....+.++|++++|+|++++.+......|..     ..+.|+++|+||+|+.+ ...
T Consensus        51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~-~~~  124 (157)
T cd04164          51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLP-DSE  124 (157)
T ss_pred             EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCC-ccc
Confidence            468999997655321        2346779999999999999888877655533     35799999999999876 332


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .       .... ....++++||+++.|+.+.
T Consensus       125 ~-------~~~~-~~~~~~~~Sa~~~~~v~~l  148 (157)
T cd04164         125 L-------LSLL-AGKPIIAISAKTGEGLDEL  148 (157)
T ss_pred             c-------cccc-CCCceEEEECCCCCCHHHH
Confidence            2       2222 2346788999999999976

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01895 EngA2 EngA2 subfamily

Probab=99.27  E-value=4.9e-11  Score=86.38  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CeEEecCCcccc----------ccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERV----------ASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~----------~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +.+|||||....          ..+ ....++++|++++|+|.+++.+..... ++..+..  .+.|+++++||+|+.+ 
T Consensus        52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~-  127 (174)
T cd01895          52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVE-  127 (174)
T ss_pred             EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCC-
Confidence            368999997433          111 123567999999999999998876543 3333322  3689999999999876 


Q ss_pred             CCCCCHHHH-HHHHHhcC---CCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADM-ENFWSRRS---SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~-~~~a~~~~---~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+....++. ..+.+..+   ...++++||+++.|+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (174)
T cd01895         128 KDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF  167 (174)
T ss_pred             ccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence            332333322 22333332   3458899999999999863

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.26  E-value=4.1e-11  Score=103.87  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             CeEEecCCccccccc------hhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI------TSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~------~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++|||||++.+...      +..|+.  ++|++++|+|.++.+.   ...+..++.+  .++|+++|+||+|+.+ .+.
T Consensus        43 i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~-~~~  116 (591)
T TIGR00437        43 IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAE-KKG  116 (591)
T ss_pred             EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHH-hCC
Confidence            469999999887654      444543  7999999999987432   2233333333  4799999999999876 455


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +. .+.+.+++..|++ ++++||++|.|+++.+
T Consensus       117 i~-~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437       117 IR-IDEEKLEERLGVP-VVPTSATEGRGIERLK  147 (591)
T ss_pred             Ch-hhHHHHHHHcCCC-EEEEECCCCCCHHHHH
Confidence            54 3567888888985 6689999999999983

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.25  E-value=1.6e-11  Score=102.64  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC---CCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGTTP---QVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~---~v~~~   76 (170)
                      +.||||||++.|.......++.+|++++|+|.+++.++.. ...++..+ ......|+++++||+|+.+...   ....+
T Consensus        86 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~~~~~~~  164 (425)
T PRK12317         86 FTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKRYEEVKE  164 (425)
T ss_pred             EEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHHHHHHHH
Confidence            4689999999886654455789999999999997322211 11222222 2223347999999999864111   12234


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      +...+.+..++    ..++++||++|.|+.+.
T Consensus       165 ~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        165 EVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            56666666664    35889999999999874

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.25  E-value=2.5e-11  Score=92.20  Aligned_cols=101  Identities=21%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC----CCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ----VTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~----v~~~   76 (170)
                      +.||||||++.|.......++.+|++|+|+|.++...-.. ..... +.......|+|+|.||+|+.. ...    ....
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~~~~iIvviNK~D~~~-~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLGIRHVVVAVNKMDLVD-YSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcCCCcEEEEEEchhccc-CCHHHHHHHHH
Confidence            4689999999886666667899999999999987632221 11111 122222345788999999864 211    1123


Q ss_pred             HHHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +...+.+.++..  .++.+||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            455666777753  3889999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01889 SelB_euk SelB subfamily

Probab=99.24  E-value=3e-11  Score=90.42  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~~   79 (170)
                      +.+|||||+..+..........+|++++|+|.++..+......|.  +... .+.|+++++||+|+... .+....++..
T Consensus        70 ~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~  146 (192)
T cd01889          70 ITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMK  146 (192)
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence            478999999665332223345689999999999865544433332  1122 26799999999998641 1112223332


Q ss_pred             HHH-Hh-----cCCCeEEEcccCCcchhhhH
Q psy17235         80 NFW-SR-----RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a-~~-----~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.. ..     .....++++||++|.|+++.
T Consensus       147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L  177 (192)
T cd01889         147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAEL  177 (192)
T ss_pred             HHHHHHHHhcCcCCCCEEEEeccCCCCHHHH
Confidence            221 11     12235788999999999975

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00880 Era_like Era (E

Probab=99.24  E-value=6.9e-11  Score=83.72  Aligned_cols=100  Identities=16%  Similarity=0.058  Sum_probs=69.1

Q ss_pred             CeEEecCCccccccch-------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASIT-------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~-------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      +.+|||||+..+....       ..+++.+|++++|+|.+++.+..... |......  .+.|+++|+||+|+.. ...+
T Consensus        47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~-~~~~  122 (163)
T cd00880          47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLP-EEEE  122 (163)
T ss_pred             EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCC-hhhH
Confidence            4799999987765433       34788999999999999988877654 3333332  5899999999999866 2222


Q ss_pred             CHHH--HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         74 TEAD--MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~--~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....  ............++++||+++.|+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880         123 EELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             HHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            2111  112222333446778899999999876

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.23  E-value=6.8e-11  Score=102.31  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.||||||++.|..++...++.+|++++|+|.++   +++++.+..+    ..  .++|+++++||+|+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~  136 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRI  136 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCc
Confidence            3689999999999999999999999999999998   7788766432    11  378999999999985

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.21  E-value=3.6e-11  Score=89.01  Aligned_cols=99  Identities=10%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             CeEEecCCc----------cccccchhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGM----------ERVASITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~----------e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.+|||||.          +.|..+...|++.   ++++++|+|.+++-+..... ++..+..  .+.|+++++||+|+.
T Consensus        66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~  142 (179)
T TIGR03598        66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKL  142 (179)
T ss_pred             EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC
Confidence            479999994          3344455566664   57999999999876665542 2233322  368999999999986


Q ss_pred             CC-CCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhh
Q psy17235         68 GT-TPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVV  102 (170)
Q Consensus        68 ~~-~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~  102 (170)
                      .. ......++++...+..+. ..++++||++|+|++
T Consensus       143 ~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       143 KKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            41 122233455555555543 268899999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.19  E-value=9.2e-11  Score=98.19  Aligned_cols=93  Identities=20%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.+|||||++.        +......+++++|++++|+|.+++.+..  .+..|+..     .+.|+++|+||+|+.+ .
T Consensus        51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~D~~~-~  124 (435)
T PRK00093         51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-----SNKPVILVVNKVDGPD-E  124 (435)
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCcc-c
Confidence            47999999986        2333456788999999999998865443  33445443     2789999999999754 1


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                          .....++ ...|+..++++||++|.|+.+.
T Consensus       125 ----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l  153 (435)
T PRK00093        125 ----EADAYEF-YSLGLGEPYPISAEHGRGIGDL  153 (435)
T ss_pred             ----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHH
Confidence                1222333 3456665778999999999876

>cd04163 Era Era subfamily

Probab=99.17  E-value=2.2e-10  Score=82.14  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=68.2

Q ss_pred             CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||......        ....++..+|++++|+|.+++.+.. ...+...+...  +.|+++|+||+|+.. ...
T Consensus        53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~-~~~  128 (168)
T cd04163          53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVK-DKE  128 (168)
T ss_pred             EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccc-cHH
Confidence            35899999754322        3345688999999999999872221 12233333332  689999999999874 233


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...+....+....+...++++|++++.++++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l  160 (168)
T cd04163         129 DLLPLLEKLKELGPFAEIFPISALKGENVDEL  160 (168)
T ss_pred             HHHHHHHHHHhccCCCceEEEEeccCCChHHH
Confidence            33444555555555567889999999999976

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.17  E-value=5.1e-11  Score=91.24  Aligned_cols=100  Identities=14%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-------SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-------Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      +.+|||||+..|...+...++.+|++++|+|.++..       ..+....| ... ......|++++.||+|+.. . ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~-~-~~  154 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVT-V-NW  154 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEcccccc-c-cc
Confidence            478999999888766666678899999999999842       11222222 122 2223468999999999863 1 11


Q ss_pred             C-------HHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         74 T-------EADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~-------~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      +       .++...+....+.    ..++.+||++|.|+++.
T Consensus       155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~  196 (219)
T cd01883         155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEK  196 (219)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcC
Confidence            1       1223333445554    35889999999999864

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.17  E-value=1.2e-10  Score=89.44  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.||||||++.|......+++.+|++++|||+++..+.+....| .....  .++|+++++||+|+....+.+++++
T Consensus        75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~--~~~p~ilviNKiD~~~~e~~~~~~~  148 (222)
T cd01885          75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK--ERVKPVLVINKIDRLILELKLSPEE  148 (222)
T ss_pred             EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCcchhhhcCCHHH
Confidence            46899999999999999999999999999999987766543222 22222  3689999999999863245566554

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.15  E-value=2.8e-10  Score=103.28  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=51.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||++.|..++...+..+|++++|+|.++   +++++.+..+    ..  .++|+++|+||+|+..
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~--~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINIL----RQ--YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHH----HH--cCCCEEEEEECCCCcc
Confidence            4799999999999998888999999999999997   6777765422    22  3689999999999864

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.12  E-value=2.1e-10  Score=85.69  Aligned_cols=100  Identities=19%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~   79 (170)
                      +.++||||+..|.......++.+|++|+|+|..+.-.-.. ...+..+..  .++|++++.||+|+.. .+. -..++..
T Consensus        72 i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~  147 (188)
T PF00009_consen   72 ITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIK  147 (188)
T ss_dssp             EEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHH
T ss_pred             eeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchh-hhHHHHHHHHH
Confidence            4689999999998888888999999999999987644332 233333333  3788999999999863 111 1112222


Q ss_pred             -HHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235         80 -NFWSRRSS-----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 -~~a~~~~~-----~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.+..+.     ..++.+||.+|.|+.+.
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L  178 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDEL  178 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHH
Confidence             44445543     35888999999999964

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.12  E-value=3e-10  Score=98.82  Aligned_cols=97  Identities=14%  Similarity=0.125  Sum_probs=69.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC--C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV--T   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v--~   74 (170)
                      +.||||||++.|.......+.++|++++|+|.++   +++.+.+. ++    .. -++| ++||+||+|+.+ ...+  .
T Consensus        53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-il----~~-lgi~~iIVVlNKiDlv~-~~~~~~v  125 (614)
T PRK10512         53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-IL----QL-TGNPMLTVALTKADRVD-EARIAEV  125 (614)
T ss_pred             EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-HH----HH-cCCCeEEEEEECCccCC-HHHHHHH
Confidence            4699999999997766777899999999999987   55655542 22    22 1355 579999999865 2222  1


Q ss_pred             HHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+....++  ..++++||++|.|+++.
T Consensus       126 ~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L  157 (614)
T PRK10512        126 RRQVKAVLREYGFAEAKLFVTAATEGRGIDAL  157 (614)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence            2445556555553  35789999999999875

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.11  E-value=6.7e-10  Score=91.91  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=73.2

Q ss_pred             CeEEecCCccccc----cchh---hhccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVA----SITS---SYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~----~~~~---~~~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      +.|+||||...-.    .+..   ..++.+|++++|+|++   +.++++.+..|+.++..+.   .+.|++||+||+|+.
T Consensus       209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            4689999964311    1111   2477899999999998   5677888888888887765   468999999999986


Q ss_pred             CCCCCCCHHHHHHHHHhcCCC-eEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSSR-RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~~-~~~e~Sa~~~~~v~~~  104 (170)
                      . ...+ .+....+.+..+.. .++.+||+++.++++.
T Consensus       289 ~-~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeL  324 (390)
T PRK12298        289 D-EEEA-EERAKAIVEALGWEGPVYLISAASGLGVKEL  324 (390)
T ss_pred             C-hHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHH
Confidence            5 3222 23444555554432 4678999999999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.10  E-value=4.1e-10  Score=99.68  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             CeEEecCCcc----------ccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGME----------RVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e----------~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +.+|||||..          .|..++ ..+++.+|++++|+|.++..++..+. ++..+..  .+.|++||+||+|+.+ 
T Consensus       500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~-  575 (712)
T PRK09518        500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMD-  575 (712)
T ss_pred             EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCC-
Confidence            3689999953          233333 33478999999999999998888765 3344433  3789999999999865 


Q ss_pred             CCCCCHHHHHH-HHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADMEN-FWSRR---SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~~-~a~~~---~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ...  .+.... +...+   .....+.+||++|.||.+.+
T Consensus       576 ~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~  613 (712)
T PRK09518        576 EFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLA  613 (712)
T ss_pred             hhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHH
Confidence            211  111211 12211   22235678999999999763

>PRK00089 era GTPase Era; Reviewed

Probab=99.10  E-value=4.5e-10  Score=89.36  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             CeEEecCCcccc--------ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERV--------ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~--------~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||....        .......+.++|++++|+|.+++.+- .....+..+..  .+.|+++|+||+|+.. .+.
T Consensus        55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl~~-~~~  130 (292)
T PRK00089         55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDLVK-DKE  130 (292)
T ss_pred             EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcCCC-CHH
Confidence            358999996432        22334467899999999999983221 11122222222  3689999999999974 233


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ........+.+..+...++++||+++.|+++.
T Consensus       131 ~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L  162 (292)
T PRK00089        131 ELLPLLEELSELMDFAEIVPISALKGDNVDEL  162 (292)
T ss_pred             HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHH
Confidence            33445666666667677889999999999975

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.10  E-value=5.8e-10  Score=93.16  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             CeEEecCCc--------cccccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGM--------ERVASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~--------e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.+|||||.        +.+......+++.+|++++|+|.++..+...  +..|+.+     .+.|+++|+||+|+.+ .
T Consensus        49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~-~  122 (429)
T TIGR03594        49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-----SGKPVILVANKIDGKK-E  122 (429)
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----hCCCEEEEEECccCCc-c
Confidence            469999996        4455566778899999999999988655443  3344432     3689999999999865 2


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...    ..+ ...+|+..++++||++|.|+.+.
T Consensus       123 ~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~l  151 (429)
T TIGR03594       123 DAV----AAE-FYSLGFGEPIPISAEHGRGIGDL  151 (429)
T ss_pred             ccc----HHH-HHhcCCCCeEEEeCCcCCChHHH
Confidence            221    122 34567766889999999999876

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.07  E-value=4.7e-10  Score=93.37  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~   74 (170)
                      +.+|||||++.|...+......+|++++|+|.++.    ++.+.+.    .+. .....|+++++||+|+.+ ...  ..
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~-~~gi~~iIVvvNK~Dl~~-~~~~~~~  155 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALE-IIGIKNIVIVQNKIDLVS-KEKALEN  155 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHH-HcCCCeEEEEEEccccCC-HHHHHHH
Confidence            46999999999988888888899999999999963    3444333    222 222346899999999865 211  12


Q ss_pred             HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+.....  ...++++||++|.|+++.
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L  187 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDAL  187 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHH
Confidence            234444444331  224788999999999865

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.07  E-value=6.7e-10  Score=82.81  Aligned_cols=98  Identities=11%  Similarity=0.102  Sum_probs=64.1

Q ss_pred             CeEEecCCc----------cccccchhhhccCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGGM----------ERVASITSSYYKFA---EAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G~----------e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +.||||||.          +.+..+...|++.+   +++++|+|.+++.+...  +..|+   ..  .+.|+++++||+|
T Consensus        72 l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~D  146 (196)
T PRK00454         72 LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKAD  146 (196)
T ss_pred             EEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECcc
Confidence            468999994          45555666677755   67888999887655433  22332   21  3689999999999


Q ss_pred             CCCCCCC--CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         66 LEGTTPQ--VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        66 l~~~~~~--v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +.+ ...  ...+++..+....+. .++++||+++.|+.+.+
T Consensus       147 l~~-~~~~~~~~~~i~~~l~~~~~-~~~~~Sa~~~~gi~~l~  186 (196)
T PRK00454        147 KLK-KGERKKQLKKVRKALKFGDD-EVILFSSLKKQGIDELR  186 (196)
T ss_pred             cCC-HHHHHHHHHHHHHHHHhcCC-ceEEEEcCCCCCHHHHH
Confidence            865 222  122334444443333 56789999999999763

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.06  E-value=8.7e-10  Score=93.41  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=66.9

Q ss_pred             CeEEecCCccc----cccchh---hhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhC------------CCCeE
Q psy17235          1 MQLWDTGGMER----VASITS---SYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYA------------ENAKI   57 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~---~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~------------~~~pv   57 (170)
                      |.||||||...    ...+..   .+++++|++|+|+|+++.    +.+..+..|..++..+.            .+.|+
T Consensus       208 f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~  287 (500)
T PRK12296        208 FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR  287 (500)
T ss_pred             EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence            47899999532    112222   245689999999999863    45666666666665443            36899


Q ss_pred             EEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         58 FLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        58 vlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |||+||+|+.+ .+.+.. .........+. .++++||+++.|+.+.
T Consensus       288 IVVlNKiDL~d-a~el~e-~l~~~l~~~g~-~Vf~ISA~tgeGLdEL  331 (500)
T PRK12296        288 LVVLNKIDVPD-ARELAE-FVRPELEARGW-PVFEVSAASREGLREL  331 (500)
T ss_pred             EEEEECccchh-hHHHHH-HHHHHHHHcCC-eEEEEECCCCCCHHHH
Confidence            99999999975 333222 22222334455 4778999999999987

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.06  E-value=7.4e-10  Score=92.73  Aligned_cols=100  Identities=17%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             CeEEecCCccc----------cccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMER----------VASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~----------~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +.+|||||...          |..++ ..+++.+|++|+|+|.+++.+..... +...+..  .+.|+++|+||+|+.+ 
T Consensus       223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~-  298 (435)
T PRK00093        223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVD-  298 (435)
T ss_pred             EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCC-
Confidence            46899999643          22222 23678999999999999988876653 3333333  3689999999999864 


Q ss_pred             CCCCCHHHHHHHHH---hcCCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADMENFWS---RRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~~~a~---~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ... ..+....+..   ..+...++++||++|.|+.+.+
T Consensus       299 ~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~  336 (435)
T PRK00093        299 EKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL  336 (435)
T ss_pred             HHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence            211 1111112222   2233457889999999999864

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.06  E-value=8e-10  Score=92.14  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--T   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~   74 (170)
                      +.||||||++.|....-.....+|++++|+|.+++    ++.+.+..+    .. ....|+++|+||+|+.+ ....  .
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~-~~i~~iiVVlNK~Dl~~-~~~~~~~  160 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DI-IGIKNIVIVQNKIDLVS-KERALEN  160 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HH-cCCCcEEEEEEeecccc-chhHHHH
Confidence            46999999998765444444567999999999953    444443322    11 12346899999999865 2221  1


Q ss_pred             HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+.+...  ...++++||++|.|+++.
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L  192 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDAL  192 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHH
Confidence            234445554321  235788999999999865

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.04  E-value=1.2e-09  Score=96.73  Aligned_cols=95  Identities=21%  Similarity=0.254  Sum_probs=63.8

Q ss_pred             CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||.+.        +......+++.+|++|+|+|.++.-+... ..|...+..  .+.|+++|+||+|+.. .. 
T Consensus       325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~-~~-  399 (712)
T PRK09518        325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQA-SE-  399 (712)
T ss_pred             EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECccccc-ch-
Confidence            46899999763        33445667899999999999987432211 234444443  4799999999999864 21 


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                         .....+. ..+....+++||++|.||.+.
T Consensus       400 ---~~~~~~~-~lg~~~~~~iSA~~g~GI~eL  427 (712)
T PRK09518        400 ---YDAAEFW-KLGLGEPYPISAMHGRGVGDL  427 (712)
T ss_pred             ---hhHHHHH-HcCCCCeEEEECCCCCCchHH
Confidence               1222222 234434457999999999976

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.3e-09  Score=90.07  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      |.|.|||||+.|..|+..-..=+|.+|||+|.+|   |++.+.+...    +.  .++|+++..||+|.++    ..++.
T Consensus        57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~ha----k~--a~vP~iVAiNKiDk~~----~np~~  126 (509)
T COG0532          57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHA----KA--AGVPIVVAINKIDKPE----ANPDK  126 (509)
T ss_pred             EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHH----HH--CCCCEEEEEecccCCC----CCHHH
Confidence            4689999999999999988899999999999998   6777665322    22  4899999999999875    22232


Q ss_pred             HHHHHHhcCC--------CeEEEcccCCcchhhhHHHHH
Q psy17235         78 MENFWSRRSS--------RRFKPQEVVEPQEVVEAEQVQ  108 (170)
Q Consensus        78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~~~~~  108 (170)
                      ...-..++|+        ..|.+.||++|+|+++...+.
T Consensus       127 v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i  165 (509)
T COG0532         127 VKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI  165 (509)
T ss_pred             HHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence            2222223333        468999999999999874333

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.03  E-value=8.8e-10  Score=95.58  Aligned_cols=95  Identities=9%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~~~~   79 (170)
                      +.||||||+..|...+..+++.+|++++|+|.++. .......|+..+...  ++|+++|+||+|+.+ .+.. ..++..
T Consensus        66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~-a~~~~v~~ei~  141 (594)
T TIGR01394        66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDRPS-ARPDEVVDEVF  141 (594)
T ss_pred             EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCCCC-cCHHHHHHHHH
Confidence            46999999999999999999999999999999873 234455666666553  689999999999865 3221 123344


Q ss_pred             HHHHhc-------CCCeEEEcccCCcch
Q psy17235         80 NFWSRR-------SSRRFKPQEVVEPQE  100 (170)
Q Consensus        80 ~~a~~~-------~~~~~~e~Sa~~~~~  100 (170)
                      .+....       .++ ++.+||++|.+
T Consensus       142 ~l~~~~g~~~e~l~~p-vl~~SA~~g~~  168 (594)
T TIGR01394       142 DLFAELGADDEQLDFP-IVYASGRAGWA  168 (594)
T ss_pred             HHHHhhccccccccCc-EEechhhcCcc
Confidence            443322       333 67789999964

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=99.03  E-value=2.3e-09  Score=81.71  Aligned_cols=70  Identities=66%  Similarity=0.976  Sum_probs=66.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235         98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK  167 (170)
Q Consensus        98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  167 (170)
                      +..|.++..-++..+..|+.+++.++.++.+|+.+|+.+|+++|.+.+|++.||||.+...|++|++.||
T Consensus       150 ~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~lk  219 (219)
T cd07621         150 NKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAALK  219 (219)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4667778778888999999999999999999999999999999999999999999999999999999987

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=99.01  E-value=3.7e-09  Score=80.05  Aligned_cols=70  Identities=56%  Similarity=0.897  Sum_probs=66.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235         98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK  167 (170)
Q Consensus        98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  167 (170)
                      |..|.+++..++.+++.|+++++.++.++.+|+.+|+.+|+++|.+.+|++.||||.+...|++||++||
T Consensus       149 ~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l~  218 (218)
T cd07662         149 NKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVLN  218 (218)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677777888999999999999999999999999999999999999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>cd04167 Snu114p Snu114p subfamily

Probab=98.99  E-value=2.4e-09  Score=81.55  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=52.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.+|||||++.|...+..++..+|++++|+|.++..++.. ..|+.....  .+.|+++|+||+|+.
T Consensus        73 i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          73 FNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            4799999999998888899999999999999998877643 345444433  358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.99  E-value=4.3e-09  Score=81.41  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             CeEEecCCccccc-------cchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHH------------------------
Q psy17235          1 MQLWDTGGMERVA-------SITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEI------------------------   48 (170)
Q Consensus         1 l~iwDt~G~e~~~-------~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i------------------------   48 (170)
                      +++|||||+....       .....+++++|++++|+|.+++. ....+...+...                        
T Consensus        49 i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~  128 (233)
T cd01896          49 IQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINIT  128 (233)
T ss_pred             EEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEe
Confidence            4789999985432       12345789999999999998865 344333333210                        


Q ss_pred             -----------------Hhh-------------------------CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy17235         49 -----------------VTY-------------------------AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS   86 (170)
Q Consensus        49 -----------------~~~-------------------------~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~   86 (170)
                                       .++                         ...+|+++|+||+|+..      .+++..++..  
T Consensus       129 ~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--  200 (233)
T cd01896         129 STVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--  200 (233)
T ss_pred             ccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--
Confidence                             000                         02369999999999743      4566666654  


Q ss_pred             CCeEEEcccCCcchhhhH
Q psy17235         87 SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        87 ~~~~~e~Sa~~~~~v~~~  104 (170)
                       +.++++||+++.|+++.
T Consensus       201 -~~~~~~SA~~g~gi~~l  217 (233)
T cd01896         201 -PNSVVISAEKGLNLDEL  217 (233)
T ss_pred             -CCEEEEcCCCCCCHHHH
Confidence             34778899999999975

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.97  E-value=5.6e-10  Score=93.92  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=70.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhCCCC-eEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-------VLSQHLLEIVTYAENA-KIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~-------~~~~~~~~i~~~~~~~-pvvlvgnK~Dl~~~~~~   72 (170)
                      +.|.|||||+.|.......++.+|++|+|+|.++ .+|+       ..+..+.....  .++ ++|++.||+|+.+  ..
T Consensus        87 i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~--~~  161 (447)
T PLN00043         87 CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATT--PK  161 (447)
T ss_pred             EEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCc--hh
Confidence            4689999999998888888999999999999987 3343       22222222222  356 4788999999752  11


Q ss_pred             C-------CHHHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235         73 V-------TEADMENFWSRRSS----RRFKPQEVVEPQEVVE  103 (170)
Q Consensus        73 v-------~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~  103 (170)
                      .       ..+++..+.+..|+    ..|+++||.+|.|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1       13567777887774    3588999999999875

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=98.96  E-value=6.4e-09  Score=79.11  Aligned_cols=70  Identities=53%  Similarity=0.876  Sum_probs=65.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235         98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK  167 (170)
Q Consensus        98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  167 (170)
                      +..|.+++.-++.+++.|..+++.++.++.+|+.+|+.+|++++.+.+|++.||+|.+...|++|++.||
T Consensus       149 ~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~~  218 (218)
T cd07663         149 SKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLFK  218 (218)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5567777778888999999999999999999999999999999999999999999999999999999987

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>cd00066 G-alpha G protein alpha subunit

Probab=98.95  E-value=6.6e-09  Score=83.87  Aligned_cols=67  Identities=22%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~   67 (170)
                      +.+||++||...+..|.+|+.+++++|+|+|+++.          ..+......+..+.+..  .+.|++|++||.|+-
T Consensus       163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f  241 (317)
T cd00066         163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLF  241 (317)
T ss_pred             EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHH
Confidence            46899999999999999999999999999999974          45655556666665544  689999999999964

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK10218 GTP-binding protein; Provisional

Probab=98.94  E-value=4.1e-09  Score=91.51  Aligned_cols=97  Identities=10%  Similarity=0.038  Sum_probs=66.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~   79 (170)
                      +.+|||||+..|...+..+++.+|++|+|+|.++....+ ...++.....  .++|++++.||+|+.+ .+. -..++..
T Consensus        70 inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--~gip~IVviNKiD~~~-a~~~~vl~ei~  145 (607)
T PRK10218         70 INIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--YGLKPIVVINKVDRPG-ARPDWVVDQVF  145 (607)
T ss_pred             EEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--cCCCEEEEEECcCCCC-CchhHHHHHHH
Confidence            479999999999999999999999999999998754333 2333333333  3789999999999875 222 1123333


Q ss_pred             HHHHhcCC------CeEEEcccCCcchh
Q psy17235         80 NFWSRRSS------RRFKPQEVVEPQEV  101 (170)
Q Consensus        80 ~~a~~~~~------~~~~e~Sa~~~~~v  101 (170)
                      .+....+.      ..++.+||++|.+.
T Consensus       146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~  173 (607)
T PRK10218        146 DLFVNLDATDEQLDFPIVYASALNGIAG  173 (607)
T ss_pred             HHHhccCccccccCCCEEEeEhhcCccc
Confidence            33322221      13667899999753

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.94  E-value=4.6e-09  Score=81.48  Aligned_cols=65  Identities=22%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.++..+. ....|+..+...  ++|+++++||+|+..
T Consensus        66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~  130 (237)
T cd04168          66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAG  130 (237)
T ss_pred             EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccC
Confidence            46999999999998899999999999999999987554 334555555443  789999999999865

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.89  E-value=1.2e-08  Score=90.80  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             CeEEecCCccccccc----------hhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASI----------TSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~----------~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +++|||||+..+...          ...|+  ..+|++++|+|.++.+.-   ..|..++.+.  +.|++++.||+|+.+
T Consensus        52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~  126 (772)
T PRK09554         52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAE  126 (772)
T ss_pred             EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhh
Confidence            479999999876432          23343  489999999999886542   2344555443  699999999999875


Q ss_pred             CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.+. .+.+++.+.+|++ ++++||++++|+++..
T Consensus       127 -~~~i~-id~~~L~~~LG~p-VvpiSA~~g~GIdeL~  160 (772)
T PRK09554        127 -KQNIR-IDIDALSARLGCP-VIPLVSTRGRGIEALK  160 (772)
T ss_pred             -ccCcH-HHHHHHHHHhCCC-EEEEEeecCCCHHHHH
Confidence             45553 4567888889986 5679999999999863

>cd04169 RF3 RF3 subfamily

Probab=98.89  E-value=8.9e-09  Score=81.24  Aligned_cols=65  Identities=22%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||+..|......+++.+|++|+|+|.++...-. ...++.....  .++|+++++||+|+..
T Consensus        73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~  137 (267)
T cd04169          73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREG  137 (267)
T ss_pred             EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCC
Confidence            479999999999887777899999999999998754322 2334333322  4789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01855 YqeH YqeH

Probab=98.87  E-value=1.2e-08  Score=76.17  Aligned_cols=86  Identities=15%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH-----HhcC
Q psy17235         12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW-----SRRS   86 (170)
Q Consensus        12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a-----~~~~   86 (170)
                      +..++..+++++|++++|+|++++..     .|...+.....+.|+++|+||+|+..  .....+....+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLP--KDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCC--CCCCHHHHHHHHHHHHHhhcC
Confidence            46778889999999999999998652     23333322235789999999999864  233344444444     2333


Q ss_pred             C--CeEEEcccCCcchhhhH
Q psy17235         87 S--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        87 ~--~~~~e~Sa~~~~~v~~~  104 (170)
                      .  ..++.+||+++.|+++.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL  116 (190)
T cd01855          97 LKPKDVILISAKKGWGVEEL  116 (190)
T ss_pred             CCcccEEEEECCCCCCHHHH
Confidence            3  34778999999999976

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.86  E-value=2.1e-08  Score=77.15  Aligned_cols=100  Identities=18%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CeEEecCCccccccchhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHH
Q psy17235          1 MQLWDTGGMERVASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~   76 (170)
                      +.+.||||++.|.......+  ..+|++++|+|.+...+- ....++..+..  .++|+++|.||+|+.+ ...+  ..+
T Consensus        86 i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~--~~ip~ivvvNK~D~~~-~~~~~~~~~  161 (224)
T cd04165          86 VTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA--LNIPVFVVVTKIDLAP-ANILQETLK  161 (224)
T ss_pred             EEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH--cCCCEEEEEECccccC-HHHHHHHHH
Confidence            36899999998855333333  368999999998765432 22233333333  3689999999999854 2111  112


Q ss_pred             HHHHHHHh-------------------------cCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSR-------------------------RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~-------------------------~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +...+.+.                         .....++.+||.+|.|+++.
T Consensus       162 ~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L  214 (224)
T cd04165         162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLL  214 (224)
T ss_pred             HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHH
Confidence            22222221                         11336778999999999976

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.85  E-value=7.1e-09  Score=86.00  Aligned_cols=93  Identities=15%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCCC--
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQVT--   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v~--   74 (170)
                      +.||||||++.|..........+|++++|+|.++.   ++.+.+    ..+...  ++|.+ ++.||+|+.+ .....  
T Consensus        77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l----~~~~~~--gi~~iIvvvNK~Dl~~-~~~~~~~  149 (394)
T TIGR00485        77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI----LLARQV--GVPYIVVFLNKCDMVD-DEELLEL  149 (394)
T ss_pred             EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHHc--CCCEEEEEEEecccCC-HHHHHHH
Confidence            46899999999865444455678999999999873   343332    223222  56655 6899999865 22211  


Q ss_pred             -HHHHHHHHHhcCC----CeEEEcccCCcch
Q psy17235         75 -EADMENFWSRRSS----RRFKPQEVVEPQE  100 (170)
Q Consensus        75 -~~~~~~~a~~~~~----~~~~e~Sa~~~~~  100 (170)
                       .++...+.+.++.    ..++.+||.++.+
T Consensus       150 ~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~  180 (394)
T TIGR00485       150 VEMEVRELLSEYDFPGDDTPIIRGSALKALE  180 (394)
T ss_pred             HHHHHHHHHHhcCCCccCccEEECccccccc
Confidence             2456677777764    3577899998854

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.85  E-value=1.3e-08  Score=73.09  Aligned_cols=99  Identities=12%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             CeEEecCCc----------cccccchhhhccC---CcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGGM----------ERVASITSSYYKF---AEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G~----------e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +.+|||||.          +.+..+...|+..   .+++++++|.++..+.  ..+..|+...     +.|+++|+||+|
T Consensus        47 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D  121 (170)
T cd01876          47 FRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKAD  121 (170)
T ss_pred             EEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchh
Confidence            368999993          3344555666654   5788999999876332  2334555432     589999999999


Q ss_pred             CCCC-CCCCCHHHHHHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235         66 LEGT-TPQVTEADMENFWS-RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        66 l~~~-~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +... .............+ ....+.++++||+++.++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l  162 (170)
T cd01876         122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDEL  162 (170)
T ss_pred             cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHH
Confidence            8541 11111122222332 234456779999999999876

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.85  E-value=9.7e-09  Score=84.28  Aligned_cols=90  Identities=12%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH----HHHh
Q psy17235          9 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN----FWSR   84 (170)
Q Consensus         9 ~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~----~a~~   84 (170)
                      .+.|..+...+++.++++++|+|+.+...     .|.+++.+...+.|+++|+||+|+..  +.+..++...    +++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHHH
Confidence            45688888899999999999999987652     46666666656789999999999864  3455555444    4666


Q ss_pred             cCCC--eEEEcccCCcchhhhHH
Q psy17235         85 RSSR--RFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        85 ~~~~--~~~e~Sa~~~~~v~~~~  105 (170)
                      .++.  .++.+||+++.|+++.+
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~  145 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELL  145 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHH
Confidence            7763  47789999999999763

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>smart00275 G_alpha G protein alpha subunit

Probab=98.84  E-value=5.9e-09  Score=84.96  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~   67 (170)
                      +.+||++||...+..|.+|+.+++++|+|.|+++.          ..+......+..+.+..  .++|++|++||.|+-
T Consensus       186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence            46899999999999999999999999999999973          45666666666666544  789999999999974

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.75  E-value=4.4e-08  Score=73.88  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~   76 (170)
                      +.+.||||+..|.......+..+|++++|+|.+..-+-. ....+..+...  ++| +|++.||+|+.. ....   ..+
T Consensus        67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~-~~~~~~~~~~  142 (195)
T cd01884          67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVD-DEELLELVEM  142 (195)
T ss_pred             EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCC-cHHHHHHHHH
Confidence            358999999988776667788999999999998643222 22233333332  566 778999999854 2221   223


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQEVV  102 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~  102 (170)
                      +...+....+.    ..++.+||++|.|+.
T Consensus       143 ~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         143 EVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            45556555554    458889999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.73  E-value=3.6e-08  Score=81.87  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=62.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCC--
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVT--   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~--   74 (170)
                      +.||||||++.|....-.-...+|++++|+|.++.   ++.+.    +..+...  ++| +|++.||+|+.+ ...+.  
T Consensus        77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~----~~~~~~~--g~~~~IvviNK~D~~~-~~~~~~~  149 (394)
T PRK12736         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQV--GVPYLVVFLNKVDLVD-DEELLEL  149 (394)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHH----HHHHHHc--CCCEEEEEEEecCCcc-hHHHHHH
Confidence            36899999998866555556789999999999863   33333    2233332  577 678999999864 22221  


Q ss_pred             -HHHHHHHHHhcCC----CeEEEcccCCcc
Q psy17235         75 -EADMENFWSRRSS----RRFKPQEVVEPQ   99 (170)
Q Consensus        75 -~~~~~~~a~~~~~----~~~~e~Sa~~~~   99 (170)
                       .++...+.+..+.    ..++.+||++|.
T Consensus       150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        150 VEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence             2355566666654    357889999984

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.72  E-value=3.5e-08  Score=82.19  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC----CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV----TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v----~~~   76 (170)
                      +.||||||++.|......-+..+|++++|+|.+....-+....|. .+. .....+++++.||+|+.+ ...-    ..+
T Consensus        82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~-~~~~~~iivviNK~D~~~-~~~~~~~~i~~  158 (406)
T TIGR02034        82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IAS-LLGIRHVVLAVNKMDLVD-YDEEVFENIKK  158 (406)
T ss_pred             EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHH-HcCCCcEEEEEEeccccc-chHHHHHHHHH
Confidence            468999999999665556688999999999987643221111121 112 212346889999999864 2211    112


Q ss_pred             HHHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +...+.+..+..  .++++||++|.|+.+.
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            333344555542  4888999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.71  E-value=3.9e-08  Score=77.73  Aligned_cols=93  Identities=13%  Similarity=0.025  Sum_probs=60.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.++...-.. ...+..+..  .++|++++.||+|+.+....-..++.+.
T Consensus        66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a~~~~~~~~l~~  142 (270)
T cd01886          66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGADFFRVVEQIRE  142 (270)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence            3689999999888888999999999999999987533222 223333333  3689999999999865111112233333


Q ss_pred             HHHhcCCCeEEEcccC
Q psy17235         81 FWSRRSSRRFKPQEVV   96 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~   96 (170)
                      ......++..++.|+.
T Consensus       143 ~l~~~~~~~~~Pisa~  158 (270)
T cd01886         143 KLGANPVPLQLPIGEE  158 (270)
T ss_pred             HhCCCceEEEeccccC
Confidence            3333334555666665

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0077|consensus

Probab=98.69  E-value=3.7e-08  Score=71.51  Aligned_cols=76  Identities=16%  Similarity=0.317  Sum_probs=65.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++-+|.+|+..-+..|..|+..+|++++.+|..|.+.|...+..++.+....  .++|+++.|||+|.+.   .+++++.
T Consensus        66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~---a~se~~l  142 (193)
T KOG0077|consen   66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY---AASEDEL  142 (193)
T ss_pred             EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC---cccHHHH
Confidence            4678999999989999999999999999999999999999888887776555  7999999999999976   5566654


Q ss_pred             H
Q psy17235         79 E   79 (170)
Q Consensus        79 ~   79 (170)
                      +
T Consensus       143 ~  143 (193)
T KOG0077|consen  143 R  143 (193)
T ss_pred             H
Confidence            3

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.68  E-value=8.4e-08  Score=65.97  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235         13 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK   91 (170)
Q Consensus        13 ~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~   91 (170)
                      ..+...++++++++++||+.++++|++.+  |.+.+.... .++|.+++|||.|+.+ .+.+..+++..+         .
T Consensus        37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~-~~~~~~~~~~~~---------~  104 (124)
T smart00010       37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEE-ERQVATEEGLEF---------A  104 (124)
T ss_pred             hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHh-hCcCCHHHHHHH---------H
Confidence            34567788999999999999999999876  888776655 6789999999999865 446665555433         3


Q ss_pred             EcccCCcchhh
Q psy17235         92 PQEVVEPQEVV  102 (170)
Q Consensus        92 e~Sa~~~~~v~  102 (170)
                      ++|++++.|+.
T Consensus       105 ~~s~~~~~~~~  115 (124)
T smart00010      105 ETSAKTPEEGE  115 (124)
T ss_pred             HHhCCCcchhh
Confidence            57889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.66  E-value=6.5e-08  Score=82.11  Aligned_cols=101  Identities=21%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~   76 (170)
                      +.||||||++.|......-+..+|++++|+|.+....-.....| . +.......|+||+.||+|+.+ ...-..    +
T Consensus       109 i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~lg~~~iIvvvNKiD~~~-~~~~~~~~i~~  185 (474)
T PRK05124        109 FIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLLGIKHLVVAVNKMDLVD-YSEEVFERIRE  185 (474)
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHhCCCceEEEEEeecccc-chhHHHHHHHH
Confidence            46899999999865444457999999999998764211111111 1 111112347899999999864 222111    1


Q ss_pred             HHHHHHHhcC---CCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRS---SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~---~~~~~e~Sa~~~~~v~~~  104 (170)
                      +...+.+..+   ...++.+||++|.|+.+.
T Consensus       186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            2223333433   245888999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.66  E-value=9e-08  Score=71.21  Aligned_cols=68  Identities=24%  Similarity=0.361  Sum_probs=48.9

Q ss_pred             CeEEecCCcccccc-chhh--hccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS-ITSS--YYKFAEAAILVFSLDN-AASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~-~~~~--~~~~ad~iilv~D~t~-~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~   68 (170)
                      +++.|+||+++.+. +...  +..++.|+|+|.|.+. +..+..+-.++-.+....    ..+|++|++||+|+..
T Consensus        51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            46899999999876 3333  5889999999999974 556777766666654433    6799999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13351 elongation factor G; Reviewed

Probab=98.66  E-value=4.2e-08  Score=86.71  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.++..+......| ..+..  .++|+++++||+|+..
T Consensus        75 i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         75 INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh--cCCCEEEEEECCCCCC
Confidence            47999999999999999999999999999999998877765555 33333  3789999999999876

>PRK12289 GTPase RsgA; Reviewed

Probab=98.66  E-value=1.5e-07  Score=76.98  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235         15 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ   93 (170)
Q Consensus        15 ~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~   93 (170)
                      +....+.++|.+++|+|++++. ++..+..|+..+..  .++|++||+||+|+.+ ...+  .........+|++ ++.+
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~-~~~~--~~~~~~~~~~g~~-v~~i  155 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVS-PTEQ--QQWQDRLQQWGYQ-PLFI  155 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCC-hHHH--HHHHHHHHhcCCe-EEEE
Confidence            4455688999999999999876 56667788776532  5799999999999864 2111  1112223456774 6678


Q ss_pred             ccCCcchhhhH
Q psy17235         94 EVVEPQEVVEA  104 (170)
Q Consensus        94 Sa~~~~~v~~~  104 (170)
                      ||+++.|+++.
T Consensus       156 SA~tg~GI~eL  166 (352)
T PRK12289        156 SVETGIGLEAL  166 (352)
T ss_pred             EcCCCCCHHHH
Confidence            99999999865

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.65  E-value=8.9e-08  Score=82.17  Aligned_cols=65  Identities=22%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||++.|......+++.+|++|+|+|.++.-.- ....++.....  .++|+++++||+|+..
T Consensus        81 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRDG  145 (526)
T ss_pred             EEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence            47899999999988777789999999999999875322 23344433332  4799999999999865

>KOG1145|consensus

Probab=98.65  E-value=2.9e-07  Score=77.95  Aligned_cols=94  Identities=14%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.|.|||||..|..|+..--.-+|++++|+...|   |++.+.+..-    ..  .++|+|+..||||.++    -+++.
T Consensus       203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA----k~--A~VpiVvAinKiDkp~----a~pek  272 (683)
T KOG1145|consen  203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHA----KS--ANVPIVVAINKIDKPG----ANPEK  272 (683)
T ss_pred             EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHH----Hh--cCCCEEEEEeccCCCC----CCHHH
Confidence            4689999999999999998999999999999887   5666654322    11  5899999999999765    22232


Q ss_pred             HH-HHH------HhcCC-CeEEEcccCCcchhhhH
Q psy17235         78 ME-NFW------SRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~-~~a------~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      .. ++.      .++|. -..++.||++|+|++..
T Consensus       273 v~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L  307 (683)
T KOG1145|consen  273 VKRELLSQGIVVEDLGGDVQVIPISALTGENLDLL  307 (683)
T ss_pred             HHHHHHHcCccHHHcCCceeEEEeecccCCChHHH
Confidence            22 222      23333 34788999999999965

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.65  E-value=1.1e-07  Score=75.85  Aligned_cols=80  Identities=13%  Similarity=-0.006  Sum_probs=60.6

Q ss_pred             hccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235         19 YYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE   97 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~   97 (170)
                      .+.++|.+++|+|++++. ++..+..|+..+..  .++|+++|+||+|+.+ .  ........+....+.+ ++.+||++
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~-~--~~~~~~~~~~~~~g~~-v~~vSA~~  148 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLD-D--EEEELELVEALALGYP-VLAVSAKT  148 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCC-h--HHHHHHHHHHHhCCCe-EEEEECCC
Confidence            378999999999999998 88888889877654  3799999999999965 2  1111223334445664 56789999


Q ss_pred             cchhhhH
Q psy17235         98 PQEVVEA  104 (170)
Q Consensus        98 ~~~v~~~  104 (170)
                      +.|+++.
T Consensus       149 g~gi~~L  155 (287)
T cd01854         149 GEGLDEL  155 (287)
T ss_pred             CccHHHH
Confidence            9999875

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.64  E-value=2.3e-07  Score=77.41  Aligned_cols=98  Identities=18%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      |++.|||||-.|..-....+.-+.|.++|+|.+.----+.+.+.+-.+.   .+..+|-|.||+||+.   .-...-.++
T Consensus        78 lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~---Adpervk~e  151 (603)
T COG0481          78 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPA---ADPERVKQE  151 (603)
T ss_pred             EEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCC---CCHHHHHHH
Confidence            5789999999998877778899999999999987644444445544443   4788999999999987   222233344


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +-.-.|++  --..+|||+|.||++.
T Consensus       152 Ie~~iGid~~dav~~SAKtG~gI~~i  177 (603)
T COG0481         152 IEDIIGIDASDAVLVSAKTGIGIEDV  177 (603)
T ss_pred             HHHHhCCCcchheeEecccCCCHHHH
Confidence            44455653  4667899999999964

>PRK12735 elongation factor Tu; Reviewed

Probab=98.64  E-value=8.7e-08  Score=79.63  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCC---CCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQ---VTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~---v~~~   76 (170)
                      +.|+||||++.|......-+..+|++++|+|.++...- ....++..+..  .++|.+ ++.||+|+.+ ...   .-.+
T Consensus        77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~--~gi~~iivvvNK~Dl~~-~~~~~~~~~~  152 (396)
T PRK12735         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ--VGVPYIVVFLNKCDMVD-DEELLELVEM  152 (396)
T ss_pred             EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH--cCCCeEEEEEEecCCcc-hHHHHHHHHH
Confidence            36899999998866555667789999999999874322 22233333332  357855 5799999864 211   1223


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQEVV  102 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~  102 (170)
                      +...+.+.++.    ..|+.+||.++.|..
T Consensus       153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~  182 (396)
T PRK12735        153 EVRELLSKYDFPGDDTPIIRGSALKALEGD  182 (396)
T ss_pred             HHHHHHHHcCCCcCceeEEecchhccccCC
Confidence            56666666654    357889999997643

>PRK00098 GTPase RsgA; Reviewed

Probab=98.64  E-value=1.2e-07  Score=76.03  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             ccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCc
Q psy17235         20 YKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEP   98 (170)
Q Consensus        20 ~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~   98 (170)
                      ..++|++++|+|++++.++.. +..|+..+..  .++|+++|+||+|+.+ ... ...+.....+..+.+ ++.+||+++
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~-~~~-~~~~~~~~~~~~g~~-v~~vSA~~g  152 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLD-DLE-EARELLALYRAIGYD-VLELSAKEG  152 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCC-CHH-HHHHHHHHHHHCCCe-EEEEeCCCC
Confidence            389999999999999876554 4678776543  4799999999999964 221 122334445556764 668899999


Q ss_pred             chhhhH
Q psy17235         99 QEVVEA  104 (170)
Q Consensus        99 ~~v~~~  104 (170)
                      .|+++.
T Consensus       153 ~gi~~L  158 (298)
T PRK00098        153 EGLDEL  158 (298)
T ss_pred             ccHHHH
Confidence            999875

>KOG0462|consensus

Probab=98.63  E-value=2.1e-07  Score=78.73  Aligned_cols=99  Identities=17%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~~~~   79 (170)
                      |.+.|||||-.|..-....+.-++|+|+|+|.+.----+.+-+++-.+.   .+..+|.|.||+|++. .++- -..+..
T Consensus       127 LNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~-adpe~V~~q~~  202 (650)
T KOG0462|consen  127 LNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPS-ADPERVENQLF  202 (650)
T ss_pred             EEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCC-CCHHHHHHHHH
Confidence            5789999999999888888999999999999987544343434433332   3688999999999987 2221 112222


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++-...+ ...+-+|||+|.|+.+.
T Consensus       203 ~lF~~~~-~~~i~vSAK~G~~v~~l  226 (650)
T KOG0462|consen  203 ELFDIPP-AEVIYVSAKTGLNVEEL  226 (650)
T ss_pred             HHhcCCc-cceEEEEeccCccHHHH
Confidence            2222222 23556799999999963

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.63  E-value=9.2e-08  Score=84.61  Aligned_cols=65  Identities=14%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.++....+...-| ..+..  .++|+++++||+|+..
T Consensus        77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCC
Confidence            46899999999988888999999999999999987665543333 33333  3689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.62  E-value=2.2e-07  Score=73.17  Aligned_cols=81  Identities=17%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.++.........|. .+..  .++|++++.||+|+.. .  ...+....
T Consensus        66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~-~--~~~~~~~~  139 (268)
T cd04170          66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRER-A--DFDKTLAA  139 (268)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCC-C--CHHHHHHH
Confidence            468999999988888888999999999999999876655444442 2322  3689999999999875 2  22233444


Q ss_pred             HHHhcCC
Q psy17235         81 FWSRRSS   87 (170)
Q Consensus        81 ~a~~~~~   87 (170)
                      +...++.
T Consensus       140 l~~~~~~  146 (268)
T cd04170         140 LQEAFGR  146 (268)
T ss_pred             HHHHhCC
Confidence            4444554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK13768 GTPase; Provisional

Probab=98.62  E-value=1.6e-07  Score=73.50  Aligned_cols=100  Identities=14%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             eEEecCCcccc---ccchhhhccC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          2 QLWDTGGMERV---ASITSSYYKF-----AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         2 ~iwDt~G~e~~---~~~~~~~~~~-----ad~iilv~D~t~~~Sf~~~--~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      -+|||||+.++   ...++.+++.     ++++++|+|.+...+..+.  ..|+........+.|+++|.||+|+.. ..
T Consensus       100 ~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~-~~  178 (253)
T PRK13768        100 VLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS-EE  178 (253)
T ss_pred             EEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC-ch
Confidence            58999998763   3444444443     8999999999764433222  233333222235799999999999865 22


Q ss_pred             CCCHHHHHH----------------------------HHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMEN----------------------------FWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~----------------------------~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      ..  ++...                            ..++.+. ..++++|++++.|+++.
T Consensus       179 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L  238 (253)
T PRK13768        179 EL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDEL  238 (253)
T ss_pred             hH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHH
Confidence            11  11111                            1223342 35778999999999976

>PRK12288 GTPase RsgA; Reviewed

Probab=98.59  E-value=3.3e-07  Score=74.90  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHHHHHHhcCCCeEEEcccCCcc
Q psy17235         21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADMENFWSRRSSRRFKPQEVVEPQ   99 (170)
Q Consensus        21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~~~a~~~~~~~~~e~Sa~~~~   99 (170)
                      .|+|++++|++++...++..+..|+..+..  .++|++||+||+|+.. ... ....+........+. .++.+||+++.
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~-~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg~  194 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLD-DEGRAFVNEQLDIYRNIGY-RVLMVSSHTGE  194 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCC-cHHHHHHHHHHHHHHhCCC-eEEEEeCCCCc
Confidence            459999999999988999999999875432  4789999999999965 211 011222223345566 46678999999


Q ss_pred             hhhhH
Q psy17235        100 EVVEA  104 (170)
Q Consensus       100 ~v~~~  104 (170)
                      |+++.
T Consensus       195 GideL  199 (347)
T PRK12288        195 GLEEL  199 (347)
T ss_pred             CHHHH
Confidence            99875

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.58  E-value=5.3e-08  Score=70.85  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             CeEEecCCcccc------ccchhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERV------ASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~------~~~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+.|+||--.+      ..+...|+  ...|+++.|.|.++.+.--   ....++.+.  ++|+|++.||+|... .+.
T Consensus        49 ~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~a~-~~g  122 (156)
T PF02421_consen   49 VELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDEAE-RKG  122 (156)
T ss_dssp             EEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHHHH-HTT
T ss_pred             EEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHHHH-HcC
Confidence            368999995332      22444554  5899999999998754322   233444443  799999999999765 333


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.. +...+.+.+|+| .+.+||++++|+++.
T Consensus       123 ~~i-d~~~Ls~~Lg~p-vi~~sa~~~~g~~~L  152 (156)
T PF02421_consen  123 IEI-DAEKLSERLGVP-VIPVSARTGEGIDEL  152 (156)
T ss_dssp             EEE--HHHHHHHHTS--EEEEBTTTTBTHHHH
T ss_pred             CEE-CHHHHHHHhCCC-EEEEEeCCCcCHHHH
Confidence            332 366788888997 668899999999975

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.56  E-value=2.3e-07  Score=71.72  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             CeEEecCCcccccc-----chhhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CC
Q psy17235          1 MQLWDTGGMERVAS-----ITSSYYKFAEAAILVFSLDNAAS---FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TP   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~-----~~~~~~~~ad~iilv~D~t~~~S---f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~   71 (170)
                      |+|||+|||..+..     .....++++.++|+|+|+.+.+-   +..+...+..+.++.|++.+-+..+|+|+..+ .+
T Consensus        50 l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r  129 (232)
T PF04670_consen   50 LNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDER  129 (232)
T ss_dssp             EEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH
T ss_pred             EEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHH
Confidence            57999999976533     46778999999999999995443   44445666777777899999999999998542 11


Q ss_pred             CCCH----HHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         72 QVTE----ADMENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~----~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....    +...+.+...+  -..|+.||.-+ ..+.+|
T Consensus       130 ~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A  167 (232)
T PF04670_consen  130 EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEA  167 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHH
Confidence            1111    22333444444  23577788766 355544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.54  E-value=2.1e-07  Score=81.60  Aligned_cols=102  Identities=20%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-C--CHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-V--TEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v--~~~~   77 (170)
                      +.|+||||++.|..........+|++++|+|.+....-+. ...+..+... ...|++|+.||+|+.+.... .  -..+
T Consensus       106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~  183 (632)
T PRK05506        106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVAD  183 (632)
T ss_pred             EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHH
Confidence            3689999999886655556789999999999976432111 1111112222 23578899999998641111 1  1123


Q ss_pred             HHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      ...+.+..++.  .++.+||++|.|+.+.
T Consensus       184 i~~~~~~~~~~~~~iipiSA~~g~ni~~~  212 (632)
T PRK05506        184 YRAFAAKLGLHDVTFIPISALKGDNVVTR  212 (632)
T ss_pred             HHHHHHHcCCCCccEEEEecccCCCcccc
Confidence            33444555653  4788999999999853

>cd01859 MJ1464 MJ1464

Probab=98.52  E-value=4.1e-07  Score=65.76  Aligned_cols=86  Identities=9%  Similarity=-0.002  Sum_probs=55.4

Q ss_pred             cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235         12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK   91 (170)
Q Consensus        12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~   91 (170)
                      +..++.+..+++|++++|+|.+++.+.... .+...+..  .+.|+++|+||+|+.+ ....  .....+....+.+ ++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~-~~~~--~~~~~~~~~~~~~-~~   74 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVP-KEVL--EKWKSIKESEGIP-VV   74 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCC-HHHH--HHHHHHHHhCCCc-EE
Confidence            345778889999999999999886543321 22222211  3689999999999854 2111  1111233334444 56


Q ss_pred             EcccCCcchhhhH
Q psy17235         92 PQEVVEPQEVVEA  104 (170)
Q Consensus        92 e~Sa~~~~~v~~~  104 (170)
                      .+||+++.|+++.
T Consensus        75 ~iSa~~~~gi~~L   87 (156)
T cd01859          75 YVSAKERLGTKIL   87 (156)
T ss_pred             EEEccccccHHHH
Confidence            7899999999875

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.52  E-value=3e-07  Score=78.92  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..|......+++.+|++|+|+|.++.-. .....++.....  .++|+++++||+|+..
T Consensus        82 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence            4689999999888766778999999999999987421 123344443322  4789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09866 hypothetical protein; Provisional

Probab=98.49  E-value=1.8e-06  Score=74.97  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             eEEecCCccc-----cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          2 QLWDTGGMER-----VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         2 ~iwDt~G~e~-----~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      -|.||||-..     +..+....+..+|++++|+|.++..+... ....+.+.+...+.|+++|.||+|+.+ ...-..+
T Consensus       233 IFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~d-reeddkE  310 (741)
T PRK09866        233 TLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQD-RNSDDAD  310 (741)
T ss_pred             EEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCC-cccchHH
Confidence            4789999643     22223346899999999999988655443 223334444333479999999999864 2232344


Q ss_pred             HHHHHHHhc------CCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRR------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....+....      .....+++||+.|.|+++.
T Consensus       311 ~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~L  344 (741)
T PRK09866        311 QVRALISGTLMKGCITPQQIFPVSSMWGYLANRA  344 (741)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Confidence            555543322      2446888999999999976

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.46  E-value=3.9e-07  Score=76.83  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCC-CC-
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNKSDLEGT-TP-   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf---~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~-~~-   71 (170)
                      +.|.||||++.|..........+|++++|+|.+...   .|   ...+..+..+..  -++| +|++.||+|.... .. 
T Consensus        87 i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~  164 (446)
T PTZ00141         87 FTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQ  164 (446)
T ss_pred             EEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccchhhH
Confidence            468999999999777777788999999999988632   11   122222222222  2566 6789999995320 00 


Q ss_pred             ---CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235         72 ---QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVE  103 (170)
Q Consensus        72 ---~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~  103 (170)
                         .-..++...+....++    ..|+.+||.+|.|+.+
T Consensus       165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence               1112344555555554    4588999999999875

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.44  E-value=9.1e-07  Score=63.34  Aligned_cols=95  Identities=14%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             eEEecCCcc----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          2 QLWDTGGME----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         2 ~iwDt~G~e----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      .+.||||.-    .|..-.-..-.+||.+++|.|.+++.+.-.     +.+... -+.|+|=|.||+|+..  .....+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~-f~~pvIGVITK~Dl~~--~~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM-FNKPVIGVITKIDLPS--DDANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc-cCCCEEEEEECccCcc--chhhHHH
Confidence            368999942    222222223448999999999999765321     222222 2679999999999983  1345667


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.++.+..|+...+++|+.+|+||++.
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL  137 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEEL  137 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence            888888899988899999999999975

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.41  E-value=1.6e-06  Score=73.31  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADM   78 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~   78 (170)
                      .|.||||++.|....-.-...+|++++|+|.+... .-+. +..+. +.....-.|+|+|.||+|+.+ ...+  ..++.
T Consensus       120 ~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~-~~~~~~~~~ei  196 (460)
T PTZ00327        120 SFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVK-EAQAQDQYEEI  196 (460)
T ss_pred             eeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccC-HHHHHHHHHHH
Confidence            58999999999666556678999999999998641 2111 22222 222222346889999999864 1111  11233


Q ss_pred             HHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR--SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~--~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+.+..  ....++.+||++|.|++..
T Consensus       197 ~~~l~~~~~~~~~iipVSA~~G~nI~~L  224 (460)
T PTZ00327        197 RNFVKGTIADNAPIIPISAQLKYNIDVV  224 (460)
T ss_pred             HHHHHhhccCCCeEEEeeCCCCCCHHHH
Confidence            3333221  2235788999999999754

>KOG1489|consensus

Probab=98.41  E-value=2.4e-06  Score=68.19  Aligned_cols=100  Identities=14%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CeEEecCCcccc----ccchhhh---ccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERV----ASITSSY---YKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~----~~~~~~~---~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      +.+-|+||--+-    ..+-..+   ++.+++.++|.|++.+   .-++.++.+..++..+.   .+-|.++|+||+|++
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            357788884331    2233444   4579999999999998   77888877777776665   688999999999985


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      + .   ..+-...+++...-++.++.||++++++.+.
T Consensus       326 e-a---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~l  358 (366)
T KOG1489|consen  326 E-A---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEEL  358 (366)
T ss_pred             h-H---HHHHHHHHHHHcCCCcEEEeeeccccchHHH
Confidence            3 0   1122467888888888999999999998875

>PLN03126 Elongation factor Tu; Provisional

Probab=98.40  E-value=9.2e-07  Score=75.12  Aligned_cols=97  Identities=15%  Similarity=0.081  Sum_probs=64.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~   76 (170)
                      +.|+||||++.|......-+..+|++++|+|.++...-. ...++..+...  ++| +|++.||+|+.+ ....   -.+
T Consensus       146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl~~-~~~~~~~i~~  221 (478)
T PLN03126        146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQVD-DEELLELVEL  221 (478)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccccC-HHHHHHHHHH
Confidence            368999999998766666678999999999988653322 23344333333  677 778999999865 2111   112


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcchh
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQEV  101 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v  101 (170)
                      +...+.+..|+    ..|+..||.++.|+
T Consensus       222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        222 EVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            45555555543    35778899998665

>CHL00071 tufA elongation factor Tu

Probab=98.38  E-value=1.1e-06  Score=73.30  Aligned_cols=97  Identities=16%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEAD   77 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~~   77 (170)
                      .+.||||+..|......-+..+|++++|+|.+.... ......+..+..  .++| +|++.||+|+.+ ....   -.++
T Consensus        78 ~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~-~~~~~~~~~~~  153 (409)
T CHL00071         78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ--VGVPNIVVFLNKEDQVD-DEELLELVELE  153 (409)
T ss_pred             EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCEEEEEEEccCCCC-HHHHHHHHHHH
Confidence            589999999886655666789999999999886432 122233333332  2578 778999999865 2221   1235


Q ss_pred             HHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235         78 MENFWSRRSS----RRFKPQEVVEPQEVV  102 (170)
Q Consensus        78 ~~~~a~~~~~----~~~~e~Sa~~~~~v~  102 (170)
                      ...+.+..+.    ..++..||.+|.|+.
T Consensus       154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~  182 (409)
T CHL00071        154 VRELLSKYDFPGDDIPIVSGSALLALEAL  182 (409)
T ss_pred             HHHHHHHhCCCCCcceEEEcchhhccccc
Confidence            5556665553    458889999998764

>COG1159 Era GTPase [General function prediction only]

Probab=98.38  E-value=2.6e-06  Score=67.40  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             eEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          2 QLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         2 ~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~-~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      -+.||||-..        +.......+.++|.+++|.|.+++..-.  ..| ++.+..  .+.|++++.||+|... ...
T Consensus        57 IfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~--d~~il~~lk~--~~~pvil~iNKID~~~-~~~  131 (298)
T COG1159          57 IFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG--DEFILEQLKK--TKTPVILVVNKIDKVK-PKT  131 (298)
T ss_pred             EEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc--HHHHHHHHhh--cCCCeEEEEEccccCC-cHH
Confidence            4789999322        2334455678999999999998854322  123 233333  3689999999999876 222


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .-......+.....+...++.||++|.|++..
T Consensus       132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L  163 (298)
T COG1159         132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTL  163 (298)
T ss_pred             HHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence            11333444455556677889999999999864

>PRK12740 elongation factor G; Reviewed

Probab=98.35  E-value=1.9e-06  Score=76.08  Aligned_cols=81  Identities=12%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+|||||+..|...+..+++.+|++++|+|.+...+......|. .+..  .++|+++|+||+|+.. .  ...+...+
T Consensus        62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~~-~--~~~~~~~~  135 (668)
T PRK12740         62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRAG-A--DFFRVLAQ  135 (668)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCCC-C--CHHHHHHH
Confidence            478999999988888888999999999999999877766544443 3332  3789999999999865 2  22333444


Q ss_pred             HHHhcCC
Q psy17235         81 FWSRRSS   87 (170)
Q Consensus        81 ~a~~~~~   87 (170)
                      +...++.
T Consensus       136 l~~~l~~  142 (668)
T PRK12740        136 LQEKLGA  142 (668)
T ss_pred             HHHHHCC
Confidence            5554554

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.28  E-value=5.6e-06  Score=66.93  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=28.0

Q ss_pred             CeEEecCCc----cccccchhhh---ccCCcEEEEEEeCCC
Q psy17235          1 MQLWDTGGM----ERVASITSSY---YKFAEAAILVFSLDN   34 (170)
Q Consensus         1 l~iwDt~G~----e~~~~~~~~~---~~~ad~iilv~D~t~   34 (170)
                      +++|||||.    +.+..+...+   +++||++++|+|++.
T Consensus        71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            579999998    5566666665   899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1144|consensus

Probab=98.27  E-value=4.3e-06  Score=73.11  Aligned_cols=60  Identities=20%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      |.+.||||++.|..++......+|.+|+|+|+..   +++.+++..+    +.  .+.|+||..||+|.
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL----R~--rktpFivALNKiDR  604 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL----RM--RKTPFIVALNKIDR  604 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHH----Hh--cCCCeEEeehhhhh
Confidence            4589999999999999999999999999999975   6676665322    11  48999999999995

>PRK00049 elongation factor Tu; Reviewed

Probab=98.26  E-value=3.9e-06  Score=69.78  Aligned_cols=95  Identities=16%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCC---CHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQV---TEAD   77 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v---~~~~   77 (170)
                      .+.||||+..|.......+..+|++++|+|.+....- ....++..+...  ++|.+ ++.||+|+.+ ....   -..+
T Consensus        78 ~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~--g~p~iiVvvNK~D~~~-~~~~~~~~~~~  153 (396)
T PRK00049         78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDMVD-DEELLELVEME  153 (396)
T ss_pred             EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc--CCCEEEEEEeecCCcc-hHHHHHHHHHH
Confidence            5889999998866555667899999999999874322 222333333332  57875 5799999864 2111   1123


Q ss_pred             HHHHHHhcCC----CeEEEcccCCcch
Q psy17235         78 MENFWSRRSS----RRFKPQEVVEPQE  100 (170)
Q Consensus        78 ~~~~a~~~~~----~~~~e~Sa~~~~~  100 (170)
                      ...+....+.    ..++.+||.++.+
T Consensus       154 i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        154 VRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHhcCCCccCCcEEEeecccccC
Confidence            4444444443    3577899998865

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.25  E-value=3e-06  Score=60.36  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             hhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEccc
Q psy17235         18 SYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEV   95 (170)
Q Consensus        18 ~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa   95 (170)
                      ..+..+|++++|+|.+++.+..  .+..|+...   .++.|+++|.||+|+.. ...  ..+..++.+..+. .++.+||
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~-~~~--~~~~~~~~~~~~~-~ii~iSa   79 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLT-EEQ--RKAWAEYFKKEGI-VVVFFSA   79 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCC-HHH--HHHHHHHHHhcCC-eEEEEEe
Confidence            3577899999999999987654  444555432   25789999999999854 221  1233344445554 4667899


Q ss_pred             CCcch
Q psy17235         96 VEPQE  100 (170)
Q Consensus        96 ~~~~~  100 (170)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.24  E-value=2.7e-06  Score=75.69  Aligned_cols=65  Identities=22%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||+..|.......++.+|++|+|+|.++.-..+....|. ....  .+.|+++++||+|...
T Consensus        88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH--cCCCEEEEEEChhccc
Confidence            468999999999888888999999999999998743322222232 1212  3678899999999854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.19  E-value=1e-05  Score=67.44  Aligned_cols=93  Identities=14%  Similarity=0.098  Sum_probs=62.7

Q ss_pred             CeEEecCCccccc---------cchhhhccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERVA---------SITSSYYKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~~---------~~~~~~~~~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      |.+.||+|-+.-.         ......+..||++|||+|...--+-  +.+-+|+.     ..+.|++||.||+|-.. 
T Consensus        53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~~~-  126 (444)
T COG1160          53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDNLK-  126 (444)
T ss_pred             EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccCch-
Confidence            5689999966322         1233446789999999998763332  22233433     24699999999999643 


Q ss_pred             CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                           .++...-.-++|+...+..||..|.|+.+.
T Consensus       127 -----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160         127 -----AEELAYEFYSLGFGEPVPISAEHGRGIGDL  156 (444)
T ss_pred             -----hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence                 223222334578877888999999999964

>PRK12739 elongation factor G; Reviewed

Probab=98.18  E-value=3.7e-06  Score=74.53  Aligned_cols=65  Identities=15%  Similarity=0.098  Sum_probs=50.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.++||||+..|...+...++.+|++++|+|.++...-+... .+..+..  .+.|++++.||+|+..
T Consensus        75 i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         75 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             EEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence            468999999988888888999999999999998764433322 2233333  3689999999999875

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.18  E-value=2.7e-05  Score=58.58  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=40.6

Q ss_pred             CeEEecCCccccccchhh-----hccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSS-----YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~-----~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.+|||||..........     .+.++|+++++.|    .+|... ..|+..+...  +.|+++|+||+|+.
T Consensus        54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~  120 (197)
T cd04104          54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRD  120 (197)
T ss_pred             ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccch
Confidence            479999997543222223     3678999988843    233333 3566666554  57999999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.17  E-value=2.2e-05  Score=65.58  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=60.1

Q ss_pred             CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++.||+|-..-..        -....+..||.+++|+|.+.+.+-... ..+.   ....+.|+++|.||.|+.. ...
T Consensus       267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~-~~~  341 (454)
T COG0486         267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVS-KIE  341 (454)
T ss_pred             EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhccc-ccc
Confidence            47899999653222        224457799999999999986332221 1111   2226799999999999977 222


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..  .   . +..+-..+...||++++|++..
T Consensus       342 ~~--~---~-~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         342 LE--S---E-KLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             cc--h---h-hccCCCceEEEEecCccCHHHH
Confidence            11  1   1 1122235778899999999975

>PRK13796 GTPase YqeH; Provisional

Probab=98.11  E-value=1.6e-05  Score=65.52  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HHhcCCC--eEEEc
Q psy17235         21 KFAE-AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WSRRSSR--RFKPQ   93 (170)
Q Consensus        21 ~~ad-~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~~~~~~--~~~e~   93 (170)
                      ..++ .+++|+|+.|..     ..|.+.+.+...+.|+++|+||+|+..  +.+..+....|    ++..|+.  .++.+
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g~~~~~v~~v  139 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELGLRPVDVVLI  139 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence            3445 899999998854     246666666556789999999999964  34444444444    5556653  46789


Q ss_pred             ccCCcchhhhH
Q psy17235         94 EVVEPQEVVEA  104 (170)
Q Consensus        94 Sa~~~~~v~~~  104 (170)
                      ||+++.|+++.
T Consensus       140 SAk~g~gI~eL  150 (365)
T PRK13796        140 SAQKGHGIDEL  150 (365)
T ss_pred             ECCCCCCHHHH
Confidence            99999999976

>KOG1532|consensus

Probab=98.03  E-value=0.00017  Score=56.86  Aligned_cols=66  Identities=21%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             eEEecCCccc-ccc-----c-hhhh-ccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMER-VAS-----I-TSSY-YKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~-~~~-----~-~~~~-~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      .|.|||||-. |.-     + .... -...-++++|.|..   +|.+|-+=.-+--.+ -+....|+|++.||+|+.+
T Consensus       119 ~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi-lyktklp~ivvfNK~Dv~d  195 (366)
T KOG1532|consen  119 VLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI-LYKTKLPFIVVFNKTDVSD  195 (366)
T ss_pred             EEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH-HHhccCCeEEEEecccccc
Confidence            4789999964 211     1 1111 12455677777753   344443211111111 1116899999999999976

>cd01858 NGP_1 NGP-1

Probab=98.02  E-value=2.3e-05  Score=56.73  Aligned_cols=77  Identities=13%  Similarity=0.021  Sum_probs=49.1

Q ss_pred             hccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC--CC-eEEEc
Q psy17235         19 YYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS--SR-RFKPQ   93 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~~S--f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~--~~-~~~e~   93 (170)
                      .+.++|.+++|.|.+++.+  ...+..++.   ....+.|+++|.||+|+.. .     ++...+...+.  .+ ..+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~-~-----~~~~~~~~~~~~~~~~~~~~i   75 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVP-T-----WVTARWVKILSKEYPTIAFHA   75 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCC-H-----HHHHHHHHHHhcCCcEEEEEe
Confidence            4678999999999998743  223333332   2224689999999999854 2     22223333321  12 23568


Q ss_pred             ccCCcchhhhH
Q psy17235         94 EVVEPQEVVEA  104 (170)
Q Consensus        94 Sa~~~~~v~~~  104 (170)
                      ||+++.|+.+.
T Consensus        76 Sa~~~~~~~~L   86 (157)
T cd01858          76 SINNPFGKGSL   86 (157)
T ss_pred             eccccccHHHH
Confidence            99999998864

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins

Probab=98.01  E-value=6.2e-05  Score=56.88  Aligned_cols=63  Identities=35%  Similarity=0.502  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHh
Q psy17235        102 VEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLA  164 (170)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  164 (170)
                      +.+....+.++..|..+++.++.++.+|..+|+.+|+++|.+.+|.+.+++|.+...+++|+.
T Consensus       135 ~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~~  197 (198)
T cd07630         135 EQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTLE  197 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            345557777889999999999999999999999999999999999999999999999999985

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd01850 CDC_Septin CDC/Septin

Probab=98.01  E-value=4.6e-06  Score=66.17  Aligned_cols=69  Identities=7%  Similarity=0.039  Sum_probs=39.5

Q ss_pred             hhcc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHHHHHHHhcCCCeE
Q psy17235         18 SYYK--FAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADMENFWSRRSSRRF   90 (170)
Q Consensus        18 ~~~~--~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~~~~a~~~~~~~~   90 (170)
                      .++.  .+|+++++++.+.. .+... ...+..+.   ..+|+++|+||+|+... ..........+.+..+++..|
T Consensus       108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~  180 (276)
T cd01850         108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIY  180 (276)
T ss_pred             ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceE
Confidence            4444  36677777766541 12111 12233333   36999999999998441 122334556677777787654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.96  E-value=4.1e-05  Score=62.12  Aligned_cols=101  Identities=22%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~   76 (170)
                      |-|-|||||+.|....-.--..||..|+++|... .-++..++. ..|.....=.-+||..||+||.+ ..+-..    +
T Consensus        88 FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRH-s~I~sLLGIrhvvvAVNKmDLvd-y~e~~F~~I~~  164 (431)
T COG2895          88 FIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRH-SFIASLLGIRHVVVAVNKMDLVD-YSEEVFEAIVA  164 (431)
T ss_pred             EEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHH-HHHHHHhCCcEEEEEEeeecccc-cCHHHHHHHHH
Confidence            3578999999997766666778999999999732 222222221 11111112234778899999987 333222    3


Q ss_pred             HHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      +-..||.+++.  ..|++.||..|.||...
T Consensus       165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~  194 (431)
T COG2895         165 DYLAFAAQLGLKDVRFIPISALLGDNVVSK  194 (431)
T ss_pred             HHHHHHHHcCCCcceEEechhccCCccccc
Confidence            45678888876  47999999999998754

>PLN03127 Elongation factor Tu; Provisional

Probab=97.96  E-value=2.7e-05  Score=65.79  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~   68 (170)
                      .+.||||++.|......-...+|++++|+|.++...-+ ....+..+..  .++| +|++.||+|+.+
T Consensus       127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~--~gip~iIvviNKiDlv~  191 (447)
T PLN03127        127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ--VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             EEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence            58999999988654444566799999999987643211 1222223332  3688 578899999864

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.94  E-value=1.7e-05  Score=61.70  Aligned_cols=101  Identities=15%  Similarity=0.088  Sum_probs=54.7

Q ss_pred             eEEecCCccccccchhhhc--------cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYY--------KFAEAAILVFSLDN---AASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~--------~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~   69 (170)
                      -|+|||||.++...|....        ...-++++++|...   +..|-.  .++-.+.-.. -+.|.|.|.||+|+.+ 
T Consensus        94 ~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~~-  170 (238)
T PF03029_consen   94 LLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLLS-  170 (238)
T ss_dssp             EEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS--
T ss_pred             EEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCccc-
Confidence            4899999998777666655        56778999999764   444433  2332222111 4799999999999865 


Q ss_pred             CC----------------------CCCHHHHHHHHHhcCCC-eEEEcccCCcchhhhHH
Q psy17235         70 TP----------------------QVTEADMENFWSRRSSR-RFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~----------------------~v~~~~~~~~a~~~~~~-~~~e~Sa~~~~~v~~~~  105 (170)
                      ..                      .--.++..++..+++.. .|...|+.+++++.+..
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~  229 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELL  229 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHH
Confidence            11                      00001222333444555 79999999999999763

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.94  E-value=1.4e-05  Score=66.35  Aligned_cols=66  Identities=27%  Similarity=0.288  Sum_probs=52.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl   66 (170)
                      +.++|+|||..-+.-|.+++.+++++|+|.++++-          ..+......+..+....  .++|+||+.||.|+
T Consensus       238 ~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  238 FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            47899999998899999999999999999998642          23544455666666554  78999999999996

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.94  E-value=0.0001  Score=53.24  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH---HHhcCCCeEEEcccCCcch
Q psy17235         24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF---WSRRSSRRFKPQEVVEPQE  100 (170)
Q Consensus        24 d~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~---a~~~~~~~~~e~Sa~~~~~  100 (170)
                      |.+++|+|.+++.+...  .|+........+.|+++|.||+|+.. .     ++...+   .+.......+.+||+++.+
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~-~-----~~~~~~~~~~~~~~~~~ii~vSa~~~~g   72 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVP-K-----EVLRKWLAYLRHSYPTIPFKISATNGQG   72 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCC-H-----HHHHHHHHHHHhhCCceEEEEeccCCcC
Confidence            68999999999876653  24431111125799999999999854 1     222222   1222233466789999999


Q ss_pred             hhhH
Q psy17235        101 VVEA  104 (170)
Q Consensus       101 v~~~  104 (170)
                      +.+.
T Consensus        73 i~~L   76 (155)
T cd01849          73 IEKK   76 (155)
T ss_pred             hhhH
Confidence            8875

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG3886|consensus

Probab=97.94  E-value=1.8e-05  Score=60.82  Aligned_cols=68  Identities=29%  Similarity=0.511  Sum_probs=54.0

Q ss_pred             CeEEecCCcccc-----ccchhhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERV-----ASITSSYYKFAEAAILVFSLDNAAS---FHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~-----~~~~~~~~~~ad~iilv~D~t~~~S---f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      |.+||++||+.+     .......+++.+++|+|||+...+-   |...+..++.+.++.|...+.+..+|.|+..
T Consensus        55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence            568999999853     3356777999999999999998753   4444566677778879999999999999864

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.93  E-value=0.00012  Score=61.21  Aligned_cols=108  Identities=18%  Similarity=0.083  Sum_probs=69.0

Q ss_pred             eEEecCCc----------cccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235          2 QLWDTGGM----------ERVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         2 ~iwDt~G~----------e~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~   70 (170)
                      .+.||+|-          |.|...+ ...+..+|.+++|.|.+.+-+-++.+ ....+.+  ...|+|+|.||.|+.+ .
T Consensus       229 ~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~-~  304 (444)
T COG1160         229 VLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVE-E  304 (444)
T ss_pred             EEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCC-c
Confidence            58899994          3443332 33467899999999999987765532 2222222  4788999999999876 3


Q ss_pred             CCCCHHHH----HHHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHH
Q psy17235         71 PQVTEADM----ENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACD  113 (170)
Q Consensus        71 ~~v~~~~~----~~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~  113 (170)
                      ...+.++.    ...-...+....+.+||+++.++...+.....++.
T Consensus       305 ~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         305 DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            33444433    22233334445666899999999986444433333

>TIGR00101 ureG urease accessory protein UreG

Probab=97.89  E-value=7.9e-05  Score=56.34  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             EEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE--EEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv--vlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+|.|..--....+   .-+|++|.|+|+++..+...  .+.       +++..  ++++||+|+.+ ...-..+...+
T Consensus        96 iIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~-~~~~~~~~~~~  162 (199)
T TIGR00101        96 FIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAP-MVGADLGVMER  162 (199)
T ss_pred             EEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccc-cccccHHHHHH
Confidence            566777321112222   12688999999987666321  111       23444  88999999964 21222333444


Q ss_pred             HHHhc-CCCeEEEcccCCcchhhhHH
Q psy17235         81 FWSRR-SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        81 ~a~~~-~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ..+.+ ....++++||++|+|+++.+
T Consensus       163 ~~~~~~~~~~i~~~Sa~~g~gi~el~  188 (199)
T TIGR00101       163 DAKKMRGEKPFIFTNLKTKEGLDTVI  188 (199)
T ss_pred             HHHHhCCCCCEEEEECCCCCCHHHHH
Confidence            44443 33567899999999999763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.87  E-value=0.00015  Score=58.60  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             eEEecCCccc----cccchhhhc---cCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMER----VASITSSYY---KFAEAAILVFSLDNAA---SFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~----~~~~~~~~~---~~ad~iilv~D~t~~~---Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~   68 (170)
                      .+-|+||--.    -..+-..++   ..+.+++.|.|++..+   -.++......++..|.   .+-|.+||+||+|+..
T Consensus       210 v~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~  289 (369)
T COG0536         210 VVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL  289 (369)
T ss_pred             EEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence            4678887432    122444443   4689999999998654   3555555666666665   6889999999999654


Q ss_pred             CCCCCCHHHHHHHH----HhcCCCeEEEcccCCcchhhhH
Q psy17235         69 TTPQVTEADMENFW----SRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        69 ~~~~v~~~~~~~~a----~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                           +.++.+.++    +..+...+...||.+++++++.
T Consensus       290 -----~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L  324 (369)
T COG0536         290 -----DEEELEELKKALAEALGWEVFYLISALTREGLDEL  324 (369)
T ss_pred             -----CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHH
Confidence                 334444443    3334332222899999999975

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=6.3e-05  Score=62.08  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~---~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~   74 (170)
                      |.|.|+||+..|..-.-.-...||+.|||.|..+.+   .|.   ..+.. ..+.....=--+|++.||+|+.+ ..+-.
T Consensus        87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~~lIVavNKMD~v~-wde~r  164 (428)
T COG5256          87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIKQLIVAVNKMDLVS-WDEER  164 (428)
T ss_pred             EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCceEEEEEEcccccc-cCHHH
Confidence            578999999988776666778999999999998763   121   11111 11222222335778899999876 33322


Q ss_pred             HH----HHHHHHHhcCCC----eEEEcccCCcchhhhH
Q psy17235         75 EA----DMENFWSRRSSR----RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~----~~~~~a~~~~~~----~~~e~Sa~~~~~v~~~  104 (170)
                      .+    +...+.+..|..    .|+.+|+..|.|+.+-
T Consensus       165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            22    233366666663    4999999999998864

>cd01856 YlqF YlqF

Probab=97.81  E-value=5.2e-05  Score=55.69  Aligned_cols=84  Identities=12%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235         12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK   91 (170)
Q Consensus        12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~   91 (170)
                      ........+.++|.+++|+|.+++.+-... .+    .....+.|+++|.||+|+.+ ...+  ....++.+..+ ..++
T Consensus         9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~k~~ilVlNK~Dl~~-~~~~--~~~~~~~~~~~-~~vi   79 (171)
T cd01856           9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGNKPRIIVLNKADLAD-PKKT--KKWLKYFESKG-EKVL   79 (171)
T ss_pred             HHHHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcCCCEEEEEehhhcCC-hHHH--HHHHHHHHhcC-CeEE
Confidence            333445668899999999999877543221 12    22224579999999999864 2111  11112222222 3456


Q ss_pred             EcccCCcchhhhH
Q psy17235         92 PQEVVEPQEVVEA  104 (170)
Q Consensus        92 e~Sa~~~~~v~~~  104 (170)
                      .+||+++.|+++.
T Consensus        80 ~iSa~~~~gi~~L   92 (171)
T cd01856          80 FVNAKSGKGVKKL   92 (171)
T ss_pred             EEECCCcccHHHH
Confidence            7899999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0082|consensus

Probab=97.80  E-value=3.8e-05  Score=62.56  Aligned_cols=68  Identities=24%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA----------SFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~----------Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      +.++|+|||..-+.-|.+++.+++++|+|.++++-+          ........+..|.+..  .+.++||..||.|+-.
T Consensus       197 f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFe  276 (354)
T KOG0082|consen  197 FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFE  276 (354)
T ss_pred             eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHH
Confidence            578999999988899999999999999999988532          1222234555665555  7899999999999843

>PRK00007 elongation factor G; Reviewed

Probab=97.79  E-value=6.1e-05  Score=66.95  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=59.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.+.||||+..|..-....++.+|++++|+|.+..-.-+...-| ..+..  .+.|++++.||+|+.+ ..  ...-..+
T Consensus        77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~--~~~p~iv~vNK~D~~~-~~--~~~~~~~  150 (693)
T PRK00007         77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK--YKVPRIAFVNKMDRTG-AD--FYRVVEQ  150 (693)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH--cCCCEEEEEECCCCCC-CC--HHHHHHH
Confidence            46899999988866566678899999999998765444433333 23333  3688999999999875 22  2223334


Q ss_pred             HHHhcCC---CeEEEcccCCc
Q psy17235         81 FWSRRSS---RRFKPQEVVEP   98 (170)
Q Consensus        81 ~a~~~~~---~~~~e~Sa~~~   98 (170)
                      +...++.   +..+.+|+.++
T Consensus       151 i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        151 IKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHhCCCeeeEEecCccCCc
Confidence            4444444   33445566555

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.78  E-value=0.00016  Score=58.09  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CeEEecCCcc-----ccccc---hhhhcc-CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGME-----RVASI---TSSYYK-FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e-----~~~~~---~~~~~~-~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +|+.||||-=     ....+   .-..++ -+++++++||.+..  -|.+.=..++.++..... .|+++|.||.|+.+ 
T Consensus       217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~-  294 (346)
T COG1084         217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIAD-  294 (346)
T ss_pred             EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccc-
Confidence            5899999931     11111   111122 36889999998864  456655577888877764 89999999999875 


Q ss_pred             CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...  .+++......-|......+++..+.+++.+
T Consensus       295 ~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  327 (346)
T COG1084         295 EEK--LEEIEASVLEEGGEEPLKISATKGCGLDKL  327 (346)
T ss_pred             hhH--HHHHHHHHHhhccccccceeeeehhhHHHH
Confidence            222  234444455555554555677777777755

>KOG0090|consensus

Probab=97.74  E-value=0.00019  Score=54.50  Aligned_cols=68  Identities=22%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             CeEEecCCccccccchhhhcc---CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYK---FAEAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~---~ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~   68 (170)
                      +++.|.||+++.+.-...|+.   .+-+++||+|.. .+.....+..++-.+...+    ..+|++++.||.|+..
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            368999999998776666666   799999999975 3455666666665554333    6789999999999864

>COG2262 HflX GTPases [General function prediction only]

Probab=97.71  E-value=0.00035  Score=57.72  Aligned_cols=77  Identities=13%  Similarity=-0.010  Sum_probs=53.5

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcc
Q psy17235         21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQ   99 (170)
Q Consensus        21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~   99 (170)
                      ..||.++.|.|.++|...+.+..-..-+.+.. .++|+|+|.||+|+..+..     .........  +..+..||++|.
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~--~~~v~iSA~~~~  342 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGS--PNPVFISAKTGE  342 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcC--CCeEEEEeccCc
Confidence            47999999999999977777665555555544 6799999999999754111     111122222  345567999999


Q ss_pred             hhhhH
Q psy17235        100 EVVEA  104 (170)
Q Consensus       100 ~v~~~  104 (170)
                      |++..
T Consensus       343 gl~~L  347 (411)
T COG2262         343 GLDLL  347 (411)
T ss_pred             CHHHH
Confidence            99864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.65  E-value=7e-05  Score=67.89  Aligned_cols=63  Identities=17%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      .|.||||+..|..-....++.+|++|+|+|.+..-......-|. .+..  .++|+|++.||+|..
T Consensus       101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116        101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH--CCCCEEEEEECCccc
Confidence            68999999999887778889999999999998764444333332 2222  478999999999986

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.64  E-value=0.00012  Score=65.53  Aligned_cols=64  Identities=20%  Similarity=0.075  Sum_probs=47.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      .|.||||+..|.......++.+|++|+|+|....-.-+...-|.. ...  .+.|.|++.||+|+..
T Consensus        90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~--~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR--ERVKPVLFINKVDRLI  153 (731)
T ss_pred             EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH--cCCCeEEEEECchhhc
Confidence            578999999998878888999999999999887543333233332 222  2567899999999763

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00013  Score=50.97  Aligned_cols=93  Identities=17%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             EEecCCc----cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          3 LWDTGGM----ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         3 iwDt~G~----e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ..||||.    ..+.+-.-.....+|++++|-..++++|--.     +-+... ...|+|=|.+|.||.+ ...  -+..
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLae-d~d--I~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAE-DAD--ISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc-cccceEEEEecccccc-hHh--HHHH
Confidence            3588883    2222222334568999999999999876311     111111 2456888999999986 223  3456


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++|..+-|....+++|+.++.||++.
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l  137 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEEL  137 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHH
Confidence            67888889989999999999999976

>KOG1707|consensus

Probab=97.61  E-value=0.00029  Score=60.43  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235         21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE   97 (170)
Q Consensus        21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~   97 (170)
                      ..+|++.++||++++.||..+...+...... ..+|+++|+.|+|+.. ..+..+-+-.+++++++++.-...|.++
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe-~~Q~~~iqpde~~~~~~i~~P~~~S~~~  568 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDE-VPQRYSIQPDEFCRQLGLPPPIHISSKT  568 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccch-hhhccCCChHHHHHhcCCCCCeeeccCC
Confidence            5689999999999999999887665543333 6899999999999976 4433333337899999997766667775

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00029  Score=61.42  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++.|.||--.+.      .....|+.  .+|+++-|.|.++.+.=-.+   --++.+.  +.|++++.|+.|... .+-
T Consensus        52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl---tlQLlE~--g~p~ilaLNm~D~A~-~~G  125 (653)
T COG0370          52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL---TLQLLEL--GIPMILALNMIDEAK-KRG  125 (653)
T ss_pred             EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH---HHHHHHc--CCCeEEEeccHhhHH-hcC
Confidence            4689999954332      23444443  57999999999986542111   1122332  789999999999876 444


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +. -+..++.+..|+| ..++||++|.|+++.
T Consensus       126 i~-ID~~~L~~~LGvP-Vv~tvA~~g~G~~~l  155 (653)
T COG0370         126 IR-IDIEKLSKLLGVP-VVPTVAKRGEGLEEL  155 (653)
T ss_pred             Cc-ccHHHHHHHhCCC-EEEEEeecCCCHHHH
Confidence            33 3456688889997 557899999998875

>KOG1423|consensus

Probab=97.54  E-value=0.00035  Score=55.92  Aligned_cols=65  Identities=17%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             eEEecCCccc------ccc------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMER------VAS------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~------~~~------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      -++||||--.      +.-      --.....+||.+++|+|+++....-+. ..+..+..+ .++|-+||.||.|...
T Consensus       123 vf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y-s~ips~lvmnkid~~k  199 (379)
T KOG1423|consen  123 VFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY-SKIPSILVMNKIDKLK  199 (379)
T ss_pred             EEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH-hcCCceeeccchhcch
Confidence            5899999321      111      112335679999999999974433221 223333333 4799999999999754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.53  E-value=0.00054  Score=54.28  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=50.2

Q ss_pred             hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH---HhcCCCeEEE
Q psy17235         16 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW---SRRSSRRFKP   92 (170)
Q Consensus        16 ~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a---~~~~~~~~~e   92 (170)
                      ....+..+|.+++|+|..++.+.+.  .++.+..   .+.|+++|.||+|+.+ .     ++...+.   +..+. .++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~-~-----~~~~~~~~~~~~~~~-~vi~   82 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLAD-P-----AVTKQWLKYFEEKGI-KALA   82 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCC-H-----HHHHHHHHHHHHcCC-eEEE
Confidence            3456789999999999988765433  1222222   3689999999999854 1     1122222   22333 3567


Q ss_pred             cccCCcchhhhH
Q psy17235         93 QEVVEPQEVVEA  104 (170)
Q Consensus        93 ~Sa~~~~~v~~~  104 (170)
                      +||+++.++.+.
T Consensus        83 iSa~~~~gi~~L   94 (276)
T TIGR03596        83 INAKKGKGVKKI   94 (276)
T ss_pred             EECCCcccHHHH
Confidence            899999998764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.53  E-value=0.00045  Score=41.60  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235         22 FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus        22 ~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      -.+++++++|.+..  -|.+.=...+.+++...++.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            36789999999875  456655577888888878999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.51  E-value=0.00048  Score=57.94  Aligned_cols=93  Identities=10%  Similarity=0.054  Sum_probs=61.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~   76 (170)
                      +.|.|||||..|..-....+.-.|++++++|...   |++=    -.+.....  .+.+.|||.||+|.++ .|+- -.+
T Consensus        70 INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr----FVlkKAl~--~gL~PIVVvNKiDrp~-Arp~~Vvd  142 (603)
T COG1217          70 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR----FVLKKALA--LGLKPIVVINKIDRPD-ARPDEVVD  142 (603)
T ss_pred             EEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh----hhHHHHHH--cCCCcEEEEeCCCCCC-CCHHHHHH
Confidence            4689999999999988889999999999999876   3331    12222222  3677788899999987 3331 123


Q ss_pred             HHHHHHHhc-------CCCeEEEcccCCcchh
Q psy17235         77 DMENFWSRR-------SSRRFKPQEVVEPQEV  101 (170)
Q Consensus        77 ~~~~~a~~~-------~~~~~~e~Sa~~~~~v  101 (170)
                      +...+--++       .+|.. -.|+++|..-
T Consensus       143 ~vfDLf~~L~A~deQLdFPiv-YAS~~~G~a~  173 (603)
T COG1217         143 EVFDLFVELGATDEQLDFPIV-YASARNGTAS  173 (603)
T ss_pred             HHHHHHHHhCCChhhCCCcEE-EeeccCceec
Confidence            333333333       34433 3588887543

>KOG0468|consensus

Probab=97.51  E-value=0.00011  Score=63.95  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      ++|.|||||-.|..-....++-+||+++|+|+...-+++.-+ .+....+  .+.|+++|.||.|.
T Consensus       199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR  261 (971)
T ss_pred             eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence            578999999999888888899999999999999888876432 2222222  57999999999995

>PTZ00416 elongation factor 2; Provisional

Probab=97.50  E-value=0.00013  Score=66.04  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.|.||||+..|..-....++.+|++|+|+|.++.-.-..-.-| ..+..  .++|+|++.||+|+.
T Consensus        94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence            35899999999877777788999999999999875433332223 33333  368999999999986

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.48  E-value=0.004  Score=50.72  Aligned_cols=92  Identities=12%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|.||+|--.-   .......+|.+++|.+....+.+..+.   ..+.+    +.-++|.||+|+.. .... .....++
T Consensus       152 viieT~Gv~qs---~~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~-~~~a-~~~~~el  219 (332)
T PRK09435        152 ILVETVGVGQS---ETAVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDN-KTAA-RRAAAEY  219 (332)
T ss_pred             EEEECCCCccc---hhHHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccc-hhHH-HHHHHHH
Confidence            47889885421   112456799999996644444443322   22222    22378999999865 2211 1111122


Q ss_pred             HHhcC---------CCeEEEcccCCcchhhhHH
Q psy17235         82 WSRRS---------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        82 a~~~~---------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ...+.         .+.++.+||+++.||++..
T Consensus       220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~  252 (332)
T PRK09435        220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW  252 (332)
T ss_pred             HHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence            22221         1457789999999999873

>KOG0705|consensus

Probab=97.47  E-value=0.00042  Score=59.22  Aligned_cols=89  Identities=13%  Similarity=0.311  Sum_probs=71.8

Q ss_pred             hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCC-CCCCCHHHHHHHHHhcCCCeEEE
Q psy17235         16 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGT-TPQVTEADMENFWSRRSSRRFKP   92 (170)
Q Consensus        16 ~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~-~~~v~~~~~~~~a~~~~~~~~~e   92 (170)
                      -..|..+.|++|+||.+.+..||+.+..+...+..+.  ..+|++++|++-=...+ .+.+....+.+++..+.-..|++
T Consensus        89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e  168 (749)
T KOG0705|consen   89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE  168 (749)
T ss_pred             hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence            3557788999999999999999999988777766554  68999999988544321 56777788888888777777888


Q ss_pred             cccCCcchhhhH
Q psy17235         93 QEVVEPQEVVEA  104 (170)
Q Consensus        93 ~Sa~~~~~v~~~  104 (170)
                      +.+.+|.||..+
T Consensus       169 t~atyGlnv~rv  180 (749)
T KOG0705|consen  169 TCATYGLNVERV  180 (749)
T ss_pred             cchhhhhhHHHH
Confidence            999999999987

>PRK09602 translation-associated GTPase; Reviewed

Probab=97.46  E-value=0.00092  Score=55.74  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             CeEEecCCc----cccccchhhh---ccCCcEEEEEEeCC
Q psy17235          1 MQLWDTGGM----ERVASITSSY---YKFAEAAILVFSLD   33 (170)
Q Consensus         1 l~iwDt~G~----e~~~~~~~~~---~~~ad~iilv~D~t   33 (170)
                      +++|||||.    .....+...+   ++++|++++|+|+.
T Consensus        74 i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         74 VELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             EEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            479999994    4455566667   88999999999997

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.41  E-value=0.0013  Score=49.47  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             eEEecCC----------ccccccchhhhccC---CcEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          2 QLWDTGG----------MERVASITSSYYKF---AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         2 ~iwDt~G----------~e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~--~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      .+.|.||          ++.+..+...|++.   -.+++++.|...+-.-.+.  -+|+.+     .++|++|+.||+|.
T Consensus        73 ~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DK  147 (200)
T COG0218          73 RLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADK  147 (200)
T ss_pred             EEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEcccc
Confidence            5789998          45666777778764   5788899998876554332  234333     48999999999996


Q ss_pred             CCCCCCCCHHHHHHHHHhcCC----C-eEEEcccCCcchhhhH
Q psy17235         67 EGTTPQVTEADMENFWSRRSS----R-RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        67 ~~~~~~v~~~~~~~~a~~~~~----~-~~~e~Sa~~~~~v~~~  104 (170)
                      .. ..... ......++..+.    . .+...|+.++.|+++.
T Consensus       148 i~-~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l  188 (200)
T COG0218         148 LK-KSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDEL  188 (200)
T ss_pred             CC-hhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHH
Confidence            54 11111 112233333322    1 2556688888888875

>PRK01889 GTPase RsgA; Reviewed

Probab=97.39  E-value=0.0013  Score=54.18  Aligned_cols=78  Identities=12%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH-hcCCCeEEEcccCCc
Q psy17235         20 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS-RRSSRRFKPQEVVEP   98 (170)
Q Consensus        20 ~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~   98 (170)
                      ..++|.+++|+++..+-+...+..++..+..  .++|.+||.||+||.+ .   ..+....+.. ..+.+ .+.+|++++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~-~---~~~~~~~~~~~~~g~~-Vi~vSa~~g  182 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCE-D---AEEKIAEVEALAPGVP-VLAVSALDG  182 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCC-C---HHHHHHHHHHhCCCCc-EEEEECCCC
Confidence            4789999999999755555556666555444  3678899999999975 2   1112222222 23444 456899999


Q ss_pred             chhhhH
Q psy17235         99 QEVVEA  104 (170)
Q Consensus        99 ~~v~~~  104 (170)
                      .++++.
T Consensus       183 ~gl~~L  188 (356)
T PRK01889        183 EGLDVL  188 (356)
T ss_pred             ccHHHH
Confidence            998875

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.39  E-value=0.00073  Score=46.09  Aligned_cols=58  Identities=22%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             CeEEecCCccc----------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeC
Q psy17235          1 MQLWDTGGMER----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK   63 (170)
Q Consensus         1 l~iwDt~G~e~----------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK   63 (170)
                      +.++||||-..          +..... .+..+|++++|+|.+++.. +.....+..+.   .+.|+++|.||
T Consensus        49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   49 FILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             EEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             EEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            36899999532          112223 3478999999999887422 22223333332   57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.37  E-value=0.008  Score=48.22  Aligned_cols=92  Identities=18%  Similarity=0.128  Sum_probs=52.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH--H---
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE--A---   76 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~--~---   76 (170)
                      -|.||+|.-.   ........+|.++++-+   +.+-+.+......+    .+.|.++|.||+|+.. ......  .   
T Consensus       130 viidT~G~~~---~e~~i~~~aD~i~vv~~---~~~~~el~~~~~~l----~~~~~ivv~NK~Dl~~-~~~~~~~~~~~~  198 (300)
T TIGR00750       130 IIVETVGVGQ---SEVDIANMADTFVVVTI---PGTGDDLQGIKAGL----MEIADIYVVNKADGEG-ATNVTIARLMLA  198 (300)
T ss_pred             EEEeCCCCch---hhhHHHHhhceEEEEec---CCccHHHHHHHHHH----hhhccEEEEEcccccc-hhHHHHHHHHHH
Confidence            4789988431   11224566788887743   33444443333333    2577899999999875 211110  0   


Q ss_pred             -HHHHHHHh-cCC-CeEEEcccCCcchhhhH
Q psy17235         77 -DMENFWSR-RSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 -~~~~~a~~-~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                       ....+... .+. +.++.+||+++.|+++.
T Consensus       199 ~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L  229 (300)
T TIGR00750       199 LALEEIRRREDGWRPPVLTTSAVEGRGIDEL  229 (300)
T ss_pred             HHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence             00111111 121 34788999999999987

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.00049  Score=61.03  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ++|.|||||-.|..-....++-.||+++|+|...--..+.-.-|... .+  .++|.+++.||+|...
T Consensus        78 iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~--~~vp~i~fiNKmDR~~  142 (697)
T COG0480          78 INLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DK--YGVPRILFVNKMDRLG  142 (697)
T ss_pred             EEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hh--cCCCeEEEEECccccc
Confidence            47899999999999888899999999999999876555444455433 33  3799999999999765

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.30  E-value=0.0022  Score=48.54  Aligned_cols=75  Identities=9%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC-CCeEEEcccCCcch
Q psy17235         22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS-SRRFKPQEVVEPQE  100 (170)
Q Consensus        22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~  100 (170)
                      ..+..+.|+|+++......  .. ...    ...|.++++||+|+.+ .......+..+..+..+ ...++++||+++.|
T Consensus       123 ~~~~~i~Vvd~~~~d~~~~--~~-~~~----~~~a~iiv~NK~Dl~~-~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g  194 (207)
T TIGR00073       123 GEHMRVVLLSVTEGDDKPL--KY-PGM----FKEADLIVINKADLAE-AVGFDVEKMKADAKKINPEAEIILMSLKTGEG  194 (207)
T ss_pred             ccCeEEEEEecCcccchhh--hh-HhH----HhhCCEEEEEHHHccc-cchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            3555667888876543211  00 111    2467899999999975 33333444554444443 23578899999999


Q ss_pred             hhhH
Q psy17235        101 VVEA  104 (170)
Q Consensus       101 v~~~  104 (170)
                      +++.
T Consensus       195 v~~l  198 (207)
T TIGR00073       195 LDEW  198 (207)
T ss_pred             HHHH
Confidence            9976

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.26  E-value=0.0014  Score=52.30  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccC
Q psy17235         17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVV   96 (170)
Q Consensus        17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~   96 (170)
                      ...+..+|++++|+|..++.+.++  .++.+..   .+.|+++|.||+|+.+ ...  .+...++.++.+. .++.+||+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~-~~~--~~~~~~~~~~~~~-~vi~vSa~   89 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLAD-PEV--TKKWIEYFEEQGI-KALAINAK   89 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCC-HHH--HHHHHHHHHHcCC-eEEEEECC
Confidence            445789999999999988765433  2232222   3689999999999854 111  1111111223343 35567999


Q ss_pred             CcchhhhH
Q psy17235         97 EPQEVVEA  104 (170)
Q Consensus        97 ~~~~v~~~  104 (170)
                      ++.++.+.
T Consensus        90 ~~~gi~~L   97 (287)
T PRK09563         90 KGQGVKKI   97 (287)
T ss_pred             CcccHHHH
Confidence            99998764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.18  E-value=0.0036  Score=50.51  Aligned_cols=40  Identities=20%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             eEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         56 KIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        56 pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |.++|.||.|+.+      .++...+.+..   .++..||+.+-|+++.
T Consensus       241 p~l~v~NKiD~~~------~e~~~~l~~~~---~~v~isa~~~~nld~L  280 (365)
T COG1163         241 PALYVVNKIDLPG------LEELERLARKP---NSVPISAKKGINLDEL  280 (365)
T ss_pred             eeEEEEecccccC------HHHHHHHHhcc---ceEEEecccCCCHHHH
Confidence            7889999999754      45666666655   4556799999999874

>KOG1490|consensus

Probab=97.12  E-value=0.0036  Score=53.23  Aligned_cols=80  Identities=15%  Similarity=0.131  Sum_probs=57.5

Q ss_pred             cEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH--HHHHhcCCCeEEEcccCCcc
Q psy17235         24 EAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME--NFWSRRSSRRFKPQEVVEPQ   99 (170)
Q Consensus        24 d~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~--~~a~~~~~~~~~e~Sa~~~~   99 (170)
                      .+|+++-|++..  -|...--.++..|.....|-|+|+|.||+|+-. ...++++...  +...+-+...++++|+.+.+
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~-~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee  327 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR-PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE  327 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC-ccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence            568889998864  455554566777776668999999999999876 5566665433  22233333357789999999


Q ss_pred             hhhhH
Q psy17235        100 EVVEA  104 (170)
Q Consensus       100 ~v~~~  104 (170)
                      ||..+
T Consensus       328 gVm~V  332 (620)
T KOG1490|consen  328 GVMDV  332 (620)
T ss_pred             ceeeH
Confidence            99986

>KOG0458|consensus

Probab=97.09  E-value=0.002  Score=55.33  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFH---VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~---~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~   74 (170)
                      +.|.|+||+..|..-.-.-...||+.+||.|.+--   ..|+   .++. ...+.+...---++|+.||.|+.+ ..+-.
T Consensus       257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lgi~qlivaiNKmD~V~-Wsq~R  334 (603)
T KOG0458|consen  257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLGISQLIVAINKMDLVS-WSQDR  334 (603)
T ss_pred             EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcCcceEEEEeecccccC-ccHHH
Confidence            46899999999877666667889999999998752   2232   1111 222333334446788899999876 43333


Q ss_pred             HHHHH----HHH-HhcCC----CeEEEcccCCcchhhhH
Q psy17235         75 EADME----NFW-SRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~----~~a-~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.    -|. +..|+    -.|++||+.+|+|+...
T Consensus       335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            33322    233 44454    26999999999998754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.05  E-value=0.0011  Score=48.02  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=43.2

Q ss_pred             CeEEecCCcc----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235          1 MQLWDTGGME----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS   64 (170)
Q Consensus         1 l~iwDt~G~e----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~   64 (170)
                      +.|+||||-.    ....++..|+..+|++|+|.+.+...+-.....|.......  ...+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            4689999963    23467888999999999999999866655544555444433  33388888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.02  E-value=0.0088  Score=43.92  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|.|||+...  ......+..+|.++++...+ ..+...+..+++.+...  +.|+.+|.|++|...   . ...+..++
T Consensus        96 viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~---~-~~~~~~~~  166 (179)
T cd03110          96 IIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF--GIPVGVVINKYDLND---E-IAEEIEDY  166 (179)
T ss_pred             EEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCc---c-hHHHHHHH
Confidence            4789997642  22334568899999999877 45777777777766554  567889999999643   1 34567778


Q ss_pred             HHhcCCCeEE
Q psy17235         82 WSRRSSRRFK   91 (170)
Q Consensus        82 a~~~~~~~~~   91 (170)
                      .++.|.+.+-
T Consensus       167 ~~~~~~~vl~  176 (179)
T cd03110         167 CEEEGIPILG  176 (179)
T ss_pred             HHHcCCCeEE
Confidence            8888887543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd01882 BMS1 Bms1

Probab=96.91  E-value=0.011  Score=45.34  Aligned_cols=98  Identities=8%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCC--HHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVT--EAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~--~~~   77 (170)
                      +.++||||.-  ..+.. ..+.+|++++|+|.+........ ..+..+..  .+.|. ++|.||.|+.++.....  ..+
T Consensus        85 i~~vDtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~  158 (225)
T cd01882          85 LTFIECPNDI--NAMID-IAKVADLVLLLIDASFGFEMETF-EFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKR  158 (225)
T ss_pred             EEEEeCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHH
Confidence            3578999853  23332 35789999999999865443221 22233322  24664 55999999864111111  112


Q ss_pred             HHH-HHHh-cCCCeEEEcccCCcchhhhH
Q psy17235         78 MEN-FWSR-RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~-~a~~-~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+. +..+ .....++..||+++-.+...
T Consensus       159 l~~~~~~~~~~~~ki~~iSa~~~~~~~~~  187 (225)
T cd01882         159 LKHRFWTEVYQGAKLFYLSGIVHGRYPKT  187 (225)
T ss_pred             HHHHHHHhhCCCCcEEEEeeccCCCCCHH
Confidence            222 3222 23345777899988665543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.0044  Score=51.78  Aligned_cols=97  Identities=14%  Similarity=0.082  Sum_probs=63.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.|.|+||++++-+..-.-....|..++|+|.+   .+++.+.+.     +.....-.-.++|.||+|..+ ...+. +.
T Consensus        52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdllgi~~giivltk~D~~d-~~r~e-~~  124 (447)
T COG3276          52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLLGIKNGIIVLTKADRVD-EARIE-QK  124 (447)
T ss_pred             eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhcCCCceEEEEecccccc-HHHHH-HH
Confidence            358999999998776666677899999999995   456665542     122222334588999999876 22111 11


Q ss_pred             HHHHHHh--cCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSR--RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~--~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+....  +....++.+|+++|+||++.
T Consensus       125 i~~Il~~l~l~~~~i~~~s~~~g~GI~~L  153 (447)
T COG3276         125 IKQILADLSLANAKIFKTSAKTGRGIEEL  153 (447)
T ss_pred             HHHHHhhcccccccccccccccCCCHHHH
Confidence            2222222  22334678999999999975

>KOG0099|consensus

Probab=96.73  E-value=0.0026  Score=50.04  Aligned_cols=67  Identities=18%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~   67 (170)
                      |+++|.+||..-+.-|-..+.+..++|+|...++-          ..++....++..+=+..  ..+.+||..||.|+-
T Consensus       204 FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll  282 (379)
T KOG0099|consen  204 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  282 (379)
T ss_pred             eeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence            57899999998889999999999999999887641          12222222222222222  468899999999984

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.68  E-value=0.016  Score=46.50  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=57.3

Q ss_pred             chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235         15 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ   93 (170)
Q Consensus        15 ~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~   93 (170)
                      +.+.-..+.|-.+++++..+|+ |...+.+++-....  .++..||+.||+|+.+ ......++......+.|.+.+ .+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~-~~~~~~~~~~~~y~~~gy~v~-~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLD-DEEAAVKELLREYEDIGYPVL-FV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCc-chHHHHHHHHHHHHhCCeeEE-Ee
Confidence            3333444577788888888875 66666666543322  4777788899999987 222222455666777888655 57


Q ss_pred             ccCCcchhhhH
Q psy17235         94 EVVEPQEVVEA  104 (170)
Q Consensus        94 Sa~~~~~v~~~  104 (170)
                      |++++.++.+.
T Consensus       148 s~~~~~~~~~l  158 (301)
T COG1162         148 SAKNGDGLEEL  158 (301)
T ss_pred             cCcCcccHHHH
Confidence            99999888876

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.0026  Score=50.80  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=57.3

Q ss_pred             EEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCC--CCCHH
Q psy17235          3 LWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTP--QVTEA   76 (170)
Q Consensus         3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~--~v~~~   76 (170)
                      ..|+||+..|....-.--.+.||.|||++.+|   |++-+++.  +  .++  -.+| ++++.||+|+.++..  ..-..
T Consensus        79 hVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--l--arq--vGvp~ivvflnK~Dmvdd~ellelVem  152 (394)
T COG0050          79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--L--ARQ--VGVPYIVVFLNKVDMVDDEELLELVEM  152 (394)
T ss_pred             eccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--h--hhh--cCCcEEEEEEecccccCcHHHHHHHHH
Confidence            47999999886644444567899999999998   45555431  1  112  2454 567799999987311  12335


Q ss_pred             HHHHHHHhcCCC----eEEEcccC
Q psy17235         77 DMENFWSRRSSR----RFKPQEVV   96 (170)
Q Consensus        77 ~~~~~a~~~~~~----~~~e~Sa~   96 (170)
                      +.+++...++++    .....||.
T Consensus       153 EvreLLs~y~f~gd~~Pii~gSal  176 (394)
T COG0050         153 EVRELLSEYGFPGDDTPIIRGSAL  176 (394)
T ss_pred             HHHHHHHHcCCCCCCcceeechhh
Confidence            677888888875    34444543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.65  E-value=0.012  Score=48.76  Aligned_cols=100  Identities=15%  Similarity=0.041  Sum_probs=63.2

Q ss_pred             eEEecCCcccccc--chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-------
Q psy17235          2 QLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-------   72 (170)
Q Consensus         2 ~iwDt~G~e~~~~--~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-------   72 (170)
                      .+.||.|+|.|-.  ++...-...|..+++...+|--+--. +..+--...  -..|++++.+|+|+..+.+.       
T Consensus       204 sfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei  280 (527)
T COG5258         204 SFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA--MELPVIVVVTKIDMVPDDRFQGVVEEI  280 (527)
T ss_pred             EEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh--hcCCEEEEEEecccCcHHHHHHHHHHH
Confidence            5899999999843  56666678999999999887544321 222222111  37999999999999764111       


Q ss_pred             -------------C-CHHHHHH--HH-Hhc-CCCeEEEcccCCcchhhhH
Q psy17235         73 -------------V-TEADMEN--FW-SRR-SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 -------------v-~~~~~~~--~a-~~~-~~~~~~e~Sa~~~~~v~~~  104 (170)
                                   | +..+...  .+ +.. +.-..+.+|+.+|++.+-.
T Consensus       281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL  330 (527)
T COG5258         281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence                         1 1112211  11 111 2345778899999998854

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0056  Score=51.33  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.|.|||||+.|..-.-..+.-+|..+.|.|...-   ++.    ++++ +-+. .++|++-..||.|... .  -+.+-
T Consensus        83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~----KLfe-Vcrl-R~iPI~TFiNKlDR~~-r--dP~EL  153 (528)
T COG4108          83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL----KLFE-VCRL-RDIPIFTFINKLDREG-R--DPLEL  153 (528)
T ss_pred             EeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH----HHHH-HHhh-cCCceEEEeecccccc-C--ChHHH
Confidence            46899999999977666667789999999998753   332    2221 2121 5899999999999876 2  23344


Q ss_pred             HHHHHHhcCCCe----EEEcccCCcchhh
Q psy17235         78 MENFWSRRSSRR----FKPQEVVEPQEVV  102 (170)
Q Consensus        78 ~~~~a~~~~~~~----~~e~Sa~~~~~v~  102 (170)
                      ..++-+.+++..    |..-..++-.||.
T Consensus       154 LdEiE~~L~i~~~PitWPIG~gk~F~Gvy  182 (528)
T COG4108         154 LDEIEEELGIQCAPITWPIGMGKDFKGVY  182 (528)
T ss_pred             HHHHHHHhCcceecccccccCCcccceee
Confidence            455555555522    2223455555544

>KOG3905|consensus

Probab=96.52  E-value=0.032  Score=45.37  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=66.4

Q ss_pred             eEEecCCccccccchhhhccCC----cEEEEEEeCCChh-hHHHHHHHHHHHHhhC------------------------
Q psy17235          2 QLWDTGGMERVASITSSYYKFA----EAAILVFSLDNAA-SFHVLSQHLLEIVTYA------------------------   52 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~a----d~iilv~D~t~~~-Sf~~~~~~~~~i~~~~------------------------   52 (170)
                      .+|=.-|......+.+..+...    -.+|++.|+++|. -+++++.|..-+.++.                        
T Consensus       103 ~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeY  182 (473)
T KOG3905|consen  103 NVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEY  182 (473)
T ss_pred             ceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence            3566666544444444443322    4688999999995 4678888865433221                        


Q ss_pred             --------------------------------------CCCeEEEEeeCCCCCCC---CCCCC-------HHHHHHHHHh
Q psy17235         53 --------------------------------------ENAKIFLCGNKSDLEGT---TPQVT-------EADMENFWSR   84 (170)
Q Consensus        53 --------------------------------------~~~pvvlvgnK~Dl~~~---~~~v~-------~~~~~~~a~~   84 (170)
                                                            -.+|++||.+|||...-   .....       ...++.||-.
T Consensus       183 vep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr  262 (473)
T KOG3905|consen  183 VEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR  262 (473)
T ss_pred             cCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence                                                  02379999999998320   11111       2347889999


Q ss_pred             cCCCeEEEcccCCcchhhhH
Q psy17235         85 RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        85 ~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +|...++ +|+|..+|++-.
T Consensus       263 ~GaaLiy-TSvKE~KNidll  281 (473)
T KOG3905|consen  263 YGAALIY-TSVKETKNIDLL  281 (473)
T ss_pred             cCceeEE-eecccccchHHH
Confidence            9997655 799999999965

>smart00053 DYNc Dynamin, GTPase

Probab=96.40  E-value=0.012  Score=45.84  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             CeEEecCCccc-------------cccchhhhccC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMER-------------VASITSSYYKF-AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~-------------~~~~~~~~~~~-ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      |.+.||||-..             ...+...|+++ .+.+++|.|.+..-+=.........+..  ...|+++|.||+|.
T Consensus       127 ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~  204 (240)
T smart00053      127 LTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDL  204 (240)
T ss_pred             eEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCC
Confidence            57899999642             22366778884 4588999987542221121222222222  36899999999998


Q ss_pred             CC
Q psy17235         67 EG   68 (170)
Q Consensus        67 ~~   68 (170)
                      .+
T Consensus       205 ~~  206 (240)
T smart00053      205 MD  206 (240)
T ss_pred             CC
Confidence            65

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.40  E-value=0.07  Score=39.77  Aligned_cols=85  Identities=14%  Similarity=0.071  Sum_probs=46.2

Q ss_pred             CeEEecCCccccc--------cc---hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERVA--------SI---TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~~--------~~---~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl   66 (170)
                      +.++||||-....        .+   ......++|++++|.+..+ .+-+. ...+..+.+..   .-.++++|.|+.|.
T Consensus        51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~  128 (196)
T cd01852          51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD  128 (196)
T ss_pred             EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc
Confidence            4689999954321        11   1223468999999999887 22211 12233333322   12477888899985


Q ss_pred             CCCCCCC------CHHHHHHHHHhcCCC
Q psy17235         67 EGTTPQV------TEADMENFWSRRSSR   88 (170)
Q Consensus        67 ~~~~~~v------~~~~~~~~a~~~~~~   88 (170)
                      .. ...+      .....+.+.+..+..
T Consensus       129 l~-~~~~~~~~~~~~~~l~~l~~~c~~r  155 (196)
T cd01852         129 LE-GGTLEDYLENSCEALKRLLEKCGGR  155 (196)
T ss_pred             cC-CCcHHHHHHhccHHHHHHHHHhCCe
Confidence            44 1111      124455555655543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.29  E-value=0.008  Score=48.64  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             CeEEecCCccccccchhhhccC---CcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-
Q psy17235          1 MQLWDTGGMERVASITSSYYKF---AEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-   72 (170)
                      +.|.|.||||-...   .-+.+   -||.+||.+.+.    |++-+++..    +.- ..---+|++-||.|+...++. 
T Consensus        88 VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A----leI-igik~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          88 VSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMA----LEI-IGIKNIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             EEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHH----Hhh-hccceEEEEecccceecHHHHH
Confidence            35899999986533   33444   499999999886    355554322    111 123457889999999762222 


Q ss_pred             CCHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      -+.+++.+|.+---+  ...+..||..+.|++..
T Consensus       160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal  193 (415)
T COG5257         160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDAL  193 (415)
T ss_pred             HHHHHHHHHhcccccCCCceeeehhhhccCHHHH
Confidence            234566677665432  24778999999999965

>KOG1954|consensus

Probab=96.05  E-value=0.15  Score=42.24  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=42.0

Q ss_pred             CeEEecCCcc-----------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGME-----------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e-----------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.|.||||--           .|.....=+...+|.+|++||....+--......+..++.+..  .+=||.||.|..+
T Consensus       149 vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed--kiRVVLNKADqVd  225 (532)
T KOG1954|consen  149 VTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED--KIRVVLNKADQVD  225 (532)
T ss_pred             eeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc--eeEEEeccccccC
Confidence            4689999921           1344455566789999999998765433333444555554433  3445679999655

>KOG3887|consensus

Probab=95.86  E-value=0.16  Score=39.83  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=45.6

Q ss_pred             CeEEecCCcccccc---chhhhccCCcEEEEEEeCCChhhHHHHHHH---HHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS---ITSSYYKFAEAAILVFSLDNAASFHVLSQH---LLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~---~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~---~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      |++||.|||-.|-.   -....++++-+.|+|.|..+. -.+.+.++   .......+|++.+=+..+|.|-..
T Consensus        77 f~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLs  149 (347)
T KOG3887|consen   77 FQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS  149 (347)
T ss_pred             eEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence            58999999976522   235668899999999998763 23333333   233333338888889999999644

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=95.83  E-value=0.033  Score=47.52  Aligned_cols=103  Identities=14%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             CeEEecCCccccccchhhhccC----CcEEEEEEeCCChhhH-HHHHHHHHHHHhh------------------------
Q psy17235          1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLDNAASF-HVLSQHLLEIVTY------------------------   51 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~------------------------   51 (170)
                      +.+|-..|...+..+.+..+..    --.+|+|.|++.|.++ +.+..|+.-+..+                        
T Consensus        75 l~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~  154 (472)
T PF05783_consen   75 LNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQE  154 (472)
T ss_pred             eeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            3688888876666666554442    3578999999999765 4666665322111                        


Q ss_pred             -C-----C---------------------------------CCeEEEEeeCCCCCCC---CCCC-------CHHHHHHHH
Q psy17235         52 -A-----E---------------------------------NAKIFLCGNKSDLEGT---TPQV-------TEADMENFW   82 (170)
Q Consensus        52 -~-----~---------------------------------~~pvvlvgnK~Dl~~~---~~~v-------~~~~~~~~a   82 (170)
                       .     .                                 .+|++||.+|+|....   ....       -..-.+.+|
T Consensus       155 Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c  234 (472)
T PF05783_consen  155 YVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC  234 (472)
T ss_pred             hhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence             0     0                                 2599999999996321   1111       112377888


Q ss_pred             HhcCCCeEEEcccCCcchhhhH
Q psy17235         83 SRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        83 ~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      -.+|+..++ ||++.+.|++..
T Consensus       235 L~yGAsL~y-ts~~~~~n~~~L  255 (472)
T PF05783_consen  235 LKYGASLIY-TSVKEEKNLDLL  255 (472)
T ss_pred             HhcCCeEEE-eeccccccHHHH
Confidence            889997665 688999888764

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=95.54  E-value=0.061  Score=43.47  Aligned_cols=67  Identities=16%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             CeEEecCCccccccch-------hhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASIT-------SSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~-------~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      +.||||||......+.       ..++  .+.|++++|..++.......-...+..+....   --.++||+.|+.|..
T Consensus        88 l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991        88 LNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             EEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            4799999976432211       1122  26999999966543211111123334443332   124689999999965

>COG3596 Predicted GTPase [General function prediction only]

Probab=95.51  E-value=0.021  Score=45.23  Aligned_cols=67  Identities=15%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||-+.       |+.....++...|.++++.+..|+.=--+. .++.++....-+.|++++.|.+|...
T Consensus        89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~  162 (296)
T COG3596          89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAE  162 (296)
T ss_pred             eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhc
Confidence            46999999654       667777888899999999999886422221 34455544444689999999999754

>KOG1191|consensus

Probab=95.37  E-value=0.038  Score=46.98  Aligned_cols=103  Identities=19%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             CeEEecCCccc-------ccc--chhhhccCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhC-------CCCeEEEEee
Q psy17235          1 MQLWDTGGMER-------VAS--ITSSYYKFAEAAILVFSL--DNAASFHVLSQHLLEIVTYA-------ENAKIFLCGN   62 (170)
Q Consensus         1 l~iwDt~G~e~-------~~~--~~~~~~~~ad~iilv~D~--t~~~Sf~~~~~~~~~i~~~~-------~~~pvvlvgn   62 (170)
                      +.+.||+|-.+       -.+  ....-+..||.+++|+|.  ++-++-..+.+.+.....-.       ..-|++++.|
T Consensus       318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n  397 (531)
T KOG1191|consen  318 VRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN  397 (531)
T ss_pred             EEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence            35789999544       011  123346789999999998  55444444334444332222       2478999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHhc---CCCeEEEcccCCcchhhhH
Q psy17235         63 KSDLEGTTPQVTEADMENFWSRR---SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        63 K~Dl~~~~~~v~~~~~~~~a~~~---~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |.|+..+.++.+..-.. +-...   ..+...++|+++++++...
T Consensus       398 k~D~~s~~~~~~~~~~~-~~~~~~~~~~~i~~~vs~~tkeg~~~L  441 (531)
T KOG1191|consen  398 KSDLVSKIPEMTKIPVV-YPSAEGRSVFPIVVEVSCTTKEGCERL  441 (531)
T ss_pred             hhhccCccccccCCcee-ccccccCcccceEEEeeechhhhHHHH
Confidence            99997632232221111 11111   2234555899999998864

>KOG0460|consensus

Probab=95.28  E-value=0.044  Score=44.84  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             EecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC--CCCCHHHH
Q psy17235          4 WDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT--PQVTEADM   78 (170)
Q Consensus         4 wDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--~~v~~~~~   78 (170)
                      .|+||+..|....-.--..-||.|+|+..+|-   ++=+++    -..++. .=.-+|+..||.|+.++.  ...-+-|+
T Consensus       122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQV-GV~~ivvfiNKvD~V~d~e~leLVEmE~  196 (449)
T KOG0460|consen  122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQV-GVKHIVVFINKVDLVDDPEMLELVEMEI  196 (449)
T ss_pred             CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHc-CCceEEEEEecccccCCHHHHHHHHHHH
Confidence            58999988865444445567999999999994   443332    111222 122366778999998532  22334567


Q ss_pred             HHHHHhcCCC
Q psy17235         79 ENFWSRRSSR   88 (170)
Q Consensus        79 ~~~a~~~~~~   88 (170)
                      +++..++|++
T Consensus       197 RElLse~gf~  206 (449)
T KOG0460|consen  197 RELLSEFGFD  206 (449)
T ss_pred             HHHHHHcCCC
Confidence            8888888873

>COG1161 Predicted GTPases [General function prediction only]

Probab=95.23  E-value=0.05  Score=44.18  Aligned_cols=89  Identities=15%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             CCc-cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc
Q psy17235          7 GGM-ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR   85 (170)
Q Consensus         7 ~G~-e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~   85 (170)
                      +|+ ..+.......+...|+++-|.|..+|.+..+     ..+.+...+.|.++|+||+|+..  +.+.....+.+.+..
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~--~~~~~~W~~~~~~~~   90 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAP--KEVTKKWKKYFKKEE   90 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCC--HHHHHHHHHHHHhcC
Confidence            443 3344455667889999999999999987643     33444444566699999999975  344445555555555


Q ss_pred             CCCeEEEcccCCcchhhh
Q psy17235         86 SSRRFKPQEVVEPQEVVE  103 (170)
Q Consensus        86 ~~~~~~e~Sa~~~~~v~~  103 (170)
                      +...+ ..+++.+.++..
T Consensus        91 ~~~~~-~v~~~~~~~~~~  107 (322)
T COG1161          91 GIKPI-FVSAKSRQGGKK  107 (322)
T ss_pred             CCccE-EEEeecccCccc
Confidence            44323 246666655553

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=95.17  E-value=0.31  Score=41.19  Aligned_cols=65  Identities=11%  Similarity=0.041  Sum_probs=42.4

Q ss_pred             hcc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235         19 YYK-FAEAAILVF-SLD----NAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR   88 (170)
Q Consensus        19 ~~~-~ad~iilv~-D~t----~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~   88 (170)
                      .+. .++..|+|. |-+    .++.+... ..|+.++...  +.|+++|.||+|...   .-+.+...++...++.+
T Consensus       140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~---~et~~l~~~l~eky~vp  211 (492)
T TIGR02836       140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYH---PETEALRQELEEKYDVP  211 (492)
T ss_pred             HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCC---chhHHHHHHHHHHhCCc
Confidence            344 789999888 653    12333333 4777777765  799999999999533   12444455666777876

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1143|consensus

Probab=95.14  E-value=0.11  Score=43.05  Aligned_cols=101  Identities=19%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             CeEEecCCccccccchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT---------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------   69 (170)
                      +.+.|.+|+.+|....-+-+.  ..|...+|++...--.. ..+..+.-+..  -++|+.++.+|+|+.+.         
T Consensus       251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~tv~~  327 (591)
T KOG1143|consen  251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKTVKD  327 (591)
T ss_pred             EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH--hCCCeEEEEEeeccccchhHHHHHHH
Confidence            468999999998664333333  36778888876543221 12233333333  28999999999999763         


Q ss_pred             --------------CCCCCHHHHHHHHHhc---CCCeEEEcccCCcchhhhH
Q psy17235         70 --------------TPQVTEADMENFWSRR---SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 --------------~~~v~~~~~~~~a~~~---~~~~~~e~Sa~~~~~v~~~  104 (170)
                                    .+.-+.+++...+++.   ++...+..|..+|++..-.
T Consensus       328 l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  328 LSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                          1223445555555554   4445667788999887743

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=95.06  E-value=0.049  Score=40.18  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=28.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235         24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus        24 d~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      |++++|.|..++.+-.+ ..+.+.+.-...+.|+++|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence            78999999988754322 122222211114689999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0467|consensus

Probab=94.72  E-value=0.046  Score=48.71  Aligned_cols=58  Identities=26%  Similarity=0.356  Sum_probs=46.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLS-QHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +.+.|+|||-.|.+......+-+||+++.+|+..   .++..-++ .|.       ....++||.||+|
T Consensus        74 ~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkid  135 (887)
T KOG0467|consen   74 INLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKID  135 (887)
T ss_pred             EEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-------ccCceEEEEehhh
Confidence            3689999999999999889999999999999875   34544443 243       3566789999999

>KOG0465|consensus

Probab=94.65  E-value=0.058  Score=47.06  Aligned_cols=65  Identities=18%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.|.|||||-.|.--....++--||.++|+|....---+...-|. +..++  ++|.|...||.|.-+
T Consensus       106 iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  106 INIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINKMDRMG  170 (721)
T ss_pred             eEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEehhhhcC
Confidence            468999999998777777888899999999876543323333453 34555  799999999999754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=94.34  E-value=0.37  Score=45.75  Aligned_cols=66  Identities=21%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             EEecCCcc--------ccccchhhhcc---------CCcEEEEEEeCCChhh---------HHHHHHHHHHHHhhC-CCC
Q psy17235          3 LWDTGGME--------RVASITSSYYK---------FAEAAILVFSLDNAAS---------FHVLSQHLLEIVTYA-ENA   55 (170)
Q Consensus         3 iwDt~G~e--------~~~~~~~~~~~---------~ad~iilv~D~t~~~S---------f~~~~~~~~~i~~~~-~~~   55 (170)
                      ++||+|.-        .....|..++.         ..+|+|+++|+.+.-+         -..++..+.++.+.. -.+
T Consensus       165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~  244 (1169)
T TIGR03348       165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF  244 (1169)
T ss_pred             EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            68999932        22233444433         4899999999875321         134455666666555 689


Q ss_pred             eEEEEeeCCCCCC
Q psy17235         56 KIFLCGNKSDLEG   68 (170)
Q Consensus        56 pvvlvgnK~Dl~~   68 (170)
                      ||.||.+|+|+..
T Consensus       245 PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       245 PVYLVLTKADLLA  257 (1169)
T ss_pred             CEEEEEecchhhc
Confidence            9999999999863

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=94.11  E-value=0.19  Score=35.45  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=43.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      -|+|+|+..  .......+..+|.++++.+.+ +.++..+...++.+.+.....++.+|.|+.+..
T Consensus        48 VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          48 IIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             EEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            478998753  333456788999999998865 566666555555555444556778899999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=93.82  E-value=1.8  Score=36.08  Aligned_cols=96  Identities=15%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             CeEEecCCccccccchhh-----hccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCeEEEEeeCCCC--CC----
Q psy17235          1 MQLWDTGGMERVASITSS-----YYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNKSDL--EG----   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~-----~~~~ad~iilv~D~t~~~Sf~~~~~~~-~~i~~~~~~~pvvlvgnK~Dl--~~----   68 (170)
                      +.+||.||-..-......     -+..-|.||++.+    ..|....-|+ ..+.+.  +.|+.+|-+|+|.  .+    
T Consensus        88 v~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~  161 (376)
T PF05049_consen   88 VTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRR  161 (376)
T ss_dssp             EEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhcc
Confidence            469999995432222233     3556899888875    3343333333 444444  7899999999995  11    


Q ss_pred             CCCCCCHH----HHHHHHHh----cC--CCeEEEcccCCcchhh
Q psy17235         69 TTPQVTEA----DMENFWSR----RS--SRRFKPQEVVEPQEVV  102 (170)
Q Consensus        69 ~~~~v~~~----~~~~~a~~----~~--~~~~~e~Sa~~~~~v~  102 (170)
                      ..+..+.+    ++++.+.+    .|  .|..+.+|..+...-+
T Consensus       162 ~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yD  205 (376)
T PF05049_consen  162 KPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYD  205 (376)
T ss_dssp             -STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTT
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCC
Confidence            02223332    23333322    23  3567777887765544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=93.57  E-value=1  Score=35.69  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|.|+|-.-.  ...-..+.++|.+|+|--.| +..+.+++..++-+...  ++|..+|.||.++..     +  +.+++
T Consensus       167 ~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f--~ip~~iViNr~~~g~-----s--~ie~~  234 (284)
T COG1149         167 LIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF--GIPTGIVINRYNLGD-----S--EIEEY  234 (284)
T ss_pred             eEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh--CCceEEEEecCCCCc-----h--HHHHH
Confidence            3677763321  12334578999999996655 46667776666555554  799999999996543     3  88899


Q ss_pred             HHhcCCCeEEE
Q psy17235         82 WSRRSSRRFKP   92 (170)
Q Consensus        82 a~~~~~~~~~e   92 (170)
                      +.+.|++...+
T Consensus       235 ~~e~gi~il~~  245 (284)
T COG1149         235 CEEEGIPILGE  245 (284)
T ss_pred             HHHcCCCeeEE
Confidence            99999987654

>KOG0461|consensus

Probab=93.52  E-value=0.37  Score=39.73  Aligned_cols=89  Identities=15%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             CeEEecCCccccccchhhhccC---CcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC-CCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKF---AEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG-TTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~-~~~~v   73 (170)
                      +.+.|+||+.   ++.+..+-+   .|..++|.|++.-   ++-+.+  .+.++.    -...|+|.||.|... ..|.-
T Consensus        72 ~tlvDCPGHa---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~----c~klvvvinkid~lpE~qr~s  142 (522)
T KOG0461|consen   72 FTLVDCPGHA---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL----CKKLVVVINKIDVLPENQRAS  142 (522)
T ss_pred             eEEEeCCCcH---HHHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh----ccceEEEEeccccccchhhhh
Confidence            4689999995   445555555   4778999999864   343332  122222    123566778887543 12222


Q ss_pred             CHH-HHHHHHHhc------CCCeEEEcccCCc
Q psy17235         74 TEA-DMENFWSRR------SSRRFKPQEVVEP   98 (170)
Q Consensus        74 ~~~-~~~~~a~~~------~~~~~~e~Sa~~~   98 (170)
                      .-+ ...++++.+      |-....+.||+.|
T Consensus       143 ki~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G  174 (522)
T KOG0461|consen  143 KIEKSAKKVRKTLESTGFDGNSPIVEVSAADG  174 (522)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence            212 223333332      2235788999999

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=93.25  E-value=1.1  Score=34.36  Aligned_cols=60  Identities=22%  Similarity=0.382  Sum_probs=50.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q psy17235        101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILK  160 (170)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  160 (170)
                      |.++..-...+...|..++...+.++..|...|+..|+.++..-++.+....+..+....
T Consensus       158 v~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We  217 (224)
T cd07623         158 IKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWE  217 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444556778899999999999999999999999999999999999998887766543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=93.06  E-value=0.65  Score=34.36  Aligned_cols=69  Identities=12%  Similarity=0.096  Sum_probs=51.1

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235         22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK   91 (170)
Q Consensus        22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~   91 (170)
                      ..|.|+|++|+++..|+..++.-+..+....--=.+.++++-....+ ...|..++..+++..+++|..+
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~-~~sv~~~~V~kla~~y~~plL~  132 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRES-HCSVHPNEVRKLAATYNSPLLF  132 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCccc-ccccCHHHHHHHHHHhCCCEEE
Confidence            57999999999999999998877666543331112344555555544 5789999999999999998543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=92.42  E-value=0.41  Score=37.47  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=37.2

Q ss_pred             CeEEecCCcccccc----------chhhhcc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCC---CCeEEEEeeCC
Q psy17235          1 MQLWDTGGMERVAS----------ITSSYYK--FAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAE---NAKIFLCGNKS   64 (170)
Q Consensus         1 l~iwDt~G~e~~~~----------~~~~~~~--~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~---~~pvvlvgnK~   64 (170)
                      +.+|||||-.....          ....|+.  ..|++++|..++.. .++.. ...+..+....+   -.++++|.|++
T Consensus        81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~  159 (249)
T cd01853          81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHA  159 (249)
T ss_pred             EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCC
Confidence            46899999654310          0122333  57888888766543 22321 233333433221   24689999999


Q ss_pred             CCC
Q psy17235         65 DLE   67 (170)
Q Consensus        65 Dl~   67 (170)
                      |..
T Consensus       160 d~~  162 (249)
T cd01853         160 ASS  162 (249)
T ss_pred             ccC
Confidence            974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG4273|consensus

Probab=92.30  E-value=0.17  Score=39.88  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235         23 AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus        23 ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ..+++.|||++....+..++.|++...-..-++ ++.+|||.|...
T Consensus        79 l~a~vmvfdlse~s~l~alqdwl~htdinsfdi-llcignkvdrvp  123 (418)
T KOG4273|consen   79 LQAFVMVFDLSEKSGLDALQDWLPHTDINSFDI-LLCIGNKVDRVP  123 (418)
T ss_pred             eeeEEEEEeccchhhhHHHHhhccccccccchh-heeccccccccc
Confidence            468999999999999999999987533221122 456799999754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=92.21  E-value=0.27  Score=37.09  Aligned_cols=47  Identities=15%  Similarity=-0.054  Sum_probs=35.2

Q ss_pred             EEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         57 IFLCGNKSDLEGTTPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        57 vvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      =++|.||.|+.. .-..+.+...+-+++.+. ..|+.+|+++|+|+++.
T Consensus       145 DllVInK~DLa~-~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~  192 (202)
T COG0378         145 DLLVINKTDLAP-YVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW  192 (202)
T ss_pred             eEEEEehHHhHH-HhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence            368899999976 444555666666666643 35778999999999976

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=91.90  E-value=1.4  Score=34.77  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH---HHHHhc---CCCeEEEcc
Q psy17235         21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME---NFWSRR---SSRRFKPQE   94 (170)
Q Consensus        21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~---~~a~~~---~~~~~~e~S   94 (170)
                      .-+|.+++|.-..--+..+.++.=+=+       ++=++|.||+|.+..  .-...+.+   .+....   .-|..+.+|
T Consensus       141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~ts  211 (266)
T PF03308_consen  141 DMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTS  211 (266)
T ss_dssp             TTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred             HhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHH--HHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence            457888888776555554433321111       234678899996541  11111222   222211   126788999


Q ss_pred             cCCcchhhhH
Q psy17235         95 VVEPQEVVEA  104 (170)
Q Consensus        95 a~~~~~v~~~  104 (170)
                      |.++.||++.
T Consensus       212 A~~~~Gi~eL  221 (266)
T PF03308_consen  212 ALEGEGIDEL  221 (266)
T ss_dssp             TTTTBSHHHH
T ss_pred             eCCCCCHHHH
Confidence            9999999986

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=91.88  E-value=2.1  Score=30.75  Aligned_cols=81  Identities=11%  Similarity=-0.107  Sum_probs=50.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|+||||....  .....+..+|.+|++.+.+ ..++..+..+++.+... ...+..+|.|+.+...   ....+....+
T Consensus        66 viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~---~~~~~~~~~~  138 (179)
T cd02036          66 ILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM---VEGGDMVEDI  138 (179)
T ss_pred             EEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc---cchhhHHHHH
Confidence            47899876433  2344568899999998765 45666666666655543 2234668899998643   2233334455


Q ss_pred             HHhcCCCe
Q psy17235         82 WSRRSSRR   89 (170)
Q Consensus        82 a~~~~~~~   89 (170)
                      .+.++.+.
T Consensus       139 ~~~~~~~v  146 (179)
T cd02036         139 EEILGVPL  146 (179)
T ss_pred             HHHhCCCE
Confidence            56667654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0085|consensus

Probab=91.69  E-value=0.031  Score=43.47  Aligned_cols=68  Identities=22%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |.+.|.+||..-+.-|-+.+.+.-.++++..++          +....+.-...+.-|..+.  .+.++|+..||.|+.+
T Consensus       201 frmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLE  280 (359)
T KOG0085|consen  201 FRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  280 (359)
T ss_pred             eeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhh
Confidence            468999999888888989999887777765543          2334444445555565555  7899999999999865

>KOG0459|consensus

Probab=91.65  E-value=0.19  Score=41.97  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHH--HHHHHhhCCCCeEEEEeeCCCCCCCCCCC--
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQH--LLEIVTYAENAKIFLCGNKSDLEGTTPQV--   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~--~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--   73 (170)
                      +.|.|+||+..|....-.-..+||.-++|.+...-   .-|+.=.+-  ...+.....---.|++.||+|-+......  
T Consensus       159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR  238 (501)
T KOG0459|consen  159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER  238 (501)
T ss_pred             EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence            46899999988855433345678888888876321   122211111  11122222334578889999976521111  


Q ss_pred             ---CHHHHHHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235         74 ---TEADMENFWSRRSS-----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ---~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~~  104 (170)
                         ..+....|.+..|.     ..|+.+|..+|.++.+-
T Consensus       239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~  277 (501)
T KOG0459|consen  239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDR  277 (501)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhc
Confidence               11234445554443     47999999999998853

>PHA02518 ParA-like protein; Provisional

Probab=91.57  E-value=1.4  Score=32.69  Aligned_cols=80  Identities=4%  Similarity=-0.008  Sum_probs=46.8

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH---HHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL---SQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~---~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~~~~   77 (170)
                      -|+||||..  ..+....+..+|.+|++...+ +.++..+   ..++..+....+..|. .++.|+.+...   .. ..+
T Consensus        80 viiD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~---~~-~~~  152 (211)
T PHA02518         80 VVVDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNT---QL-YRE  152 (211)
T ss_pred             EEEeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcc---hH-HHH
Confidence            589999863  445666788999999998765 3344433   3444443333344544 46678765432   22 234


Q ss_pred             HHHHHHhcCCC
Q psy17235         78 MENFWSRRSSR   88 (170)
Q Consensus        78 ~~~~a~~~~~~   88 (170)
                      ..+..+..+.+
T Consensus       153 ~~~~l~~~~~~  163 (211)
T PHA02518        153 ARKALAGYGLP  163 (211)
T ss_pred             HHHHHHHcCch
Confidence            55555555554

>KOG0469|consensus

Probab=91.51  E-value=0.29  Score=42.22  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHH-H
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADM-E   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~-~   79 (170)
                      +.+.|.||+-.|.+-....++-.||.++|+|..+---.+.---+.+.+.   ..+.-+|+.||.|..--+-+++.++. +
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~---ERIkPvlv~NK~DRAlLELq~~~EeLyq  176 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---ERIKPVLVMNKMDRALLELQLSQEELYQ  176 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH---hhccceEEeehhhHHHHhhcCCHHHHHH
Confidence            4689999999999988889999999999999876422211001111222   24555778999995321346676663 3


Q ss_pred             HHHHh
Q psy17235         80 NFWSR   84 (170)
Q Consensus        80 ~~a~~   84 (170)
                      .|++.
T Consensus       177 tf~R~  181 (842)
T KOG0469|consen  177 TFQRI  181 (842)
T ss_pred             HHHHH
Confidence            44443

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=91.40  E-value=1.1  Score=35.49  Aligned_cols=47  Identities=23%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             CCcEEEEEEeCCChh-------hHHH----HHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235         22 FAEAAILVFSLDNAA-------SFHV----LSQHLLEIVTYA-ENAKIFLCGNKSDLEG   68 (170)
Q Consensus        22 ~ad~iilv~D~t~~~-------Sf~~----~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~   68 (170)
                      -.+|+|+++|+.+--       .+..    ++.-+.++.+.. -++||.||.||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence            469999999986421       1221    122233343333 6899999999999865

>KOG1424|consensus

Probab=91.15  E-value=0.37  Score=41.41  Aligned_cols=75  Identities=12%  Similarity=0.059  Sum_probs=46.8

Q ss_pred             cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH---HhcC
Q psy17235         12 VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW---SRRS   86 (170)
Q Consensus        12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a---~~~~   86 (170)
                      ++.+|. .+..+|+|+.++|..+|--|..  +..+..++.   +....+|+.||.||..      +++...|+   ...+
T Consensus       165 WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~------~~qr~aWa~YF~~~n  234 (562)
T KOG1424|consen  165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLP------PEQRVAWAEYFRQNN  234 (562)
T ss_pred             HHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCC------HHHHHHHHHHHHhcC
Confidence            344554 3678999999999999977653  233333322   4466788899999864      34444443   3445


Q ss_pred             CCeEEEcccCC
Q psy17235         87 SRRFKPQEVVE   97 (170)
Q Consensus        87 ~~~~~e~Sa~~   97 (170)
                      ++.++ -||..
T Consensus       235 i~~vf-~SA~~  244 (562)
T KOG1424|consen  235 IPVVF-FSALA  244 (562)
T ss_pred             ceEEE-Eeccc
Confidence            65433 36554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=90.81  E-value=0.48  Score=37.97  Aligned_cols=49  Identities=10%  Similarity=-0.103  Sum_probs=32.0

Q ss_pred             CeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEcccCCcchhhhH
Q psy17235         55 AKIFLCGNKSDLEGTTPQVTEADMENFWSRR-SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        55 ~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+-++|.||+|+.. ...-..+...+..+.. ....++++||++|+|+++.
T Consensus       231 ~ADIVVLNKiDLl~-~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L  280 (290)
T PRK10463        231 AASLMLLNKVDLLP-YLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW  280 (290)
T ss_pred             cCcEEEEEhHHcCc-ccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHH
Confidence            56788999999864 2111233333444443 3345888999999999875

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=90.62  E-value=3  Score=31.81  Aligned_cols=57  Identities=30%  Similarity=0.443  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q psy17235        101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVN  157 (170)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  157 (170)
                      |.++..-...+...|..+.+..+.++..|...|+..|+++|..-++......+..+.
T Consensus       152 i~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie  208 (216)
T cd07627         152 LEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIE  208 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566778899999999999999999999999999998777766665554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PTZ00258 GTP-binding protein; Provisional

Probab=90.56  E-value=1.5  Score=36.65  Aligned_cols=44  Identities=11%  Similarity=0.054  Sum_probs=26.5

Q ss_pred             CCeEEEEeeCC--CCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCc
Q psy17235         54 NAKIFLCGNKS--DLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEP   98 (170)
Q Consensus        54 ~~pvvlvgnK~--Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~   98 (170)
                      .-|+++|+|+.  |+.. ...-..+....++...+...++.+||+-.
T Consensus       220 ~KP~iyv~N~~E~D~~~-~~~~~~~~l~~~~~~~~~~~~v~~sa~~E  265 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIR-QKNKWLAKIKEWVGEKGGGPIIPYSAEFE  265 (390)
T ss_pred             cCCEEEEEECchhhhcc-cchHHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence            35899999999  7621 11113345566666664335777787654

>KOG0464|consensus

Probab=90.55  E-value=0.075  Score=44.65  Aligned_cols=65  Identities=17%  Similarity=0.091  Sum_probs=49.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+.||||+-.|.--....++--||++.|||.+-.-.-+.+.-|.+. .+  -++|-....||+|...
T Consensus       104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-dk--~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-DK--FKIPAHCFINKMDKLA  168 (753)
T ss_pred             EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-cc--cCCchhhhhhhhhhhh
Confidence            46899999999988889999999999999998764333334456432 11  3788888899999643

>KOG0447|consensus

Probab=90.54  E-value=8  Score=34.12  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=46.7

Q ss_pred             cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh
Q psy17235         12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADMENFWSR   84 (170)
Q Consensus        12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~   84 (170)
                      ..+|...|..+.+++|+|.-=   -|.+.-+.-...+...+  .+-..|+|.+|.|+.+ ...-+++.++++..-
T Consensus       438 I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleG  508 (980)
T KOG0447|consen  438 IFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEG  508 (980)
T ss_pred             HHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhc
Confidence            456889999999999999842   23333233333444333  3567789999999987 666677777766543

>KOG2484|consensus

Probab=90.33  E-value=0.44  Score=39.76  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             hhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235         16 TSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus        16 ~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ....+..+|+||-|.|..||.+-..  +..|   +.+..++-..|+|.||+||..
T Consensus       140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DLVP  191 (435)
T KOG2484|consen  140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDLVP  191 (435)
T ss_pred             HHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhccCC
Confidence            3444567999999999999977543  2333   223335688999999999864

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=90.21  E-value=1.3  Score=29.60  Aligned_cols=59  Identities=20%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-C-CCeEEEEeeC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-E-NAKIFLCGNK   63 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~-~~pvvlvgnK   63 (170)
                      -|.|||+...  ......+..+|.++++.+. +..|+..+..+++.+.+.. + ...+.+|.|+
T Consensus        46 IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          46 VVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             EEEeCCCCcC--HHHHHHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4789988643  2334467889999998864 4677777777777776654 3 4566677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=89.81  E-value=1.2  Score=33.70  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=43.0

Q ss_pred             CeEEecCCcccc--------ccch---hhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERV--------ASIT---SSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~--------~~~~---~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.|+||||--.-        ..+.   .....+.|++++|+..+. -+-..  +-.++..+-...----++||.+..|..
T Consensus        51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~  129 (212)
T PF04548_consen   51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL  129 (212)
T ss_dssp             EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred             EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence            468999993211        1111   123457999999999883 23222  122333322111011356667777754


Q ss_pred             CCCCCC----C---HHHHHHHHHhcCCCeEEEcccC
Q psy17235         68 GTTPQV----T---EADMENFWSRRSSRRFKPQEVV   96 (170)
Q Consensus        68 ~~~~~v----~---~~~~~~~a~~~~~~~~~e~Sa~   96 (170)
                      . ...+    .   ....+.+.+..+.. |...+.+
T Consensus       130 ~-~~~~~~~l~~~~~~~l~~li~~c~~R-~~~f~n~  163 (212)
T PF04548_consen  130 E-DDSLEDYLKKESNEALQELIEKCGGR-YHVFNNK  163 (212)
T ss_dssp             T-TTTHHHHHHHHHHHHHHHHHHHTTTC-EEECCTT
T ss_pred             c-cccHHHHHhccCchhHhHHhhhcCCE-EEEEecc
Confidence            4 2221    1   12355666767764 4444443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=89.65  E-value=1.3  Score=34.62  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             EEec-CCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          3 LWDT-GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         3 iwDt-~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      |.|| +|-|.|.   +-..+++|.+|.|.|.+- .|+....+. .++.+...=-++.+|.||.|-.       .......
T Consensus       138 ivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg~k~i~~V~NKv~e~-------e~~~~~~  205 (255)
T COG3640         138 IVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELGIKRIFVVLNKVDEE-------EELLREL  205 (255)
T ss_pred             EEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhCCceEEEEEeeccch-------hHHHHhh
Confidence            6777 6777663   334678999999999764 455444332 2222222226788999999843       3445555


Q ss_pred             HHhcCC
Q psy17235         82 WSRRSS   87 (170)
Q Consensus        82 a~~~~~   87 (170)
                      +.+.+.
T Consensus       206 ~~~~~~  211 (255)
T COG3640         206 AEELGL  211 (255)
T ss_pred             hhccCC
Confidence            656554

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=89.21  E-value=3.1  Score=34.45  Aligned_cols=78  Identities=13%  Similarity=0.024  Sum_probs=56.3

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      .++|.| + ........++.++|-+++|.+.+ -.|+.+.++.+..+.+.. ++.|..+|.|+.+...   ..+   ...
T Consensus       221 vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~---~~~---~~d  291 (366)
T COG4963         221 VVVDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK---RPE---PSD  291 (366)
T ss_pred             EEEcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC---CCC---HHH
Confidence            577877 2 23445577899999999999864 578888889999988887 6778889999998644   333   333


Q ss_pred             HHHhcCCC
Q psy17235         81 FWSRRSSR   88 (170)
Q Consensus        81 ~a~~~~~~   88 (170)
                      +....+++
T Consensus       292 l~~~~~i~  299 (366)
T COG4963         292 LEEILGIE  299 (366)
T ss_pred             HHHHhCCc
Confidence            44445543

>KOG2423|consensus

Probab=88.08  E-value=2.9  Score=35.24  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=52.8

Q ss_pred             cchhhhcc---CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235         14 SITSSYYK---FAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR   88 (170)
Q Consensus        14 ~~~~~~~~---~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~   88 (170)
                      .+|.-.|+   .+|++|-|.|..||.--  ..+..++   ....+.--+|+|.|||||..  .-|+......+++++--.
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~yl---kke~phKHli~vLNKvDLVP--twvt~~Wv~~lSkeyPTi  276 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIYVLNKVDLVP--TWVTAKWVRHLSKEYPTI  276 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHH---hhcCCcceeEEEeecccccc--HHHHHHHHHHHhhhCcce
Confidence            35544444   78999999999998532  2333332   33336777999999999974  456666677777776554


Q ss_pred             eEEEcccCCcch
Q psy17235         89 RFKPQEVVEPQE  100 (170)
Q Consensus        89 ~~~e~Sa~~~~~  100 (170)
                      .|. .|..++-|
T Consensus       277 AfH-Asi~nsfG  287 (572)
T KOG2423|consen  277 AFH-ASINNSFG  287 (572)
T ss_pred             eee-hhhcCccc
Confidence            554 45555544

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=87.97  E-value=3.9  Score=31.15  Aligned_cols=81  Identities=21%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~-~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      -|.|||+.  ...+....+..+|.++++...+ ..++..+..-+..+.. .....++-+|.|+.|...   .+..+-...
T Consensus       118 viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~---~~~~~~~~~  191 (246)
T TIGR03371       118 VLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPAR---QLSRDVRAV  191 (246)
T ss_pred             EEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcch---hhHHHHHHH
Confidence            47899984  2345566778999999998764 5566666533333333 224455678899998543   333333334


Q ss_pred             HHHhcCCC
Q psy17235         81 FWSRRSSR   88 (170)
Q Consensus        81 ~a~~~~~~   88 (170)
                      +.+.++.+
T Consensus       192 ~~~~~~~~  199 (246)
T TIGR03371       192 LRQTLGSR  199 (246)
T ss_pred             HHHHhccc
Confidence            44555553

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=87.31  E-value=10  Score=28.41  Aligned_cols=84  Identities=15%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235          2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pv-vlvgnK~Dl~~~~~~v~~~~   77 (170)
                      -|.||+|.-....+ .....+.+|.++++.+. +..++..+...++.+....  .++++ .++.|+.+..     ...+.
T Consensus       120 ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~-----~~~~~  193 (212)
T cd02117         120 VLYDVLGDVVCGGFAMPIREGKADEIYIVTSG-EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD-----RETEL  193 (212)
T ss_pred             EEEecCCCceecccccccccccCcEEEEEecc-cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc-----cHHHH
Confidence            37888765422222 11123479999999875 4566655554444444432  24443 4889999842     33455


Q ss_pred             HHHHHHhcCCCeEE
Q psy17235         78 MENFWSRRSSRRFK   91 (170)
Q Consensus        78 ~~~~a~~~~~~~~~   91 (170)
                      .+++.+.++.+.+-
T Consensus       194 ~~~~~~~~~~~vl~  207 (212)
T cd02117         194 IDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHcCCCEEE
Confidence            67788888876543

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=85.39  E-value=2.1  Score=31.25  Aligned_cols=64  Identities=14%  Similarity=-0.010  Sum_probs=46.1

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC-eEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA-KIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~-pvvlvgnK~Dl~~   68 (170)
                      -|.|||+.-..  .....+..+|.+|++.+.+. .+...+..+++.+....... .+-+|.|+.+...
T Consensus        98 iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen   98 IIIDTPPGLSD--PVRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN  162 (195)
T ss_dssp             EEEEECSSSSH--HHHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred             eeecccccccH--HHHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence            47899875432  25567789999999998664 66888888887777665333 4568899998653

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=83.69  E-value=11  Score=29.28  Aligned_cols=79  Identities=14%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCCCCCCCCCCCCHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~Dl~~~~~~v~~~~~   78 (170)
                      -|.||+|.-.... ....+..||.+|++... +..++..+...+..+...  ..++++. +|.|+.+.        .+..
T Consensus       121 viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--------~~~~  190 (270)
T PRK13185        121 ILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--------TDLI  190 (270)
T ss_pred             EEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--------HHHH
Confidence            4789977532222 12236679999998854 566777666655544432  2566654 78899762        2345


Q ss_pred             HHHHHhcCCCeE
Q psy17235         79 ENFWSRRSSRRF   90 (170)
Q Consensus        79 ~~~a~~~~~~~~   90 (170)
                      .++.+.++.+.+
T Consensus       191 ~~~~~~~g~~vl  202 (270)
T PRK13185        191 DKFNEAVGLKVL  202 (270)
T ss_pred             HHHHHHcCCCEE
Confidence            667777776544

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=82.88  E-value=18  Score=27.46  Aligned_cols=59  Identities=34%  Similarity=0.501  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q psy17235        102 VEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILK  160 (170)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  160 (170)
                      .++..-...+...|..+.+..+.++..|...+...|+..+...++.+....++.+....
T Consensus       173 ~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We  231 (236)
T PF09325_consen  173 EEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWE  231 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445667888899999999999999999999999999999999988887776543

This is the C-terminal dimerisation domain [].

>KOG0466|consensus

Probab=81.92  E-value=0.85  Score=37.06  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             eEEecCCccccccchhhhccC---CcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-C
Q psy17235          2 QLWDTGGMERVASITSSYYKF---AEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-V   73 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v   73 (170)
                      .+.|+||++-...   ..+.+   -|+.++....+.    |++-+++...  ++.+   ---++++-||.|+...... -
T Consensus       128 SfVDCPGHDiLMa---TMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~---LkhiiilQNKiDli~e~~A~e  199 (466)
T KOG0466|consen  128 SFVDCPGHDILMA---TMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK---LKHIIILQNKIDLIKESQALE  199 (466)
T ss_pred             EeccCCchHHHHH---HHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh---hceEEEEechhhhhhHHHHHH
Confidence            5789999976432   33444   367777765543    4555544221  2222   2357889999999752111 1


Q ss_pred             CHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         74 TEADMENFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      ..++++.|.+.-..  ...+.+||.-..|++.+
T Consensus       200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v  232 (466)
T KOG0466|consen  200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVV  232 (466)
T ss_pred             HHHHHHHHHhccccCCCceeeehhhhccChHHH
Confidence            23456666655433  24778999999999865

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=81.81  E-value=18  Score=28.11  Aligned_cols=53  Identities=26%  Similarity=0.426  Sum_probs=40.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy17235        101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAE  153 (170)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  153 (170)
                      |.++..-...+...|..+++..+.++..|...|+.+|+..+..-.+-+....+
T Consensus       168 v~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qk  220 (234)
T cd07664         168 IKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQ  220 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566789999999999999999999999999999766655554333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=81.61  E-value=9.7  Score=29.13  Aligned_cols=61  Identities=16%  Similarity=0.013  Sum_probs=40.9

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      -|+|+|+.-.  ......+..+|.+|++...+ ..++..+...+..+.... ..++.++.|+.+.
T Consensus       115 viiD~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~  175 (261)
T TIGR01968       115 VIIDCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG-IEKIHLIVNRLRP  175 (261)
T ss_pred             EEEeCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence            4789987643  22344567899999988754 567777766666655443 2356778899875

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=81.58  E-value=11  Score=29.91  Aligned_cols=88  Identities=9%  Similarity=-0.078  Sum_probs=49.3

Q ss_pred             eEEecCCccccccch-----h--hh-----ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          2 QLWDTGGMERVASIT-----S--SY-----YKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~-----~--~~-----~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      -|.||+|.-......     .  ..     -..+|.+++|.|.+.. +.+..+    ..+.+..  -+--+|.||.|...
T Consensus       158 ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~--~~~g~IlTKlDe~~  231 (272)
T TIGR00064       158 VLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV--GLTGIILTKLDGTA  231 (272)
T ss_pred             EEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC--CCCEEEEEccCCCC
Confidence            478999975432211     0  01     1248999999999753 233333    2222221  13457789999754


Q ss_pred             CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235         69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE  103 (170)
Q Consensus        69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~  103 (170)
                         .  .-.+..++...+.|..+.+   +|+++++
T Consensus       232 ---~--~G~~l~~~~~~~~Pi~~~~---~Gq~~~d  258 (272)
T TIGR00064       232 ---K--GGIILSIAYELKLPIKFIG---VGEKIDD  258 (272)
T ss_pred             ---C--ccHHHHHHHHHCcCEEEEe---CCCChHh
Confidence               1  1234445556788766655   6766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=81.50  E-value=10  Score=33.19  Aligned_cols=48  Identities=15%  Similarity=0.204  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe
Q psy17235         37 SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRR   89 (170)
Q Consensus        37 Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~   89 (170)
                      -|.++.+.++.++++  ++|++|+.||.|...   .-..+..+++|.+.|++.
T Consensus       357 Gl~NL~RHIenvr~F--GvPvVVAINKFd~DT---e~Ei~~I~~~c~e~Gv~v  404 (557)
T PRK13505        357 GFANLERHIENIRKF--GVPVVVAINKFVTDT---DAEIAALKELCEELGVEV  404 (557)
T ss_pred             HHHHHHHHHHHHHHc--CCCEEEEEeCCCCCC---HHHHHHHHHHHHHcCCCE
Confidence            355666666666665  799999999999754   323456889999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-11
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-11
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-11
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-11
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-11
4fmc_B	171	Espg-Rab1 Complex Length = 171		7e-11
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		8e-11
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-11
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-11
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		9e-11
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		9e-11
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-10
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-10
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-10
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-10
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-10
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-10
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-10
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-10
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-10
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		6e-10
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-10
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		7e-10
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-09
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-09
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-09
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-09
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-09
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		8e-09
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-09
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		8e-09
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-09
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-08
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-08
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-08
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-08
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-08
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-08
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-08
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-08
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-08
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-08
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-08
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-08
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-08
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-08
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-08
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-08
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-08
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-08
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-08
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-08
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-08
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-08
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		8e-08
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		9e-08
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-08
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-08
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-08
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-07
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-07
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-07
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-07
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-07
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-07
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-07
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-07
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-07
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-07
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-07
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-07
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-07
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		5e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-07
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-07
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-07
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-07
1byu_A	216	Canine Gdp-Ran Length = 216		5e-07
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-07
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-07
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-07
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-07
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-07
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-07
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-07
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-07
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-07
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-07
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		8e-07
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		9e-07
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		9e-07
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-06
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-06
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-06
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-06
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-06
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-06
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-06
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-06
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-06
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-06
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-06
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-06
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-06
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-06
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-06
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		6e-06
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-06
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-05
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-05
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-05
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-05
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-05
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-05
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-05
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		5e-05
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-05
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-05
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-05
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		6e-05
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-05
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		6e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		6e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-05
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-05
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-05
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-05
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		9e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-04
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-04
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-04
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-04
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-04
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-04
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-04
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-04
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-04
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-04
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-04
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-04
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-04
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-04
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-04
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-04
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-04
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-04
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-04
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-04
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-04
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-04
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-04
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-04
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-04
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-04
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-04
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-04
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-04
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-04
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-04
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-04
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-04
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-04
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-04
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-04
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-04
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-04
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-04
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-04
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-04
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-04
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-04
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-04
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-04
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-04
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		5e-04
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-04
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		8e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		9e-04

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 6/71 (8%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
           +QLWDT G+ER  S+T+++++ A   +L+F L N  SF    + +SQ  L++  Y+EN  
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYSENPD 129
Query: 57  IFLCGNKSDLE 67
           I LCGNKSDLE
Sbjct: 130 IVLCGNKSDLE 140

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
Query: 60  CGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
            GNK D E T  ++T    E F  + +  RF
Sbjct: 137 VGNKLDCE-TDREITRQQGEKFAQQITGMRF 166

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 50  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 109
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 110 VGNKCDL--TTKKVVD 123

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 57  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 117 VGNKCDL--TTKKVVD 130

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 144 VGNKCDL--TTKKVVD 157

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 57  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 117 VGNKCDL--TTKKVVD 130

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  S+  + Q L EI  YA EN    L
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
Query: 60  CGNKSDLEGTTPQVTE 75
            GNKSDL  TT +V +
Sbjct: 120 VGNKSDL--TTKKVVD 133

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 127 VGNKCDL--TTKKVVD 140

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 127 VGNKCDL--TTKKVVD 140

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 76  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 60  CGNKSDLEGTTPQVTE 75
            GNK DL  TT +V +
Sbjct: 136 VGNKCDL--TTKKVVD 149

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  S+  + Q L EI  YA EN    L
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
Query: 60  CGNKSDLEGTTPQVTE 75
            GNKSDL  TT +V +
Sbjct: 120 VGNKSDL--TTKKVVD 133

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 74  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133
Query: 60  CGNKSDLE 67
            GNK D+E
Sbjct: 134 VGNKCDME 141

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G+ER  +IT++YY+ A   IL + + N  SF+ +     +I TY+ +NA++ L
Sbjct: 59  LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118
Query: 60  CGNKSDLE 67
            GNK D E
Sbjct: 119 VGNKCDXE 126

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 56  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 60  CGNKSDLE 67
            GNK D+E
Sbjct: 116 VGNKCDME 123

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 49  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 108
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 109 VGNKCDL 115

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G+ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I L
Sbjct: 59  LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 118
Query: 60  CGNKSDLE 67
           CGNK DL+
Sbjct: 119 CGNKKDLD 126

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF  + Q + EI  YA EN    L
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLL 119
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 120 VGNKCDL 126

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 137 VGNKIDL 143

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +L++ + N  SF  +     +I TY+ +NA++ L
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
Query: 60  CGNKSDLE 67
            GNK DLE
Sbjct: 133 VGNKCDLE 140

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +AE    + L 
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 137 GNKSDL 142

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +AE    + L 
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 121
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 122 GNKSDL 127

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +  T A  N  + L
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135
Query: 60  CGNKSDLE 67
           CGNK DL+
Sbjct: 136 CGNKKDLD 143

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I L
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 60  CGNKSDLE 67
           CGNK DL+
Sbjct: 121 CGNKKDLD 128

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I L
Sbjct: 62  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 121
Query: 60  CGNKSDLE 67
           CGNK DL+
Sbjct: 122 CGNKKDLD 129

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 118
Query: 60  CGNKSDLEGTTPQVTE 75
            G K DL  TT +V +
Sbjct: 119 VGIKCDL--TTKKVVD 132

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A+LV+ +    SF  + + L E+   A+ N  I L 
Sbjct: 60  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLV 119
Query: 61  GNKSDLE 67
           GNKSDL+
Sbjct: 120 GNKSDLK 126

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
Query: 60  CGNKSDLEGTTPQVTEADM 78
            GNK DL+    +V E D+
Sbjct: 119 VGNKCDLK--DKRVVEYDV 135

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
Query: 60  CGNKSDLEGTTPQVTEADM 78
            GNK DL+    +V E D+
Sbjct: 119 VGNKCDLK--DKRVVEYDV 135

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +QLWDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 71  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130
Query: 60  CGNKSDLEGTTPQVTEAD 77
            GNKSD+E    +V  AD
Sbjct: 131 VGNKSDME---TRVVTAD 145

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA+ +  + L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 60  CGNKSD 65
            GNK D
Sbjct: 122 LGNKVD 127

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +QLWDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 58  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 117
Query: 60  CGNKSDLE 67
            GNKSD+E
Sbjct: 118 VGNKSDME 125

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 81  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 141 GNKSDL 146

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA +  +  L
Sbjct: 72  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
Query: 60  CGNKSDLEGTTPQVTEADM 78
            GNK DL+    +V E D+
Sbjct: 132 VGNKCDLK--DKRVVEYDV 148

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +Q+WDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60  CGNKSDLEGTTPQVTEAD 77
            GNKSD+E    +V  AD
Sbjct: 114 VGNKSDME---TRVVTAD 128

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 60  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 119
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 120 GNKSDL 125

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L 
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI 121
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 122 GNKSDL 127

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +QLWDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 54  LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60  CGNKSDLE 67
            GNKSD E
Sbjct: 114 VGNKSDXE 121

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 63  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV 122
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 123 GNKSDL 128

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
           +Q+WDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60  CGNKSDLE 67
            GNKSD E
Sbjct: 114 VGNKSDXE 121

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT SYY+ A  AIL + +   +SF  +   + ++  YA  N    L
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 60  CGNKSDL 66
            GNKSDL
Sbjct: 140 IGNKSDL 146

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L 
Sbjct: 65  QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI 124
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 125 GNKSDL 130

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G+ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 57  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV 116
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 117 GNKSDL 122

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 81  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 141 GNKSDL 146

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA     E+ 
Sbjct: 62  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 56  KIFLCGNKSDLE 67
              + GNK+D++
Sbjct: 122 PFVILGNKTDIK 133

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 57  QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 117 GNKSDL 122

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
           Q+WDT G ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A+ N  I L 
Sbjct: 72  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 131
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 132 GNKSDL 137

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G ER  S+  SY + +  A++V+ + N  SFH  S+ + ++ T    +  I L
Sbjct: 65  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 125 VGNKTDL 131

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFL 59
           +Q+WDT G E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   + + N  I L
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131
Query: 60  CGNKSDLE 67
            GNKSDLE
Sbjct: 132 IGNKSDLE 139

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125
Query: 60  CGNKSDLE 67
            GNK+DLE
Sbjct: 126 IGNKADLE 133

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
           +QLWDT G+ER  S+T+++++ A   +L+F L +  SF    + +SQ  L+   Y EN  
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 129
Query: 57  IFLCGNKSDL 66
           I L GNK+DL
Sbjct: 130 IVLIGNKADL 139

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
           +QLWDT G+ER  S+T+++++ A   +L+F L +  SF    + +SQ  L+   Y EN  
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 129
Query: 57  IFLCGNKSDL 66
           I L GNK+DL
Sbjct: 130 IVLIGNKADL 139

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L
Sbjct: 61  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIML 120
Query: 60  CGNKSDLE 67
            GNKSDLE
Sbjct: 121 IGNKSDLE 128

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G+ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 64  LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 124 VGNKTDL 130

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA     E+ 
Sbjct: 58  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 56  KIFLCGNKSDL 66
              + GNK D+
Sbjct: 118 PFVILGNKIDI 128

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA     E+ 
Sbjct: 60  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 56  KIFLCGNKSDL 66
              + GNK D+
Sbjct: 120 PFVILGNKIDI 130

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
           +QLWDT G ER  S+T+++++ A   +L+F L +  SF    + +SQ  L+   Y EN  
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 143
Query: 57  IFLCGNKSDLE 67
           I L GNK+DL 
Sbjct: 144 IVLIGNKADLP 154

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ--HLLEIVTYAENAKIF 58
           +QLWDT G+ER  S+T+++++ A   +L F L +  SF  +      L+   Y EN  I 
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 59  LCGNKSDL 66
           L GNK+DL
Sbjct: 132 LIGNKADL 139

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ--HLLEIVTYAENAKIF 58
           +QLWDT G+ER  S+T+++++ A   +L F L +  SF  +      L+   Y EN  I 
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 59  LCGNKSDL 66
           L GNK+DL
Sbjct: 132 LIGNKADL 139

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +Q+WDT G ER  +ITS+YY+     I+V+ + +A SF  + + L EI    ++    L 
Sbjct: 60  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119
Query: 61  GNKSD 65
           GNK+D
Sbjct: 120 GNKND 124

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A AAI+VF + N ASF    + + E+      N  + L 
Sbjct: 64  EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123
Query: 61  GNKSDL 66
           GNKSDL
Sbjct: 124 GNKSDL 129

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G+ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 57  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 117 VGNKTDL 123

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G+ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 127 VGNKTDL 133

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G  R  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L
Sbjct: 81  LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 140
Query: 60  CGNKSDLE 67
            GNK+DLE
Sbjct: 141 IGNKADLE 148

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 57  LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 117 VGNKTDL 123

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 57  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 116
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 117 GNKVDIK 123

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 122
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 123 GNKVDIK 129

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 1   MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYA 52
           +QLWDT G ER   S+   YY+   A + V+ + N ASFH L        QHLL     A
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----A 125
Query: 53  ENAKIFLCGNKSDL 66
            +    L GNK DL
Sbjct: 126 NDIPRILVGNKCDL 139

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           +Q+WDT G ER  S+ + +Y+ A+  +L FS+D+  SF  L     E + YA     E+ 
Sbjct: 58  LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 56  KIFLCGNKSDLEGTTPQVTEAD---MEN 80
              + GNK D E       EA    MEN
Sbjct: 118 PFVVLGNKVDKEDRQVTTEEAQTWCMEN 145

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G ER  S+  SY + + AAI+V+ + N  SF   ++ + +I+    ++  I L
Sbjct: 52  LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 111
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 112 VGNKTDL 118

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G ER  S+  SY + +  A++V+ + N  SF   S+ + ++ T    +  I L
Sbjct: 53  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML 112
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 113 VGNKTDL 119

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +QLWDT G ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 52  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 111
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 112 VGNKTDL 118

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-- 58
           + +WDT G ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY     I   
Sbjct: 66  LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX 125
Query: 59  LCGNKSDLE 67
           L GNK D E
Sbjct: 126 LVGNKIDKE 134

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G+ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56  KIFLCGNKSDLE 67
              + GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 65  VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 124
Query: 63  KSDLE 67
           K D++
Sbjct: 125 KVDVK 129

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 55  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 114
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 115 GNKVDVK 121

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 121 GNKVDIK 127

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G+ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 57  EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 116
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 117 GNKADL 122

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 121 GNKVDIK 127

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G+E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 56  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 115
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 116 GNKVDVK 122

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 68  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 63  KSDLE 67
           K D++
Sbjct: 128 KVDIK 132

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 63  VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63  KSDLE 67
           K D++
Sbjct: 123 KVDIK 127

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 68  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 63  KSDLE 67
           K D++
Sbjct: 128 KVDIK 132

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LCGN
Sbjct: 56  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 115
Query: 63  KSDLE 67
           K D++
Sbjct: 116 KVDIK 120

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L
Sbjct: 58  FEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 117
Query: 60  CGNKSDL 66
            GNK+DL
Sbjct: 118 SGNKADL 124

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 1   MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYA 52
           +QLWDT G ER   S+   YY+   A + V+   N ASFH L        QHLL     A
Sbjct: 80  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL-----A 134
Query: 53  ENAKIFLCGNKSDL 66
            +    L GNK DL
Sbjct: 135 NDIPRILVGNKCDL 148

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G+ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L 
Sbjct: 57  EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 116
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 117 GNKADL 122

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G E+   +   YY  A+ AI+ F + +  ++  +     ++V   EN  I LC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 121 GNKVDIK 127

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 59  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 118
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 119 GNKADL 124

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56  KIFLCGNKSDLE 67
              + GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 118 GNKADL 123

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + LWDT G E   +IT +YY+ A+A +LVFS  +  SF  +S    ++V    +    L 
Sbjct: 56  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 115
Query: 61  GNKSDL 66
            NK DL
Sbjct: 116 QNKIDL 121

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56  KIFLCGNKSDLE 67
              + GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LV+ + NA+SF  +     E + +A     E  
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 56  KIFLCGNKSDLEGTTPQVTE 75
              + GNK D E +   V+E
Sbjct: 120 PFVILGNKIDAEESKKIVSE 139

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L 
Sbjct: 57  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 116
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 117 GNKADL 122

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  N  I L 
Sbjct: 55  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 114
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 115 GNKADL 120

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56  KIFLCGNKSDLE 67
              + GNK D E
Sbjct: 119 PFVVLGNKIDFE 130

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCG 61
           +WDT G ER  S+   YY+ + AA++V+ +    SF+ L + + E+  +  EN  + + G
Sbjct: 76  IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135
Query: 62  NKSDL 66
           NK DL
Sbjct: 136 NKCDL 140

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  +
Sbjct: 57  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 116
Query: 60  CGNKSDL 66
            GNK D+
Sbjct: 117 LGNKCDV 123

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  +
Sbjct: 59  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118
Query: 60  CGNKSDL 66
            GNK D+
Sbjct: 119 LGNKCDV 125

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  +F      + E+   A  + +  L 
Sbjct: 60  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALA 119
Query: 61  GNKSDL 66
           GNK+DL
Sbjct: 120 GNKADL 125

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +QLWDT G ER  SI  SY++ A+  +L++ +    SF  + + +  I   A E   I L
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
Query: 60  CGNKSDLEGT 69
            GNK+D+  T
Sbjct: 139 VGNKADIRDT 148

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E  + +    Y+ A+  +L FSL + AS+ +VL + + E+  +A N  I L
Sbjct: 59  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL 118
Query: 60  CGNKSDLE 67
            G K DL 
Sbjct: 119 VGTKLDLR 126

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCG 61
           +WDT G+ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   + +  + G
Sbjct: 59  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118
Query: 62  NKSDLEGTTPQVTEADMENF 81
           NK DL     +V E D +++
Sbjct: 119 NKCDLTDVR-EVMERDAKDY 137

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G+E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 56  IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 59  LCGNKSDLE 67
           L GNKSDLE
Sbjct: 116 LVGNKSDLE 124

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV--TYAENAKIF 58
            ++WDT G ER AS+   YY+ A+AA++V+ +    SF + ++H ++ +    +++  I 
Sbjct: 54  FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF-IKARHWVKELHEQASKDIIIA 112
Query: 59  LCGNKSD 65
           L GNK D
Sbjct: 113 LVGNKID 119

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DTGG E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
           + + DT G+E  A+I  +Y++  E  +LVFS+    SF   +   + +L +    +   +
Sbjct: 57  IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 58  FLCGNKSDLE 67
            + GNKSDLE
Sbjct: 117 LVVGNKSDLE 126

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
           + + DT G+E  A+I  +Y++  E  +LVFS+    SF   +   + +L +    +   +
Sbjct: 53  IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 58  FLCGNKSDLE 67
            + GNKSDLE
Sbjct: 113 LVVGNKSDLE 122

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 59  LCGNKSDLE 67
           L GNKSDLE
Sbjct: 124 LVGNKSDLE 132

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCG 61
           +WDT G ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   + +  + G
Sbjct: 58  IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 117
Query: 62  NKSDLEGTTPQVTEADMENF 81
           NK DL     +V E D +++
Sbjct: 118 NKCDLTDVR-EVMERDAKDY 136

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + +WDT G ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 115
Query: 61  --GNKSDLE 67
             GNK DLE
Sbjct: 116 IVGNKIDLE 124

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNKSDL   T +  +A
Sbjct: 113 LVGNKSDLAARTVESRQA 130

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL G T +  +A
Sbjct: 113 LVGNKCDLAGRTVESRQA 130

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + +WDT G ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC
Sbjct: 71  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 129
Query: 61  --GNKSDLE 67
             GNK DLE
Sbjct: 130 IVGNKIDLE 138

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 68  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 59  LCGNKSDLE 67
           L GNKSDLE
Sbjct: 128 LVGNKSDLE 136

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 56  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 59  LCGNKSDLE 67
           L GNKSDLE
Sbjct: 116 LVGNKSDLE 124

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + +WDT G ER  ++   YY+ +  AILV+ + +  SF  +   + E+     N +I LC
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 115
Query: 61  --GNKSDLE 67
             GNK DLE
Sbjct: 116 IVGNKIDLE 124

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + 
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNKSDL   T    +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + 
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNKSDL   T    +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 54  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 59  LCGNKSDLE 67
           L GNKSDLE
Sbjct: 114 LVGNKSDLE 122

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH---VLSQHLLEIVTYAENAKI 57
           +++ DT G E+ AS+   Y K  +  ILV+SL N  SF     +   ++ +  Y E   +
Sbjct: 53  LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPV 111
Query: 58  FLCGNKSDL 66
            L GNK DL
Sbjct: 112 ILVGNKVDL 120

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 265 VGTKLDL 271

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 265 VGTKLDL 271

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASF HV ++   E+  +  N  I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 265 VGTKLDL 271

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + 
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNKSDL   T    +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3   LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
           +WDT G ER ASI   YY+ A  AI+VF + N+ +    ++  +  +  + N  I L  N
Sbjct: 97  IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD-RAKTWVNQLKISSNYIIILVAN 155
Query: 63  KSD 65
           K D
Sbjct: 156 KID 158

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y+ A+  IL FSL + AS+ +V  + + E+  YA    I L
Sbjct: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 116 VGTKLDL 122

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 58  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 58  LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 118 VGNKKDL 124

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G+E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFL 59
           + LWDT G E    +    Y+ A+  IL FSL + AS+  +S+  + E+  YA    I L
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 118 VGTKLDL 124

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 115 VGNKKDL 121

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 59  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 119 LVGNKCDLAARTVESRQA 136

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 53  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 113 VGNKKDL 119

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 53  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 113 VGNKKDL 119

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 115 VGNKKDL 121

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 115 VGNKKDL 121

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 115 VGNKKDL 121

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + 
Sbjct: 71  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T    +A
Sbjct: 131 LVGNKCDLPSRTVDTKQA 148

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 115 VGNKKDL 121

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 60  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 120 LVGNKCDLAARTVESRQA 137

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 116 VGNKKDL 122

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 58  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 118 VGNKKDL 124

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 117 VGNKKDL 123

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 116 VGNKKDL 122

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 117 VGNKKDL 123

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 59  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 118
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 119 VGNKKDL 125

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 117 VGNKKDL 123

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GN+ DL   T +  +A
Sbjct: 113 LVGNRCDLAARTVESRQA 130

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I  V  +E+  + 
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T    +A
Sbjct: 114 LVGNKCDLPSRTVDTKQA 131

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I  V  +++  + 
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59  LCGNKSDLEGTTPQVTEA 76
           L GNK DL   T +  +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y+ A+  +L FSL + AS+ ++  + L E+  YA    I L
Sbjct: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVL 115
Query: 60  CGNKSDLE 67
            G K DL 
Sbjct: 116 VGTKLDLR 123

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 135 VGNKKDL 141

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S  ++  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIIL 134
Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 135 VGNKKDL 141

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 113 VGTKLDL 119

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L
Sbjct: 53  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 113 VGTKLDL 119

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASF +V ++   E+  +  N  I L
Sbjct: 53  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60  CGNKSDL 66
            G K DL
Sbjct: 113 VGTKLDL 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-20
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-20
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-19
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-19
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-19
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-19
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-19
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-19
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-19
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-19
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-19
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	9e-19
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-19
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-18
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-18
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-18
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-18
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-18
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-18
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-18
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-18
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-18
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-18
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-17
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-17
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-17
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-17
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-17
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-17
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	4e-17
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-16
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-16
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-16
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-16
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-16
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-16
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-16
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-16
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-15
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-15
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-15
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-15
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-15
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-15
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-15
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-15
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-14
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-14
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-14
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-13
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-13
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-13
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-13
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-13
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-12
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-12
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-12
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-12
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-12
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-12
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-12
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-12
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-12
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-12
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-12
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	7e-12
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	9e-12
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-11
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-10
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	9e-09
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-08
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	1e-06
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-06

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +Q+WDT G ER  +ITS+YY+     I+V+ + +A SF  + + L EI    ++    L 
Sbjct: 60  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK+D       V   D   F
Sbjct: 120 GNKNDDP-ERKVVETEDAYKF 139

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 81.9 bits (203), Expect = 3e-20
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LV+ + NA+SF  +     E + +A     E  
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119

Query: 56  KIFLCGNKSDLEGTTPQVTEADMENF 81
              + GNK D E +   V+E   +  
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQEL 145

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 79.8 bits (198), Expect = 1e-19
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + LWDT G E   +IT +YY+ A+A +LVFS  +  SF  +S    ++V    +    L 
Sbjct: 56  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 115

Query: 61  GNKSDLEGTTPQVTEADMENF 81
            NK DL      +   + E  
Sbjct: 116 QNKIDLL-DDSCIKNEEAEGL 135

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 80.1 bits (198), Expect = 3e-19
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           +QLWDT G ER  S+T+++++ A   +L+F L +  SF  +   + ++   A  EN  I 
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK+DL     +V E      
Sbjct: 146 LIGNKADLP-DQREVNERQAREL 167

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 78.4 bits (194), Expect = 4e-19
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSD+E     VT    E  
Sbjct: 114 VGNKSDMETR--VVTADQGEAL 133

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 78.8 bits (195), Expect = 4e-19
 Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DL  T   V     + F
Sbjct: 127 VGNKCDLT-TKKVVDYTTAKEF 147

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 78.8 bits (195), Expect = 4e-19
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           +QLWDT G+ER  S+T+++++ A   +L+F L N  SF  +   + ++  +A  EN  I 
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           LCGNKSDLE     V E +    
Sbjct: 132 LCGNKSDLE-DQRAVKEEEAREL 153

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 78.4 bits (194), Expect = 5e-19
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  +
Sbjct: 59  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK D+     QV++   E  
Sbjct: 119 LGNKCDVN-DKRQVSKERGEKL 139

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 78.9 bits (195), Expect = 6e-19
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            Q+WDT G ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L
Sbjct: 56  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 115

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL      V   +   F
Sbjct: 116 VGNKSDLR-HLRAVPTDEARAF 136

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 78.4 bits (194), Expect = 6e-19
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 74  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK D+E     V     +  
Sbjct: 134 VGNKCDME-EERVVPTEKGQLL 154

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 78.4 bits (194), Expect = 6e-19
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA  +  + L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK D       V   D E  
Sbjct: 122 LGNKVDSA-HERVVKREDGEKL 142

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 78.5 bits (194), Expect = 6e-19
 Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ A   I+V+ + +  SF+ + Q L EI  YA EN    L
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DL  T   V     + F
Sbjct: 144 VGNKCDLT-TKKVVDYTTAKEF 164

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 78.9 bits (195), Expect = 7e-19
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G E+   +   YY  A+ AI++F + +  ++  +     ++V   EN  I LC
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 125

Query: 61  GNKSDLE 67
           GNK D++
Sbjct: 126 GNKVDIK 132

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 78.5 bits (194), Expect = 7e-19
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G+ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 59  LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK D+E     V+       
Sbjct: 119 VGNKCDME-DERVVSSERGRQL 139

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 79.0 bits (195), Expect = 9e-19
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            Q+WDT G ER  +ITS+YY+ A  A++V+ +  ++S+   +  L E+   A +N  + L
Sbjct: 64  AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL      V   + + F
Sbjct: 124 IGNKSDLA-HLRAVPTEESKTF 144

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 78.0 bits (193), Expect = 9e-19
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            Q+WDT G+ER  +ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L
Sbjct: 80  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL      V   +   F
Sbjct: 140 VGNKSDLR-HLRAVPTDEARAF 160

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +L++ + N  SF  +     +I TY+ +NA++ L
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DLE     V   D    
Sbjct: 133 VGNKCDLE-DERVVPAEDGRRL 153

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +QLWDT G ER  +IT++YY+ A   ILV+ + +  +F  + Q    +  +A + A++ L
Sbjct: 71  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSD+E     VT    E  
Sbjct: 131 VGNKSDMETR--VVTADQGEAL 150

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT SYY+ A  AIL + +   +SF  +   + ++  YA  N    L
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL     +V+ A+ ++ 
Sbjct: 140 IGNKSDLS-ELREVSLAEAQSL 160

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI  YA       L
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DL+     V     + F
Sbjct: 119 VGNKCDLK-DKRVVEYDVAKEF 139

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SITS+YY+ A+  ILV+ +    +F  L + +  I  YA E+A++ L
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK D E T  ++T    E F
Sbjct: 137 VGNKLDCE-TDREITRQQGEKF 157

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            Q+WDT G+ER  +ITS+YY+ A  A+LVF L    ++ V+ + L E+  +A     + L
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL     +V   +   F
Sbjct: 136 VGNKSDLS-QAREVPTEEARMF 156

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  SIT SYY+ A A IL + +    SF  L + L EI  YA       L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK DL     +V++   E F
Sbjct: 137 VGNKIDLA-ERREVSQQRAEEF 157

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 76.8 bits (190), Expect = 3e-18
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +    A +N  I LC
Sbjct: 62  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 121

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK DL+    +VT  +   F
Sbjct: 122 GNKKDLD-ADREVTFLEASRF 141

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G E   SIT SYY+ A  A+LV+ +    +F+ L+  L +   ++  N  I L
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDLE +   V   + E F
Sbjct: 132 IGNKSDLE-SRRDVKREEGEAF 152

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +QLWDT G ER  SI  SY++ A+  +L++ +    SF  + + +  I   A E   I L
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138

Query: 60  CGNKSDLEGTTP-----QVTEADMENF 81
            GNK+D+  T        V     E  
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKL 165

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +  T A  N  + L
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
           CGNK DL+    +VT  +   F
Sbjct: 136 CGNKKDLD-PEREVTFLEASRF 156

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 75.7 bits (187), Expect = 5e-18
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNK+DLE     VT  + + F
Sbjct: 126 IGNKADLE-AQRDVTYEEAKQF 146

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 75.2 bits (186), Expect = 9e-18
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+ + +Y+ ++  +L FS+D++ SF  LS    E + YA     E+ 
Sbjct: 58  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117

Query: 56  KIFLCGNKSDLEGTTPQVTEADMENF 81
              + GNK D+     QV+  + + +
Sbjct: 118 PFVILGNKIDISER--QVSTEEAQAW 141

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
           MQ+WDT G ER  S+  ++Y+ A+  +LVF +    +F  L     E +  A     EN 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118

Query: 56  KIFLCGNKSDLE 67
              + GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
            +WDT G+ER  ++   YY+ + AAI+V+ +    +F  L   + E+  +   +  + + 
Sbjct: 58  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 117

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK DL     +V E D +++
Sbjct: 118 GNKCDLT-DVREVMERDAKDY 137

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
            +WDT G ER  ++   YY+ +  AILV+ + +  SF  +   + E+         + + 
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK DLE     V+  + E++
Sbjct: 118 GNKIDLE-KERHVSIQEAESY 137

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           QLWDT G ER  S+  SY + +  A++V+ + N  SFH  S+ + ++ T    +  I L 
Sbjct: 66  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK+DL     QV+  + E  
Sbjct: 126 GNKTDLS-DKRQVSTEEGERK 145

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 73.7 bits (182), Expect = 2e-17
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A+AAI+V+ + N  SF      + E+   A  N  I L 
Sbjct: 58  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK+DL      V   + +++
Sbjct: 118 GNKADLA-NKRAVDFQEAQSY 137

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 74.7 bits (184), Expect = 3e-17
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           QLWDT G+ER  S+  SY + +  A++V+ + N  SF   ++ + ++ T    +  I L 
Sbjct: 68  QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK+DL     QV+  + E  
Sbjct: 128 GNKTDLA-DKRQVSIEEGERK 147

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER  S+   YY+ A AAI+VF + N ASF    + + E+      N  + L 
Sbjct: 64  EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNKSDL     +VT  D + +
Sbjct: 124 GNKSDLL-DARKVTAEDAQTY 143

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 73.8 bits (182), Expect = 3e-17
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
            +WDT G ER  S+   YY+ + AA++V+ +    SF+ L + + E+  +  EN  + + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 61  GNKSDLEGTTPQVTEADMENF 81
           GNK DL     +V   D + +
Sbjct: 135 GNKCDLS-DIREVPLKDAKEY 154

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 73.3 bits (181), Expect = 4e-17
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
           +Q+WD GG      +   Y   A+  +LV+ + N  SF  L      +   +E ++    
Sbjct: 58  LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117

Query: 57  IFLCGNKSDLEGTTPQVTEADMENF 81
           + L GNK DLE     +       F
Sbjct: 118 VALVGNKIDLE-HMRTIKPEKHLRF 141

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
             +WDT G E+ A +   YY  A  AIL F + +  +   L++ + E        A I +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 60  CGNKSDLE 67
           C NK D++
Sbjct: 123 CANKIDIK 130

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
             +WDT G ER ASI   YY+ A  AI+VF + N+ +       + ++     N  I L 
Sbjct: 95  FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS-SNYIIILV 153

Query: 61  GNKSDLEGTTPQVTEADMENF 81
            NK D      QV   +++ +
Sbjct: 154 ANKIDKNKF--QVDILEVQKY 172

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 72.6 bits (179), Expect = 9e-17
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + DT G E  +++   Y +  +  ++V+S+ + ASF  + +    I+     E+  + 
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L  NK DL     +VT    +  
Sbjct: 128 LVANKVDLMHLR-KVTRDQGKEM 149

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--F 58
           + +WDT G ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY     I   
Sbjct: 66  LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK D E    +V   +   F
Sbjct: 126 LVGNKIDKE--NREVDRNEGLKF 146

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 71.0 bits (175), Expect = 2e-16
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  + Q+  +I      ++  + 
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNKSDL      V     ++ 
Sbjct: 113 LVGNKSDLA--ARTVESRQAQDL 133

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 71.9 bits (177), Expect = 2e-16
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 1   MQLW--DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA--- 55
           ++L+  DT G +      S Y+     AILVF + +  SF         + +   +    
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132

Query: 56  -KIFLCGNKSDLEGTTPQVTEADMENF 81
            +  L  NK+DL     QV     +++
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDW 159

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 71.0 bits (175), Expect = 3e-16
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
           + + DT G E   ++   Y +     +LVF++++  SF+ + +   +I+     ++  + 
Sbjct: 59  LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK+DLE +  QV  ++   F
Sbjct: 119 LVGNKADLE-SQRQVPRSEASAF 140

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFL 59
           + +WD  G E   S    +       + V+ L    +    +   L  I   A ++ + L
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117

Query: 60  CGNKSDLE 67
            G   D+ 
Sbjct: 118 VGTHLDVS 125

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 70.3 bits (173), Expect = 7e-16
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 1   MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 57
           +QLWDT G ER   S+   YY+   A + V+ + N ASFH L   + E   +    +   
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130

Query: 58  FLCGNKSDLEGTTPQVTEADMENF 81
            L GNK DL  +  QV     + F
Sbjct: 131 ILVGNKCDLR-SAIQVPTDLAQKF 153

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 70.3 bits (173), Expect = 7e-16
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I+     EN    
Sbjct: 68  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNKSDLE    QV+  + +N 
Sbjct: 128 LVGNKSDLE-DKRQVSVEEAKNR 149

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 69.8 bits (172), Expect = 7e-16
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I  V   EN    
Sbjct: 54  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNKSDLE    QV+  + +N 
Sbjct: 114 LVGNKSDLE-DKRQVSVEEAKNR 135

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 69.8 bits (172), Expect = 8e-16
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFL 59
            ++D    +    +        +A ++V+S+ +  SF   S+  +++      ++  I L
Sbjct: 52  MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111

Query: 60  CGNKSDLEGTTPQVTEADMENF 81
            GNKSDL  +  +V+  +    
Sbjct: 112 VGNKSDLVRSR-EVSVDEGRAC 132

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 69.5 bits (171), Expect = 1e-15
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---I 57
           +Q+ DT G  +  ++         A ILV+S+ +  S   L     +I     + +   I
Sbjct: 53  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112

Query: 58  FLCGNKSDLEGTTPQVTEADMENF 81
            L GNK D    + +V  ++ E  
Sbjct: 113 MLVGNKCDES-PSREVQSSEAEAL 135

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + DT G E  A+I  +Y++  E  + VFS+    SF   +    +I+     EN    
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNKSDLE    QV+  + +N 
Sbjct: 124 LVGNKSDLE-DKRQVSVEEAKNR 145

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 69.0 bits (170), Expect = 2e-15
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           +++ DT G E+ AS+   Y K  +  ILV+SL N  SF  +     +I  V   E   + 
Sbjct: 53  LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK DLE +  +V+ ++    
Sbjct: 113 LVGNKVDLE-SEREVSSSEGRAL 134

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N+ SF  ++ +  +I      ++  + 
Sbjct: 71  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK DL   T  V        
Sbjct: 131 LVGNKCDLP--TRTVDTKQAHEL 151

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + DT G E  +++   Y +  E  + VF+++N  SF  +  +  +I      E+  + 
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK DL   +  V     ++ 
Sbjct: 114 LVGNKCDLP--SRTVDTKQAQDL 134

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 67.9 bits (167), Expect = 4e-15
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           +++ DT G E+  ++   Y K  +   LV+S+   ++F+ L     +I  V   E+  + 
Sbjct: 53  LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK DLE     V +   +N 
Sbjct: 113 LVGNKCDLEDER-VVGKEQGQNL 134

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 68.8 bits (169), Expect = 4e-15
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + L DT G +  + +  S+       +LV+S+ +  SF V+     ++          + 
Sbjct: 74  LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133

Query: 59  LCGNKSDLEGTTPQVTEADMENF 81
           L GNK+DL     +V   + +  
Sbjct: 134 LVGNKADLS-PEREVQAVEGKKL 155

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           +QL DT G +  +    +Y       ILV+S+ +  SF V+     ++  +       I 
Sbjct: 56  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115

Query: 59  LCGNKSDLE 67
           L GNK DL 
Sbjct: 116 LVGNKKDLH 124

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 66.8 bits (164), Expect = 1e-14
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 1   MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKI 57
           + ++D          +     +  +A ++VFS+ +  SF  + + LL +       +  +
Sbjct: 53  LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112

Query: 58  FLCGNKSDLEGTTPQVTEADMENF 81
            L GNKSDL  +  +V+  +  + 
Sbjct: 113 ILVGNKSDLARSR-EVSLEEGRHL 135

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 1   MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKI 57
           + ++D          +     +  +A ++VFS+ +  SF  + + LL +       +  +
Sbjct: 74  LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 133

Query: 58  FLCGNKSDLEGTTPQVTEADMENF 81
            L GNKSDL  +  +V+  +  + 
Sbjct: 134 ILVGNKSDLARSR-EVSLEEGRHL 156

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
           +Q+ DT G  +  ++         A ILVFS+ +  S   L    + +++I    E+  +
Sbjct: 58  LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117

Query: 58  FLCGNKSDLEGTTPQVTEADMENF 81
            L GNK D      +V   + +  
Sbjct: 118 MLVGNKCDET--QREVDTREAQAV 139

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + +W+  G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I 
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 59  LCGNKSDLE 67
           L GNKSDL 
Sbjct: 119 LVGNKSDLV 127

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           + +W+  G      +     +  +A ++V+S+ + ASF   S+  +++      E+  I 
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 59  LCGNKSDLE 67
           L GNKSDL 
Sbjct: 150 LVGNKSDLV 158

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 1   MQLWDTGGMERVASITS--SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAK 56
           + + DT   E++    S  S  +   A ++V+S+ +  SF   S+  +++     A++  
Sbjct: 54  LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113

Query: 57  IFLCGNKSDLE 67
           I L GNK+DL 
Sbjct: 114 IILVGNKADLA 124

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 65.4 bits (159), Expect = 3e-13
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
              WD GG E + +    +   +   +L+    ++ +       L  I  Y   + + + 
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKYGGKSPVIVV 156

Query: 61  GNKSDLEGTTPQVTEADMENF 81
            NK D    +  + +  +   
Sbjct: 157 MNKIDEN-PSYNIEQKKINER 176

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           + + D GG   +      +  + +A + VFSL++  SF  +  + L + ++       + 
Sbjct: 69  LLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV 123

Query: 59  LCGNKSDLEGTTP-QVTEADMENF 81
           L G +  +    P  + ++     
Sbjct: 124 LVGTQDAISAANPRVIDDSRARKL 147

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
           M++ DT G E        + ++ E  +LV+ + +  SF  +      +  +   +N  + 
Sbjct: 78  MEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136

Query: 59  LCGNKSDLE 67
           L GNK+DL+
Sbjct: 137 LVGNKADLD 145

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G     ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L
Sbjct: 57  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116

Query: 60  CGNKSDL 66
            G KSDL
Sbjct: 117 VGCKSDL 123

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y  ++  +L F+++N  SF  + ++   EI  Y + AK  L
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132

Query: 60  CGNKSDL--EGTTPQVTEAD 77
            G K DL  +G+   VT+ +
Sbjct: 133 VGLKVDLRKDGSDD-VTKQE 151

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   + +++ FSL + ASF +V ++   E+  +  N  I L
Sbjct: 55  LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114

Query: 60  CGNKSDL 66
            G K DL
Sbjct: 115 VGTKLDL 121

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S   +  +   E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134

Query: 60  CGNKSDL 66
            GNK DL
Sbjct: 135 VGNKKDL 141

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G     ++    Y  ++A +L F +    +    L +   EI+ Y  + ++ L
Sbjct: 77  LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136

Query: 60  CGNKSDL 66
            G K+DL
Sbjct: 137 IGCKTDL 143

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 2   QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
           ++WDT G ER AS+   YY+ A+AA++V+ +    SF      + E+   A ++  I L 
Sbjct: 55  EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114

Query: 61  GNKSDLEGTTP--QVTEADMENF 81
           GNK D        +V   + E  
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKL 137

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y+ A+  IL FSL + AS+  V  + + E+  YA    I L
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117

Query: 60  CGNKSDL 66
            G K DL
Sbjct: 118 VGTKLDL 124

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FSL + ASF  V ++   E+  +  N  I L
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139

Query: 60  CGNKSDL 66
            G K DL
Sbjct: 140 VGTKLDL 146

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
           +++ DT  ++   +    Y  +A A ++V+S+D+  SF   S +L  +  +A+  +    
Sbjct: 71  LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129

Query: 57  IFLCGNKSDLE 67
             L GNK D+ 
Sbjct: 130 ALLLGNKLDMA 140

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E    +    Y   +  ++ FS+D+  S   +  + + E+  +  N  I L
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134

Query: 60  CGNKSDL 66
             NK DL
Sbjct: 135 VANKKDL 141

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 60.2 bits (146), Expect = 6e-12
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 18/134 (13%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + L+DT G E    +    Y   +  ++ FS+ N ASF  V  + + E+  YA N    L
Sbjct: 68  LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127

Query: 60  CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQE-ACDKFEQM 118
            G + DL      +                   ++ +  +   + +++ +E     + + 
Sbjct: 128 IGTQIDLRDDPKTLARL------------NDMKEKPICVE---QGQKLAKEIGACCYVEC 172

Query: 119 SDKAKEELND-FKE 131
           S   ++ L   F E
Sbjct: 173 SALTQKGLKTVFDE 186

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           + +WDT G +    +   +Y  A   +L F + +  SF ++ ++   E+  + +   I +
Sbjct: 84  LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143

Query: 60  CGNKSDLE 67
            G K+DL 
Sbjct: 144 VGCKTDLR 151

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G     ++    Y  ++A ++ F +    +   VL +   EI  +  N K+ L
Sbjct: 78  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137

Query: 60  CGNKSDL 66
            G KSDL
Sbjct: 138 VGCKSDL 144

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           +QL DT G +    +    Y   +  +L FS+ + +SF  V  + + EI  +   A I L
Sbjct: 70  LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129

Query: 60  CGNKSDLE 67
            G +SDL 
Sbjct: 130 VGTQSDLR 137

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G E  + +    Y+ A+  +L FSL + AS+  VL + + E+  +A N  I L
Sbjct: 59  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL 118

Query: 60  CGNKSDL 66
            G K DL
Sbjct: 119 VGTKLDL 125

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
           + + +  G          +  +A+A I VFSL++  SF  +S+   ++ +     +    
Sbjct: 56  VLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110

Query: 57  --IFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
             +    ++     +   V +A      +      +
Sbjct: 111 LALVGTQDRISAS-SPRVVGDARARALXADMKRCSY 145

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366

 Score = 52.4 bits (125), Expect = 9e-09
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
                  Q +Q    +   MS   + E+N F   R+  +   +    E +++  E+    
Sbjct: 296 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 355

Query: 159 LKKCLAELKT 168
           L++ L+    
Sbjct: 356 LRQALSRFPV 365

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
           + LWDT G+E    +    Y   +  ++ FSL + ASFH V ++   E+  +  N  I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264

Query: 60  CGNKSDL 66
            G K DL
Sbjct: 265 VGTKLDL 271

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 22/70 (31%)

Query: 99  QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
            E    +        +   +    + E+N F +RR   FK  +      +I   +     
Sbjct: 316 DEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQ 375

Query: 159 LKKCLAELKT 168
           L+K L     
Sbjct: 376 LEKTLRMYDN 385

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVF------SLDNAASFHVLSQHLLEIVTYAEN 54
             L+   G     +      +  +  + V          NA S   + ++L E     ++
Sbjct: 76  FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135

Query: 55  AKIFLCGNKSDLEGTTP--QVTEA 76
             I +  NK DL    P   V   
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAV 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.9
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.89
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.89
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.89
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.89
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.89
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.89
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.88
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.88
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.88
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.88
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.88
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.88
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.88
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.88
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.88
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.88
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.88
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.88
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.88
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.88
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.88
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.88
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.87
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.87
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.87
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.87
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.87
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.87
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.87
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.87
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.87
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.87
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.86
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.86
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.86
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.85
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.85
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.85
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.84
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.84
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.84
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.83
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.83
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.83
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.72
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.82
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.82
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.82
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.82
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.8
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.8
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.78
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.77
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.77
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.76
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.73
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.71
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.71
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.7
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.69
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.68
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.65
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.64
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.62
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.61
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.61
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.59
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.57
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.54
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.52
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.51
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.49
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.49
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.48
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.48
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.48
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.48
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.46
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.45
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.45
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.45
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.43
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.43
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.42
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.4
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.4
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.39
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.38
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.38
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.37
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.36
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.35
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.34
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.32
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.31
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.31
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.31
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.3
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.3
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.29
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.29
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.28
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.27
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.26
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.24
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.24
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.23
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.21
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.19
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.17
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.15
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.13
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.1
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.07
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.03
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.99
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.98
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.97
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.91
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.88
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.87
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.85
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.82
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.81
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.74
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.71
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.7
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.66
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.65
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.33
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.33
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.31
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.29
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.15
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.1
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.95
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.81
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.78
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.69
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.46
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.04
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.7
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.06
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	96.0
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	95.51
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.9
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	93.07
3cwq_A	209	Para family chromosome partitioning protein; alpha	91.7
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.69
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.49
3end_A	307	Light-independent protochlorophyllide reductase ir	90.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	89.83
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	88.35
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	87.39
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	86.41
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	84.22
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	83.05
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	83.03
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	83.01
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	82.96
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	82.92
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	82.15
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	80.35

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.96  E-value=3.3e-29  Score=190.50  Aligned_cols=103  Identities=29%  Similarity=0.416  Sum_probs=97.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||+||++|..+++.||++++++++|||+++++||+.+..|+..+.... +++|+||||||+|+.+ .|.|+.+++.
T Consensus        64 l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~  142 (216)
T 4dkx_A           64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGE  142 (216)
T ss_dssp             EEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHh
Confidence            5799999999999999999999999999999999999999999999998776 7899999999999998 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ++|++++++ |++|||++|.||+++|
T Consensus       143 ~~a~~~~~~-~~e~SAktg~nV~e~F  167 (216)
T 4dkx_A          143 RKAKELNVM-FIETSAKAGYNVKQLF  167 (216)
T ss_dssp             HHHHHHTCE-EEEEBTTTTBSHHHHH
T ss_pred             hHHHHhCCe-eEEEeCCCCcCHHHHH
Confidence            999999985 7899999999999873

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.3e-23  Score=152.32  Aligned_cols=102  Identities=28%  Similarity=0.455  Sum_probs=81.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~  137 (183)
T 2fu5_C           59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGE  137 (183)
T ss_dssp             EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHH
T ss_pred             EEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998875 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.+++ .|+++||++|.||+++
T Consensus       138 ~~~~~~~~-~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C          138 KLALDYGI-KFMETSAKANINVENA  161 (183)
T ss_dssp             HHHHHHTC-EEEECCC---CCHHHH
T ss_pred             HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999998 4778999999999976

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=156.28  Aligned_cols=103  Identities=32%  Similarity=0.488  Sum_probs=96.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~  158 (201)
T 2hup_A           80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQ  158 (201)
T ss_dssp             EEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++..++..|+++||+++.||+++
T Consensus       159 ~~~~~~~~~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          159 SLAEHYDILCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             HHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             HHHHHcCCCEEEEEeCCCCCCHHHH
Confidence            9999999867889999999999976

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.90  E-value=1.5e-23  Score=158.14  Aligned_cols=104  Identities=17%  Similarity=0.344  Sum_probs=96.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||+. +..|+..+....+++|++|||||+|+.++          
T Consensus        77 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  156 (214)
T 3q3j_B           77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQ  156 (214)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHT
T ss_pred             EEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhccc
Confidence            4799999999999999999999999999999999999999 68999999988889999999999999752          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~  104 (170)
                       .+.++.+++..+++.+++..|+++||++|.| |+++
T Consensus       157 ~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~l  193 (214)
T 3q3j_B          157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI  193 (214)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred             ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHH
Confidence             3789999999999999997788999999998 9976

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.90  E-value=4.3e-23  Score=152.58  Aligned_cols=104  Identities=25%  Similarity=0.417  Sum_probs=96.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+ ..|+..+....+++|++|||||+|+.++ .+.++.+++
T Consensus        73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  152 (194)
T 3reg_A           73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEG  152 (194)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHH
T ss_pred             EEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHH
Confidence            47999999999999999999999999999999999999997 7899998887789999999999999752 478999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++.|+++||++|.||+++
T Consensus       153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          153 DDLCQKLGCVAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             HHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred             HHHHHhcCCCEEEEeecCCCCCHHHH
Confidence            99999999987889999999999976

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.1e-23  Score=151.62  Aligned_cols=104  Identities=19%  Similarity=0.323  Sum_probs=95.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||+++|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.++          
T Consensus        68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  147 (194)
T 2atx_A           68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDM  147 (194)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred             EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccc
Confidence            479999999999999999999999999999999999999997 899999888789999999999999762          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++.++++.+++..|+++||++|.||+++
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  183 (194)
T 2atx_A          148 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV  183 (194)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred             cCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHH
Confidence             25789999999999999867889999999999976

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.90  E-value=3.9e-23  Score=151.79  Aligned_cols=104  Identities=20%  Similarity=0.347  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+ ..|+..+....+++|++|||||+|+.++          
T Consensus        57 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  136 (184)
T 1m7b_A           57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH  136 (184)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhc
Confidence            47999999999999999999999999999999999999999 7899999887789999999999999741          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVV-EPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~-~~~~v~~~  104 (170)
                       .+.++.+++.++++.++...|+++||+ ++.||+++
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l  173 (184)
T 1m7b_A          137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI  173 (184)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHH
Confidence             267999999999999997678899999 68999976

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.89  E-value=3.4e-23  Score=152.43  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD------NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t------~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~   74 (170)
                      ++||||||++.|..+++.+++++|++|+|||++      +.++|+.+..|+.++....+++|++|||||+|+.+   .++
T Consensus        76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~---~~~  152 (198)
T 3t1o_A           76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD---ALP  152 (198)
T ss_dssp             EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT---CCC
T ss_pred             EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc---ccC
Confidence            479999999999999999999999999999999      66888899999988854458999999999999976   589


Q ss_pred             HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++.+++..|+++||++|.||+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  182 (198)
T 3t1o_A          153 VEMVRAVVDPEGKFPVLEAVATEGKGVFET  182 (198)
T ss_dssp             HHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence            999999999999856789999999999976

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=1.3e-22  Score=147.92  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=93.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|++|||||+|+.+ .+.++.+++
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~  134 (181)
T 3t5g_A           56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEG  134 (181)
T ss_dssp             EEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHH
T ss_pred             EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHH
Confidence            4799999999999999999999999999999999999999999999987775  5899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |+++||++|.||++.
T Consensus       135 ~~~~~~~~~~-~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A          135 KALAESWNAA-FLESSAKENQTAVDV  159 (181)
T ss_dssp             HHHHHHTTCE-EEECCTTSHHHHHHH
T ss_pred             HHHHHHhCCc-EEEEecCCCCCHHHH
Confidence            9999999985 778999999999976

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.89  E-value=1.2e-22  Score=145.86  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .+.++.+++
T Consensus        51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~  129 (166)
T 3q72_A           51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEG  129 (166)
T ss_dssp             EEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHH
T ss_pred             EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHH
Confidence            4799999999999999999999999999999999999999999999988764  6899999999999988 789999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..++...++ .|+++||++|.|+++.
T Consensus       130 ~~~~~~~~~-~~~~~Sa~~~~gi~~l  154 (166)
T 3q72_A          130 RACAVVFDC-KFIETSAALHHNVQAL  154 (166)
T ss_dssp             HHHHHHTTC-EEEECBGGGTBSHHHH
T ss_pred             HHHHHHhCC-cEEEeccCCCCCHHHH
Confidence            999999997 5778999999999976

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.89  E-value=1.3e-22  Score=149.74  Aligned_cols=102  Identities=35%  Similarity=0.502  Sum_probs=94.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        72 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~  150 (191)
T 2a5j_A           72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGE  150 (191)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998775 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.+++ .|+++||+++.||+++
T Consensus       151 ~~~~~~~~-~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A          151 AFAREHGL-IFMETSAKTACNVEEA  174 (191)
T ss_dssp             HHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999998 5778999999999976

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=151.46  Aligned_cols=102  Identities=19%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +++|||+|++.+.. ++..|++++|++|+|||++++.||+.+..|+..+....  .++|++|||||+|+.+ .+.++.++
T Consensus        74 l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~  152 (195)
T 3cbq_A           74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEE  152 (195)
T ss_dssp             EEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHH
T ss_pred             EEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHH
Confidence            46899999998865 88999999999999999999999999999999988765  5899999999999987 78899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..+++.+++ .|+++||+++.||+++
T Consensus       153 ~~~~a~~~~~-~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A          153 GRHLAGTLSC-KHIETSAALHHNTREL  178 (195)
T ss_dssp             HHHHHHHTTC-EEEEEBTTTTBSHHHH
T ss_pred             HHHHHHHhCC-EEEEEcCCCCCCHHHH
Confidence            9999999987 5779999999999976

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.8e-22  Score=145.61  Aligned_cols=102  Identities=30%  Similarity=0.435  Sum_probs=95.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.||||||++.+..++..+++++|++++|||++++.||..+..|+..+....+++|+++||||+|+.+ .+.++.+++..
T Consensus        60 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~  138 (181)
T 3tw8_B           60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE-RKVVETEDAYK  138 (181)
T ss_dssp             EEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG-GCCSCHHHHHH
T ss_pred             EEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch-hcccCHHHHHH
Confidence            47999999999999999999999999999999999999999999999988888999999999999988 78899999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++ |+++||++|.|+++.
T Consensus       139 ~~~~~~~~-~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B          139 FAGQMGIQ-LFETSAKENVNVEEM  161 (181)
T ss_dssp             HHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             HHHHcCCe-EEEEECCCCCCHHHH
Confidence            99999985 668999999999976

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=150.57  Aligned_cols=104  Identities=23%  Similarity=0.328  Sum_probs=95.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+..+          
T Consensus        70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  149 (201)
T 2q3h_A           70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKC  149 (201)
T ss_dssp             EEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhccc
Confidence            469999999999999999999999999999999999999997 799999888789999999999999652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..+++.+++..|+++||++|.||+++
T Consensus       150 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  185 (201)
T 2q3h_A          150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV  185 (201)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred             ccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence             36789999999999999877889999999999976

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=148.55  Aligned_cols=102  Identities=35%  Similarity=0.530  Sum_probs=95.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        67 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~  145 (196)
T 3tkl_A           67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAK  145 (196)
T ss_dssp             EEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred             EEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999988 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++..++++ |+++||++|.||+++
T Consensus       146 ~~~~~~~~~-~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A          146 EFADSLGIP-FLETSAKNATNVEQS  169 (196)
T ss_dssp             HHHHHTTCC-EEEECTTTCTTHHHH
T ss_pred             HHHHHcCCc-EEEEeCCCCCCHHHH
Confidence            999999985 678999999999987

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=9.9e-23  Score=152.56  Aligned_cols=102  Identities=35%  Similarity=0.543  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus        77 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~  155 (201)
T 2ew1_A           77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAE  155 (201)
T ss_dssp             EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+++ |+++||++|.||++.
T Consensus       156 ~~~~~~~~~-~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          156 EFSEAQDMY-YLETSAKESDNVEKL  179 (201)
T ss_dssp             HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999999875 778999999999976

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.89  E-value=1.2e-22  Score=152.43  Aligned_cols=104  Identities=20%  Similarity=0.347  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||+.+ ..|+..+....+++|++|||||+|+.++          
T Consensus        78 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  157 (205)
T 1gwn_A           78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH  157 (205)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhccc
Confidence            47999999999999999999999999999999999999999 7899999887789999999999999741          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVV-EPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~-~~~~v~~~  104 (170)
                       .+.|+.+++..+++.++...|+++||+ ++.||+++
T Consensus       158 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~l  194 (205)
T 1gwn_A          158 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI  194 (205)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHH
Confidence             367999999999999987678899999 68999976

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.89  E-value=3.5e-22  Score=148.53  Aligned_cols=102  Identities=30%  Similarity=0.527  Sum_probs=95.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  137 (203)
T 1zbd_A           59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGR  137 (203)
T ss_dssp             EEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHH
T ss_pred             EEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.+++ .|+++||++|.||++.
T Consensus       138 ~~~~~~~~-~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A          138 QLADHLGF-EFFEASAKDNINVKQT  161 (203)
T ss_dssp             HHHHHHTC-EEEECBTTTTBSSHHH
T ss_pred             HHHHHCCC-eEEEEECCCCCCHHHH
Confidence            99999998 5778999999999987

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.89  E-value=1.6e-22  Score=147.83  Aligned_cols=102  Identities=21%  Similarity=0.335  Sum_probs=94.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  .++|+++||||+|+.+ .+.++.+++
T Consensus        68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~  146 (183)
T 3kkq_A           68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQG  146 (183)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHH
Confidence            3679999999999999999999999999999999999999999999987654  7899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVV-EPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~-~~~~v~~~  104 (170)
                      ..+++.++++ |+++||+ ++.||++.
T Consensus       147 ~~~~~~~~~~-~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A          147 KEMATKYNIP-YIETSAKDPPLNVDKT  172 (183)
T ss_dssp             HHHHHHHTCC-EEEEBCSSSCBSHHHH
T ss_pred             HHHHHHhCCe-EEEeccCCCCCCHHHH
Confidence            9999999976 7789999 99999976

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=5.7e-23  Score=151.72  Aligned_cols=102  Identities=32%  Similarity=0.505  Sum_probs=95.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        74 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  152 (191)
T 3dz8_A           74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQ  152 (191)
T ss_dssp             EEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998877 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.+++ .|+++||++|.||+++
T Consensus       153 ~~~~~~~~-~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A          153 LLAEQLGF-DFFEASAKENISVRQA  176 (191)
T ss_dssp             HHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHcCC-eEEEEECCCCCCHHHH
Confidence            99999998 5779999999999976

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.89  E-value=6.3e-23  Score=149.49  Aligned_cols=103  Identities=28%  Similarity=0.382  Sum_probs=93.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-------   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-------   72 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+ .+.       
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  136 (182)
T 3bwd_D           58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD-DKQFFIDHPG  136 (182)
T ss_dssp             CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT-CHHHHHHC--
T ss_pred             EEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc-Cccccccccc
Confidence            569999999999999999999999999999999999999997 79999988778899999999999876 333       


Q ss_pred             ---CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 ---VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 ---v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                         ++.+++.++++.+++..|+++||++|.||++.
T Consensus       137 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (182)
T 3bwd_D          137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV  171 (182)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHH
Confidence               68899999999999877889999999999976

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.89  E-value=1.4e-22  Score=145.96  Aligned_cols=102  Identities=19%  Similarity=0.272  Sum_probs=88.2

Q ss_pred             CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +++|||+|++.+.. ++..+++++|++++|||+++++||+.+..|+..+....  +++|+++||||+|+.+ .+.++.++
T Consensus        53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~  131 (169)
T 3q85_A           53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEE  131 (169)
T ss_dssp             EEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred             EEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHH
Confidence            46999999999876 88899999999999999999999999999999998876  4899999999999987 78999999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..+++.+++ .|+++||++|.|++++
T Consensus       132 ~~~~~~~~~~-~~~~~Sa~~~~~v~~l  157 (169)
T 3q85_A          132 GRHLAGTLSC-KHIETSAALHHNTREL  157 (169)
T ss_dssp             HHHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHcCC-cEEEecCccCCCHHHH
Confidence            9999999998 5779999999999976

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.88  E-value=3.9e-23  Score=154.82  Aligned_cols=103  Identities=26%  Similarity=0.381  Sum_probs=92.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC--------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP--------   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--------   71 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+ .+        
T Consensus        59 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  137 (212)
T 2j0v_A           59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD-DKGYLADHTN  137 (212)
T ss_dssp             EEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT-CHHHHHTCSS
T ss_pred             EEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh-CccccccccC
Confidence            479999999999999999999999999999999999999997 89999988778999999999999976 33        


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++.+++..+++.+++..|+++||++|.||+++
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  170 (212)
T 2j0v_A          138 VITSTQGEELRKQIGAAAYIECSSKTQQNVKAV  170 (212)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHH
Confidence            358899999999999877899999999999976

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.88  E-value=2.7e-22  Score=147.70  Aligned_cols=102  Identities=32%  Similarity=0.514  Sum_probs=94.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        73 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  151 (189)
T 2gf9_A           73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGR  151 (189)
T ss_dssp             EEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.+++ .|+++||++|.|+++.
T Consensus       152 ~~~~~~~~-~~~~~Sa~~g~gi~~l  175 (189)
T 2gf9_A          152 RLADDLGF-EFFEASAKENINVKQV  175 (189)
T ss_dssp             HHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHcCC-eEEEEECCCCCCHHHH
Confidence            99999998 5778999999999976

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=149.47  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=89.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||+|++.|..+ ..+++++|++++|||++++.||+.+..|+..+....    +++|++|||||+|+.+ .+.++.+
T Consensus        71 l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~  148 (187)
T 3c5c_A           71 LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKA  148 (187)
T ss_dssp             EEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHH
T ss_pred             EEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHH
Confidence            478999999999876 679999999999999999999999999999988764    6899999999999987 7889999


Q ss_pred             HHHHHHHhcCCCeEEEccc-CCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEV-VEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa-~~~~~v~~~  104 (170)
                      ++.++++.+++ .|+++|| ++|.||+++
T Consensus       149 ~~~~~~~~~~~-~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A          149 EGVALAGRFGC-LFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             HHHHHHHHHTC-EEEECCSSSCSHHHHHH
T ss_pred             HHHHHHHHcCC-cEEEEeecCccccHHHH
Confidence            99999999998 5779999 899999976

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.88  E-value=6.5e-22  Score=147.50  Aligned_cols=102  Identities=32%  Similarity=0.509  Sum_probs=94.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  137 (206)
T 2bcg_Y           59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAK  137 (206)
T ss_dssp             EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998776 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+++ |+++||++|.||++.
T Consensus       138 ~~~~~~~~~-~~~~Sa~~g~gi~~l  161 (206)
T 2bcg_Y          138 EFADANKMP-FLETSALDSTNVEDA  161 (206)
T ss_dssp             HHHHHTTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999985 678999999999987

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.88  E-value=2.8e-22  Score=146.66  Aligned_cols=102  Identities=34%  Similarity=0.580  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus        61 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  139 (186)
T 2bme_A           61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEAS  139 (186)
T ss_dssp             EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988775 7899999999999977 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||++|.||++.
T Consensus       140 ~~~~~~~~-~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A          140 RFAQENEL-MFLETSALTGENVEEA  163 (186)
T ss_dssp             HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEecCCCCCCHHHH
Confidence            99999987 5778999999999976

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.88  E-value=2.5e-22  Score=148.06  Aligned_cols=98  Identities=14%  Similarity=0.330  Sum_probs=88.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC--CCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE--GTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~--~~~~~v~~~   76 (170)
                      |+||||+|++.|.     +++++|++++|||++++.||+.+..|+..+....  +++|++|||||+|+.  . .+.++.+
T Consensus        69 l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~v~~~  142 (184)
T 3ihw_A           69 LLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN-PRVIDDS  142 (184)
T ss_dssp             EEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB-CCCSCHH
T ss_pred             EEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccccCHH
Confidence            4689999999876     8899999999999999999999999999998875  689999999999994  4 6789999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++.++++.++...|+++||++|.||+++
T Consensus       143 ~~~~~~~~~~~~~~~e~Sa~~~~gv~~l  170 (184)
T 3ihw_A          143 RARKLSTDLKRCTYYETCATYGLNVERV  170 (184)
T ss_dssp             HHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred             HHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence            9999999998667889999999999976

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.88  E-value=1.9e-22  Score=144.70  Aligned_cols=103  Identities=24%  Similarity=0.354  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .+.++.+++
T Consensus        53 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  131 (167)
T 1c1y_A           53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQG  131 (167)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHH
Confidence            4789999999999999999999999999999999999999999999887764  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++...|+++||++|.|+++.
T Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A          132 QNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             HHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             HHHHHHccCCcEEEecCCCCCCHHHH
Confidence            99999985556889999999999976

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.88  E-value=3.5e-22  Score=148.82  Aligned_cols=103  Identities=24%  Similarity=0.385  Sum_probs=95.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      ++||||||++.|..++..+++++|++++|||++++.+|+.+ ..|+..+....+++|+++||||+|+.. .         
T Consensus        75 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  153 (201)
T 2gco_A           75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ-DEHTRRELAK  153 (201)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT-CHHHHHHHHT
T ss_pred             EEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc-Cccchhhhcc
Confidence            47999999999999999999999999999999999999999 689988888778999999999999976 3         


Q ss_pred             ---CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 ---PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ---~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                         +.++.+++..+++..+...|+++||++|.||++.
T Consensus       154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  190 (201)
T 2gco_A          154 MKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV  190 (201)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             cccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence               6789999999999999877889999999999976

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.88  E-value=8.8e-22  Score=143.26  Aligned_cols=102  Identities=33%  Similarity=0.490  Sum_probs=94.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus        63 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~  141 (181)
T 2efe_B           63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQ  141 (181)
T ss_dssp             EEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred             EEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.|+++.
T Consensus       142 ~~~~~~~~~-~~~~Sa~~g~gi~~l  165 (181)
T 2efe_B          142 TYAQENGLF-FMETSAKTATNVKEI  165 (181)
T ss_dssp             HHHHHTTCE-EEECCSSSCTTHHHH
T ss_pred             HHHHHcCCE-EEEEECCCCCCHHHH
Confidence            999999884 778999999999976

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.88  E-value=2.3e-22  Score=146.82  Aligned_cols=104  Identities=21%  Similarity=0.320  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+.          
T Consensus        55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (186)
T 1mh1_A           55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  134 (186)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccc
Confidence            469999999999999999999999999999999999999997 799999887789999999999998652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..+++.+++..|+++||++|.|+++.
T Consensus       135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  170 (186)
T 1mh1_A          135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  170 (186)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHH
Confidence             26789999999999999867889999999999976

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=151.79  Aligned_cols=104  Identities=18%  Similarity=0.311  Sum_probs=80.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|++|||||+|+....         
T Consensus        84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  163 (214)
T 2j1l_A           84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRN  163 (214)
T ss_dssp             EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred             EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccc
Confidence            479999999999999999999999999999999999999996 7999998877889999999999997621         


Q ss_pred             --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                        +.++.+++..+++.+++..|+++||++|.||+++
T Consensus       164 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el  199 (214)
T 2j1l_A          164 GLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAV  199 (214)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             ccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence              4789999999999999877889999999999976

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.88  E-value=3.6e-22  Score=148.63  Aligned_cols=102  Identities=21%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  .++|++|||||+|+.. .+.++..++
T Consensus        74 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~  152 (201)
T 3oes_A           74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEG  152 (201)
T ss_dssp             EEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHH
Confidence            4799999999999999999999999999999999999999999999988764  6899999999999987 789999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.+++ .|+++||++|.||+++
T Consensus       153 ~~~~~~~~~-~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A          153 KKLAESWGA-TFMESSARENQLTQGI  177 (201)
T ss_dssp             HHHHHHHTC-EEEECCTTCHHHHHHH
T ss_pred             HHHHHHhCC-eEEEEeCCCCCCHHHH
Confidence            999999998 5778999999999976

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.88  E-value=6.1e-22  Score=147.11  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC----CCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE----NAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~----~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+....+    ++|++|||||+|+.+..+.++.+
T Consensus        75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~  154 (208)
T 2yc2_C           75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD  154 (208)
T ss_dssp             EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence            47999999999999999999999999999999999999999999999988764    89999999999996423678899


Q ss_pred             HHHHHHHhcCCCeEEEcccCC-cchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVE-PQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~-~~~v~~~  104 (170)
                      ++..+++.+++ .|+++||++ +.||++.
T Consensus       155 ~~~~~~~~~~~-~~~~~Sa~~~~~gi~~l  182 (208)
T 2yc2_C          155 MAQDWATTNTL-DFFDVSANPPGKDADAP  182 (208)
T ss_dssp             HHHHHHHHTTC-EEEECCC-------CHH
T ss_pred             HHHHHHHHcCC-EEEEeccCCCCcCHHHH
Confidence            99999999997 577899999 9999986

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=4.2e-22  Score=144.88  Aligned_cols=102  Identities=33%  Similarity=0.477  Sum_probs=87.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|+++|+||+|+.+ .+.++.+++.
T Consensus        62 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  140 (180)
T 2g6b_A           62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGE  140 (180)
T ss_dssp             EEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999988 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||+++.|+++.
T Consensus       141 ~~~~~~~~~-~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A          141 KLAKEYGLP-FMETSAKTGLNVDLA  164 (180)
T ss_dssp             HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999984 778999999999976

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.88  E-value=5.1e-22  Score=142.64  Aligned_cols=102  Identities=31%  Similarity=0.457  Sum_probs=94.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus        57 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~  135 (170)
T 1r2q_A           57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQ  135 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988775 7899999999999987 7789999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++ .|+++||++|.|+++.
T Consensus       136 ~~~~~~~~-~~~~~Sa~~g~gi~~l  159 (170)
T 1r2q_A          136 SYADDNSL-LFMETSAKTSMNVNEI  159 (170)
T ss_dssp             HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999887 4778999999999976

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.88  E-value=4.1e-22  Score=144.44  Aligned_cols=102  Identities=31%  Similarity=0.522  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  144 (179)
T 1z0f_A           66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAK  144 (179)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998877 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.+++ .|+++||++|.||++.
T Consensus       145 ~~~~~~~~-~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A          145 QFAEENGL-LFLEASAKTGENVEDA  168 (179)
T ss_dssp             HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999987 5778999999999976

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=149.61  Aligned_cols=103  Identities=36%  Similarity=0.561  Sum_probs=94.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus        77 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~  155 (192)
T 2il1_A           77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGE  155 (192)
T ss_dssp             EEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999888776 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+...|+++||++|.||++.
T Consensus       156 ~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          156 KFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             HHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999864456889999999999976

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.88  E-value=7.2e-22  Score=143.67  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=84.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh---C-CCCeEEEEeeCCCCC--CCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY---A-ENAKIFLCGNKSDLE--GTTPQVT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~---~-~~~pvvlvgnK~Dl~--~~~~~v~   74 (170)
                      ++||||+|+++     ..|++++|++|+|||++++.||+.+..|+..+...   . +++|++|||||+|+.  . .+.++
T Consensus        56 l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~~~v~  129 (178)
T 2iwr_A           56 VLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS-PRVVG  129 (178)
T ss_dssp             EEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB-CCCSC
T ss_pred             EEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-cCcCC
Confidence            47899999986     56889999999999999999999999976655443   2 589999999999994  4 67899


Q ss_pred             HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++..+...|+++||++|.||+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  159 (178)
T 2iwr_A          130 DARARALXADMKRCSYYETXATYGLNVDRV  159 (178)
T ss_dssp             HHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred             HHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence            999999999885456889999999999976

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.88  E-value=3.3e-22  Score=145.20  Aligned_cols=102  Identities=23%  Similarity=0.311  Sum_probs=92.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCe-EEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAK-IFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~p-vvlvgnK~Dl~~~~~~v~~~   76 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....   .+.| ++|||||+|+.+ .+.++.+
T Consensus        58 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~  136 (178)
T 2hxs_A           58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPE  136 (178)
T ss_dssp             EEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHH
T ss_pred             EEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHH
Confidence            4799999999999999999999999999999999999999999999887754   2445 899999999987 7889999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..+++.+++ .|+++||++|.||+++
T Consensus       137 ~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A          137 KHLRFCQENGF-SSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             HHHHHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHHHHHcCC-cEEEEeCCCCCCHHHH
Confidence            99999999998 4778999999999976

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.88  E-value=2.3e-22  Score=144.77  Aligned_cols=102  Identities=24%  Similarity=0.440  Sum_probs=87.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+|||||++.+..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus        57 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  135 (170)
T 1z08_A           57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAE  135 (170)
T ss_dssp             EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHH
Confidence            4699999999999999999999999999999999999999999999987765 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+++ |+++||++|.|+++.
T Consensus       136 ~~~~~~~~~-~~~~Sa~~~~gi~~l  159 (170)
T 1z08_A          136 SYAESVGAK-HYHTSAKQNKGIEEL  159 (170)
T ss_dssp             HHHHHTTCE-EEEEBTTTTBSHHHH
T ss_pred             HHHHHcCCe-EEEecCCCCCCHHHH
Confidence            999999974 678999999999976

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.88  E-value=9.1e-22  Score=142.30  Aligned_cols=102  Identities=21%  Similarity=0.239  Sum_probs=86.7

Q ss_pred             CeEEecCCccc--cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMER--VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~--~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      +++|||+|++.  +..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .+.++.+
T Consensus        54 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~  132 (175)
T 2nzj_A           54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVE  132 (175)
T ss_dssp             EEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHH
T ss_pred             EEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHH
Confidence            46999999988  67788899999999999999999999999999999888764  5899999999999987 7889999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++..++..+++ .|+++||++|.||++.
T Consensus       133 ~~~~~~~~~~~-~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A          133 EGRACAVVFDC-KFIETSATLQHNVAEL  159 (175)
T ss_dssp             HHHHHHHHHTS-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHcCC-eEEEEecCCCCCHHHH
Confidence            99999999987 5778999999999976

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.88  E-value=6.8e-22  Score=144.93  Aligned_cols=102  Identities=32%  Similarity=0.552  Sum_probs=94.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.++..+..|+..+....  +++|+++|+||+|+.+ .+.++.+++
T Consensus        72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  150 (195)
T 3bc1_A           72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEA  150 (195)
T ss_dssp             EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence            4799999999999999999999999999999999999999999999998776  6899999999999987 778999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++++ |+++||+++.||++.
T Consensus       151 ~~~~~~~~~~-~~~~Sa~~~~~v~~l  175 (195)
T 3bc1_A          151 RELAEKYGIP-YFETSAANGTNISHA  175 (195)
T ss_dssp             HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHHcCCC-EEEEECCCCCCHHHH
Confidence            9999999985 678999999999976

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=148.45  Aligned_cols=102  Identities=34%  Similarity=0.565  Sum_probs=94.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus        76 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~  154 (200)
T 2o52_A           76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEAS  154 (200)
T ss_dssp             EEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988766 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||++|.||+++
T Consensus       155 ~~~~~~~~-~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          155 RFAQENEL-MFLETSALTGENVEEA  178 (200)
T ss_dssp             HHHHHTTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999987 4778999999999977

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.88  E-value=6.2e-22  Score=142.39  Aligned_cols=101  Identities=33%  Similarity=0.508  Sum_probs=93.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+.  .+.++.+++.
T Consensus        54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~  131 (170)
T 1g16_A           54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGE  131 (170)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHH
T ss_pred             EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 689999999999994  5788899999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.||++.
T Consensus       132 ~~~~~~~~~-~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A          132 ALAKELGIP-FIESSAKNDDNVNEI  155 (170)
T ss_dssp             HHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             HHHHHcCCe-EEEEECCCCCCHHHH
Confidence            999999985 778999999999976

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=5.1e-22  Score=150.19  Aligned_cols=102  Identities=22%  Similarity=0.247  Sum_probs=91.4

Q ss_pred             CeEEecCCccc-cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~-~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.+|||+|++. +..+++.|++.+|++|+|||++++.||+.+..|+..+....  +++|+||||||+|+.. .+.++.++
T Consensus        89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e  167 (211)
T 2g3y_A           89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSE  167 (211)
T ss_dssp             EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHH
T ss_pred             EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHH
Confidence            36899999987 56788899999999999999999999999999998887643  6899999999999987 78899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..+++ .|+++||++|.||+++
T Consensus       168 ~~~~a~~~~~-~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          168 GRACAVVFDC-KFIETSAAVQHNVKEL  193 (211)
T ss_dssp             HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            9999999987 5779999999999976

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.87  E-value=1.1e-21  Score=141.07  Aligned_cols=102  Identities=25%  Similarity=0.464  Sum_probs=94.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.+..+++.
T Consensus        57 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~  135 (170)
T 1z0j_A           57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAK  135 (170)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHH
Confidence            4699999999999999999999999999999999999999999999998875 7899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||+++.|+++.
T Consensus       136 ~~~~~~~~-~~~~~Sa~~~~~i~~l  159 (170)
T 1z0j_A          136 DYADSIHA-IFVETSAKNAININEL  159 (170)
T ss_dssp             HHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCcCHHHH
Confidence            99999987 5778999999999976

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.87  E-value=6.4e-22  Score=143.77  Aligned_cols=104  Identities=28%  Similarity=0.396  Sum_probs=82.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +++|||||++.|..++..+++++|++|+|||++++.||+.+..|+..+....     +++|+++||||+|+....+.++.
T Consensus        60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~  139 (182)
T 1ky3_A           60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE  139 (182)
T ss_dssp             EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred             EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence            4799999999999999999999999999999999999999999999887654     68999999999999653567899


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+++..+...|+++||++|.||++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (182)
T 1ky3_A          140 KSAQELAKSLGDIPLFLTSAKNAINVDTA  168 (182)
T ss_dssp             HHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred             HHHHHHHHhcCCCeEEEEecCCCCCHHHH
Confidence            99999998655556889999999999976

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.87  E-value=7.3e-22  Score=145.68  Aligned_cols=102  Identities=33%  Similarity=0.518  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .++|++|||||+|+.+ .+.+..+++.
T Consensus        76 ~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  154 (193)
T 2oil_A           76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEAR  154 (193)
T ss_dssp             EEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988775 6899999999999987 6788999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++ .|+++||++|.||++.
T Consensus       155 ~~~~~~~~-~~~~~Sa~~~~gi~~l  178 (193)
T 2oil_A          155 MFAENNGL-LFLETSALDSTNVELA  178 (193)
T ss_dssp             HHHHHTTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999988 5778999999999976

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.87  E-value=5.9e-22  Score=142.21  Aligned_cols=102  Identities=32%  Similarity=0.452  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....++.|+++|+||+|+.+ .+.++.+++..
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~  134 (168)
T 1z2a_A           56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD-DSCIKNEEAEG  134 (168)
T ss_dssp             EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG-GCSSCHHHHHH
T ss_pred             EEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc-ccccCHHHHHH
Confidence            47999999999999999999999999999999999999999999999887768899999999999987 77899999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.+++ .|+++||+++.|+++.
T Consensus       135 ~~~~~~~-~~~~~Sa~~~~~i~~l  157 (168)
T 1z2a_A          135 LAKRLKL-RFYRTSVKEDLNVSEV  157 (168)
T ss_dssp             HHHHHTC-EEEECBTTTTBSSHHH
T ss_pred             HHHHcCC-eEEEEecCCCCCHHHH
Confidence            9999998 5778999999999976

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=145.57  Aligned_cols=102  Identities=27%  Similarity=0.400  Sum_probs=94.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.||||||++.|..++..+++++|++++|||++++.||..+..|+..+....  .++|++|||||+|+.+ .+.++.+++
T Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  142 (206)
T 2bov_A           64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA  142 (206)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHH
Confidence            4699999999999999999999999999999999999999999999998876  4899999999999987 778999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.+++ .|+++||++|.||++.
T Consensus       143 ~~~~~~~~~-~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A          143 KNRAEQWNV-NYVETSAKTRANVDKV  167 (206)
T ss_dssp             HHHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHHHhCC-eEEEEeCCCCCCHHHH
Confidence            999999998 4778999999999987

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-21  Score=140.94  Aligned_cols=103  Identities=27%  Similarity=0.428  Sum_probs=93.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC--CCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT--TPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~--~~~v~~~~   77 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+...  .+.+..++
T Consensus        54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~  133 (170)
T 1ek0_A           54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREE  133 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred             EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHH
Confidence            4799999999999999999999999999999999999999999999998776 78999999999999751  27889999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..+++..++ .|+++||++|.|+++.
T Consensus       134 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A          134 GEKLAEEKGL-LFFETSAKTGENVNDV  159 (170)
T ss_dssp             HHHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            9999999998 5778999999999976

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.5e-22  Score=149.72  Aligned_cols=102  Identities=31%  Similarity=0.493  Sum_probs=91.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        64 ~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~  142 (223)
T 3cpj_B           64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESK  142 (223)
T ss_dssp             EEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHH
T ss_pred             EEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998775 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..++ .|+++||+++.||+++
T Consensus       143 ~~~~~~~~-~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B          143 TFAQENQL-LFTETSALNSENVDKA  166 (223)
T ss_dssp             HHHHHTTC-EEEECCCC-CCCHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999887 5778999999999987

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.87  E-value=7.2e-22  Score=144.48  Aligned_cols=101  Identities=24%  Similarity=0.360  Sum_probs=90.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+  +.+..+++
T Consensus        54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~  131 (189)
T 4dsu_A           54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQA  131 (189)
T ss_dssp             EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHH
Confidence            4689999999999999999999999999999999999999999999988765  6899999999999974  67888999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |+++||++|.|+++.
T Consensus       132 ~~~~~~~~~~-~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A          132 QDLARSYGIP-FIETSAKTRQGVDDA  156 (189)
T ss_dssp             HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            9999999985 678999999999976

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.87  E-value=2.8e-22  Score=149.95  Aligned_cols=104  Identities=21%  Similarity=0.322  Sum_probs=95.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|++|||||+|+.+.          
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  159 (204)
T 4gzl_A           80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  159 (204)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcc
Confidence            469999999999999999999999999999999999999997 899999888789999999999998762          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..+++.+++..|+++||++|.||+++
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  195 (204)
T 4gzl_A          160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  195 (204)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHH
Confidence             13488999999999999988999999999999976

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.87  E-value=5.7e-22  Score=141.81  Aligned_cols=102  Identities=28%  Similarity=0.381  Sum_probs=93.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  ++.|+++|+||+|+.+ .+.++.+++
T Consensus        53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  131 (167)
T 1kao_A           53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEG  131 (167)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHH
Confidence            4699999999999999999999999999999999999999999999988765  5899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |+++||++|.|+++.
T Consensus       132 ~~~~~~~~~~-~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A          132 RALAEEWGCP-FMETSAKSKTMVDEL  156 (167)
T ss_dssp             HHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred             HHHHHHhCCC-EEEecCCCCcCHHHH
Confidence            9999999985 678999999999976

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.2e-21  Score=146.49  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=94.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+ ..|+..+....+++|+++||||+|+...          
T Consensus        75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  154 (207)
T 2fv8_A           75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARM  154 (207)
T ss_dssp             EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHT
T ss_pred             EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhc
Confidence            47999999999999999999999999999999999999999 6899988887789999999999999762          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..++...++..|+++||++|.||++.
T Consensus       155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el  190 (207)
T 2fv8_A          155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV  190 (207)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHH
Confidence             15789999999999999877889999999999976

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=5e-22  Score=142.24  Aligned_cols=102  Identities=27%  Similarity=0.401  Sum_probs=91.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||||++.+..++..+++++|++++|||++++.+|+.+..|+..+....  .++|+++|+||+|+.+ .+.++.+++
T Consensus        54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  132 (168)
T 1u8z_A           54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA  132 (168)
T ss_dssp             EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHH
Confidence            4699999999999999999999999999999999999999999999988776  4899999999999987 778999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.+++ .|+++||++|.|+++.
T Consensus       133 ~~~~~~~~~-~~~~~Sa~~~~gi~~l  157 (168)
T 1u8z_A          133 KNRADQWNV-NYVETSAKTRANVDKV  157 (168)
T ss_dssp             HHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHcCC-eEEEeCCCCCCCHHHH
Confidence            999999997 4778999999999976

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.2e-21  Score=144.74  Aligned_cols=102  Identities=25%  Similarity=0.426  Sum_probs=94.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus        74 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~  152 (192)
T 2fg5_A           74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAK  152 (192)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999998876 6899999999999976 6889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++..++ .|+++||+++.||++.
T Consensus       153 ~~~~~~~~-~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A          153 EYAESIGA-IVVETSAKNAINIEEL  176 (192)
T ss_dssp             HHHHTTTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCcCHHHH
Confidence            99999997 4778999999999976

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.87  E-value=9.6e-22  Score=142.72  Aligned_cols=102  Identities=24%  Similarity=0.413  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||..+..|+..+....  .++|+++||||+|+.+ .+.++.+++
T Consensus        59 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~  137 (181)
T 2fn4_A           59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEA  137 (181)
T ss_dssp             EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence            4689999999999999999999999999999999999999999999885543  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..++...++ .|+++||++|.||++.
T Consensus       138 ~~~~~~~~~-~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A          138 SAFGASHHV-AYFEASAKLRLNVDEA  162 (181)
T ss_dssp             HHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHcCC-eEEEecCCCCCCHHHH
Confidence            999999888 5778999999999976

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.87  E-value=5.1e-22  Score=149.21  Aligned_cols=102  Identities=30%  Similarity=0.484  Sum_probs=93.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....  .++|++||+||+|+.+ .+.++.+++
T Consensus        86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~  164 (217)
T 2f7s_A           86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQA  164 (217)
T ss_dssp             EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHH
Confidence            4799999999999999999999999999999999999999999998877655  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |+++||+++.||++.
T Consensus       165 ~~~~~~~~~~-~~~~Sa~~g~gi~~l  189 (217)
T 2f7s_A          165 RELADKYGIP-YFETSAATGQNVEKA  189 (217)
T ss_dssp             HHHHHHTTCC-EEEEBTTTTBTHHHH
T ss_pred             HHHHHHCCCc-EEEEECCCCCCHHHH
Confidence            9999999985 678999999999986

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.87  E-value=8.4e-23  Score=163.40  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=82.9

Q ss_pred             CeEEecCCcccccc---chhhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC-----
Q psy17235          1 MQLWDTGGMERVAS---ITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT-----   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~---~~~~~~~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~-----   70 (170)
                      |+|||||||++|..   +++.||++++|+|+|||++++  +++..+..|+.++....+++|++|+|||+|+.++.     
T Consensus        48 LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~  127 (331)
T 3r7w_B           48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA  127 (331)
T ss_dssp             EEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH
T ss_pred             EEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhH
Confidence            58999999999964   479999999999999999998  33444444566666666899999999999997621     


Q ss_pred             -CCCCHHHHHHHHHh----cCCCeEEEcccCCcchhhhH
Q psy17235         71 -PQVTEADMENFWSR----RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 -~~v~~~~~~~~a~~----~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       |.|+.++++++|+.    +++ .|++|||++ .||.++
T Consensus       128 ~R~V~~~~~~~la~~~~~~~~i-~f~eTSAkd-~nV~eA  164 (331)
T 3r7w_B          128 QRDIMQRTGEELLELGLDGVQV-SFYLTSIFD-HSIYEA  164 (331)
T ss_dssp             HHHHHHHHHHTTSSSSCSCCCE-EEECCCSSS-SHHHHH
T ss_pred             HHHhhHHHHHHHHhhcccccCc-eEEEeccCC-CcHHHH
Confidence             57889999999986    455 588999998 588877

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.86  E-value=2e-21  Score=144.70  Aligned_cols=101  Identities=16%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..|++++|++++|||+++++||..+..|+..+....  .++|+++||||+|+.+   .++.+++
T Consensus        71 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~  147 (198)
T 1f6b_A           71 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERL  147 (198)
T ss_dssp             EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHH
Confidence            4799999999999999999999999999999999999999999999987653  6899999999999965   6788888


Q ss_pred             HHHHHhc----------------CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR----------------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~----------------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++...                ....|++|||++|.||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l  189 (198)
T 1f6b_A          148 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG  189 (198)
T ss_dssp             HHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred             HHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence            8877643                2236889999999999987

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.86  E-value=1.3e-21  Score=142.67  Aligned_cols=102  Identities=27%  Similarity=0.400  Sum_probs=94.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....  .++|+++|+||+|+.+ .+.++.+++
T Consensus        68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  146 (187)
T 2a9k_A           68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA  146 (187)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHH
Confidence            4799999999999999999999999999999999999999999999988776  4899999999999987 778999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.+++ .|+++||+++.||++.
T Consensus       147 ~~~~~~~~~-~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A          147 KNRAEQWNV-NYVETSAKTRANVDKV  171 (187)
T ss_dssp             HHHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHcCC-eEEEeCCCCCCCHHHH
Confidence            999999998 5778999999999976

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=8.7e-22  Score=146.35  Aligned_cols=102  Identities=31%  Similarity=0.463  Sum_probs=92.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCC------CCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLE------GTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~------~~~~~v   73 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.      . .+.+
T Consensus        79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~-~~~v  157 (199)
T 2p5s_A           79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEG-QKCV  157 (199)
T ss_dssp             EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTT-CCCC
T ss_pred             EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccc-cccc
Confidence            4799999999999999999999999999999999999999999999988776 689999999999996      3 5789


Q ss_pred             CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..+++..++ .|+++||++|.||+++
T Consensus       158 ~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el  187 (199)
T 2p5s_A          158 PGHFGEKLAMTYGA-LFCETSAKDGSNIVEA  187 (199)
T ss_dssp             CHHHHHHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred             CHHHHHHHHHHcCC-eEEEeeCCCCCCHHHH
Confidence            99999999999998 5778999999999976

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.86  E-value=3.3e-21  Score=139.75  Aligned_cols=102  Identities=29%  Similarity=0.531  Sum_probs=91.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....     .++|+++||||+|+.  .+.++.
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~  135 (177)
T 1wms_A           58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVST  135 (177)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCH
T ss_pred             EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCH
Confidence            4799999999999999999999999999999999999999999999987654     578999999999997  367889


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.++++..+...|+++||++|.|+++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A          136 EEAQAWCRDNGDYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             HHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             HHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            99999998555446889999999999976

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.86  E-value=4.5e-21  Score=142.26  Aligned_cols=102  Identities=22%  Similarity=0.242  Sum_probs=88.7

Q ss_pred             CeEEecCCccc-cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~-~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +.+|||+|++. +..+++.|++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.. .+.++.++
T Consensus        58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~  136 (192)
T 2cjw_A           58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSE  136 (192)
T ss_dssp             EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred             EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHH
Confidence            36899999887 56788999999999999999999999999999998887653  5899999999999987 68899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..+++ .|+++||++|.||+++
T Consensus       137 ~~~~a~~~~~-~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A          137 GRAXAVVFDX-KFIETSAAVQHNVKEL  162 (192)
T ss_dssp             HHHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHhCC-ceEEeccccCCCHHHH
Confidence            9999988887 5789999999999987

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.86  E-value=7.1e-21  Score=140.26  Aligned_cols=100  Identities=25%  Similarity=0.385  Sum_probs=91.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..+++++|++++|||++++.+|..+..|+..+....+ .|+++|+||+| .. .+.++.+++..
T Consensus        95 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~-~~~~~~~~~~~  171 (208)
T 3clv_A           95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID-KN-KFQVDILEVQK  171 (208)
T ss_dssp             EEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC--CCSCHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-cc-cccCCHHHHHH
Confidence            47999999999999999999999999999999999999999999999987754 99999999999 44 67899999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++ .|+++||+++.|+++.
T Consensus       172 ~~~~~~~-~~~~~Sa~~~~~i~~l  194 (208)
T 3clv_A          172 YAQDNNL-LFIQTSAKTGTNIKNI  194 (208)
T ss_dssp             HHHHTTC-EEEEECTTTCTTHHHH
T ss_pred             HHHHcCC-cEEEEecCCCCCHHHH
Confidence            9999988 5778999999999976

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.86  E-value=1.6e-21  Score=143.48  Aligned_cols=102  Identities=31%  Similarity=0.476  Sum_probs=93.2

Q ss_pred             CeEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ++||||||++.|. .++..+++++|++|+|||++++.||+.+..|+..+....  .++|++|||||+|+.+ .+.++.++
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~  149 (189)
T 1z06_A           71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDL  149 (189)
T ss_dssp             EEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred             EEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHH
Confidence            4799999999998 899999999999999999999999999999999998875  6899999999999987 78899999


Q ss_pred             HHHHHHhcCCCeEEEcccCCc---chhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEP---QEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~---~~v~~~  104 (170)
                      +..+++.++++ |+++||+++   .||.++
T Consensus       150 ~~~~~~~~~~~-~~~~Sa~~~~~~~~i~~l  178 (189)
T 1z06_A          150 AQKFADTHSMP-LFETSAKNPNDNDHVEAI  178 (189)
T ss_dssp             HHHHHHHTTCC-EEECCSSSGGGGSCHHHH
T ss_pred             HHHHHHHcCCE-EEEEeCCcCCcccCHHHH
Confidence            99999999985 778999999   777765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=5.4e-21  Score=142.73  Aligned_cols=101  Identities=34%  Similarity=0.508  Sum_probs=92.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.  .+.+..+++.
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~  148 (213)
T 3cph_A           71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGE  148 (213)
T ss_dssp             EEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988776 579999999999993  5788899999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++..++++ |+++||+++.||++.
T Consensus       149 ~~~~~~~~~-~~~~Sa~~~~gi~~l  172 (213)
T 3cph_A          149 ALAKELGIP-FIESSAKNDDNVNEI  172 (213)
T ss_dssp             HHHHHHTCC-EEECBTTTTBSSHHH
T ss_pred             HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            999999985 778999999999987

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.86  E-value=2.5e-21  Score=140.32  Aligned_cols=102  Identities=30%  Similarity=0.442  Sum_probs=94.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus        65 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  143 (179)
T 2y8e_A           65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGE  143 (179)
T ss_dssp             EEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHH
Confidence            4799999999999999999999999999999999999999999999987765 6899999999999987 7889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++ .|+++||++|.|+++.
T Consensus       144 ~~~~~~~~-~~~~~Sa~~~~~i~~l  167 (179)
T 2y8e_A          144 RKAKELNV-MFIETSAKAGYNVKQL  167 (179)
T ss_dssp             HHHHHHTC-EEEEEBTTTTBSHHHH
T ss_pred             HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999997 5778999999999976

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.4e-21  Score=140.62  Aligned_cols=101  Identities=32%  Similarity=0.467  Sum_probs=92.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+....  .++|++||+||+|+.  .+.++.+++
T Consensus        66 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~  143 (195)
T 1x3s_A           66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEG  143 (195)
T ss_dssp             EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHH
T ss_pred             EEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHH
Confidence            4799999999999999999999999999999999999999999999988765  689999999999995  467889999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++..++ .|+++||+++.||++.
T Consensus       144 ~~~~~~~~~-~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A          144 LKFARKHSM-LFIEASAKTCDGVQCA  168 (195)
T ss_dssp             HHHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHcCC-EEEEecCCCCCCHHHH
Confidence            999999987 4778999999999976

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.85  E-value=5.3e-21  Score=143.72  Aligned_cols=102  Identities=21%  Similarity=0.369  Sum_probs=91.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||+|++.+..++..+++++|++|+|||++++.||+.+..|+..+.... .+.|++|||||+|+.+ .+.++.+++.
T Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  141 (218)
T 4djt_A           63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVM  141 (218)
T ss_dssp             EEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHH
T ss_pred             EEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence            4799999999999999999999999999999999999999999999988776 5699999999999987 7789999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+++ |+++||++|.||++.
T Consensus       142 ~~~~~~~~~-~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A          142 EVLKGKNYE-YFEISAKTAHNFGLP  165 (218)
T ss_dssp             HHTTTCCCE-EEEEBTTTTBTTTHH
T ss_pred             HHHHHcCCc-EEEEecCCCCCHHHH
Confidence            999988875 778999999999986

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.85  E-value=8.3e-21  Score=140.42  Aligned_cols=101  Identities=18%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+   .++.+++
T Consensus        69 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~  145 (190)
T 1m2o_B           69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAEL  145 (190)
T ss_dssp             EEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHH
Confidence            4799999999999999999999999999999999999999999999887653  6899999999999965   6778887


Q ss_pred             HHHHHhc-----------CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR-----------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~-----------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++....           ....|+++||++|.||+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  182 (190)
T 1m2o_B          146 RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA  182 (190)
T ss_dssp             HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred             HHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence            7766542           2235889999999999987

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=3.5e-21  Score=142.59  Aligned_cols=101  Identities=22%  Similarity=0.340  Sum_probs=92.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++. ..++..+++++|++++|||++++.||+.+..|+..+....  +++|++|||||+|+.+ .+.++.+++
T Consensus        78 ~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~  155 (196)
T 2atv_A           78 MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEG  155 (196)
T ss_dssp             EEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHH
Confidence            47999999998 7889999999999999999999999999999999888764  6899999999999987 788999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcc-hhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQ-EVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~-~v~~~  104 (170)
                      ..+++.+++ .|+++||++|. ||+++
T Consensus       156 ~~~~~~~~~-~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          156 EKLATELAC-AFYECSACTGEGNITEI  181 (196)
T ss_dssp             HHHHHHHTS-EEEECCTTTCTTCHHHH
T ss_pred             HHHHHHhCC-eEEEECCCcCCcCHHHH
Confidence            999999987 57789999999 99976

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.85  E-value=1.4e-20  Score=139.89  Aligned_cols=102  Identities=30%  Similarity=0.475  Sum_probs=90.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+....     .++|+++||||+|+.+  +.+..
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~  136 (207)
T 1vg8_A           59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVAT  136 (207)
T ss_dssp             EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCH
T ss_pred             EEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc--cccCH
Confidence            4799999999999999999999999999999999999999999999887654     4789999999999974  57788


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++.......|+++||++|.|+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  165 (207)
T 1vg8_A          137 KRAQAWCYSKNNIPYFETSAKEAINVEQA  165 (207)
T ss_dssp             HHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            89999998444345789999999999976

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.85  E-value=5.2e-22  Score=147.56  Aligned_cols=102  Identities=35%  Similarity=0.530  Sum_probs=84.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus        84 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~  162 (199)
T 3l0i_B           84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAK  162 (199)
T ss_dssp             EEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-C
T ss_pred             EEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHH
Confidence            4799999999999999999999999999999999999999999999998776 6899999999999987 7888888899


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++..++++ |+++||+++.||++.
T Consensus       163 ~~~~~~~~~-~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          163 EFADSLGIP-FLETSAKNATNVEQS  186 (199)
T ss_dssp             HHHHTTTCC-BCCCCC---HHHHHH
T ss_pred             HHHHHcCCe-EEEEECCCCCCHHHH
Confidence            999999986 668999999999976

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=1.7e-21  Score=139.68  Aligned_cols=100  Identities=16%  Similarity=0.377  Sum_probs=81.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||+++++||..+..|+..+....  +++|+++||||+|+.+   ....++.
T Consensus        46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~  122 (164)
T 1r8s_A           46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEI  122 (164)
T ss_dssp             EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC---CCCHHHH
Confidence            4799999999999999999999999999999999999999999999887643  6899999999999976   2333332


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...     ++..++ .|+++||++|.||+++
T Consensus       123 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A          123 TDKLGLHSLRHRNW-YIQATCATSGDGLYEG  152 (164)
T ss_dssp             HHHTTGGGCSSCCE-EEEECBTTTTBTHHHH
T ss_pred             HHHhCcccccCccE-EEEEcccCCCcCHHHH
Confidence            221     111222 4889999999999976

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=5.1e-21  Score=137.64  Aligned_cols=102  Identities=24%  Similarity=0.276  Sum_probs=92.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +++|||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....   +++|+++||||+|+.+ .+.++..+
T Consensus        53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~  131 (172)
T 2erx_A           53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSE  131 (172)
T ss_dssp             EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHH
T ss_pred             EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHH
Confidence            4799999999999999999999999999999999999999999988887654   5899999999999987 77889999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..+++ .|+++||++|.|+++.
T Consensus       132 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l  157 (172)
T 2erx_A          132 AEALARTWKC-AFMETSAKLNHNVKEL  157 (172)
T ss_dssp             HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHhCC-eEEEecCCCCcCHHHH
Confidence            9999999987 4778999999999976

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.84  E-value=3.5e-20  Score=136.19  Aligned_cols=101  Identities=23%  Similarity=0.340  Sum_probs=81.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....  .++|+++|+||+|+..  +.+..+++
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~  148 (190)
T 3con_A           71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQA  148 (190)
T ss_dssp             EEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHH
T ss_pred             EEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHH
Confidence            4699999999999999999999999999999999999999999999987765  4899999999999975  57888999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++.++++ |+++||+++.|+.++
T Consensus       149 ~~~~~~~~~~-~~~~Sa~~~~gi~~l  173 (190)
T 3con_A          149 HELAKSYGIP-FIETSAKTRQGVEDA  173 (190)
T ss_dssp             HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            9999999985 778999999999976

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.84  E-value=2.5e-20  Score=132.95  Aligned_cols=101  Identities=24%  Similarity=0.368  Sum_probs=92.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||||++.+..++..+++++|++++|||++++.+++.+..|+..+....  .++|+++|+||+|+..  +.+..+++
T Consensus        53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~  130 (166)
T 2ce2_X           53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQA  130 (166)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHH
T ss_pred             EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHH
Confidence            4689999999999999999999999999999999999999999999988775  4899999999999975  56788999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++.++++ ++++||+++.|+.+.
T Consensus       131 ~~~~~~~~~~-~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X          131 QDLARSYGIP-YIETSAKTRQGVEDA  155 (166)
T ss_dssp             HHHHHHHTCC-EEEECTTTCTTHHHH
T ss_pred             HHHHHHcCCe-EEEecCCCCCCHHHH
Confidence            9999999985 778999999999976

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.84  E-value=1e-20  Score=142.68  Aligned_cols=100  Identities=24%  Similarity=0.483  Sum_probs=89.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||+|++.|..++..+++++|++++|||++++.||+.+..|+..+....+++|++|||||+|+.+ .. +. .++..
T Consensus        66 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~-~~-~~~~~  142 (221)
T 3gj0_A           66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RK-VK-AKSIV  142 (221)
T ss_dssp             EEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS-CS-SC-GGGCC
T ss_pred             EEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc-cc-cc-HHHHH
Confidence            47999999999999999999999999999999999999999999999998888999999999999976 33 33 26667


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++ .|+++||++|.||+++
T Consensus       143 ~~~~~~~-~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A          143 FHRKKNL-QYYDISAKSNYNFEKP  165 (221)
T ss_dssp             HHHHHTC-EEEECBGGGTBTTTHH
T ss_pred             HHHHcCC-EEEEEeCCCCCCHHHH
Confidence            8888887 5778999999999987

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.84  E-value=1.5e-20  Score=149.22  Aligned_cols=104  Identities=22%  Similarity=0.340  Sum_probs=95.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+.          
T Consensus       205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  284 (332)
T 2wkq_A          205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  284 (332)
T ss_dssp             EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhcccc
Confidence            469999999999999999999999999999999999999997 799998887789999999999998652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+++..+++..++..|+++||++|.||++.
T Consensus       285 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  320 (332)
T 2wkq_A          285 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  320 (332)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             ccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHH
Confidence             26799999999999999877899999999999976

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.83  E-value=1.8e-20  Score=138.31  Aligned_cols=100  Identities=17%  Similarity=0.305  Sum_probs=81.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---------CCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---------ENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---------~~~pvvlvgnK~Dl~~~~~   71 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||..+..|+..+....         +++|++|||||+|+.+ . 
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~-  142 (199)
T 4bas_A           65 FTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG-A-  142 (199)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT-C-
T ss_pred             EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC-C-
Confidence            4799999999999999999999999999999999999999999998887652         2899999999999976 3 


Q ss_pred             CCCHHHHHH------HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMEN------FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~------~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ...++...      +++..++ .|+++||++|.||+++
T Consensus       143 -~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l  179 (199)
T 4bas_A          143 -KTAAELVEILDLTTLMGDHPF-VIFASNGLKGTGVHEG  179 (199)
T ss_dssp             -CCHHHHHHHHTHHHHHTTSCE-EEEECBTTTTBTHHHH
T ss_pred             -CCHHHHHHHhcchhhccCCee-EEEEeeCCCccCHHHH
Confidence             22222211      1133454 5889999999999976

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=6.3e-20  Score=134.76  Aligned_cols=100  Identities=20%  Similarity=0.370  Sum_probs=81.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||+++++||+.+..|+..+....  .+.|+++||||+|+.+   .++.++.
T Consensus        62 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  138 (187)
T 1zj6_A           62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEI  138 (187)
T ss_dssp             EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHH
Confidence            4799999999999999999999999999999999999999999999988763  6899999999999965   4555565


Q ss_pred             HHHHHh-----cCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSR-----RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~-----~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+....     .++ .|+++||++|.||++.
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l  168 (187)
T 1zj6_A          139 SQFLKLTSIKDHQW-HIQACCALTGEGLCQG  168 (187)
T ss_dssp             HHHHTGGGCCSSCE-EEEECBTTTTBTHHHH
T ss_pred             HHHhChhhhcCCCc-EEEEccCCCCcCHHHH
Confidence            544332     233 5889999999999976

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.83  E-value=1e-20  Score=136.23  Aligned_cols=100  Identities=22%  Similarity=0.367  Sum_probs=82.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||..+..|+..+....  +++|+++|+||+|+.+ .  .+.++.
T Consensus        53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~  129 (171)
T 1upt_A           53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ-A--MTSSEM  129 (171)
T ss_dssp             EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC-C--CCHHHH
Confidence            4799999999999999999999999999999999999999999998887654  6899999999999976 3  222222


Q ss_pred             HH-----HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 EN-----FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~-----~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..     +++..++ .|+++||++|.|+++.
T Consensus       130 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A          130 ANSLGLPALKDRKW-QIFKTSATKGTGLDEA  159 (171)
T ss_dssp             HHHHTGGGCTTSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHhCchhccCCce-EEEECcCCCCcCHHHH
Confidence            22     2233344 5889999999999976

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.83  E-value=4.5e-21  Score=142.27  Aligned_cols=102  Identities=14%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CeEEecCCccccccch---hhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC------
Q psy17235          1 MQLWDTGGMERVASIT---SSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~---~~~~~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~------   69 (170)
                      ++||||+|++.|..+.   ..|++++|++|+|||++++  +++..+..|+.++....+++|++|||||+|+.++      
T Consensus        71 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  150 (196)
T 3llu_A           71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET  150 (196)
T ss_dssp             EEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred             EEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHH
Confidence            5799999999997776   8999999999999999998  7788888888888766689999999999997541      


Q ss_pred             CCCCCHHHHHHHHH----hcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWS----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.++.+++..+++    ..++ .|+++||++ .||.++
T Consensus       151 ~~~v~~~~~~~~~~~~~~~~~~-~~~e~Sa~~-~~v~~~  187 (196)
T 3llu_A          151 QRDIHQRANDDLADAGLEKLHL-SFYLTSIYD-HSIFEA  187 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSCE-EEEEECTTS-THHHHH
T ss_pred             HhHHHHHHHHHHHHhhhhcCCc-ceEEEEech-hhHHHH
Confidence            35677788888998    5666 578999999 999977

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.83  E-value=2.8e-21  Score=142.03  Aligned_cols=103  Identities=17%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC---HH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT---EA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~---~~   76 (170)
                      +++|||+|++.|..+++.|+++++++++|||++++ .||+.+..|+.++....+++|++|||||+|+.+ .+.++   .+
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~  136 (184)
T 2zej_A           58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD-EKQRKACMSK  136 (184)
T ss_dssp             EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC-HHHHHHHHHH
T ss_pred             EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc-chhhHHHHHH
Confidence            47999999999999999999999999999999998 589999999999887767899999999999976 55544   45


Q ss_pred             HHHHHHHhcCCC---eEEEcccCCcc-hhhhH
Q psy17235         77 DMENFWSRRSSR---RFKPQEVVEPQ-EVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~---~~~e~Sa~~~~-~v~~~  104 (170)
                      .+..+++.++++   .|+++||+++. ++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l  168 (184)
T 2zej_A          137 ITKELLNKRGFPAIRDYHFVNATEESDALAKL  168 (184)
T ss_dssp             HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHH
T ss_pred             HHHHHHHhcCCcchhheEEEecccCchhHHHH
Confidence            567788888886   38899999996 76654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.83  E-value=6e-21  Score=154.53  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |+||||+||+.|+.+|.+||++++++|+|||+++          ..+|.....|+..+....  +++|+||+|||+|+..
T Consensus       195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~  274 (353)
T 1cip_A          195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE  274 (353)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence            5799999999999999999999999999999999          567999999999988753  7899999999999853


Q ss_pred             CCC---------------CCCHHHHHHHHHh----------cCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTP---------------QVTEADMENFWSR----------RSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~---------------~v~~~~~~~~a~~----------~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+               .++.+++..++..          ....+|++|||+++.||.++|
T Consensus       275 -~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF  335 (353)
T 1cip_A          275 -EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  335 (353)
T ss_dssp             -HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             -hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence             22               4788999999873          123468899999999999873

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=7e-21  Score=154.17  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |+||||+||+.|+.+|.+||++++++|+|||++          +.+||+.+..|+..+....  +++|+||||||+|+..
T Consensus       185 l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~  264 (354)
T 2xtz_A          185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  264 (354)
T ss_dssp             EEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             eEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhh
Confidence            579999999999999999999999999999999          8899999999999988753  7899999999999854


Q ss_pred             CCCC--C-------------------CHHHHHHHHHhc--------------C-CCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQ--V-------------------TEADMENFWSRR--------------S-SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~--v-------------------~~~~~~~~a~~~--------------~-~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.  +                   +.+++..++...              + ..++++|||+++.||.++|
T Consensus       265 -~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF  336 (354)
T 2xtz_A          265 -KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF  336 (354)
T ss_dssp             -HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             -hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence             221  1                   256777775431              2 2346899999999999873

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.8e-20  Score=137.32  Aligned_cols=101  Identities=24%  Similarity=0.257  Sum_probs=90.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....   +++|+++||||+|+..  +.++.++
T Consensus        58 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~  135 (199)
T 2gf0_A           58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTRE  135 (199)
T ss_dssp             EEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHH
T ss_pred             EEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHH
Confidence            4799999999999999999999999999999999999999998987776653   5789999999999975  6788899


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..+++ .|+++||++|.||++.
T Consensus       136 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A          136 AQAVAQEWKC-AFMETSAKMNYNVKEL  161 (199)
T ss_dssp             HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred             HHHHHHHhCC-eEEEEecCCCCCHHHH
Confidence            9999999997 4778999999999976

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.83  E-value=9.6e-20  Score=134.08  Aligned_cols=101  Identities=19%  Similarity=0.311  Sum_probs=85.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      ++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+....    .++|+++||||+|+.+   .++.+
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~  145 (190)
T 2h57_A           69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSV  145 (190)
T ss_dssp             EEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHH
Confidence            4799999999999999999999999999999999999999999999887654    4799999999999965   55667


Q ss_pred             HHHHHHH--hcC--CCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWS--RRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~--~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      +..++..  ...  ...|+++||++|.||++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A          146 KVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             HHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            7766663  211  225889999999999976

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.72  E-value=3.9e-22  Score=148.66  Aligned_cols=104  Identities=21%  Similarity=0.314  Sum_probs=92.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT---------   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~---------   70 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+..         
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  159 (204)
T 3th5_A           80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  159 (204)
Confidence            469999999999999999999999999999999999999997 8988887766789999999999997621         


Q ss_pred             --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                        +.++.+++..+++..++..|+++||++|.||++.
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l  195 (204)
T 3th5_A          160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  195 (204)
Confidence              2677888999999999856789999999999976

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.82  E-value=1.2e-19  Score=132.74  Aligned_cols=100  Identities=20%  Similarity=0.376  Sum_probs=84.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||+|++.|..++..+++++|++++|||++++.||+.+..|+..+....  .++|+++||||+|+.+   .++.++.
T Consensus        67 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i  143 (181)
T 2h17_A           67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEI  143 (181)
T ss_dssp             EEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc---CCCHHHH
Confidence            4799999999999999999999999999999999999999999998887653  7899999999999965   4455555


Q ss_pred             HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+...     ..++ .|+++||++|.||+++
T Consensus       144 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A          144 SQFLKLTSIKDHQW-HIQACCALTGEGLCQG  173 (181)
T ss_dssp             HHHTTGGGCCSSCE-EEEECBTTTTBTHHHH
T ss_pred             HHHhCcccccCCce-EEEEccCCCCcCHHHH
Confidence            54432     1222 5889999999999976

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.82  E-value=8.8e-20  Score=133.79  Aligned_cols=100  Identities=18%  Similarity=0.345  Sum_probs=81.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..|++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .  .+.++.
T Consensus        62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~--~~~~~~  138 (181)
T 1fzq_A           62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT-A--APASEI  138 (181)
T ss_dssp             EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc-C--CCHHHH
Confidence            4799999999999999999999999999999999999999999998876542  6899999999999976 3  233333


Q ss_pred             HHHH-----HhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFW-----SRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a-----~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+..     ...++ .|+++||++|.||+++
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l  168 (181)
T 1fzq_A          139 AEGLNLHTIRDRVW-QIQSCSALTGEGVQDG  168 (181)
T ss_dssp             HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHhCchhccCCce-EEEEccCCCCCCHHHH
Confidence            3221     11222 5889999999999976

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.82  E-value=1.3e-20  Score=138.46  Aligned_cols=100  Identities=20%  Similarity=0.342  Sum_probs=81.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..++..+++++|++++|||+++++||..+..|+..+....  ++.|+++||||+|+.+ .  ...++.
T Consensus        68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~  144 (189)
T 2x77_A           68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD-A--ASEAEI  144 (189)
T ss_dssp             EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC-C--CCHHHH
Confidence            4799999999999999999999999999999999999999999998887654  6899999999999976 2  233332


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...     +...++ .|+++||+++.||++.
T Consensus       145 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A          145 AEQLGVSSIMNRTW-TIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHhChhhccCCce-EEEEccCCCccCHHHH
Confidence            221     222333 5889999999999976

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.82  E-value=8.9e-20  Score=133.55  Aligned_cols=100  Identities=17%  Similarity=0.362  Sum_probs=83.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|+++||||+|+.+ .  ...++.
T Consensus        64 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~  140 (186)
T 1ksh_A           64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG-A--LSCNAI  140 (186)
T ss_dssp             EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC-C--CCHHHH
Confidence            4799999999999999999999999999999999999999999998887653  6899999999999976 2  344444


Q ss_pred             HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+...     ..++ .|+++||++|.|+++.
T Consensus       141 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A          141 QEALELDSIRSHHW-RIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHhChhhccCCce-EEEEeeCCCCCCHHHH
Confidence            33322     2233 5889999999999976

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.82  E-value=1.3e-20  Score=139.53  Aligned_cols=100  Identities=13%  Similarity=0.344  Sum_probs=76.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+....  +++|++|||||+|+.+ .  ...++.
T Consensus        75 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~-~--~~~~~i  151 (192)
T 2b6h_A           75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN-A--MPVSEL  151 (192)
T ss_dssp             EEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC-C--CCHHHH
Confidence            4799999999999999999999999999999999999999999999887654  6899999999999976 2  333332


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...     +...++ .|+++||++|.||+++
T Consensus       152 ~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l  181 (192)
T 2b6h_A          152 TDKLGLQHLRSRTW-YVQATCATQGTGLYDG  181 (192)
T ss_dssp             HHHTTGGGCSSCCE-EEEECBTTTTBTHHHH
T ss_pred             HHHhCcccccCCce-EEEECcCCCcCCHHHH
Confidence            221     111222 4789999999999976

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=1.7e-19  Score=131.42  Aligned_cols=101  Identities=17%  Similarity=0.328  Sum_probs=80.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+....  .+.|+++|+||+|+.+   ..+.++.
T Consensus        64 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~i  140 (183)
T 1moz_A           64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG---ALSASEV  140 (183)
T ss_dssp             EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC---CCCHHHH
Confidence            4799999999999999999999999999999999999999999999887663  7899999999999976   3455555


Q ss_pred             HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      .........    ..|+++||++|.||++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A          141 SKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             HHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             HHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            444332211    25889999999999976

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=2.1e-20  Score=153.42  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |+||||+||+.|+.+|..||++++++|+|||+++          .+||+.+..|+..+....  +++|+||||||+|+..
T Consensus       219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred             ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence            5799999999999999999999999999999999          899999999999998763  7899999999999854


Q ss_pred             CCCC---C---------------------------CHHHHHHHH-----Hhc-------CCCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQ---V---------------------------TEADMENFW-----SRR-------SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~---v---------------------------~~~~~~~~a-----~~~-------~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.   +                           +.+++..|+     +.+       ...++.+|||+++.||.++|
T Consensus       299 -~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          299 -EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             -HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             -hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence             322   2                           145666664     221       12367899999999999874

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.80  E-value=3.6e-20  Score=148.43  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=87.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |+||||+||++|+++|.+||++++|+|+|||++          +.++|.....|+..+....  +++|++|+|||+|+..
T Consensus       169 l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          169 FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             EEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence            579999999999999999999999999999654          7788998889999887654  7899999999999865


Q ss_pred             CCC----------------CCCHHHHHHHH----------HhcCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTP----------------QVTEADMENFW----------SRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~----------------~v~~~~~~~~a----------~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+                .++.+++..+.          ...++ ++.+|||+++.||..+|
T Consensus       249 -~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF  309 (327)
T 3ohm_A          249 -EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVF  309 (327)
T ss_dssp             -HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHH
T ss_pred             -hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHH
Confidence             33                57889998884          33443 67889999999999773

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.80  E-value=5.1e-19  Score=130.21  Aligned_cols=100  Identities=19%  Similarity=0.331  Sum_probs=81.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....  .++|++|||||+|+.+   ....++.
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~  145 (188)
T 1zd9_A           69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---ALDEKEL  145 (188)
T ss_dssp             EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc---CCCHHHH
Confidence            4799999999999999999999999999999999999999999998887653  6899999999999976   2333332


Q ss_pred             HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .....     ..+ ..|+++||++|.||++.
T Consensus       146 ~~~~~~~~~~~~~-~~~~~~SA~~g~gv~~l  175 (188)
T 1zd9_A          146 IEKMNLSAIQDRE-ICCYSISCKEKDNIDIT  175 (188)
T ss_dssp             HHHTTGGGCCSSC-EEEEECCTTTCTTHHHH
T ss_pred             HHHhChhhhccCC-eeEEEEECCCCCCHHHH
Confidence            22211     122 24789999999999976

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.79  E-value=8.8e-20  Score=148.16  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      ++|||||||+.|+.+|.+||++++++|+|||+++          .++|.....|+..+....  +++|+||+|||+|+..
T Consensus       203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~  282 (362)
T 1zcb_A          203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  282 (362)
T ss_dssp             EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence            5799999999999999999999999999999999          789999999999988753  7899999999999853


Q ss_pred             CCC----------------CCCHHHHHHHHHh----------cCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTP----------------QVTEADMENFWSR----------RSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~----------------~v~~~~~~~~a~~----------~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+                .++.+++..++..          ....+|++|||+++.||.++|
T Consensus       283 -~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF  344 (362)
T 1zcb_A          283 -EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  344 (362)
T ss_dssp             -HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             -hhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence             22                3788888887721          112368899999999999873

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.78  E-value=3e-19  Score=141.91  Aligned_cols=103  Identities=18%  Similarity=0.317  Sum_probs=87.6

Q ss_pred             CeEEecCCcccc-----ccchhhhccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhCCCCeEEEEeeCCCCCCC-CC
Q psy17235          1 MQLWDTGGMERV-----ASITSSYYKFAEAAILVFSLDNAASFHVLSQHL---LEIVTYAENAKIFLCGNKSDLEGT-TP   71 (170)
Q Consensus         1 l~iwDt~G~e~~-----~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~---~~i~~~~~~~pvvlvgnK~Dl~~~-~~   71 (170)
                      ++||||||++.|     ..++..+++++|++|+|||++++.||+.+..|.   ..+....+++|++|||||+|+.+. .+
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r  133 (307)
T 3r7w_A           54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR  133 (307)
T ss_dssp             EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH
T ss_pred             EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhh
Confidence            479999999998     789999999999999999999999999997764   445555579999999999998641 23


Q ss_pred             C----CCHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         72 Q----VTEADMENFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~----v~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      .    +..+++.++++.+|+  ..|+++||++ .++.++
T Consensus       134 ~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~  171 (307)
T 3r7w_A          134 EELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA  171 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence            3    777889999999985  5788999999 788877

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=139.34  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             cCCccccccchhhhcc---------------------CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhC--CCCeEEEE
Q psy17235          6 TGGMERVASITSSYYK---------------------FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYA--ENAKIFLC   60 (170)
Q Consensus         6 t~G~e~~~~~~~~~~~---------------------~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~--~~~pvvlv   60 (170)
                      ++|+++|..++..||+                     ++|++|+|||++++  .||+.+..|+..+....  +++|++||
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV  204 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV  204 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            8899999999999998                     89999999999999  99999999999987762  78999999


Q ss_pred             eeCCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEcccCCcchhhhH
Q psy17235         61 GNKSDLEGTTPQVTEADMENFWSRR-SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        61 gnK~Dl~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~~  104 (170)
                      |||+|+.+ .+.+  +++..++... ++ .|+++||++|.||+++
T Consensus       205 ~NK~Dl~~-~~~v--~~~~~~~~~~~~~-~~~e~SAk~g~gv~el  245 (255)
T 3c5h_A          205 LTKCDEGV-ERYI--RDAHTFALSKKNL-QVVETSARSNVNVDLA  245 (255)
T ss_dssp             EECGGGBC-HHHH--HHHHHHHHTSSSC-CEEECBTTTTBSHHHH
T ss_pred             EEcccccc-cHHH--HHHHHHHHhcCCC-eEEEEECCCCCCHHHH
Confidence            99999976 5555  5788888774 55 5779999999999976

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.77  E-value=5.2e-18  Score=125.95  Aligned_cols=102  Identities=33%  Similarity=0.513  Sum_probs=92.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.... .+.|+++||||+|+.+ .+.++.+++.
T Consensus        56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~  134 (199)
T 2f9l_A           56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEAR  134 (199)
T ss_dssp             EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHH
Confidence            3689999999999999999999999999999999999999999998887655 6799999999999987 7888999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...++. |+++||+++.|+.+.
T Consensus       135 ~l~~~~~~~-~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A          135 AFAEKNNLS-FIETSALDSTNVEEA  158 (199)
T ss_dssp             HHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999985 667999999999987

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.77  E-value=4.3e-19  Score=132.88  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=55.6

Q ss_pred             CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~   68 (170)
                      ++||||||++.|.. ++..|++++|++|+|||+++.. ++..+..|+..+...    .+++|++|||||+|+..
T Consensus        56 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence            47999999999988 8999999999999999999964 566665554443322    25799999999999976

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.77  E-value=2e-19  Score=144.64  Aligned_cols=105  Identities=19%  Similarity=0.173  Sum_probs=86.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      |+||||+||++|+.+|.+||++++|+|+|||++          +.++|.....|+..+....  +++|++|+|||+|+..
T Consensus       163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            589999999999999999999999999999999          7899999999999887654  7899999999999853


Q ss_pred             C--------------CCCCCHHHHHHHHHhcC--------------------------CCeEEEcccCCcchhhhHH
Q psy17235         69 T--------------TPQVTEADMENFWSRRS--------------------------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~--------------~~~v~~~~~~~~a~~~~--------------------------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .              ....+.+++..+....-                          ..++.+|||+++.||..+|
T Consensus       243 eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          243 EKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            1              01135667766553321                          2478899999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.76  E-value=1.1e-18  Score=138.48  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=83.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||  |++|..+++.|++++|++|+|||++++. ||+.+..|+..+..  .++|++|||||+|+.+ .+.+  +++.
T Consensus        65 ~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~-~~~v--~~~~  137 (301)
T 1u0l_A           65 GVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYD-EDDL--RKVR  137 (301)
T ss_dssp             EEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCC-HHHH--HHHH
T ss_pred             EEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCC-chhH--HHHH
Confidence            479999  9999999999999999999999999997 79999999988765  4899999999999976 4443  5577


Q ss_pred             HHHHhcCC-CeEEEcccCCcchhhhHH
Q psy17235         80 NFWSRRSS-RRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        80 ~~a~~~~~-~~~~e~Sa~~~~~v~~~~  105 (170)
                      +++..++. ..|+++||++|.||++++
T Consensus       138 ~~~~~~~~~~~~~~~SAktg~gv~~lf  164 (301)
T 1u0l_A          138 ELEEIYSGLYPIVKTSAKTGMGIEELK  164 (301)
T ss_dssp             HHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred             HHHHHHhhhCcEEEEECCCCcCHHHHH
Confidence            78877762 257789999999999874

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.76  E-value=3.6e-18  Score=136.99  Aligned_cols=98  Identities=15%  Similarity=0.365  Sum_probs=75.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      ++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+....  +++|++|||||+|+.+ .  ...++.
T Consensus       211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~~~i  287 (329)
T 3o47_A          211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN-A--MNAAEI  287 (329)
T ss_dssp             EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc-c--cCHHHH
Confidence            4799999999999999999999999999999999999999998888876554  6899999999999976 2  233332


Q ss_pred             HHHHHhcCC-------CeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSS-------RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~-------~~~~e~Sa~~~~~v~~~  104 (170)
                         ....+.       ..|+++||++|.||++.
T Consensus       288 ---~~~~~~~~~~~~~~~~~~vSAk~g~gi~el  317 (329)
T 3o47_A          288 ---TDKLGLHSLRHRNWYIQATCATSGDGLYEG  317 (329)
T ss_dssp             ---HHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred             ---HHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence               222222       24889999999999976

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.73  E-value=6.6e-17  Score=122.53  Aligned_cols=102  Identities=15%  Similarity=0.217  Sum_probs=76.9

Q ss_pred             CeEEecCCc------cc----cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGM------ER----VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~------e~----~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ++||||||+      +.    +..+ ..++..+|++|+|||++++.||..  ...|+..+....+++|+++||||+|+.+
T Consensus        78 ~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~  156 (228)
T 2qu8_A           78 YQIIDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN  156 (228)
T ss_dssp             EEEEECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred             EEEEECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence            479999999      44    3223 345789999999999999988752  3467777766556899999999999987


Q ss_pred             CCCCCCHH---HHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         69 TTPQVTEA---DMENFWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        69 ~~~~v~~~---~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.++.+   .+..++...+ ...|+++||++|.||++.
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  195 (228)
T 2qu8_A          157 -MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA  195 (228)
T ss_dssp             ---CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHH
T ss_pred             -chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHH
Confidence             6777765   4667777766 135889999999999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.72  E-value=4.8e-17  Score=120.25  Aligned_cols=101  Identities=33%  Similarity=0.524  Sum_probs=91.6

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++|||+|++++..++..++++++++++|||+++..+|+.+..|+..+.... .+.|+++++||+|+.+ .+.++.+++..
T Consensus        81 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~  159 (191)
T 1oix_A           81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARA  159 (191)
T ss_dssp             EEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHH
T ss_pred             EEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHH
Confidence            579999999999999999999999999999999999999999998887654 6789999999999987 77888999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...++. |+++||+++.++.+.
T Consensus       160 l~~~~~~~-~ld~Sald~~~v~~l  182 (191)
T 1oix_A          160 FAEKNGLS-FIETSALDSTNVEAA  182 (191)
T ss_dssp             HHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHcCCE-EEEEeCCCCCCHHHH
Confidence            99999884 667999999999976

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.71  E-value=5.4e-18  Score=123.97  Aligned_cols=100  Identities=10%  Similarity=0.052  Sum_probs=83.7

Q ss_pred             CeEEecCC-----------ccccccchhhhccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhhC--CCCeE
Q psy17235          1 MQLWDTGG-----------MERVASITSSYYKF-AEAAILVFSLDNAASFHVL-SQHLLE--------IVTYA--ENAKI   57 (170)
Q Consensus         1 l~iwDt~G-----------~e~~~~~~~~~~~~-ad~iilv~D~t~~~Sf~~~-~~~~~~--------i~~~~--~~~pv   57 (170)
                      +++|||||           ++.|..++..|+++ ++++++||+++|+.||..+ ..|...        +....  .++|+
T Consensus        46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi  125 (190)
T 2cxx_A           46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT  125 (190)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred             EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence            47999999           78888999999998 9999999999999999887 677653        22222  68999


Q ss_pred             EEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe------EEEcccCCcchhhhH
Q psy17235         58 FLCGNKSDLEGTTPQVTEADMENFWSRRSSRR------FKPQEVVEPQEVVEA  104 (170)
Q Consensus        58 vlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~------~~e~Sa~~~~~v~~~  104 (170)
                      ++||||+|+.. .+   .+++..+++.++.++      |+++||++|.||+++
T Consensus       126 ilv~nK~Dl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  174 (190)
T 2cxx_A          126 IVAVNKLDKIK-NV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL  174 (190)
T ss_dssp             EEEEECGGGCS-CH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred             EEEeehHhccC-cH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence            99999999976 33   677889999999863      789999999999976

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.71  E-value=1e-17  Score=120.92  Aligned_cols=96  Identities=15%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++|||||++.|.      .+...|++  ++|++++|||.++.++   ...|+..+..  .+.|+++||||+|+.. .+.
T Consensus        52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~  125 (165)
T 2wji_A           52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAK-SLG  125 (165)
T ss_dssp             EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHH-HTT
T ss_pred             EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhcc-ccC
Confidence            4799999999875      45577776  8999999999998654   3457777765  3799999999999865 455


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++. ++..+++.++++ |+++||++|.||++.
T Consensus       126 ~~~-~~~~~~~~~~~~-~~~~SA~~~~~v~~l  155 (165)
T 2wji_A          126 IEI-DVDKLEKILGVK-VVPLSAAKKMGIEEL  155 (165)
T ss_dssp             CCC-CHHHHHHHHTSC-EEECBGGGTBSHHHH
T ss_pred             hhh-HHHHHHHHhCCC-EEEEEcCCCCCHHHH
Confidence            553 477888888874 778999999999976

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.70  E-value=1.1e-16  Score=115.84  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +++|||||++.|..++..++.++|++++|||++++   .+++.+    ..+..  .++|+++||||+|+.+ .   ..++
T Consensus        57 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~--~~~p~ilv~nK~Dl~~-~---~~~~  126 (178)
T 2lkc_A           57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA--ANVPIIVAINKMDKPE-A---NPDR  126 (178)
T ss_dssp             EEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG--GSCCEEEEEETTTSSC-S---CHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh--CCCCEEEEEECccCCc-C---CHHH
Confidence            46999999999999999999999999999999984   444333    22221  4799999999999975 2   3334


Q ss_pred             HHHHHHhcCC--------CeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSS--------RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~  104 (170)
                      ........+.        ..|+++||++|.||++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  161 (178)
T 2lkc_A          127 VMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHL  161 (178)
T ss_dssp             HHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHH
T ss_pred             HHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHH
Confidence            3333333321        36889999999999976

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=1.2e-17  Score=125.21  Aligned_cols=99  Identities=19%  Similarity=0.280  Sum_probs=77.0

Q ss_pred             CeEEecCCccccccchhhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----CCCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLD-NAASFHVLSQHLLEIVTY-----AENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~-----~~~~pvvlvgnK~Dl~~~~   70 (170)
                      +++|||||++.+..++..|+++    +|++|+|||++ ++.+|..+..|+.++...     .+++|+++|+||+|+.. .
T Consensus        57 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~  135 (218)
T 1nrj_B           57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT-A  135 (218)
T ss_dssp             CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT-C
T ss_pred             EEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc-c
Confidence            5799999999999999999988    99999999999 999999999999888654     26899999999999987 5


Q ss_pred             CCCC------HHHHHHHHHhcCCCeEEEcccCCcchh
Q psy17235         71 PQVT------EADMENFWSRRSSRRFKPQEVVEPQEV  101 (170)
Q Consensus        71 ~~v~------~~~~~~~a~~~~~~~~~e~Sa~~~~~v  101 (170)
                      +.++      .+++..++...++ .|+++||++|.+.
T Consensus       136 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~Sa~~~~~~  171 (218)
T 1nrj_B          136 RPPSKIKDALESEIQKVIERRKK-SLNEVERKINEED  171 (218)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH-HHHC---------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhc-ccccccccccccc
Confidence            5555      5667888887776 4678999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.68  E-value=9.1e-17  Score=136.24  Aligned_cols=99  Identities=15%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..+++++|++|+|||+++.   +.+..|+..+..+.++.|+||||||+|+.. .+.++.+++..
T Consensus       100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~-~~~v~~~~~~~  175 (535)
T 3dpu_A          100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENP-SYNIEQKKINE  175 (535)
T ss_dssp             EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCT-TCCCCHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCccc-ccccCHHHHHH
Confidence            47999999999999999999999999999999765   456789999988888899999999999988 78889999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++ |+++||++|.||++.
T Consensus       176 ~~~~~~~~-~~~vSA~~g~gi~eL  198 (535)
T 3dpu_A          176 RFPAIENR-FHRISCKNGDGVESI  198 (535)
T ss_dssp             HCGGGTTC-EEECCC-----CTTH
T ss_pred             HHHhcCCc-eEEEecCcccCHHHH
Confidence            99999885 778999999999987

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.65  E-value=1.3e-16  Score=113.53  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      +.+|||||++.       +...+..+++++|++++|||++++.+...  .|+..+... .++|+++||||+|+.+ .   
T Consensus        51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~-~---  123 (161)
T 2dyk_A           51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPK-H---  123 (161)
T ss_dssp             EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGG-G---
T ss_pred             EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECccccc-c---
Confidence            46999999987       34566778999999999999999755432  233222222 4799999999999976 2   


Q ss_pred             CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+++.+++ .+++..|+++||++|.|+++.
T Consensus       124 -~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l  152 (161)
T 2dyk_A          124 -ELYLGPLY-GLGFGDPIPTSSEHARGLEEL  152 (161)
T ss_dssp             -GGGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred             -hHhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence             24455566 678766889999999999976

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.64  E-value=4.1e-16  Score=114.58  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=74.2

Q ss_pred             CeEEecCC----------ccccccchhhhccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGG----------MERVASITSSYYKFA---EAAILVFSLDNAASFHVLS--QHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G----------~e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf~~~~--~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +.+|||||          ++.|..++..|++++   |++++|||++++.++....  .|+..     .++|+++|+||+|
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~D  145 (195)
T 1svi_A           71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKAD  145 (195)
T ss_dssp             EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGG
T ss_pred             EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcc
Confidence            47999999          888888999999887   9999999999998887643  34332     5799999999999


Q ss_pred             CCCCCCCCCH--HHHHH-HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         66 LEGTTPQVTE--ADMEN-FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        66 l~~~~~~v~~--~~~~~-~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.+ .+.+..  +++.+ ++. .+...|+++||++|.||++.
T Consensus       146 l~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l  185 (195)
T 1svi_A          146 KIP-KGKWDKHAKVVRQTLNI-DPEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             GSC-GGGHHHHHHHHHHHHTC-CTTSEEEECCTTTCTTHHHH
T ss_pred             cCC-hHHHHHHHHHHHHHHcc-cCCCceEEEEccCCCCHHHH
Confidence            976 444433  33333 322 22346889999999999976

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=3.1e-16  Score=114.65  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=77.4

Q ss_pred             CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++|||||++.|.      .++..|++  .+|++++|+|.++   ++....|+..+..  .+.|+++|+||+|+.. .+.
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~-~~~  129 (188)
T 2wjg_A           56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAK-SLG  129 (188)
T ss_dssp             EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHH-HTT
T ss_pred             EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccc-ccc
Confidence            4799999999885      46777775  5999999999875   5666778887765  4799999999999876 455


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +. .++..+++.++++ |+++||+++.||++.
T Consensus       130 ~~-~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A          130 IE-IDVDKLEKILGVK-VVPLSAAKKMGIEEL  159 (188)
T ss_dssp             CC-CCHHHHHHHHTSC-EEECBGGGTBSHHHH
T ss_pred             ch-HHHHHHHHHhCCC-eEEEEecCCCCHHHH
Confidence            55 4677888888874 778999999999976

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.61  E-value=8.1e-16  Score=112.59  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             CeEEecCC----------ccccccchhhhccCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          1 MQLWDTGG----------MERVASITSSYYKFA---EAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         1 l~iwDt~G----------~e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      +.+|||||          ++.|..++..|++++   |++++|+|.++..+.  ..+..|+...     ++|+++||||+|
T Consensus        70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~D  144 (195)
T 3pqc_A           70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMD  144 (195)
T ss_dssp             EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGG
T ss_pred             EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChh
Confidence            46899999          788888999998877   999999999886443  3344555432     799999999999


Q ss_pred             CCCC-CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         66 LEGT-TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        66 l~~~-~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.+. .+.+..+++..++...+...|+++||++|.||++.
T Consensus       145 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  184 (195)
T 3pqc_A          145 KVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL  184 (195)
T ss_dssp             GSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHH
T ss_pred             cCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence            8651 23455567778888767667889999999999976

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.61  E-value=1.7e-16  Score=115.49  Aligned_cols=94  Identities=12%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +++|||||++.+...        ...+++++|++++|||.+++.|++. ..|+..+.... .++|+++||||+|+.+ ..
T Consensus        54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~  131 (172)
T 2gj8_A           54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITG-ET  131 (172)
T ss_dssp             EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHC-CC
T ss_pred             EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCc-ch
Confidence            469999999764221        1246899999999999999999874 57888877665 5799999999999854 21


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .      .++...+. .|+++||++|.||+++
T Consensus       132 -~------~~~~~~~~-~~~~~SA~~g~gv~~l  156 (172)
T 2gj8_A          132 -L------GMSEVNGH-ALIRLSARTGEGVDVL  156 (172)
T ss_dssp             -C------EEEEETTE-EEEECCTTTCTTHHHH
T ss_pred             -h------hhhhccCC-ceEEEeCCCCCCHHHH
Confidence             1      12222333 5889999999999976

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.59  E-value=4.6e-15  Score=117.82  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             CeEEecCCccccc----------cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMERVA----------SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~~~----------~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.||||||+..+.          ..+..+++++|++++|+|.+++.++.....|+..+...  ++|+++|+||+|+.. .
T Consensus        61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~-~  137 (308)
T 3iev_A           61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIG-P  137 (308)
T ss_dssp             EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSS-S
T ss_pred             EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCC-C
Confidence            4689999986544          56788899999999999999999999888888877663  799999999999974 4


Q ss_pred             CCCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      +....+....++..++ ...++++||++|.|+++.
T Consensus       138 ~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L  172 (308)
T 3iev_A          138 AKNVLPLIDEIHKKHPELTEIVPISALKGANLDEL  172 (308)
T ss_dssp             GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHH
Confidence            5666777888888884 556889999999999976

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.57  E-value=2.1e-15  Score=117.97  Aligned_cols=97  Identities=9%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +++|||||++.|.      .++..|+.  ++|++++|||.++.+++   ..|...+..  .++|+++|+||+|+.. .+.
T Consensus        51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~-~~~  124 (272)
T 3b1v_A           51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLD-GQG  124 (272)
T ss_dssp             EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHH-HTT
T ss_pred             EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCC-cCC
Confidence            4799999999886      46777886  59999999999987654   356666555  4799999999999865 445


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +. .++..+++.+|++ ++++||++|.||++.+
T Consensus       125 ~~-~~~~~l~~~lg~~-vi~~SA~~g~gi~el~  155 (272)
T 3b1v_A          125 KK-INVDKLSYHLGVP-VVATSALKQTGVDQVV  155 (272)
T ss_dssp             CC-CCHHHHHHHHTSC-EEECBTTTTBSHHHHH
T ss_pred             cH-HHHHHHHHHcCCC-EEEEEccCCCCHHHHH
Confidence            55 4677889889986 7789999999999873

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.55  E-value=5.9e-15  Score=114.49  Aligned_cols=97  Identities=21%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             CeEEecCCcccccc------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      ++||||||+..+..      +...|+  .++|++++|+|.++.++..   .|...+...  ++|+++|+||+|+.. .+.
T Consensus        54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~-~~~  127 (258)
T 3a1s_A           54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAK-KTG  127 (258)
T ss_dssp             EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHH-HTT
T ss_pred             EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCC-ccc
Confidence            47999999988865      336666  5899999999999976643   466666554  799999999999865 455


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ++. ++..+++.+|++ ++++||++|.|+++.+
T Consensus       128 i~~-~~~~l~~~lg~~-vi~~SA~~g~gi~el~  158 (258)
T 3a1s_A          128 MKI-DRYELQKHLGIP-VVFTSSVTGEGLEELK  158 (258)
T ss_dssp             CCB-CHHHHHHHHCSC-EEECCTTTCTTHHHHH
T ss_pred             hHH-HHHHHHHHcCCC-EEEEEeeCCcCHHHHH
Confidence            553 477889999986 6689999999999873

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.54  E-value=1.6e-14  Score=120.23  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=80.0

Q ss_pred             CeEEecCC----------ccccccchhh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGG----------MERVASITSS-YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G----------~e~~~~~~~~-~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      ++||||||          ++.|..++.. +++.+|++++|+|.++..+-. ...|...+..  .+.|+|||+||+|+.+ 
T Consensus       245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~-  320 (456)
T 4dcu_A          245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVD-  320 (456)
T ss_dssp             EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSC-
T ss_pred             EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCC-
Confidence            47999999          7888887765 789999999999999865533 3455555554  4799999999999987 


Q ss_pred             CCCCCHHHHHHHHHhc----CCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADMENFWSRR----SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~----~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+.++.+++.+.+++.    +...++++||++|.||++.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  360 (456)
T 4dcu_A          321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM  360 (456)
T ss_dssp             CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred             CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence            6778888877777665    23457889999999999874

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.53  E-value=1.2e-13  Score=111.73  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=78.0

Q ss_pred             CeEEecCCcccccc---------chhhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS---------ITSSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~---------~~~~~~~~ad~iilv~D~t~~~--Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      +++|||||+..+..         ....+...+|++++|+|++++.  +++....|+..+....++.|+++|+||+|+.. 
T Consensus       216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~-  294 (357)
T 2e87_A          216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD-  294 (357)
T ss_dssp             EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC-
T ss_pred             EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC-
Confidence            47999999865321         1223456799999999999987  78888899999887656899999999999976 


Q ss_pred             CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ...  .+++..++...+++ ++++||++|.||++.
T Consensus       295 ~~~--~~~~~~~~~~~~~~-~~~iSA~~g~gi~~l  326 (357)
T 2e87_A          295 EEN--IKRLEKFVKEKGLN-PIKISALKGTGIDLV  326 (357)
T ss_dssp             HHH--HHHHHHHHHHTTCC-CEECBTTTTBTHHHH
T ss_pred             hHH--HHHHHHHHHhcCCC-eEEEeCCCCcCHHHH
Confidence            333  24566677777765 668999999999986

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.52  E-value=2.7e-14  Score=118.32  Aligned_cols=101  Identities=12%  Similarity=0.062  Sum_probs=76.7

Q ss_pred             CeEEecCCc----------cccccchh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGM----------ERVASITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~----------e~~~~~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      ++||||||+          |.|..++. .+++++|++++|||.+++.+++.. .|+..+..  .+.|+++|+||+|+.+ 
T Consensus       225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~-  300 (436)
T 2hjg_A          225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVD-  300 (436)
T ss_dssp             EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSC-
T ss_pred             EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCC-
Confidence            479999998          66666655 488999999999999999998876 57766654  4799999999999987 


Q ss_pred             CCCCCHHHHHH-HHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADMEN-FWSRR---SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~~-~a~~~---~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+.++.++..+ +.+.+   +...++++||++|.||++.+
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~  340 (436)
T 2hjg_A          301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM  340 (436)
T ss_dssp             CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred             cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence            56665544322 22222   23357889999999999873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.51  E-value=3.3e-14  Score=112.68  Aligned_cols=97  Identities=15%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~-~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.||||||+..        +......+++++|++++|||.+++.+...  .|+ ..+....++.|+++|+||+|+.+ ..
T Consensus        57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~-~~  133 (301)
T 1wf3_A           57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAK-YP  133 (301)
T ss_dssp             EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCS-SH
T ss_pred             EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCC-ch
Confidence            46999999876        45567788999999999999998866543  454 44544435799999999999875 22


Q ss_pred             CCCHHHHHHHHHh-cCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSR-RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~-~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .    +....++. .+...++++||++|.|+++.
T Consensus       134 ~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l  163 (301)
T 1wf3_A          134 E----EAMKAYHELLPEAEPRMLSALDERQVAEL  163 (301)
T ss_dssp             H----HHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             H----HHHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence            2    02233333 34456889999999999976

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.49  E-value=7.5e-15  Score=113.83  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             CeEEecCCcccccc----------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS----------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~----------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..+..          ++..|+  +++|++|+|+|.++++++..+..|+.+     .++|+++|+||+|+..
T Consensus        50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE-----LGKPVVVALNMMDIAE  124 (256)
T ss_dssp             EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred             EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence            46999999988764          667788  899999999999998777665544432     3799999999999865


Q ss_pred             CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.+.. ....+++.+|++ ++++||++|.|+++.+
T Consensus       125 -~~~~~~-~~~~l~~~lg~~-vi~~SA~~g~gi~el~  158 (256)
T 3iby_A          125 -HRGISI-DTEKLESLLGCS-VIPIQAHKNIGIPALQ  158 (256)
T ss_dssp             -HTTCEE-CHHHHHHHHCSC-EEECBGGGTBSHHHHH
T ss_pred             -cCCcHH-HHHHHHHHcCCC-EEEEECCCCCCHHHHH
Confidence             333332 245578888885 6789999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.49  E-value=4.8e-14  Score=111.72  Aligned_cols=94  Identities=13%  Similarity=0.013  Sum_probs=78.0

Q ss_pred             CccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC-HHHHHHHHHhc
Q psy17235          8 GMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT-EADMENFWSRR   85 (170)
Q Consensus         8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~-~~~~~~~a~~~   85 (170)
                      .++++..+.+.+++++|++++|||+++|. |+..+..|+..+..  .++|++||+||+|+.+ .+.++ .++...+++..
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~-~~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLN-EEEKKELERWISIYRDA  141 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCC-HHHHHHHHHHHHHHHHT
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCC-ccccHHHHHHHHHHHHC
Confidence            38889999999999999999999999996 99999999987655  5799999999999976 33333 45566677777


Q ss_pred             CCCeEEEcccCCcchhhhHH
Q psy17235         86 SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        86 ~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      |. .++++||++|.|+++.+
T Consensus       142 g~-~~~~~SA~~g~gi~~L~  160 (302)
T 2yv5_A          142 GY-DVLKVSAKTGEGIDELV  160 (302)
T ss_dssp             TC-EEEECCTTTCTTHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHH
Confidence            87 47789999999999763

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.49  E-value=5.4e-14  Score=117.83  Aligned_cols=98  Identities=12%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CeEEecCCccccccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.||||||++.+...+        ..+++++|++++|||.+++.+++.+..+..-+. ...+.|+++|+||+|+.. ...
T Consensus       283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~-~l~~~piIvV~NK~Dl~~-~~~  360 (476)
T 3gee_A          283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKA-AHPAAKFLTVANKLDRAA-NAD  360 (476)
T ss_dssp             EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHH-HCTTSEEEEEEECTTSCT-TTH
T ss_pred             EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHH-hcCCCCEEEEEECcCCCC-ccc
Confidence            4799999998766443        447899999999999999998864433332222 224799999999999976 443


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.   .+.++.. +...++++||++|.||++.
T Consensus       361 ~~---~~~l~~~-~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          361 AL---IRAIADG-TGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             HH---HHHHHHH-HTSCEEECBTTTTBSHHHH
T ss_pred             hh---HHHHHhc-CCCceEEEEECCCCCHHHH
Confidence            32   2334443 2356889999999999986

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.48  E-value=5.2e-14  Score=105.55  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=69.3

Q ss_pred             CeEEecCC----------ccccccchhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGG----------MERVASITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G----------~e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.||||||          ++.|..+...|++.   +|++++|+|.+++.+.. ...|+..+..  .++|+++|+||+|+.
T Consensus        81 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A           81 AHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKL  157 (223)
T ss_dssp             EEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGS
T ss_pred             EEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccC
Confidence            46999999          55667777788776   88899999999865532 2345555444  478999999999986


Q ss_pred             CCCCCCC--HHHHHHHHHhc------CCCeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVT--EADMENFWSRR------SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~--~~~~~~~a~~~------~~~~~~e~Sa~~~~~v~~~  104 (170)
                      . ...+.  .++..+.....      +...++++||++|.||++.
T Consensus       158 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l  201 (223)
T 4dhe_A          158 T-RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDA  201 (223)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred             C-hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence            5 33321  12222333332      4456889999999999976

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.6e-13  Score=100.59  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=60.8

Q ss_pred             CeEEecCCccccccchhhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLD-NAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||++.+...+..++++    +|++|+|||++ ++.+|..+..|+..+....     +++|+++||||+|+.+
T Consensus        93 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A           93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             CSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            5799999999999999988887    89999999999 9999999999988876542     5899999999999976

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.48  E-value=2.8e-14  Score=118.28  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCC-eEEEEeeCCCCCCCCC---
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA-KIFLCGNKSDLEGTTP---   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~-pvvlvgnK~Dl~~~~~---   71 (170)
                      +.||||||++.|...+..+++.+|++|+|||.++ .+|+.+..|..+...+.     .++ |+++++||+|+.+...   
T Consensus        86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~  164 (435)
T 1jny_A           86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK  164 (435)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence            4799999999999999999999999999999999 88887665554443332     244 6899999999865100   


Q ss_pred             --CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         72 --QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 --~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                        ....+++..+++.+++    ..|+++||++|.|+.+.
T Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence              1234567778887774    46889999999999865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.48  E-value=6.2e-14  Score=115.83  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=75.1

Q ss_pred             CeEEecCCccccccc-------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI-------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~-------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      +.||||||++.|..+       +..+++++|++|+|||.+....   ...|+..+...  ++|+++|+||+|+.. .+..
T Consensus        85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~--~~piIvV~NK~Dl~~-~~~~  158 (423)
T 3qq5_A           85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM--EIPFVVVVNKIDVLG-EKAE  158 (423)
T ss_dssp             EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT--TCCEEEECCCCTTTT-CCCT
T ss_pred             EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc--CCCEEEEEeCcCCCC-ccHH
Confidence            479999999988665       3458999999999999943333   35677776665  799999999999987 4443


Q ss_pred             CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                        +.+.++++.++++ ++++||++|.|+++.
T Consensus       159 --~~~~~l~~~~g~~-v~~vSAktg~gI~eL  186 (423)
T 3qq5_A          159 --ELKGLYESRYEAK-VLLVSALQKKGFDDI  186 (423)
T ss_dssp             --HHHHHSSCCTTCC-CCCCSSCCTTSTTTH
T ss_pred             --HHHHHHHHHcCCC-EEEEECCCCCCHHHH
Confidence              6677788888875 668999999999987

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.46  E-value=9.6e-14  Score=111.84  Aligned_cols=99  Identities=13%  Similarity=0.226  Sum_probs=80.1

Q ss_pred             CeEEecCCcc----ccccchhhhccC---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGME----RVASITSSYYKF---AEAAILVFSLDN---AASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e----~~~~~~~~~~~~---ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      +.||||||+.    .+..+...|++.   +|++|+|+|+++   +.+++.+..|+.++..+.   .+.|++||+||+|+.
T Consensus       208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  287 (342)
T ss_dssp             EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence            4799999964    355566777664   999999999999   889999999999998875   489999999999986


Q ss_pred             CCCCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      . .    .+...++++.++. ..++++||+++.|+++.
T Consensus       288 ~-~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL  320 (342)
T 1lnz_A          288 E-A----AENLEAFKEKLTDDYPVFPISAVTREGLREL  320 (342)
T ss_dssp             T-H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred             C-C----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHH
Confidence            5 2    2456677777763 35778999999999976

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.45  E-value=2.1e-13  Score=117.01  Aligned_cols=98  Identities=16%  Similarity=0.086  Sum_probs=80.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|...+..+++.+|++|+|+|.++..+++....|.....   .++|+++|+||+|+.+ .+  ..+...+
T Consensus        73 l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~-a~--~~~v~~e  146 (599)
T 3cb4_D           73 LNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPA-AD--PERVAEE  146 (599)
T ss_dssp             EEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTT-CC--HHHHHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCccc-cc--HHHHHHH
Confidence            4699999999999999999999999999999999888888877865543   3789999999999976 22  3444566


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +...++..  .++++||++|.||++.
T Consensus       147 i~~~lg~~~~~vi~vSAktg~GI~~L  172 (599)
T 3cb4_D          147 IEDIVGIDATDAVRCSAKTGVGVQDV  172 (599)
T ss_dssp             HHHHTCCCCTTCEEECTTTCTTHHHH
T ss_pred             HHHHhCCCcceEEEeecccCCCchhH
Confidence            77777764  4778999999999865

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.45  E-value=3.5e-13  Score=115.58  Aligned_cols=98  Identities=15%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|...+..+++.+|++|+|+|.++..+++....|.....   .++|+++|+||+|+.+ ..  ..+...+
T Consensus        75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~-a~--~~~v~~e  148 (600)
T 2ywe_A           75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPS-AD--VDRVKKQ  148 (600)
T ss_dssp             EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTT-CC--HHHHHHH
T ss_pred             EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccc-cC--HHHHHHH
Confidence            4699999999999999999999999999999999988888888865543   4799999999999976 22  3344566


Q ss_pred             HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      +...++..  .++++||++|.||++.
T Consensus       149 l~~~lg~~~~~vi~vSAktg~GI~~L  174 (600)
T 2ywe_A          149 IEEVLGLDPEEAILASAKEGIGIEEI  174 (600)
T ss_dssp             HHHTSCCCGGGCEECBTTTTBSHHHH
T ss_pred             HHHhhCCCcccEEEEEeecCCCchHH
Confidence            77767764  3788999999999975

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.45  E-value=4.2e-14  Score=110.51  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             CeEEecCCcccccc----------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVAS----------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~----------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..+..          ++..|+  +++|++++|+|.++.++...+..|+.   ..  ++|+++|+||+|+..
T Consensus        52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIAE  126 (274)
T ss_dssp             EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHHH
T ss_pred             eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccchh
Confidence            46899999988763          234444  79999999999998776655444443   33  799999999999865


Q ss_pred             CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.+. .+...+++.+|++ ++++||++|.|+++.+
T Consensus       127 -~~~~~-~~~~~l~~~lg~~-~i~~SA~~g~gi~el~  160 (274)
T 3i8s_A          127 -KQNIR-IEIDALSARLGCP-VIPLVSTRGRGIEALK  160 (274)
T ss_dssp             -HTTEE-ECHHHHHHHHTSC-EEECCCGGGHHHHHHH
T ss_pred             -hhhHH-HHHHHHHHhcCCC-EEEEEcCCCCCHHHHH
Confidence             33332 2356788888885 6789999999999873

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.43  E-value=1.1e-13  Score=107.70  Aligned_cols=99  Identities=16%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             CeEEecCCcccccc------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVAS------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.||||||+..+..      ++..|+  .++|++++|+|.++...   ...|...+... ...|+++|+||+|+.. .+.
T Consensus        52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~-~~~  126 (271)
T 3k53_A           52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLK-KKG  126 (271)
T ss_dssp             EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHH-HHT
T ss_pred             EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCc-ccc
Confidence            46999999998876      677777  68999999999988643   33455555443 2399999999999865 333


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQ  106 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~  106 (170)
                      +..+ ...+++.+|++ ++++||++|.|+.+.+.
T Consensus       127 ~~~~-~~~l~~~lg~~-~~~~Sa~~g~gi~~l~~  158 (271)
T 3k53_A          127 AKID-IKKMRKELGVP-VIPTNAKKGEGVEELKR  158 (271)
T ss_dssp             CCCC-HHHHHHHHSSC-EEECBGGGTBTHHHHHH
T ss_pred             cHHH-HHHHHHHcCCc-EEEEEeCCCCCHHHHHH
Confidence            3332 67788888986 66899999999998743

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.43  E-value=6.1e-12  Score=105.49  Aligned_cols=94  Identities=15%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             CeEEecCCcc-cccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGME-RVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e-~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.||||||++ .+..        ....+++++|++|+|||++++.+++... +++.+    .+.|+++|+||+|+..   
T Consensus       293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~---  364 (482)
T 1xzp_A          293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVE---  364 (482)
T ss_dssp             EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCC---
T ss_pred             EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECccccc---
Confidence            4799999998 6542        2456889999999999999998887643 22322    4789999999999975   


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++.+++..++. .+. .++++||++|.|+++.
T Consensus       365 ~~~~~~~~~~~~-~~~-~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          365 KINEEEIKNKLG-TDR-HMVKISALKGEGLEKL  395 (482)
T ss_dssp             CCCHHHHHHHHT-CST-TEEEEEGGGTCCHHHH
T ss_pred             ccCHHHHHHHhc-CCC-cEEEEECCCCCCHHHH
Confidence            355566655543 233 4778999999999987

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.42  E-value=4e-13  Score=110.23  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=78.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~   78 (170)
                      +.||||||++.|...+..++..+|++|+|+|.++..++.....|+..+... ...|+++|+||+|+.+ ....  ..++.
T Consensus        77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~-~~~~~~~~~~i  154 (403)
T 3sjy_A           77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVS-KEEALSQYRQI  154 (403)
T ss_dssp             EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSC-HHHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccc-hHHHHHHHHHH
Confidence            469999999999999999999999999999999988888888888766554 3358999999999876 2211  11233


Q ss_pred             HHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++....+  ...++++||++|.|+++.
T Consensus       155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L  182 (403)
T 3sjy_A          155 KQFTKGTWAENVPIIPVSALHKINIDSL  182 (403)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             HHHHHhhCCCCCEEEEEECCCCcChHHH
Confidence            34443332  235889999999999865

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.42  E-value=1.3e-13  Score=115.30  Aligned_cols=104  Identities=18%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC-CCCe-EEEEeeCCCCCCCC-----
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA-ENAK-IFLCGNKSDLEGTT-----   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~-~~~p-vvlvgnK~Dl~~~~-----   70 (170)
                      +.|||||||+.|...+..+++.+|++|+|+|.++.   .||+....|...+.... .++| +||++||+|+.+..     
T Consensus       123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~  202 (467)
T 1r5b_A          123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER  202 (467)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence            46999999999999999999999999999999986   45543333433332222 4677 99999999995411     


Q ss_pred             CCCCHHHHHHHHHhc-CCC-----eEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRR-SSR-----RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~-~~~-----~~~e~Sa~~~~~v~~~  104 (170)
                      .....++...+++.. ++.     .|+++||++|.|+.+.
T Consensus       203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            011234567777776 543     4889999999999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.40  E-value=1.8e-12  Score=111.26  Aligned_cols=62  Identities=19%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ++||||||++.|..++..+++.+|++|+|||.++   ++|++.+..+    ..  .++|+++++||+|+..
T Consensus        72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGST
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH--cCCeEEEEeccccccc
Confidence            4799999999999999999999999999999999   7888765432    22  4799999999999864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.40  E-value=4.3e-13  Score=112.49  Aligned_cols=103  Identities=13%  Similarity=0.044  Sum_probs=69.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH--HHHH---HHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL--SQHL---LEIVTYAENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~--~~~~---~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +.||||||++.|...+..+++++|++|+|+|.++..++..+  ..+.   ..+.......|+|||+||+|+.+ .+....
T Consensus       113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~-~~~~~~  191 (483)
T 3p26_A          113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQRF  191 (483)
T ss_dssp             EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT-TCHHHH
T ss_pred             EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc-chHHHH
Confidence            47999999999999999999999999999999997654331  1111   12222223356999999999976 444433


Q ss_pred             HH----HHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         76 AD----MENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~----~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                      ++    ...+....+.    ..|+++||++|.|+.+.
T Consensus       192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33    3344444454    35889999999999863

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.39  E-value=6.4e-13  Score=110.12  Aligned_cols=94  Identities=15%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             CeEEecCCccc---------cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMER---------VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~---------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      ++||||||++.         +...+..++++||++++|||.++..+...  +..|+..     .+.|++||+||+|+.. 
T Consensus        51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~-  124 (439)
T 1mky_A           51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLR-  124 (439)
T ss_dssp             EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHH-
T ss_pred             EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCcc-
Confidence            47999999764         34567788999999999999998766543  3344332     3789999999999854 


Q ss_pred             CCCCCHHHH-HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 TPQVTEADM-ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 ~~~v~~~~~-~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .  + ..+. .+++ .+|+..++++||++|.|+.+.
T Consensus       125 ~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L  156 (439)
T 1mky_A          125 E--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTM  156 (439)
T ss_dssp             H--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHH
T ss_pred             c--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHH
Confidence            1  1 2233 4554 567755778999999999976

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=8.5e-13  Score=99.15  Aligned_cols=99  Identities=8%  Similarity=0.021  Sum_probs=65.5

Q ss_pred             ecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hC--CCCeEEEEeeCC-CCCCCCCCCCHHH
Q psy17235          5 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YA--ENAKIFLCGNKS-DLEGTTPQVTEAD   77 (170)
Q Consensus         5 Dt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~--~~~pvvlvgnK~-Dl~~~~~~v~~~~   77 (170)
                      |.+||+.++.+|+.||.++||+|+|+|.+|++.++ .+..+.++..    ..  .++|++|.+||. |+++   .++..+
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~E  183 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY  183 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHH
Confidence            35699999999999999999999999999987665 4444433322    11  578999999995 7765   667666


Q ss_pred             HHHHHHh---cCCCeEEEcccCCcchhhhH-HHH
Q psy17235         78 MENFWSR---RSSRRFKPQEVVEPQEVVEA-EQV  107 (170)
Q Consensus        78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~-~~~  107 (170)
                      ..+...-   ..-.++..|||.+|+|+.++ .|+
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL  217 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWI  217 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence            5443221   12346888999999999987 444

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.38  E-value=2.1e-12  Score=106.10  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC-CCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP-QVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~-~v~~   75 (170)
                      +.|||||||+.|...+...+..+|++|+|+|.++    +++++.+..|    .. ....|+++++||+|+.+..+ ....
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-LGIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-cCCCeEEEEEEccCCCCHHHHHHHH
Confidence            4799999999998877777888999999999994    5666665433    21 23358999999999976222 2345


Q ss_pred             HHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.++++...  ...++++||++|.|+++.
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L  188 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVL  188 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHH
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHH
Confidence            67777776542  235788999999999865

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.38  E-value=1.2e-12  Score=108.28  Aligned_cols=101  Identities=20%  Similarity=0.202  Sum_probs=74.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--C--CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--V--TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v--~~~   76 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++....+ ...|+..+... .-.|+|+|+||+|+.+ ...  +  ..+
T Consensus       106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~-~~~~~~~~i~~  182 (434)
T 1zun_B          106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNG-FDERVFESIKA  182 (434)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTT-SCHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCc-ccHHHHHHHHH
Confidence            469999999999988889999999999999999865332 33454443332 2236999999999975 211  1  235


Q ss_pred             HHHHHHHhcC--C--CeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRS--S--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~--~--~~~~e~Sa~~~~~v~~~  104 (170)
                      +...+++.++  .  ..++++||++|.|+.+.
T Consensus       183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            5667777777  2  35889999999999874

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.37  E-value=5.6e-13  Score=111.17  Aligned_cols=102  Identities=19%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCC--
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTP--   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~--   71 (170)
                      +.|||||||+.|...+..+++.+|++|+|+|.++..   ||+   ....++..+..  .++| +|+|+||+|+.+...  
T Consensus        87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~  164 (458)
T 1f60_A           87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESR  164 (458)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHH
T ss_pred             EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCHHH
Confidence            479999999999999999999999999999999752   442   22233332222  3565 999999999863111  


Q ss_pred             -CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         72 -QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 -~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                       ....++...+++.+++    ..|+++||++|.|+.+.
T Consensus       165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence             1223456677777775    36889999999999754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.36  E-value=3.1e-13  Score=114.57  Aligned_cols=101  Identities=13%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      ++||||||++.|..++..+++.+|++|+|||.++..+.+....| ..+..  .++|+++++||+|+.+........+...
T Consensus        54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~  130 (537)
T 3izy_P           54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLA  130 (537)
T ss_dssp             CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHh
Confidence            57999999999999999999999999999999997666544333 22222  4789999999999875211111122222


Q ss_pred             H---HHhcC-CCeEEEcccCCcchhhhH
Q psy17235         81 F---WSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~---a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      +   +..++ ...|+++||++|.|+++.
T Consensus       131 ~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P          131 YDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             TTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             hhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            1   22222 235889999999999976

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.35  E-value=6.1e-13  Score=110.37  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCC---
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---FH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTT---   70 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~S---f~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~---   70 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++...   |+   .....+..+..  .++| +|+++||+|+....   
T Consensus        97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~  174 (439)
T 3j2k_7           97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSN  174 (439)
T ss_pred             EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHH
Confidence            4799999999999999999999999999999998532   22   11222222222  3566 99999999985310   


Q ss_pred             --CCCCHHHHHHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235         71 --PQVTEADMENFWSRRSS-----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 --~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~~  104 (170)
                        .....++...+++.+|+     ..|+++||++|.|+.+.
T Consensus       175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l  215 (439)
T 3j2k_7          175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ  215 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence              11223455666666665     25889999999999975

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.34  E-value=7.9e-13  Score=109.50  Aligned_cols=95  Identities=15%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             CeEEecCCcc--------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGME--------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e--------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      ++||||||++        .+...+..+++++|++|+|+|.++..++..  .|+..+... .+.|++||+||+|+.. .+.
T Consensus        53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~-~~~  128 (436)
T 2hjg_A           53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTE-MRA  128 (436)
T ss_dssp             CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC------
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCcc-chh
Confidence            5799999986        577788899999999999999999877654  344443332 5789999999999865 221


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                          +..++. ..|+..++++||++|.|+.+.
T Consensus       129 ----~~~~~~-~lg~~~~~~iSA~~g~gv~~L  155 (436)
T 2hjg_A          129 ----NIYDFY-SLGFGEPYPISGTHGLGLGDL  155 (436)
T ss_dssp             ----CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred             ----hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence                112233 456656788999999999976

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.32  E-value=1.6e-12  Score=106.65  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=74.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC---CCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ---VTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~---v~~~   76 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++.... ....|+..+...  ++| +++++||+|+.+ ...   ...+
T Consensus        77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~~-~~~~~~~~~~  152 (405)
T 2c78_A           77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMVD-DPELLDLVEM  152 (405)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCC-CHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECccccC-cHHHHHHHHH
Confidence            46999999999999889999999999999999987654 345566555443  688 889999999874 221   1234


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQEVV  102 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~  102 (170)
                      +...+++.+++    ..++++||++|.|+.
T Consensus       153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~  182 (405)
T 2c78_A          153 EVRDLLNQYEFPGDEVPVIRGSALLALEQM  182 (405)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHHHH
T ss_pred             HHHHHHHHhcccccCCCEEEccHHHhhhhh
Confidence            56677777774    458899999998753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.32  E-value=7.8e-13  Score=111.27  Aligned_cols=98  Identities=13%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~   76 (170)
                      +.|||||||+.|..++..++..+|++|+|||.++   +++++.+.    .+..  .++|+++++||+|+.+. ...+..+
T Consensus        53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~--~~vPiIVviNKiDl~~~~~~~v~~~  126 (501)
T 1zo1_I           53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA--AQVPVVVAVNKIDKPEADPDRVKNE  126 (501)
T ss_dssp             CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH--TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh--cCceEEEEEEeccccccCHHHHHHH
Confidence            5799999999999999999999999999999988   55655432    2222  47899999999999752 1111111


Q ss_pred             --HHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235         77 --DMENFWSRRS-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 --~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~  104 (170)
                        +...++..++ ...|+++||++|.|+++.
T Consensus       127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I          127 LSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             CCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             HHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence              0001122232 236889999999999976

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.31  E-value=4.7e-12  Score=99.04  Aligned_cols=102  Identities=12%  Similarity=0.023  Sum_probs=68.8

Q ss_pred             CeEEecCCcc-------------ccccchhhhccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGME-------------RVASITSSYYKFAEAAI-LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e-------------~~~~~~~~~~~~ad~ii-lv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.||||||..             .+..++..|++++++++ +|+|.++..+......|+..+..  .+.|+++|+||+|+
T Consensus       127 l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl  204 (299)
T 2aka_B          127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDL  204 (299)
T ss_dssp             EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGG
T ss_pred             ceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEcccc
Confidence            4799999963             45667888999998777 69999886555444345554432  47899999999999


Q ss_pred             CCCCCCCCHHHHHHHHHhc--CCCeEEEcccCCcchhhhHH
Q psy17235         67 EGTTPQVTEADMENFWSRR--SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        67 ~~~~~~v~~~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+ ......+.........  +...++++||++|.|+++.+
T Consensus       205 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~  244 (299)
T 2aka_B          205 MD-EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT  244 (299)
T ss_dssp             SC-TTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHH
T ss_pred             CC-CCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHH
Confidence            76 3332322222100111  22346789999999999873

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.31  E-value=3.9e-12  Score=103.43  Aligned_cols=98  Identities=10%  Similarity=0.032  Sum_probs=74.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEee-CCCCCCCCCCCCH--H
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN-KSDLEGTTPQVTE--A   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgn-K~Dl~~~~~~v~~--~   76 (170)
                      +.||||||++.|......+++.+|++|+|+| + ...+...+.|+..+...  ++|. +++.| |+|+ + ...+..  +
T Consensus        62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~-~~~~~~~~~  135 (370)
T 2elf_A           62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-H-MHAIDELKA  135 (370)
T ss_dssp             EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-C-HHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-C-HHHHHHHHH
Confidence            4799999999998888888999999999999 4 45566666776665544  5676 88888 9999 5 433332  5


Q ss_pred             HHHHHHHhcCC--CeEEE--cccCC---cchhhhH
Q psy17235         77 DMENFWSRRSS--RRFKP--QEVVE---PQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~--~~~~e--~Sa~~---~~~v~~~  104 (170)
                      +..++.+..+.  ..+++  +||++   +.|+++.
T Consensus       136 ~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L  170 (370)
T 2elf_A          136 KLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL  170 (370)
T ss_dssp             HHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred             HHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence            66667766543  36788  99999   9999875

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.31  E-value=3.4e-12  Score=107.07  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=73.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC--CCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP--QVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--~v~~   75 (170)
                      +.||||||++.|...+..++..+|++|+|+|.++   +++++.+.    .+..  .++|+++|+||+|+.+ ..  ....
T Consensus        75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~-~~~~~~~~  147 (482)
T 1wb1_A           75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAG-TEEIKRTE  147 (482)
T ss_dssp             EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSC-HHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCccc-chhHHHHH
Confidence            4799999999999988999999999999999998   66665543    2222  3688999999999875 21  1223


Q ss_pred             HHHHHHHHhc-CC--CeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRR-SS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~-~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...+++.. +.  ..++++||++|.|+++.
T Consensus       148 ~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L  179 (482)
T 1wb1_A          148 MIMKSILQSTHNLKNSSIIPISAKTGFGVDEL  179 (482)
T ss_dssp             HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred             HHHHHHHhhhcccccceEEEEECcCCCCHHHH
Confidence            4555666555 22  35788999999999865

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.30  E-value=2e-12  Score=111.31  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=70.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHHHHHHHHHH--HHhhCCCCeEEEEeeCCCCCCCCCCCC-
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFHVLSQHLLE--IVTYAENAKIFLCGNKSDLEGTTPQVT-   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~~~~~~~~~--i~~~~~~~pvvlvgnK~Dl~~~~~~v~-   74 (170)
                      +.||||||++.|...+..+++++|++|+|+|.++..   +|.....+...  +.......|+|||+||+|+.+ .+... 
T Consensus       247 ~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~-~~~~~~  325 (611)
T 3izq_1          247 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQRF  325 (611)
T ss_dssp             EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT-TCHHHH
T ss_pred             EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc-hhHHHH
Confidence            479999999999999999999999999999998742   11111111111  111113345999999999876 33322 


Q ss_pred             ---HHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         75 ---EADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ---~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                         .++...+....|.    ..|+++||++|.||.+.
T Consensus       326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence               2344455555554    36889999999999853

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.30  E-value=3.1e-12  Score=100.31  Aligned_cols=100  Identities=6%  Similarity=0.007  Sum_probs=70.5

Q ss_pred             ecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHH---HHH-hh--CCCCeEEEEeeC-CCCCCCCCCCCHHH
Q psy17235          5 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL---EIV-TY--AENAKIFLCGNK-SDLEGTTPQVTEAD   77 (170)
Q Consensus         5 Dt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~---~i~-~~--~~~~pvvlvgnK-~Dl~~~~~~v~~~~   77 (170)
                      |.+||+.++.+|+.||.++||+|+|+|.+|++.++ .+..+.   .+. ..  ..++|++|.+|| .|+++   .++..+
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~E  268 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY  268 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHH
Confidence            35799999999999999999999999999998765 333333   222 11  268999999996 68865   666666


Q ss_pred             HHHHHHh---cCCCeEEEcccCCcchhhhH-HHHH
Q psy17235         78 MENFWSR---RSSRRFKPQEVVEPQEVVEA-EQVQ  108 (170)
Q Consensus        78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~-~~~~  108 (170)
                      ..+...-   ..-.++..|||.+|+|+.++ .|+.
T Consensus       269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~  303 (312)
T 3l2o_B          269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL  303 (312)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred             HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence            5443221   12346888999999999988 4444

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.29  E-value=1.6e-11  Score=104.00  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=55.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++..+......|. .+..  .++|+++|+||+|+..
T Consensus        84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~--~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL--RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT--TTCCEEEEEECTTSCC
T ss_pred             EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEeCCCCcc
Confidence            479999999999999999999999999999999988887766553 3333  3799999999999965

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.29  E-value=4.3e-12  Score=103.92  Aligned_cols=97  Identities=11%  Similarity=0.045  Sum_probs=71.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC--CCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ--VTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~--v~~~~   77 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++....+....| ..+..  .++| +++++||+|+.++...  ...++
T Consensus        68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~  144 (397)
T 1d2e_A           68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELE  144 (397)
T ss_dssp             EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHH
Confidence            47999999999988888999999999999999986544333333 33333  3688 6899999998741111  12356


Q ss_pred             HHHHHHhcCC----CeEEEcccCCcch
Q psy17235         78 MENFWSRRSS----RRFKPQEVVEPQE  100 (170)
Q Consensus        78 ~~~~a~~~~~----~~~~e~Sa~~~~~  100 (170)
                      +.++++.+++    ..|+++||++|.|
T Consensus       145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n  171 (397)
T 1d2e_A          145 IRELLTEFGYKGEETPIIVGSALCALE  171 (397)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred             HHHHHHHcCCCcccCcEEEeehhhccc
Confidence            7778888775    3688999999876

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.28  E-value=5.7e-12  Score=105.18  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             CeEEecCCccccccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.||||||+..+...+        ..+++++|++++|||.+++.+... ..|+..+    .+.|+++|+||+|+.. .+.
T Consensus       274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~-~~~  347 (462)
T 3geh_A          274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVE-KQL  347 (462)
T ss_dssp             EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSC-GGG
T ss_pred             EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCc-chh
Confidence            4699999986654332        336889999999999999888765 4555544    3579999999999976 444


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.  ....+.   +...++++||++|.|+++.
T Consensus       348 ~~--~~~~~~---~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          348 IT--SLEYPE---NITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             ST--TCCCCT---TCCCEEEEBTTTTBSHHHH
T ss_pred             hH--HHHHhc---cCCcEEEEECCCCCCHHHH
Confidence            43  111111   2345889999999999976

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.27  E-value=1e-11  Score=98.21  Aligned_cols=99  Identities=17%  Similarity=0.064  Sum_probs=72.7

Q ss_pred             CeEEecCCcc---------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGME---------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e---------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.+|||||+.         .+......+++.+|++++|+|.++   +.....|+.+.... .+.|+++++||+|+.. .+
T Consensus        58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~-~~  132 (301)
T 1ega_A           58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQ-EK  132 (301)
T ss_dssp             EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCC-CH
T ss_pred             EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCc-cH
Confidence            4689999997         344556778899999999999987   33333454433322 4799999999999865 33


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....+....++..++...++++||+++.|+.+.
T Consensus       133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l  165 (301)
T 1ega_A          133 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTI  165 (301)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHH
Confidence            333455666777778767889999999999975

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.26  E-value=9.7e-12  Score=102.15  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VT   74 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~   74 (170)
                      +.||||||++.|.......+..+|++|+|+|.++    +++++.+..|.    .. ...|+++|+||+|+.+ ...  ..
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~-~~~~iivviNK~Dl~~-~~~~~~~  158 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----II-GQKNIIIAQNKIELVD-KEKALEN  158 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH-TCCCEEEEEECGGGSC-HHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc-CCCcEEEEEECccCCC-HHHHHHH
Confidence            4699999999998777777888999999999995    45666654332    22 2358999999999876 221  22


Q ss_pred             HHHHHHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235         75 EADMENFWSRR--SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        75 ~~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+....  ....++++||++|.|+++.
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L  190 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVL  190 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence            34555666542  2235788999999999865

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.24  E-value=9.5e-13  Score=106.69  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CeEEecCCc-------cccccchh-------hhccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhCC
Q psy17235          1 MQLWDTGGM-------ERVASITS-------SYYKFAEAA-----------ILVFSLDN-AASFHVLS-QHLLEIVTYAE   53 (170)
Q Consensus         1 l~iwDt~G~-------e~~~~~~~-------~~~~~ad~i-----------ilv~D~t~-~~Sf~~~~-~~~~~i~~~~~   53 (170)
                      ++||||||+       +.|..++.       .|+++++++           +++|++++ ..++..+. .|+..+   ..
T Consensus        97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~  173 (361)
T 2qag_A           97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HN  173 (361)
T ss_dssp             EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS
T ss_pred             eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---cc
Confidence            479999999       88888887       888776665           37777776 56666664 455443   36


Q ss_pred             CCeEEEEeeCCCCCCCCCCCCH--HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         54 NAKIFLCGNKSDLEGTTPQVTE--ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~~~~~~v~~--~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++|+|+|+||+|+.. .+.+..  +++..++..++++ |+++||+++.+ ++.
T Consensus       174 ~~piIlV~NK~Dl~~-~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~  223 (361)
T 2qag_A          174 KVNIVPVIAKADTLT-LKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DED  223 (361)
T ss_dssp             -SCEEEEEECCSSSC-HHHHHHHHHHHHHHTTCC-CC-SCCCC----------
T ss_pred             CCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chh
Confidence            799999999999987 556655  5788888888885 55899999988 555

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.24  E-value=3.6e-11  Score=92.55  Aligned_cols=103  Identities=19%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             CeEEecCCccccccc-----------hhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhC-CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASI-----------TSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYA-ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~-----------~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~   67 (170)
                      +.||||||+..+...           ...+++++|++|+|||+++.... ..+..|+.++.... ...++++++||+|+.
T Consensus        73 i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~  152 (260)
T 2xtp_A           73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN  152 (260)
T ss_dssp             EEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred             EEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence            469999998765322           23378999999999999863332 22334444432221 234455555599997


Q ss_pred             CCCCCCCH-------HHHHHHHHhcCCCe--E--EEcccCCcchhhhHH
Q psy17235         68 GTTPQVTE-------ADMENFWSRRSSRR--F--KPQEVVEPQEVVEAE  105 (170)
Q Consensus        68 ~~~~~v~~-------~~~~~~a~~~~~~~--~--~e~Sa~~~~~v~~~~  105 (170)
                      + . .+..       +++..++...+..+  |  +++||++|.|+.+.+
T Consensus       153 ~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~  199 (260)
T 2xtp_A          153 G-G-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELM  199 (260)
T ss_dssp             T-C-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred             C-c-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHH
Confidence            5 2 2222       34555777766532  3  678999999999873

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.23  E-value=5.7e-11  Score=96.36  Aligned_cols=101  Identities=18%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             CeEEecCCc---------cccccchhhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGM---------ERVASITSSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~---------e~~~~~~~~~~~~ad~iilv~D~t~~~--Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||+|.         +.|...+. .+..+|++++|+|++++.  +++.+..|...+.... .+.|+++|+||+|+.+
T Consensus       228 v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~  306 (364)
T 2qtf_A          228 IMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN  306 (364)
T ss_dssp             EEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred             EEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence            368999997         22333333 578999999999999987  6777767766655544 6899999999999865


Q ss_pred             CCCCCC--HHHHHHHHHhc-C-CCeEEEcccCCcchhhhH
Q psy17235         69 TTPQVT--EADMENFWSRR-S-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        69 ~~~~v~--~~~~~~~a~~~-~-~~~~~e~Sa~~~~~v~~~  104 (170)
                       .. +.  .+.+..+++.+ . .+.++++||+++.|+++.
T Consensus       307 -~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L  344 (364)
T 2qtf_A          307 -GD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELL  344 (364)
T ss_dssp             -SC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHH
T ss_pred             -ch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHH
Confidence             22 11  12333445555 2 235789999999999976

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.21  E-value=2.3e-11  Score=110.22  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC---CCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ---VTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~---v~~~   76 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++....+ ...|+..+...  ++| +||++||+|+.+ ...   ...+
T Consensus       361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~-d~e~le~i~e  436 (1289)
T 3avx_A          361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVD-DEELLELVEM  436 (1289)
T ss_dssp             EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCC-CHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccc-chhhHHHHHH
Confidence            479999999999988889999999999999999864433 33455444443  688 789999999975 222   1235


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCcc
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEPQ   99 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~~   99 (170)
                      ++..+++.+++    ..|+++||++|.
T Consensus       437 Ei~elLk~~G~~~~~vp~IpvSAktG~  463 (1289)
T 3avx_A          437 EVRELLSQYDFPGDDTPIVRGSALKAL  463 (1289)
T ss_dssp             HHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred             HHHHHHHhccccccceeEEEEEeccCC
Confidence            67778887774    358899999993

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.19  E-value=1.1e-10  Score=96.58  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=66.2

Q ss_pred             CeEEecCCccccccc-----------h-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASI-----------T-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~-----------~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||+|+.++..+           . ..+++.+|++++|+|.++..++... .+...+..  .+.|+++|+||+|+.+
T Consensus       230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~  306 (439)
T 1mky_A          230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVV  306 (439)
T ss_dssp             EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGST
T ss_pred             EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCC
Confidence            368999998543222           1 3467889999999999988777653 22222222  4799999999999976


Q ss_pred             CCCCCCHHHHH-HHHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235         69 TTPQVTEADME-NFWSRR---SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~~~~v~~~~~~-~~a~~~---~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.++.++.. .+.+.+   +...++++||++|.||++.+
T Consensus       307 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  346 (439)
T 1mky_A          307 -HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI  346 (439)
T ss_dssp             -TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHH
T ss_pred             -chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHH
Confidence             4555444433 222222   23357789999999999763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.17  E-value=4.9e-11  Score=90.74  Aligned_cols=93  Identities=14%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             CeEEecCC-----------ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGG-----------MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G-----------~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl   66 (170)
                      +.||||||           ++.+...+..+++++|++|+|+|+++..+-  ...|+..+....   ...|++||+||+|+
T Consensus        80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~  157 (239)
T 3lxx_A           80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDD  157 (239)
T ss_dssp             EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred             EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence            47999999           445566667778899999999999865442  123444433222   34699999999998


Q ss_pred             CCCCCCCC------HHHHHHHHHhcCCCeEEEcccCC
Q psy17235         67 EGTTPQVT------EADMENFWSRRSSRRFKPQEVVE   97 (170)
Q Consensus        67 ~~~~~~v~------~~~~~~~a~~~~~~~~~e~Sa~~   97 (170)
                      .. .+.+.      .+.++.+++..+.. |...+...
T Consensus       158 ~~-~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~  192 (239)
T 3lxx_A          158 LG-DTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKA  192 (239)
T ss_dssp             C-------------CHHHHHHHHHHSSS-EEECCTTC
T ss_pred             CC-cccHHHHHHhchHHHHHHHHHcCCE-EEEEECCC
Confidence            66 44443      34678888888875 44455543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.15  E-value=1.5e-10  Score=100.91  Aligned_cols=66  Identities=14%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CeEEecCCccc---cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMER---VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~---~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||...   ....+..|++++|++|+|+|.+++.+......|...+..  .+.|+++|+||+|+..
T Consensus       176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGG
T ss_pred             eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECccccc
Confidence            46899999654   345677889999999999999999888877767554433  3678999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.13  E-value=7e-11  Score=98.30  Aligned_cols=95  Identities=16%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             CeEEecCC--------ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGG--------MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G--------~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      ++||||||        ++.+...+..+++++|++|+|+|.++..+..  ..|+.++... .+.|++||+||+|+.. .+ 
T Consensus        73 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~~-~~-  147 (456)
T 4dcu_A           73 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNTE-MR-  147 (456)
T ss_dssp             CEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC--------
T ss_pred             EEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccchh-hh-
Confidence            57999999        8888889999999999999999987754433  3454444433 5899999999999865 21 


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                         .+..++. ..+....+++||++|.|+.+.
T Consensus       148 ---~~~~e~~-~lg~~~~~~iSA~~g~gv~~L  175 (456)
T 4dcu_A          148 ---ANIYDFY-SLGFGEPYPISGTHGLGLGDL  175 (456)
T ss_dssp             ------CCSG-GGSSSSEEECCTTTCTTHHHH
T ss_pred             ---hhHHHHH-HcCCCceEEeecccccchHHH
Confidence               1111121 345544568999999999975

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.10  E-value=1.8e-11  Score=105.01  Aligned_cols=96  Identities=16%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGT   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~   69 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++.          ++.+.+    ..+..  .++| +|||+||+|+.+ 
T Consensus       257 i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~--lgip~iIvviNKiDl~~-  329 (592)
T 3mca_A          257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA--LGISEIVVSVNKLDLMS-  329 (592)
T ss_dssp             --CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH--SSCCCEEEEEECGGGGT-
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH--cCCCeEEEEEecccccc-
Confidence            47899999999999999999999999999999853          333332    22222  2565 999999999864 


Q ss_pred             CCCC----CHHHHHHHH-HhcCCC----eEEEcccCCcchhhh
Q psy17235         70 TPQV----TEADMENFW-SRRSSR----RFKPQEVVEPQEVVE  103 (170)
Q Consensus        70 ~~~v----~~~~~~~~a-~~~~~~----~~~e~Sa~~~~~v~~  103 (170)
                      ...-    ...+...+. +..|+.    .|+++||++|.||.+
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e  372 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ  372 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence            1111    123444555 555663    588999999999983

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.07  E-value=7.4e-11  Score=95.23  Aligned_cols=100  Identities=16%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             CeEEecCCcccc-------------ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERV-------------ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~-------------~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl   66 (170)
                      ++||||||...+             ..+...|++++|++|+|+|.++.....  ..|+..+.... .+.|+++|+||+|+
T Consensus       138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl  215 (360)
T 3t34_A          138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDL  215 (360)
T ss_dssp             EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred             eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCcc
Confidence            479999998876             667889999999999999876654332  24544444443 46899999999999


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         67 EGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        67 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+ ......+.+..++..++.+ |+++|++++.++++.
T Consensus       216 ~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~  251 (360)
T 3t34_A          216 MD-KGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKN  251 (360)
T ss_dssp             CC-TTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTT
T ss_pred             CC-CcccHHHHHcCccccccCC-eEEEEECChHHhccC
Confidence            76 5555555555555556665 667899999988764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.06  E-value=2.5e-10  Score=96.70  Aligned_cols=98  Identities=12%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.||||||++.|...+..+++.+|++|+|+|.++...-.. ..++..+..  .++|+++++||+|+.. ..  ..+...+
T Consensus        84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~-~~--~~~~~~~  157 (529)
T 2h5e_A           84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI-RD--PMELLDE  157 (529)
T ss_dssp             EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC-SC--HHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc-cc--HHHHHHH
Confidence            4799999999999888899999999999999998644322 222222222  4799999999999976 22  2344555


Q ss_pred             HHHhcCCC----eEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSR----RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~----~~~e~Sa~~~~~v~~~  104 (170)
                      +...++..    .+..+|++++.|+.+.
T Consensus       158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl  185 (529)
T 2h5e_A          158 VENELKIGCAPITWPIGCGKLFKGVYHL  185 (529)
T ss_dssp             HHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred             HHHHhCCCccceecceecccCcceeeeh
Confidence            66666653    2455788888887654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=4e-10  Score=91.47  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             CccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HH
Q psy17235          8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WS   83 (170)
Q Consensus         8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~   83 (170)
                      .++.|.++++.+++.++++++|+|++|+.     ..|.+.+.+...+.|+++|+||+|+..  ..+..++..++    ++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~--~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIP--KSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSC--TTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCC--cccCHHHHHHHHHHHHH
Confidence            35778899999999999999999999864     467777777777899999999999965  23444444444    66


Q ss_pred             hcCCC--eEEEcccCCcchhhhH
Q psy17235         84 RRSSR--RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        84 ~~~~~--~~~e~Sa~~~~~v~~~  104 (170)
                      ..|..  .++.+||++|.|+++.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L  150 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAEL  150 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHH
Confidence            66763  5778999999999976

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.03  E-value=3.5e-10  Score=87.41  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             CeEEecCCccccccchhhhcc---------CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhC-CC--CeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYK---------FAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-EN--AKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~---------~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~-~~--~pvvlvgnK~Dl~   67 (170)
                      +.||||||++.|..+...+++         ++|++++|+|++... +... ..|+..+.... .+  .|+++|+||+|+.
T Consensus        86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A           86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence            479999999988777666665         889999999998765 4333 46777776654 22  4999999999996


Q ss_pred             CCCCCCCHH
Q psy17235         68 GTTPQVTEA   76 (170)
Q Consensus        68 ~~~~~v~~~   76 (170)
                      . .+..+.+
T Consensus       165 ~-~~~~~~e  172 (262)
T 3def_A          165 P-PDELSYE  172 (262)
T ss_dssp             C-STTCCHH
T ss_pred             C-CCCccHH
Confidence            5 3444433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.99  E-value=1.4e-09  Score=80.41  Aligned_cols=98  Identities=9%  Similarity=0.068  Sum_probs=67.5

Q ss_pred             eEEecCCccc----------cccchhhhc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          2 QLWDTGGMER----------VASITSSYY---KFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         2 ~iwDt~G~e~----------~~~~~~~~~---~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      .+|||||+..          +......++   +.++++++|+|++++.++..  +..|+..     .++|+++++||+|+
T Consensus        75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~  149 (210)
T 1pui_A           75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK  149 (210)
T ss_dssp             EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG
T ss_pred             EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC
Confidence            6899999742          333334455   57899999999998776642  3344321     47899999999997


Q ss_pred             CCC-CCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         67 EGT-TPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        67 ~~~-~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      ... .++...+.+..++.+.+. ..++++||+++.++.+.
T Consensus       150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l  189 (210)
T 1pui_A          150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL  189 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence            641 122223556666666653 46889999999999976

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.98  E-value=1.7e-09  Score=93.98  Aligned_cols=64  Identities=14%  Similarity=0.060  Sum_probs=52.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      ++||||||++.|...+..+++.+|++++|+|.++..+.... .|+..+..  .++|+++++||+|+.
T Consensus        76 ~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           76 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             EEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence            47999999999999999999999999999999876554433 44444444  379999999999985

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.97  E-value=1.4e-09  Score=85.61  Aligned_cols=97  Identities=15%  Similarity=0.077  Sum_probs=57.5

Q ss_pred             CeEEecCCccc-------------cccchhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMER-------------VASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~-------------~~~~~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.||||||...             +..++..+++++|++++|+|.++.... .....+...+..  .+.|+++|+||+|+
T Consensus       133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl  210 (315)
T 1jwy_B          133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDL  210 (315)
T ss_dssp             EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTS
T ss_pred             cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCccc
Confidence            46899999753             556778899999999999997543211 111122222221  47899999999998


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchh
Q psy17235         67 EGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEV  101 (170)
Q Consensus        67 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v  101 (170)
                      .. ......+.........+ ..|+++|+.++.++
T Consensus       211 ~~-~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~  243 (315)
T 1jwy_B          211 MD-KGTDAMEVLTGRVIPLT-LGFIGVINRSQEDI  243 (315)
T ss_dssp             SC-SSCCCHHHHTTSSSCCT-TCEEECCCCCHHHH
T ss_pred             CC-cchHHHHHHhCCCccCC-CCeEEEecCChhhh
Confidence            76 33322222221001111 34667777776553

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.93  E-value=6.6e-10  Score=98.79  Aligned_cols=74  Identities=19%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      ++||||||+..|...+..+++.+|++|+|||.++..+++....|.... .  .++|+++++||+|+......+++++
T Consensus       100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~~e~~~~~~e  173 (842)
T 1n0u_A          100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRALLELQVSKED  173 (842)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred             EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcchhhhccCHHH
Confidence            479999999999999999999999999999999999998877675433 2  4799999999999863234455544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=2.1e-09  Score=87.23  Aligned_cols=90  Identities=11%  Similarity=0.089  Sum_probs=69.7

Q ss_pred             CccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HH
Q psy17235          8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WS   83 (170)
Q Consensus         8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~   83 (170)
                      .++.|.++.+.++++++++++|+|++++.+     .|.+++.+...+.|+++|+||+|+..  ..+..+...++    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~--~~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLP--RSVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSC--TTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCC--CccCHHHHHHHHHHHHH
Confidence            478899999999999999999999999875     56666666667899999999999865  23344444433    56


Q ss_pred             hcCC--CeEEEcccCCcchhhhH
Q psy17235         84 RRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        84 ~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      ..|.  ..++.+||++|.|+++.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L  152 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKV  152 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHH
Confidence            6676  35778999999999975

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.88  E-value=1.8e-09  Score=94.23  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..|...+..+++.+|++|+|+|.++..++.....|.. +..  .++|+++|+||+|+..
T Consensus        77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            4799999999999999999999999999999999888877766643 333  3799999999999876

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.87  E-value=1.4e-09  Score=87.67  Aligned_cols=102  Identities=14%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CeEEecCCcc-------------ccccchhhhccCCcEEEEEE-eCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGME-------------RVASITSSYYKFAEAAILVF-SLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e-------------~~~~~~~~~~~~ad~iilv~-D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.||||||..             .+..+...|+++++.+++++ |.+....-.....++..+..  .+.|+++|+||+|+
T Consensus       132 l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl  209 (353)
T 2x2e_A          132 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDL  209 (353)
T ss_dssp             EEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGG
T ss_pred             cEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccc
Confidence            4699999963             45567788888777666655 44432111112223333322  47899999999998


Q ss_pred             CCCCCCCCHHHHHH--HHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         67 EGTTPQVTEADMEN--FWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        67 ~~~~~~v~~~~~~~--~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .+ ......+....  +....+...++.+||+++.|+++.+
T Consensus       210 ~~-~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~  249 (353)
T 2x2e_A          210 MD-EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT  249 (353)
T ss_dssp             SC-TTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred             cC-cchhHHHHHhCCcccccCCceEEEeCCcccccccccHH
Confidence            76 32211111110  0111233346679999999999873

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.86  E-value=1.2e-08  Score=84.04  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             CeEEecCCccc----cccchhhh---ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCC
Q psy17235          1 MQLWDTGGMER----VASITSSY---YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTT   70 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~~~---~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~   70 (170)
                      +.+||++|...    +..+...+   ...++.++.++|++ +.++..+..|..++..+.   .+.|.+||+||+|+.. .
T Consensus       207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~-~  284 (416)
T 1udx_A          207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE-E  284 (416)
T ss_dssp             EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-H
T ss_pred             EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh-H
Confidence            46899999743    23343333   34799999999998 778888888888877664   3688999999999876 2


Q ss_pred             CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                        ...++..+..+..+.+ ++.+||+++.|+++.
T Consensus       285 --~~~~~l~~~l~~~g~~-vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          285 --EAVKALADALAREGLA-VLPVSALTGAGLPAL  315 (416)
T ss_dssp             --HHHHHHHHHHHTTTSC-EEECCTTTCTTHHHH
T ss_pred             --HHHHHHHHHHHhcCCe-EEEEECCCccCHHHH
Confidence              2234444555555654 678999999999976

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.85  E-value=5.2e-09  Score=81.10  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=51.2

Q ss_pred             CeEEecCCccccccchhh---------hccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCC-C--CeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSS---------YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAE-N--AKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~---------~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~-~--~pvvlvgnK~Dl~   67 (170)
                      +.||||||++.+..+...         +.+++|++++|||++.. ++... ..|+..+..... +  .|+++|+||+|+.
T Consensus        89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~  167 (270)
T 1h65_A           89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS  167 (270)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence            479999999877544332         13479999999999764 44433 478877766542 2  6999999999997


Q ss_pred             CCCCCCCH
Q psy17235         68 GTTPQVTE   75 (170)
Q Consensus        68 ~~~~~v~~   75 (170)
                      . ...++.
T Consensus       168 ~-~~~~~~  174 (270)
T 1h65_A          168 P-PDGLPY  174 (270)
T ss_dssp             C-GGGCCH
T ss_pred             C-cCCCCH
Confidence            6 444333

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.85  E-value=1.9e-09  Score=94.03  Aligned_cols=65  Identities=17%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..|...+..+++.+|++|+|+|.++..++.....|.. +..  .++|+++|+||+|+..
T Consensus        79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            4799999999999999999999999999999999988887776653 333  3799999999999876

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.82  E-value=2.2e-09  Score=83.41  Aligned_cols=99  Identities=8%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             CeEEecCCcc-------ccccch-------hhhccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q psy17235          1 MQLWDTGGME-------RVASIT-------SSYYKF-------------AEAAILVFSLDNAASFHVLSQHLLEIVTYAE   53 (170)
Q Consensus         1 l~iwDt~G~e-------~~~~~~-------~~~~~~-------------ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~   53 (170)
                      +.||||||..       .+..+.       ..|+..             +|+++++++.+.......-..++..+..   
T Consensus        67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---  143 (274)
T 3t5d_A           67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---  143 (274)
T ss_dssp             EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---
T ss_pred             EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---
Confidence            4799999973       233333       444443             7899999987763222222345555443   


Q ss_pred             CCeEEEEeeCCCCCCCCCCCC--HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         54 NAKIFLCGNKSDLEGTTPQVT--EADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~~~~~~v~--~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++|+|+|+||+|+.. ...+.  .+...+.....+++ ++.+||+++.++.+.
T Consensus       144 ~~pvi~V~nK~D~~~-~~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l  194 (274)
T 3t5d_A          144 KVNIIPLIAKADTLT-PEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKL  194 (274)
T ss_dssp             TSCEEEEESSGGGSC-HHHHHHHHHHHHHHHHHTTCC-CCCC-----------
T ss_pred             cCCEEEEEeccCCCC-HHHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHH
Confidence            799999999999754 22221  12344455566776 556799999998875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.81  E-value=8.3e-09  Score=78.99  Aligned_cols=99  Identities=12%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             CeEEecCCccccccchh------hhccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITS------SYYKFAEAAILVFSLDNAA---SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~------~~~~~ad~iilv~D~t~~~---Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.||||||+..+.....      .++.. +++++++|.+...   ++.....+..... ...+.|+++|+||+|+.. ..
T Consensus       111 ~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~-~~  187 (262)
T 1yrb_A          111 YVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLS-EE  187 (262)
T ss_dssp             EEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCC-HH
T ss_pred             EEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecccccc-cc
Confidence            35899999977544332      14466 8888888875433   3332222211111 114689999999999865 22


Q ss_pred             CCCHHHHHH----------------------------HHHhcCCC-eEEEcccCCcchhhhH
Q psy17235         72 QVTEADMEN----------------------------FWSRRSSR-RFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~----------------------------~a~~~~~~-~~~e~Sa~~~~~v~~~  104 (170)
                      .+  ++..+                            ++.+++.. .++++||+++.|+++.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l  247 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL  247 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence            21  11111                            12444432 5788999999999976

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.80  E-value=7.8e-10  Score=87.42  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=54.5

Q ss_pred             CeEEecCCc-------cccccchh-------hhccCCc-------------EEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q psy17235          1 MQLWDTGGM-------ERVASITS-------SYYKFAE-------------AAILVFSLDNAASFHVLSQHLLEIVTYAE   53 (170)
Q Consensus         1 l~iwDt~G~-------e~~~~~~~-------~~~~~ad-------------~iilv~D~t~~~Sf~~~~~~~~~i~~~~~   53 (170)
                      +++|||+|+       +.+..+..       .|+++.+             +++++.+.+. .+|+.+.  ...+....+
T Consensus        78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~  154 (301)
T 2qnr_A           78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHN  154 (301)
T ss_dssp             EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTT
T ss_pred             cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHh
Confidence            479999998       66766665       6665443             3444433322 2344433  122333335


Q ss_pred             CCeEEEEeeCCCCCCCCCC--CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         54 NAKIFLCGNKSDLEGTTPQ--VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~~~~~~--v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++|+++|+||.|+.. .+.  +..+++.++++.++++ |+++||+++ |++++
T Consensus       155 ~~~iilV~~K~Dl~~-~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~  204 (301)
T 2qnr_A          155 KVNIVPVIAKADTLT-LKERERLKKRILDEIEEHNIK-IYHLPDAES-DEDED  204 (301)
T ss_dssp             TSCEEEEECCGGGSC-HHHHHHHHHHHHHHHHHTTCC-CCCCC----------
T ss_pred             cCCEEEEEEeCCCCC-HHHHHHHHHHHHHHHHHcCCe-EEecCCccc-cccHH
Confidence            789999999999876 433  3456888999999985 668999999 99987

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.74  E-value=2.1e-08  Score=87.62  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||+..|...+..+++.+|++|+|+|.++..+......|. ....  .++|+++++||+|+..
T Consensus        84 i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCccc
Confidence            479999999999999999999999999999999887766655553 2222  3799999999999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.71  E-value=1.2e-08  Score=76.12  Aligned_cols=91  Identities=10%  Similarity=-0.037  Sum_probs=61.6

Q ss_pred             eEEecCCccccccchhhh-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSY-YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~-~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      .+|||+|+-.    .+.+ ...++++++|+|.++....  ...+...     .+.|+++|+||+|+.+ .+.+..++...
T Consensus       112 iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~-----~~~~~iiv~NK~Dl~~-~~~~~~~~~~~  179 (221)
T 2wsm_A          112 LLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI-----FRVADLIVINKVALAE-AVGADVEKMKA  179 (221)
T ss_dssp             EEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH-----HHTCSEEEEECGGGHH-HHTCCHHHHHH
T ss_pred             EEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh-----hhcCCEEEEecccCCc-chhhHHHHHHH
Confidence            4899998611    1222 2367899999998875431  1112111     1478999999999865 33456777777


Q ss_pred             HHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+. ..++++||++|.|+++.
T Consensus       180 ~~~~~~~~~~i~~~Sa~~g~gi~~l  204 (221)
T 2wsm_A          180 DAKLINPRAKIIEMDLKTGKGFEEW  204 (221)
T ss_dssp             HHHHHCTTSEEEECBTTTTBTHHHH
T ss_pred             HHHHhCCCCeEEEeecCCCCCHHHH
Confidence            7776642 46789999999999976

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.70  E-value=5.9e-08  Score=77.81  Aligned_cols=94  Identities=12%  Similarity=0.085  Sum_probs=55.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH--HHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE--ADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~--~~~   78 (170)
                      +.||||||.....   ....+.+|++++|+|.++...+..+...   .    .+.|.++|+||+|+.+ ...+..  ++.
T Consensus       151 i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~-~~~~~~~~~~l  219 (341)
T 2p67_A          151 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDN-HTNVAIARHMY  219 (341)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTC-HHHHHHHHHHH
T ss_pred             EEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCC-hHHHHHHHHHH
Confidence            3689999965432   2346899999999999765443222111   1    1468899999999865 211111  122


Q ss_pred             HHHHHhcC------CCeEEEcccCCcchhhhHH
Q psy17235         79 ENFWSRRS------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        79 ~~~a~~~~------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .......+      .+.++.+||++|.|+++..
T Consensus       220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~  252 (341)
T 2p67_A          220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIW  252 (341)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred             HHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence            22222222      3567899999999999873

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.66  E-value=5.9e-08  Score=78.16  Aligned_cols=92  Identities=12%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +.||||||..   .........+|++++|+|.+..+.+..+..+       ..+.|+++|+||+|+.. ..... ....+
T Consensus       174 ~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~-~~~~~-~~~~~  241 (355)
T 3p32_A          174 VILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEH-HKEAR-LAARE  241 (355)
T ss_dssp             EEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGG-HHHHH-HHHHH
T ss_pred             EEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcC-hhHHH-HHHHH
Confidence            3689999942   2233446899999999998776655333211       12469999999999854 11111 11122


Q ss_pred             HHHh---c-----C-CCeEEEcccCCcchhhhH
Q psy17235         81 FWSR---R-----S-SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~---~-----~-~~~~~e~Sa~~~~~v~~~  104 (170)
                      +...   .     + .+.++.+||++|.|+++.
T Consensus       242 l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L  274 (355)
T 3p32_A          242 LSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL  274 (355)
T ss_dssp             HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred             HHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence            2222   1     1 134778999999999987

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.65  E-value=1e-08  Score=84.46  Aligned_cols=99  Identities=9%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             CeEEecCCccccc-------c------------------chhhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhCC
Q psy17235          1 MQLWDTGGMERVA-------S------------------ITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAE   53 (170)
Q Consensus         1 l~iwDt~G~e~~~-------~------------------~~~~~~~~ad~iilv~D~t~~-~Sf~~~~-~~~~~i~~~~~   53 (170)
                      +++|||+|...+.       .                  +...+++++++.+++|+.+.. .+|..+. .|+..+.   .
T Consensus        90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~  166 (418)
T 2qag_C           90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E  166 (418)
T ss_dssp             EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T
T ss_pred             eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c
Confidence            4699999986542       1                  223456677766666666543 4555553 5776664   4


Q ss_pred             CCeEEEEeeCCCCCCCCCCCCH--HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         54 NAKIFLCGNKSDLEGTTPQVTE--ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~~~~~~v~~--~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++|+|+|+||+|+.. .+.+..  +++..++..+++++ +++|++++.++.++
T Consensus       167 ~v~iIlVinK~Dll~-~~ev~~~k~~i~~~~~~~~i~~-~~~sa~~~~~v~~~  217 (418)
T 2qag_C          167 KVNIIPLIAKADTLT-PEECQQFKKQIMKEIQEHKIKI-YEFPETDDEEENKL  217 (418)
T ss_dssp             TSEEEEEEESTTSSC-HHHHHHHHHHHHHHHHHHTCCC-CCCC----------
T ss_pred             cCcEEEEEEcccCcc-HHHHHHHHHHHHHHHHHcCCeE-EeCCCCCCcCHHHH
Confidence            799999999999876 566665  67888888888864 47899999888764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.60  E-value=4e-08  Score=80.47  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             CeEEecCCccc----cccchh---hhccCCcEEEEEEeCCCh
Q psy17235          1 MQLWDTGGMER----VASITS---SYYKFAEAAILVFSLDNA   35 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~---~~~~~ad~iilv~D~t~~   35 (170)
                      ++||||||+..    +..+..   .+++++|++++|+|.++.
T Consensus        73 i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           73 VKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            46999999854    333443   457899999999999886

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.59  E-value=2e-08  Score=85.41  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=53.4

Q ss_pred             CeEEecCCccc-----------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMER-----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~-----------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.||||||...           |..++..++..+|++|+|+|.++.........|+..+...  +.|+++|+||+|+.+
T Consensus       156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE  232 (550)
T ss_dssp             CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred             EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence            57999999865           5567778899999999999999876666666777665443  589999999999865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.33  E-value=1.4e-05  Score=64.26  Aligned_cols=92  Identities=11%  Similarity=0.032  Sum_probs=52.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      .|+||+|..   .........+|++++|+|.++......+..   .+    -..|.++|.||+|+.+ .... ......+
T Consensus       170 iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~-~~~~-~~~~~~l  237 (349)
T 2www_A          170 ILIETVGVG---QSEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDL-IVPA-RRIQAEY  237 (349)
T ss_dssp             EEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGG-HHHH-HHHHHHH
T ss_pred             EEEECCCcc---hhhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCC-chhH-HHHHHHH
Confidence            589999952   123445789999999999987654332221   11    2468899999999853 1110 0112222


Q ss_pred             HHhc---------CCCeEEEcccCCcchhhhHH
Q psy17235         82 WSRR---------SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        82 a~~~---------~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ....         ..+.++.+||++|.|+++..
T Consensus       238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~  270 (349)
T 2www_A          238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMW  270 (349)
T ss_dssp             HHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred             HHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence            2111         12457789999999999873

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.33  E-value=1.1e-06  Score=68.62  Aligned_cols=88  Identities=14%  Similarity=0.079  Sum_probs=58.8

Q ss_pred             EEecCCcc-ccccchhhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          3 LWDTGGME-RVASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         3 iwDt~G~e-~~~~~~~~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |-+.|||. .........+.++|+++.|+|..+|.+..  .+..|+       .+.|+++|+||+|+.+      .+..+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~------~~~~~   69 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKAD------AAVTQ   69 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSC------HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCC------HHHHH
Confidence            44568875 33444556788999999999999998875  333343       5799999999999865      22233


Q ss_pred             H---HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 N---FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~---~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .   +.++.|.+ ++.+||+++.|+.+.
T Consensus        70 ~~~~~~~~~g~~-~i~iSA~~~~gi~~L   96 (282)
T 1puj_A           70 QWKEHFENQGIR-SLSINSVNGQGLNQI   96 (282)
T ss_dssp             HHHHHHHTTTCC-EEECCTTTCTTGGGH
T ss_pred             HHHHHHHhcCCc-EEEEECCCcccHHHH
Confidence            3   33344664 567899999999976

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.31  E-value=1.4e-09  Score=81.41  Aligned_cols=51  Identities=16%  Similarity=0.021  Sum_probs=39.9

Q ss_pred             CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhHH
Q psy17235         54 NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ..|.++|+||+|+.+ .+.+..+++..+++..+ ...++++||++|.|+++.+
T Consensus       164 ~~~~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  215 (226)
T 2hf9_A          164 KTADLIVINKIDLAD-AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVL  215 (226)
T ss_dssp             TTCSEEEEECGGGHH-HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHH
T ss_pred             hcCCEEEEeccccCc-hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHH
Confidence            356799999999875 44567788888887764 3468899999999999763

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.29  E-value=2.9e-06  Score=68.61  Aligned_cols=48  Identities=6%  Similarity=-0.038  Sum_probs=32.8

Q ss_pred             CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhh
Q psy17235         53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVV  102 (170)
Q Consensus        53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~  102 (170)
                      ...|+++++|+.|..- ....-......++...+.+ ++++||+....+.
T Consensus       198 t~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~-~i~~sA~~E~el~  245 (363)
T 1jal_A          198 TLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAV-VVPVCAAIESEIA  245 (363)
T ss_dssp             TTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCE-EEEECHHHHHHGG
T ss_pred             cCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCC-EEEechHHHHHHH
Confidence            3579999999999642 2233456677888888874 6678887554443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.15  E-value=5.5e-06  Score=67.11  Aligned_cols=50  Identities=6%  Similarity=-0.019  Sum_probs=35.5

Q ss_pred             CCeEEEEeeCCCCC--CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         54 NAKIFLCGNKSDLE--GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        54 ~~pvvlvgnK~Dl~--~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..|+++++||.|..  +..+......+..+++..|. .++++||+...++.+.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~-~vv~iSAk~E~el~eL  252 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGA-EVVVVSARLEAELAEL  252 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTC-EEEEECHHHHHHHHTS
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCC-eEEEeechhHHHHHHh
Confidence            46999999999842  20113445678888888886 4678899988777654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.10  E-value=9.8e-06  Score=71.24  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=60.7

Q ss_pred             CeEEecCCccc-------------cccchhhhc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMER-------------VASITSSYY-KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~-------------~~~~~~~~~-~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.|+||||-..             +..+...|+ ..+|++++|.|.++..+-.....++..+..  .+.|+++|.||+|+
T Consensus       152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDl  229 (772)
T 3zvr_A          152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDL  229 (772)
T ss_dssp             EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTS
T ss_pred             eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCccc
Confidence            35899999432             233445555 478999999999875433332233333332  36899999999998


Q ss_pred             CCCCCCCCHHHHHHHHHh----cCCCeEEEcccCCcchhhhH
Q psy17235         67 EGTTPQVTEADMENFWSR----RSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        67 ~~~~~~v~~~~~~~~a~~----~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+ ........ .. .+.    .+...++..||++|.|+++.
T Consensus       230 v~-~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL  268 (772)
T 3zvr_A          230 MD-EGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDI  268 (772)
T ss_dssp             SC-TTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred             CC-cchhhHHH-HH-HHhhhhhccCCceEEecccccccchhH
Confidence            76 33322211 11 111    13234556799999999886

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.00  E-value=1.2e-05  Score=68.33  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.|.||||+..|..-....++-+||+|+|+|...----+...-|. ....+  ++|.+++.||+|...
T Consensus       102 iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~--~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          102 VNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR--ATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh--CCceEEEEecccchh
Confidence            478999999999998888899999999999998865555545553 33333  799999999999876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.95  E-value=0.00011  Score=58.61  Aligned_cols=93  Identities=8%  Similarity=0.071  Sum_probs=53.4

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      .|+||+|...-   .......+|.+++|+|.+..+..+.+..++.       ..|.+++.||+|+.. ....+....+.+
T Consensus       151 iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~-------~~~~ivvlNK~Dl~~-~~~~s~~~~~~l  219 (337)
T 2qm8_A          151 ILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGD-GERRASAAASEY  219 (337)
T ss_dssp             EEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTC-CHHHHHHHHHHH
T ss_pred             EEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHHh-------ccccEEEEEchhccC-chhHHHHHHHHH
Confidence            58999996421   1234578999999999865443222211111       245677779999743 222222233344


Q ss_pred             HHhc---C------CCeEEEcccCCcchhhhHH
Q psy17235         82 WSRR---S------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        82 a~~~---~------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ....   +      .+.++.+||+++.|+++..
T Consensus       220 ~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~  252 (337)
T 2qm8_A          220 RAALHILTPPSATWTPPVVTISGLHGKGLDSLW  252 (337)
T ss_dssp             HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred             HHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence            3321   1      2456679999999999863

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.81  E-value=2.7e-05  Score=68.05  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ++|.|||||-.|..-....++-+||+|+|+|...--.-+...-|... .++  ++|.+++.||+|...
T Consensus        87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred             EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence            46899999999988888889999999999999876544444444333 333  799999999999865

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.78  E-value=1.7e-05  Score=68.58  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      ++|.|||||..|..-....++-+||+|+|+|...--.-+...-| .....+  ++|.+++.||+|...
T Consensus        69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~--~lp~i~~INKmDr~~  133 (638)
T 3j25_A           69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM--GIPTIFFINKIDQNG  133 (638)
T ss_dssp             CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH--TCSCEECCEECCSSS
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc--CCCeEEEEecccccc
Confidence            57899999999999888899999999999999875333333334 333333  689999999999866

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.69  E-value=2.4e-05  Score=60.42  Aligned_cols=84  Identities=10%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             CCcccc-ccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235          7 GGMERV-ASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS   83 (170)
Q Consensus         7 ~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~   83 (170)
                      |||... .......+.++|+++.|+|..+|.+..+  +. |       . +.|.++|.||+|+.+ ...  .+....+.+
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l-~k~~iivlNK~DL~~-~~~--~~~~~~~~~   72 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S-RKETIILLNKVDIAD-EKT--TKKWVEFFK   72 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T-TSEEEEEEECGGGSC-HHH--HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c-CCCcEEEEECccCCC-HHH--HHHHHHHHH
Confidence            666532 2344566889999999999999987653  22 2       1 789999999999865 211  112223344


Q ss_pred             hcCCCeEEEcccCCcchhhhH
Q psy17235         84 RRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        84 ~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..|.+ + .+||+++.|+.+.
T Consensus        73 ~~g~~-v-~iSa~~~~gi~~L   91 (262)
T 3cnl_A           73 KQGKR-V-ITTHKGEPRKVLL   91 (262)
T ss_dssp             HTTCC-E-EECCTTSCHHHHH
T ss_pred             HcCCe-E-EEECCCCcCHHHH
Confidence            45666 4 7899999998864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.46  E-value=0.00019  Score=56.73  Aligned_cols=86  Identities=15%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             cchhhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH---hcCCCe
Q psy17235         14 SITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS---RRSSRR   89 (170)
Q Consensus        14 ~~~~~~~~~ad~iilv~D~t~~~S-f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~---~~~~~~   89 (170)
                      .+......++|.+++|+|..+|.+ ...+..++.....  .++|.+||.||+|+.+ ... ..+....+.+   ..|.+ 
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~-~~~-~~~~~~~~~~~y~~~g~~-  152 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIE-DQD-TEDTIQAYAEDYRNIGYD-  152 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCC-CHH-HHHHHHHHHHHHHHHTCC-
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCc-hhh-hHHHHHHHHHHHHhCCCe-
Confidence            344556789999999999998754 4444455433222  4789999999999976 211 0011333333   44664 


Q ss_pred             EEEcccCCcchhhhH
Q psy17235         90 FKPQEVVEPQEVVEA  104 (170)
Q Consensus        90 ~~e~Sa~~~~~v~~~  104 (170)
                      .+.+||.++.|+++.
T Consensus       153 v~~~sa~~~~g~~~L  167 (307)
T 1t9h_A          153 VYLTSSKDQDSLADI  167 (307)
T ss_dssp             EEECCHHHHTTCTTT
T ss_pred             EEEEecCCCCCHHHH
Confidence            556799988887753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.04  E-value=0.0028  Score=51.06  Aligned_cols=78  Identities=12%  Similarity=0.042  Sum_probs=50.8

Q ss_pred             ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH---hcCCCeEEEccc
Q psy17235         20 YKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS---RRSSRRFKPQEV   95 (170)
Q Consensus        20 ~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~---~~~~~~~~e~Sa   95 (170)
                      ..++|.+++|.+. +|. +...+..++.....  .++|.+||.||+|+.+ ..  ..+....+..   ..|.+ .+.+||
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~-~~--~~~~~~~~~~~y~~~G~~-v~~~Sa  200 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLD-DE--GMDFVNEQMDIYRNIGYR-VLMVSS  200 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCC-HH--HHHHHHHHHHHHHTTTCC-EEECBT
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCC-ch--hHHHHHHHHHHHHhCCCc-EEEEec
Confidence            5789999998775 454 44445555543322  3688899999999976 21  1111333333   45665 556899


Q ss_pred             CCcchhhhH
Q psy17235         96 VEPQEVVEA  104 (170)
Q Consensus        96 ~~~~~v~~~  104 (170)
                      .++.++.+.
T Consensus       201 ~~~~gl~~L  209 (358)
T 2rcn_A          201 HTQDGLKPL  209 (358)
T ss_dssp             TTTBTHHHH
T ss_pred             CCCcCHHHH
Confidence            999998875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.70  E-value=0.00055  Score=55.89  Aligned_cols=39  Identities=10%  Similarity=0.050  Sum_probs=23.0

Q ss_pred             CeEEecCCcccccc-------chhhhccCCcEEEEEEeCCChhhHH
Q psy17235          1 MQLWDTGGMERVAS-------ITSSYYKFAEAAILVFSLDNAASFH   39 (170)
Q Consensus         1 l~iwDt~G~e~~~~-------~~~~~~~~ad~iilv~D~t~~~Sf~   39 (170)
                      +++|||||+..+.+       .+..+++++|++++|+|+++..++.
T Consensus        88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~  133 (396)
T 2ohf_A           88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT  133 (396)
T ss_dssp             EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred             cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence            47999999887544       4567889999999999998766544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0076  Score=48.80  Aligned_cols=87  Identities=9%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             CeEEecCCccccc----cch---hhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---
Q psy17235          1 MQLWDTGGMERVA----SIT---SSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT---   69 (170)
Q Consensus         1 l~iwDt~G~e~~~----~~~---~~~~~~ad~iilv~D~t~~~S-f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---   69 (170)
                      +++.||||--.-.    .+.   -...+.+|++++|+|.++|.. ++.+...+..+.......|.+++.||.|..+-   
T Consensus       121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~  200 (376)
T 4a9a_A          121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISIT  200 (376)
T ss_dssp             EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEE
T ss_pred             EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhh
Confidence            4789999953211    121   234578999999999998743 33333333222111156788889999997431   


Q ss_pred             ----CCCCCHHHHHHHHHhcCC
Q psy17235         70 ----TPQVTEADMENFWSRRSS   87 (170)
Q Consensus        70 ----~~~v~~~~~~~~a~~~~~   87 (170)
                          ....+.++...+...+.+
T Consensus       201 ~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          201 NTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             ESSCCSSCCHHHHHHHHHHTTC
T ss_pred             cchhhhhccHHHHHHHHHHhcc
Confidence                234566777766666554

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=96.00  E-value=0.04  Score=44.27  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q psy17235        109 QEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKT  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  168 (170)
                      ..+...|..++.....++..|..+|+.+|++++.+-++.+.+++++....+++++..+.+
T Consensus       306 ~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~  365 (366)
T 3dyt_A          306 QNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV  365 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345578899999999999999999999999999999999999999999999999987643

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=95.51  E-value=0.09  Score=42.59  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235        109 QEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK  167 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  167 (170)
                      ..+...|..++.....++..|..+|+.+|++++.+-++.+.+..++..+.+.+|+..+.
T Consensus       326 ~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~  384 (386)
T 4akv_A          326 DGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD  384 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35678899999999999999999999999999999999999999999999999998764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.90  E-value=0.068  Score=38.40  Aligned_cols=81  Identities=9%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      -|.|||+.-  .......+..+|.++++...+. .+ ..+...++.+....   ++.++.+|.|+.|...   .. ..+.
T Consensus        79 viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~---~~-~~~~  150 (206)
T 4dzz_A           79 AIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA---TM-LNVL  150 (206)
T ss_dssp             EEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE---EE-EHHH
T ss_pred             EEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc---hH-HHHH
Confidence            478999865  3344556677999999998654 44 66766666665543   5678899999999533   22 2455


Q ss_pred             HHHHHhcCCCeE
Q psy17235         79 ENFWSRRSSRRF   90 (170)
Q Consensus        79 ~~~a~~~~~~~~   90 (170)
                      .++.+.++.+.+
T Consensus       151 ~~~l~~~~~~vl  162 (206)
T 4dzz_A          151 KESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHTCCBC
T ss_pred             HHHHHHcCCcee
Confidence            666666776533

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=93.07  E-value=0.63  Score=34.86  Aligned_cols=61  Identities=11%  Similarity=0.003  Sum_probs=44.7

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      -|+|+|+.-  .......+..+|.+|++... +..+...+...+..+.....+.++.+|.|+.+
T Consensus       148 viiD~pp~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          148 IVIDTNPSL--DVTLKNALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             EEEEECSSC--SHHHHHHHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             EEEECcCCc--cHHHHHHHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            478998754  23345556779999999986 45677777777777766656678889999994

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=91.70  E-value=1.1  Score=32.54  Aligned_cols=81  Identities=7%  Similarity=-0.014  Sum_probs=53.3

Q ss_pred             eEEecCCc-cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGM-ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~-e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      -|.|||+. ..  ......+..+|.+|++... +..++..+...+..+.... +.++.+|.|+.|... .  -...+..+
T Consensus        71 viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~-~--~~~~~~~~  143 (209)
T 3cwq_A           71 IVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG-NNRFRILLTIIPPYP-S--KDGDEARQ  143 (209)
T ss_dssp             EEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT-S--CHHHHHHH
T ss_pred             EEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc-c--hHHHHHHH
Confidence            47899886 32  2344567789999999875 4567777777776666532 567889999998532 0  22455556


Q ss_pred             HHHhcCCCe
Q psy17235         81 FWSRRSSRR   89 (170)
Q Consensus        81 ~a~~~~~~~   89 (170)
                      ..+++|.+.
T Consensus       144 ~l~~~g~~v  152 (209)
T 3cwq_A          144 LLTTAGLPL  152 (209)
T ss_dssp             HHHHTTCCB
T ss_pred             HHHHcCCch
Confidence            666677653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.69  E-value=0.16  Score=42.61  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=37.0

Q ss_pred             eEEecCCccccc-cchhh---h--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCC
Q psy17235          2 QLWDTGGMERVA-SITSS---Y--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEG   68 (170)
Q Consensus         2 ~iwDt~G~e~~~-~~~~~---~--~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~   68 (170)
                      .|+||||..... .++..   .  ...+|.+++|+|.+.......   ....+..   .+|+ ++|.||.|...
T Consensus       187 vIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~---~~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          187 IIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD---KVDVASVIVTKLDGHA  254 (504)
T ss_dssp             EEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH---HHCCCCEEEECTTSCC
T ss_pred             EEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh---hcCceEEEEeCCcccc
Confidence            589999975321 11111   1  237899999999987544211   1222222   2675 78899999864

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.49  E-value=1.9  Score=31.47  Aligned_cols=81  Identities=14%  Similarity=0.063  Sum_probs=54.9

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      -|.|+|+.-  .......+..+|.++++... +..++..+...++.+.... +..++-+|.|+.+...   ....+   .
T Consensus       122 viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~---~~~~~---~  192 (245)
T 3ea0_A          122 IIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS---RITSD---E  192 (245)
T ss_dssp             EEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT---TSCHH---H
T ss_pred             EEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC---CCCHH---H
Confidence            478998754  23445567789999999875 4778888888888777654 3455778899998644   34443   3


Q ss_pred             HHHhcCCCeEE
Q psy17235         81 FWSRRSSRRFK   91 (170)
Q Consensus        81 ~a~~~~~~~~~   91 (170)
                      +.+.++.+.+.
T Consensus       193 ~~~~~~~~v~~  203 (245)
T 3ea0_A          193 IEKVIGRPISK  203 (245)
T ss_dssp             HHHHHTSCEEE
T ss_pred             HHHHhCCCeEE
Confidence            45556776553

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=89.83  E-value=2  Score=33.24  Aligned_cols=88  Identities=10%  Similarity=-0.059  Sum_probs=51.8

Q ss_pred             eEEecCCccc--cc-cchh-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC
Q psy17235          2 QLWDTGGMER--VA-SITS-----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         2 ~iwDt~G~e~--~~-~~~~-----~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~   72 (170)
                      -|.||||...  .. .+..     .....+|.+++|.|.+....   .......+..   ..| ..+|.||.|...    
T Consensus       184 ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~---~~~i~gvVlnk~D~~~----  253 (297)
T 1j8m_F          184 IIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ---ASKIGTIIITKMDGTA----  253 (297)
T ss_dssp             EEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH---TCTTEEEEEECGGGCT----
T ss_pred             EEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh---hCCCCEEEEeCCCCCc----
Confidence            4799999765  21 1111     12447899999999864322   1122222222   356 567889999643    


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVE  103 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~  103 (170)
                       ....+..++...+.|..+..   +|+++++
T Consensus       254 -~~g~~~~~~~~~~~pi~~i~---~Ge~v~d  280 (297)
T 1j8m_F          254 -KGGGALSAVAATGATIKFIG---TGEKIDE  280 (297)
T ss_dssp             -THHHHHHHHHTTTCCEEEEE---CSSSTTC
T ss_pred             -chHHHHHHHHHHCcCEEEEe---CCCChhh
Confidence             12345567777888765543   5666654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=88.35  E-value=1.9  Score=32.03  Aligned_cols=81  Identities=9%  Similarity=0.024  Sum_probs=47.8

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---Hhh-CCCCeEE-EEeeCCCCCCCCCCCCHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI---VTY-AENAKIF-LCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i---~~~-~~~~pvv-lvgnK~Dl~~~~~~v~~~   76 (170)
                      -|.|||+.-..  .....+..+|.+|++...+ ..++..+...++.+   ... .++++++ +|.|+.|...   ....+
T Consensus       115 iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~---~~~~~  188 (257)
T 1wcv_1          115 VLLDAPPSLSP--LTLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT---LLAQQ  188 (257)
T ss_dssp             EEEECCSSCCH--HHHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC---SHHHH
T ss_pred             EEEeCCCCCCH--HHHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc---HHHHH
Confidence            47899876432  2334456799999999864 45555555444443   332 2577875 8999998543   22333


Q ss_pred             HHHHHHHhcCCC
Q psy17235         77 DMENFWSRRSSR   88 (170)
Q Consensus        77 ~~~~~a~~~~~~   88 (170)
                      ....+.+.++.+
T Consensus       189 ~~~~l~~~~~~~  200 (257)
T 1wcv_1          189 VEAQLRAHFGEK  200 (257)
T ss_dssp             HHHHHHHHHGGG
T ss_pred             HHHHHHHHcccc
Confidence            334444445544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=87.39  E-value=3.4  Score=33.95  Aligned_cols=90  Identities=11%  Similarity=-0.035  Sum_probs=50.3

Q ss_pred             eEEecCCcccccc-----chh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          2 QLWDTGGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         2 ~iwDt~G~e~~~~-----~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      -|.||+|.-....     +.. .....+|.+++|.|.+..++-..   ....+...  -.+..+|.||.|...     ..
T Consensus       186 VIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~~~-----~g  255 (443)
T 3dm5_A          186 IIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDGSA-----KG  255 (443)
T ss_dssp             EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSSCS-----SH
T ss_pred             EEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCCcc-----cc
Confidence            4889999533211     111 11336899999999876543222   22233322  123457899999754     11


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      -.+..+....+.|..+..   +|+++++.
T Consensus       256 G~~ls~~~~~g~PI~fig---~Ge~vddL  281 (443)
T 3dm5_A          256 GGALSAVAATGAPIKFIG---TGEKIDDI  281 (443)
T ss_dssp             HHHHHHHHTTCCCEEEEE---CSSSTTCE
T ss_pred             cHHHHHHHHHCCCEEEEE---cCCChHHh
Confidence            234455566788764433   37777653

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=86.41  E-value=1.8  Score=32.35  Aligned_cols=86  Identities=14%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCC----CCCCC-CH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEG----TTPQV-TE   75 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~----~~~~v-~~   75 (170)
                      -|.|||+.-....+....+..+|.+|+|...+ ..+...+...+..+...  +.|++ +|.|+.|...    ....+ ..
T Consensus       132 ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~  208 (262)
T 2ph1_A          132 LLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKSYIFGE  208 (262)
T ss_dssp             EEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEECTTCC
T ss_pred             EEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC--CCCEEEEEECCCccCCcccccccccccc
Confidence            47899875432112222233689999998755 45666776666666543  56776 8999987421    01111 12


Q ss_pred             HHHHHHHHhcCCCeE
Q psy17235         76 ADMENFWSRRSSRRF   90 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~   90 (170)
                      .....+.+.++.+.+
T Consensus       209 ~~~~~~~~~~g~~~~  223 (262)
T 2ph1_A          209 GKGESLAKKYNIGFF  223 (262)
T ss_dssp             CCHHHHHHHTTCSEE
T ss_pred             cHHHHHHHHcCCCeE
Confidence            234556677787644

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=84.22  E-value=0.79  Score=37.71  Aligned_cols=82  Identities=10%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             eEEecCCccc--cccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC---------CCeEEEEee
Q psy17235          2 QLWDTGGMER--VASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE---------NAKIFLCGN   62 (170)
Q Consensus         2 ~iwDt~G~e~--~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~---------~~pvvlvgn   62 (170)
                      .+||..|++.  +...+        ..++..+.|.++|+|.++. +++....|+..+.....         +.|.++..|
T Consensus        90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r  168 (469)
T 1bif_A           90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  168 (469)
T ss_dssp             GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence            4789999843  33343        6677778999999999997 67777778777665431         334444556


Q ss_pred             CCCCCC---CCCCCCHHHH-HHHHHh
Q psy17235         63 KSDLEG---TTPQVTEADM-ENFWSR   84 (170)
Q Consensus        63 K~Dl~~---~~~~v~~~~~-~~~a~~   84 (170)
                      +.|...   +.+.++.+++ ..+++.
T Consensus       169 ~~~~~~~rp~~~~~~~e~~~~~~~~R  194 (469)
T 1bif_A          169 IVQVKLGSPDYVNRDSDEATEDFMRR  194 (469)
T ss_dssp             HHHHTTTSTTTTTSCHHHHHHHHHHH
T ss_pred             HHHhhhcCCcccCCCHHHHHHHHHHH
Confidence            655332   0233455555 455443

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=83.05  E-value=2.5  Score=31.07  Aligned_cols=62  Identities=16%  Similarity=0.042  Sum_probs=43.3

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-------CCCeEEEEeeCCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------ENAKIFLCGNKSDL   66 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-------~~~pvvlvgnK~Dl   66 (170)
                      -|.|+|+.-.  ......+..+|.+|++.+. +..++..+...+..+....       +..++-+|.|+.|.
T Consensus       117 viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          117 IVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             EEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             EEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            4789987533  3455667789999999874 4677777777766665432       22567789999984

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=83.03  E-value=4.5  Score=33.03  Aligned_cols=78  Identities=12%  Similarity=-0.005  Sum_probs=43.2

Q ss_pred             eEEecCCcccccc-----chh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC-e-EEEEeeCCCCCCCCCCC
Q psy17235          2 QLWDTGGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA-K-IFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         2 ~iwDt~G~e~~~~-----~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~-p-vvlvgnK~Dl~~~~~~v   73 (170)
                      -|.||||......     +.. .....+|.+++|.|.+....   .......+   .+.+ | ..+|.||.|... .  .
T Consensus       184 vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~~~-~--~  254 (432)
T 2v3c_C          184 LIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDGSA-K--G  254 (432)
T ss_dssp             EEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSSCS-T--T
T ss_pred             EEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCCcc-c--h
Confidence            4899999654211     110 11236899999999876542   11122222   2345 6 788999999743 1  1


Q ss_pred             CHHHHHHHHHhcCCCeE
Q psy17235         74 TEADMENFWSRRSSRRF   90 (170)
Q Consensus        74 ~~~~~~~~a~~~~~~~~   90 (170)
                        ..+..+....+.|..
T Consensus       255 --g~~l~~~~~~~~pi~  269 (432)
T 2v3c_C          255 --GGALSAVAETKAPIK  269 (432)
T ss_dssp             --HHHHHHHHHSSCCEE
T ss_pred             --HHHHHHHHHHCCCEE
Confidence              123345555666543

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=83.01  E-value=3.5  Score=31.21  Aligned_cols=80  Identities=9%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hCCCCeEE-EEeeCCCCCCCCCCCCHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YAENAKIF-LCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~~~~pvv-lvgnK~Dl~~~~~~v~~~   76 (170)
                      -|.|||+.-...  ....+..+|.+|++...+ ..++..+...+..+..    ..++++++ +|.|+.|...   ....+
T Consensus       158 IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~---~~~~~  231 (298)
T 2oze_A          158 IIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS---ATIKS  231 (298)
T ss_dssp             EEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC---HHHHH
T ss_pred             EEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc---HHHHH
Confidence            478998764322  233344699999998753 4566666555444433    22577855 8899998643   23344


Q ss_pred             HHHHHHHhcCC
Q psy17235         77 DMENFWSRRSS   87 (170)
Q Consensus        77 ~~~~~a~~~~~   87 (170)
                      ...++...++.
T Consensus       232 ~~~~~~~~~~~  242 (298)
T 2oze_A          232 NLEELYKQHKE  242 (298)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHhcc
Confidence            55666666664

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=82.96  E-value=6.7  Score=28.31  Aligned_cols=80  Identities=13%  Similarity=-0.088  Sum_probs=50.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|.|+|+.-.  ......+..+|.+|+|... +..++..+...+..+.+. ...++-+|.|+.+... .. ..   ...+
T Consensus       115 viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~-~~-~~---~~~~  185 (237)
T 1g3q_A          115 ILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSD-RD-IP---PEAA  185 (237)
T ss_dssp             EEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCT-TC-CC---HHHH
T ss_pred             EEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC-CCceEEEEEecCCccc-ch-hH---HHHH
Confidence            4789987533  3344567889999999875 456777777777666654 2234557899998654 22 22   2334


Q ss_pred             HHhcCCCeE
Q psy17235         82 WSRRSSRRF   90 (170)
Q Consensus        82 a~~~~~~~~   90 (170)
                      .+..+.+.+
T Consensus       186 ~~~~~~~~~  194 (237)
T 1g3q_A          186 EDVMEVPLL  194 (237)
T ss_dssp             HHHHCSCEE
T ss_pred             HHHhCccce
Confidence            445666543

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=82.92  E-value=3.6  Score=29.84  Aligned_cols=60  Identities=18%  Similarity=-0.001  Sum_probs=40.9

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD   65 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D   65 (170)
                      -|+|||+.-..  .....+..+|.+|++... +..++..+....+.+.... -..+.+|.|+.+
T Consensus       135 viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~-~~~~~~v~N~~~  194 (254)
T 3kjh_A          135 VVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG-IKKVRYVINKVR  194 (254)
T ss_dssp             EEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred             EEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC-CccEEEEEeCCC
Confidence            47899875432  445567889999999975 4667777766665444432 245678899997

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=82.15  E-value=6.4  Score=29.03  Aligned_cols=80  Identities=10%  Similarity=-0.042  Sum_probs=51.0

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF   81 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~   81 (170)
                      -|.|+|+.-.  ......+..+|.+|+|... +..+...+...+..+... ...++-+|.|+.|... ..    .....+
T Consensus       114 viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~-~~----~~~~~~  184 (263)
T 1hyq_A          114 LLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL-GTKVLGVVVNRITTLG-IE----MAKNEI  184 (263)
T ss_dssp             EEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTT-HH----HHHHHH
T ss_pred             EEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc-CCCeeEEEEccCCccc-cc----chHHHH
Confidence            4789987533  3334456789999999864 456777777776666655 2234558899998643 11    345556


Q ss_pred             HHhcCCCeE
Q psy17235         82 WSRRSSRRF   90 (170)
Q Consensus        82 a~~~~~~~~   90 (170)
                      .+..+.+.+
T Consensus       185 ~~~~~~~~~  193 (263)
T 1hyq_A          185 EAILEAKVI  193 (263)
T ss_dssp             HHHTTSCEE
T ss_pred             HHHhCCCeE
Confidence            666777644

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=80.35  E-value=0.99  Score=36.53  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=25.0

Q ss_pred             CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCC
Q psy17235          1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDN   34 (170)
Q Consensus         1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~   34 (170)
                      +.+||+||...       +......+++++|+++.|+|.++
T Consensus        87 i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             eEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36899999533       33344556789999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-08
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-07
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-07
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-06
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-06
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-06
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-06
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-05
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-05
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	2e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-04
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (112), Expect = 8e-08
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   +LV+ + N  SF  +   +  I  +A  + +  +
Sbjct: 57  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 116

Query: 60  CGNKSDLEGTTPQVTEADMENFWSR 84
            GNK D+        E   +     
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDY 141

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
            Q+WDT G ER   ITS+YY+ A  A+LV+ +    ++  + + L E+  +A  N  I L
Sbjct: 55  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114

Query: 60  CGNKSDLEGTTPQVTEADMENFW 82
            GNKSDL       T+       
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAE 137

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   ILV+ + +  +F ++            + A++ L
Sbjct: 53  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 112

Query: 60  CGNKSDL 66
            GNKSD+
Sbjct: 113 VGNKSDM 119

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  +IT++YY+ A   IL++ + N  SF+ +     +I TY+ +NA++ L
Sbjct: 56  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115

Query: 60  CGNKSDLEGTTPQVTEADMENFWSR 84
            GNK D+E      +E   +     
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHL 140

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV-TYAENAKIFL 59
           +Q+WDT G ER  +ITSSYY+ +   I+V+ + +  SF+ +   L EI           L
Sbjct: 57  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 116

Query: 60  CGNKSDLEGTTPQVTEADMENFW 82
            GNK DL+       +   E   
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFAD 139

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           + +WDT G ER  ++T SYY+ A+  ILV+ +    +F  L   L E+ TY     I   
Sbjct: 58  LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 117

Query: 61  GNKSDLEGTTPQVTEADMENFWSRR 85
              + ++    +V   +   F  + 
Sbjct: 118 LVGNKIDKENREVDRNEGLKFARKH 142

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
           +Q+WDT G ER  S+T +YY+ A A +L++ + N ASF  +   L EI  YA++    + 
Sbjct: 58  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117

Query: 61  GNKSDLEGTTPQVTEADMENF 81
                       V   D E  
Sbjct: 118 LGNKVDSAHERVVKREDGEKL 138

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +Q+WDT G ER  ++T SYY+ A  A++V+ +   ++++ LS  L +       N  I L
Sbjct: 55  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 114

Query: 60  CGNKSDLEGTTPQVTE 75
            GNK+DLE       E
Sbjct: 115 IGNKADLEAQRDVTYE 130

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-06
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
           +QLWDT G ER  S+  SY + + AA++V+ + N  SF   ++ + ++ T    +  I L
Sbjct: 51  LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 110

Query: 60  CGNKSDLEGTTPQVTEADME 79
            GNK+DL        E    
Sbjct: 111 VGNKTDLADKRQVSIEEGER 130

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
           +Q+WDT G ER  SIT SYY+ A A IL + +    SF  L + L EI  YA N  I  L
Sbjct: 56  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 115

Query: 60  CGNKSDLEGTTPQVTEADMENFWSR 84
            GNK DL        +   E   ++
Sbjct: 116 VGNKIDLAERREVSQQRAEEFSEAQ 140

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
           +Q+WDT G ER  S+T SYY+ A  A+LV+ + +  +++ L+  L +     ++N  I L
Sbjct: 56  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115

Query: 60  CGN 62
           CGN
Sbjct: 116 CGN 118

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 32/91 (35%)

Query: 77  DMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEA 136
           D +       + +    +  +  ++ +  +  +EA   +E ++ +  +EL    + R+  
Sbjct: 119 DYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILF 178

Query: 137 FKKNLMELAELEIKHAESQVNILKKCLAELK 167
              NL  L   E         I  +  A + 
Sbjct: 179 LVTNLQTLFATEQVFHNETAKIYSELEAIVD 209

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
           +QLWDT G ER  S+T+++++ A   +L+F L +  SF  +   + ++      EN  I 
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 59  LCGNKSDL 66
           L GNK+DL
Sbjct: 126 LIGNKADL 133

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 1   MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
           +++ DT G E+ AS+   Y K  +  ILV+SL N  SF  +     +I+     E   + 
Sbjct: 53  LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112

Query: 59  LCGNKSDLEGTTPQVTE 75
           L GNK DLE      + 
Sbjct: 113 LVGNKVDLESEREVSSS 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.91
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.83
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.71
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.67
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.56
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.5
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.5
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.5
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.4
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.3
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.28
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.25
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.21
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.16
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.08
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.06
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.04
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.97
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.85
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.82
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.56
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.49
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.47
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.46
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.46
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.26
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.16
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.03
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.75
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.51
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.26
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.8
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.63
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.89
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.86
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.58
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.82
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	86.57

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=170.18  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=88.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      |++|||+|++.|..+++.|++++|++|+|||++++.||+.+..|+.++....  +++|++|||||+|+.+ .++|+..++
T Consensus        50 l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~  128 (168)
T d2gjsa1          50 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEG  128 (168)
T ss_dssp             EEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             eeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhh-hcchhHHHH
Confidence            4799999999999999999999999999999999999999999999987765  6789999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++.++++ |++|||++|.||+++
T Consensus       129 ~~~~~~~~~~-~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1         129 RACAVVFDCK-FIETSAALHHNVQAL  153 (168)
T ss_dssp             HHHHHHHTSE-EEECBTTTTBSHHHH
T ss_pred             HHHHHhcCCE-EEEEeCCCCcCHHHH
Confidence            9999999985 778999999999976

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.9e-26  Score=166.74  Aligned_cols=102  Identities=21%  Similarity=0.350  Sum_probs=94.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..+++.|++++|++++|||++|+.||+++..|+.++.+..  .++|+||||||+|+.. .+.|+.+++
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~e~~  132 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQG  132 (169)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHH
T ss_pred             ccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh-hceeehhhH
Confidence            4799999999999999999999999999999999999999999999987764  6899999999999998 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcc-hhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQ-EVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~-~v~~~  104 (170)
                      .++|+.++++ |+++||+++. ||+++
T Consensus       133 ~~~~~~~~~~-~~e~Sak~~~~nV~~~  158 (169)
T d1x1ra1         133 KEMATKYNIP-YIETSAKDPPLNVDKT  158 (169)
T ss_dssp             HHHHHHHTCC-EEEEBCSSSCBSHHHH
T ss_pred             HHHHHHcCCE-EEEEcCCCCCcCHHHH
Confidence            9999999995 6689999886 99987

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-26  Score=165.76  Aligned_cols=105  Identities=23%  Similarity=0.380  Sum_probs=93.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~-~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++|||++|++.|..+++.|++++|++|+|||+++++||+++..| ...+....+++|++|||||+|+.+.          
T Consensus        52 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~  131 (177)
T d1kmqa_          52 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKM  131 (177)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHT
T ss_pred             eeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHh
Confidence            57999999999999999999999999999999999999988765 4555555689999999999999652          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                       .+.++.++++.++++++...|+||||++|.||+++|
T Consensus       132 ~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F  168 (177)
T d1kmqa_         132 KQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF  168 (177)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred             hcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHH
Confidence             367999999999999998889999999999999873

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-26  Score=166.59  Aligned_cols=104  Identities=19%  Similarity=0.323  Sum_probs=93.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++|||+|++.|..++..+++++|++++|||+++++||+++.. |...+....+++|+++||||+|+.++          
T Consensus        59 l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~  138 (185)
T d2atxa1          59 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDM  138 (185)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred             eecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhc
Confidence            4799999999999999999999999999999999999998765 55555556689999999999998642          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.|+.+++.++|++++...|+||||++|.||+++
T Consensus       139 ~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~  174 (185)
T d2atxa1         139 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV  174 (185)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred             ccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHH
Confidence             57899999999999999878999999999999987

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3e-26  Score=164.65  Aligned_cols=102  Identities=32%  Similarity=0.452  Sum_probs=96.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||+|++.+..+++.+++++|++++|||++++.||+.+..|++++.+..+++|++|||||+|+.+ .+.++.++++.
T Consensus        53 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~-~~~v~~~~~~~  131 (164)
T d1z2aa1          53 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD-DSCIKNEEAEG  131 (164)
T ss_dssp             EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG-GCSSCHHHHHH
T ss_pred             eeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCccc-ceeeeehhhHH
Confidence            47999999999999999999999999999999999999999999999988888999999999999988 88999999999


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++.++++ |+++||++|.||+++
T Consensus       132 ~~~~~~~~-~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1         132 LAKRLKLR-FYRTSVKEDLNVSEV  154 (164)
T ss_dssp             HHHHHTCE-EEECBTTTTBSSHHH
T ss_pred             HHHHcCCE-EEEeccCCCcCHHHH
Confidence            99999995 789999999999976

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.4e-26  Score=162.87  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=95.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||+|++.|..++..+++++|++|+|||+++++||+.+..|+..+.+..  +++|++|||||+|+.. .+.|+.+++
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~r~v~~~~~  132 (167)
T d1xtqa1          54 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEG  132 (167)
T ss_dssp             EEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             eeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc-ccchhHHHH
Confidence            4789999999999999999999999999999999999999999999987664  6899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++++++++ |++|||++|.||+++
T Consensus       133 ~~~a~~~~~~-~~e~Sak~~~~v~~~  157 (167)
T d1xtqa1         133 KALAESWNAA-FLESSAKENQTAVDV  157 (167)
T ss_dssp             HHHHHHHTCE-EEECCTTCHHHHHHH
T ss_pred             HHHHHHcCCE-EEEEecCCCCCHHHH
Confidence            9999999985 678999999999987

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=162.48  Aligned_cols=102  Identities=35%  Similarity=0.543  Sum_probs=95.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |++|||||++.|..+++.++++++++++|||++++.||..+..|+..+.+.. ..+|++|||||+|+.. .+.++.++++
T Consensus        56 l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~-~~~v~~~~~~  134 (171)
T d2ew1a1          56 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAE  134 (171)
T ss_dssp             EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc-ccchhhhHHH
Confidence            4789999999999999999999999999999999999999999999887766 6799999999999987 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |++|||++|.||+++
T Consensus       135 ~~~~~~~~~-~~~~SAktg~gV~e~  158 (171)
T d2ew1a1         135 EFSEAQDMY-YLETSAKESDNVEKL  158 (171)
T ss_dssp             HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHhCCCE-EEEEccCCCCCHHHH
Confidence            999999986 678999999999987

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.1e-25  Score=162.45  Aligned_cols=102  Identities=30%  Similarity=0.514  Sum_probs=95.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||||++.|..+++.+++++|++|+|||+++++|+..+..|+..+.... ++.|+++||||+|+.+ .+.++.+++.
T Consensus        56 l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~v~~~~~~  134 (169)
T d3raba_          56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGR  134 (169)
T ss_dssp             EEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc-ccccchhhhH
Confidence            4799999999999999999999999999999999999999999988877665 7899999999999988 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |++|||++|.||+++
T Consensus       135 ~~~~~~~~~-~~e~Sak~g~gv~e~  158 (169)
T d3raba_         135 QLADHLGFE-FFEASAKDNINVKQT  158 (169)
T ss_dssp             HHHHHHTCE-EEECBTTTTBSHHHH
T ss_pred             HHHHHcCCE-EEEecCCCCcCHHHH
Confidence            999999985 778999999999987

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=162.31  Aligned_cols=102  Identities=24%  Similarity=0.440  Sum_probs=88.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++||++|++.+..+++.+++++|++|+|||+++++||+.+..|+..+.... +..|++|||||+|+.. .+.|+.++++
T Consensus        54 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~e~~  132 (167)
T d1z08a1          54 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAE  132 (167)
T ss_dssp             EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             eeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc-ccccchHHHH
Confidence            4799999999999999999999999999999999999999999998877665 7889999999999988 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+|++++++ |++|||++|.||+++
T Consensus       133 ~~a~~~~~~-~~e~Sak~~~~v~e~  156 (167)
T d1z08a1         133 SYAESVGAK-HYHTSAKQNKGIEEL  156 (167)
T ss_dssp             HHHHHTTCE-EEEEBTTTTBSHHHH
T ss_pred             HHHHHcCCe-EEEEecCCCcCHHHH
Confidence            999999996 668999999999987

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.9e-26  Score=166.49  Aligned_cols=102  Identities=30%  Similarity=0.484  Sum_probs=95.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++|||+|++.|..+++.+++++|++|+|||++++.||+.+..|+.++..+.  +.+|++|||||+|+.. .+.|+.+++
T Consensus        66 ~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~v~~~e~  144 (186)
T d2f7sa1          66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQA  144 (186)
T ss_dssp             EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHH
T ss_pred             eccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh-hhcchHHHH
Confidence            4789999999999999999999999999999999999999999998876654  6789999999999988 899999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++.++++ |++|||++|.||+++
T Consensus       145 ~~~~~~~~~~-~~e~Sak~~~~i~e~  169 (186)
T d2f7sa1         145 RELADKYGIP-YFETSAATGQNVEKA  169 (186)
T ss_dssp             HHHHHHTTCC-EEEEBTTTTBTHHHH
T ss_pred             HHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence            9999999985 779999999999987

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7e-25  Score=157.81  Aligned_cols=102  Identities=25%  Similarity=0.464  Sum_probs=95.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.+..++..+++++|++|+|||+++++||+.+..|+..+.... ++.|++|||||+|+.+ .+.++.++++
T Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~  133 (167)
T d1z0ja1          55 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAK  133 (167)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             eeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc-ccchhHHHHH
Confidence            3699999999999999999999999999999999999999999998887776 8899999999999988 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.++++ |++|||++|.||+++
T Consensus       134 ~~~~~~~~~-~~e~SAk~~~nV~e~  157 (167)
T d1z0ja1         134 DYADSIHAI-FVETSAKNAININEL  157 (167)
T ss_dssp             HHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred             HHHHHcCCE-EEEEecCCCCCHHHH
Confidence            999999985 778999999999977

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=159.91  Aligned_cols=103  Identities=24%  Similarity=0.354  Sum_probs=95.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..+++.|++++|++|+|||++++.||+.+..|+..+.+..  +++|++|||||+|+.. .+.++.+++
T Consensus        53 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~  131 (167)
T d1c1ya_          53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQG  131 (167)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             eccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc-ccccchhHH
Confidence            4799999999999999999999999999999999999999999999887654  7899999999999998 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..++++++...|++|||++|.||+++
T Consensus       132 ~~~~~~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_         132 QNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             HHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             HHHHHHhCCCEEEEEcCCCCcCHHHH
Confidence            99999876557889999999999987

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.92  E-value=2.4e-25  Score=160.74  Aligned_cols=102  Identities=27%  Similarity=0.401  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..+++.+++++|++++|||++++.||+.+..|+.++.+..  +++|++|||||+|+.+ .++|+.+++
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~-~~~v~~~~~  132 (168)
T d1u8za_          54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA  132 (168)
T ss_dssp             EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             ccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc-cccccHHHH
Confidence            4789999999999999999999999999999999999999999999998765  7899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.+++.++++ |++|||++|.||+++
T Consensus       133 ~~~~~~~~~~-~~e~Sak~g~gv~e~  157 (168)
T d1u8za_         133 KNRADQWNVN-YVETSAKTRANVDKV  157 (168)
T ss_dssp             HHHHHHHTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHHHcCCe-EEEEcCCCCcCHHHH
Confidence            9999999985 779999999999987

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=158.53  Aligned_cols=102  Identities=31%  Similarity=0.522  Sum_probs=95.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++.|..++..+++++|++++|||+++++||+.+..|+..+.+.. +..|++++|||+|+.. .+.++.+++.
T Consensus        55 l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~  133 (166)
T d1z0fa1          55 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAK  133 (166)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh-hcccHHHHHH
Confidence            4799999999999999999999999999999999999999999999887766 7899999999999988 8889999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++++++ .|++|||++|.||+++
T Consensus       134 ~~~~~~~~-~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1         134 QFAEENGL-LFLEASAKTGENVEDA  157 (166)
T ss_dssp             HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            99999998 5779999999999987

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-25  Score=161.17  Aligned_cols=102  Identities=24%  Similarity=0.413  Sum_probs=95.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.|..++..+++++|++|+|||++++.||+.+..|+..+.+..  +++|++|||||+|+.+ .+.++.+++
T Consensus        56 l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~  134 (173)
T d2fn4a1          56 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEA  134 (173)
T ss_dssp             EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             eeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh-ccccchhhh
Confidence            4789999999999999999999999999999999999999999999887653  7899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |++|||++|.||+++
T Consensus       135 ~~~~~~~~~~-~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1         135 SAFGASHHVA-YFEASAKLRLNVDEA  159 (173)
T ss_dssp             HHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred             hHHHHhcCCE-EEEEeCCCCcCHHHH
Confidence            9999999986 678999999999976

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.5e-25  Score=157.71  Aligned_cols=102  Identities=29%  Similarity=0.421  Sum_probs=95.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus        51 ~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~  129 (164)
T d1yzqa1          51 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGE  129 (164)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             eeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh-hhhhhHHHHH
Confidence            4699999999999999999999999999999999999999999999888766 7899999999999988 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.++++ |++|||++|.||+++
T Consensus       130 ~~~~~~~~~-~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1         130 RKAKELNVM-FIETSAKAGYNVKQL  153 (164)
T ss_dssp             HHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCE-EEEecCCCCcCHHHH
Confidence            999999986 779999999999977

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=161.85  Aligned_cols=102  Identities=24%  Similarity=0.276  Sum_probs=93.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~   77 (170)
                      +++||++|++.|..++..+++++|++++|||+++++||+.+..|+..+.+..   +++|++|||||+|+.. .+.|+.++
T Consensus        52 l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~v~~~e  130 (171)
T d2erxa1          52 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSE  130 (171)
T ss_dssp             EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHH
T ss_pred             eccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc-cccccHHH
Confidence            4689999999999999999999999999999999999999999998876543   6899999999999988 88999999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++++.++++ |++|||++|.||+++
T Consensus       131 ~~~~~~~~~~~-~~e~Sak~~~~v~e~  156 (171)
T d2erxa1         131 AEALARTWKCA-FMETSAKLNHNVKEL  156 (171)
T ss_dssp             HHHHHHHHTCE-EEECBTTTTBSHHHH
T ss_pred             HHHHHHHcCCe-EEEEcCCCCcCHHHH
Confidence            99999999985 678999999999976

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.1e-25  Score=158.43  Aligned_cols=102  Identities=35%  Similarity=0.502  Sum_probs=95.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+.. +++|++|||||+|+.. .+.+..+++.
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~  132 (173)
T d2a5ja1          54 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGE  132 (173)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh-hhhhHHHHHH
Confidence            4689999999999999999999999999999999999999999999988776 7899999999999988 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.||+++
T Consensus       133 ~~a~~~~~~-~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1         133 AFAREHGLI-FMETSAKTACNVEEA  156 (173)
T ss_dssp             HHHHHHTCE-EEEECTTTCTTHHHH
T ss_pred             HHHHHcCCE-EEEecCCCCCCHHHH
Confidence            999999986 678999999999987

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.3e-25  Score=159.83  Aligned_cols=105  Identities=20%  Similarity=0.346  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~-~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++||++|++.+..+++.+++++|++|+|||+++++||+.+..|+ ..+....+++|++|||||+|+..+          
T Consensus        52 ~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~  131 (179)
T d1m7ba_          52 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH  131 (179)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             eccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhh
Confidence            479999999999999999999999999999999999999998654 445555589999999999998531          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAE  105 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~  105 (170)
                       .+.|+.+++..+|++++...|+||||++|.| |+++|
T Consensus       132 ~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F  169 (179)
T d1m7ba_         132 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF  169 (179)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHH
Confidence             5679999999999999998999999999986 88764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.3e-25  Score=160.80  Aligned_cols=104  Identities=17%  Similarity=0.302  Sum_probs=92.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~-~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      ++|||++|+++|..+++.+++++|++++|||+++++||+++..| ...+....+++|+++||||+|+.++          
T Consensus        53 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~  132 (191)
T d2ngra_          53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN  132 (191)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             eeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhc
Confidence            47999999999999999999999999999999999999999865 5555555589999999999998631          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.|+.++++.++++++...|+|+||++|.||+++
T Consensus       133 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~  168 (191)
T d2ngra_         133 KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNV  168 (191)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHH
T ss_pred             ccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Confidence             46799999999999988767889999999999977

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-24  Score=157.65  Aligned_cols=104  Identities=28%  Similarity=0.396  Sum_probs=84.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +++|||+|++.+..++..+++.++++++|||++++.||+.+..|+.++....     +++|++|||||+|+.+..+.++.
T Consensus        54 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~  133 (175)
T d1ky3a_          54 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE  133 (175)
T ss_dssp             EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred             ceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhH
Confidence            4689999999999999999999999999999999999999999999987653     57899999999999873456899


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++++++.++...|++|||++|.||+++
T Consensus       134 ~~~~~~~~~~~~~~~~e~SA~~g~gv~e~  162 (175)
T d1ky3a_         134 KSAQELAKSLGDIPLFLTSAKNAINVDTA  162 (175)
T ss_dssp             HHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Confidence            99999999998767889999999999976

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-25  Score=158.02  Aligned_cols=102  Identities=28%  Similarity=0.381  Sum_probs=95.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..++..+++++|++++|||++++.||..+..|+..+....  +++|++|||||+|+.+ .+.++.+++
T Consensus        53 l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~  131 (167)
T d1kaoa_          53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEG  131 (167)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             eccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh-cccchHHHH
Confidence            4789999999999999999999999999999999999999999999887654  7899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |++|||++|.||+++
T Consensus       132 ~~~~~~~~~~-~~e~Sak~g~~i~e~  156 (167)
T d1kaoa_         132 RALAEEWGCP-FMETSAKSKTMVDEL  156 (167)
T ss_dssp             HHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred             HHHHHHcCCe-EEEECCCCCcCHHHH
Confidence            9999999996 778999999999987

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.9e-25  Score=158.20  Aligned_cols=101  Identities=22%  Similarity=0.341  Sum_probs=89.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+. .+..+++++|++++|||+++++||..+..|+..+....  +++|+++||||+|+.. .+.|+.+++
T Consensus        52 l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~r~V~~~e~  129 (168)
T d2atva1          52 MEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEG  129 (168)
T ss_dssp             EEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred             EEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhh-hccCcHHHH
Confidence            5799999998874 56779999999999999999999999998876654433  7899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcc-hhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQ-EVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~-~v~~~  104 (170)
                      +++|++++++ |++|||++|. ||+++
T Consensus       130 ~~~a~~~~~~-~~e~Saktg~gnV~e~  155 (168)
T d2atva1         130 EKLATELACA-FYECSACTGEGNITEI  155 (168)
T ss_dssp             HHHHHHHTSE-EEECCTTTCTTCHHHH
T ss_pred             HHHHHHhCCe-EEEEccccCCcCHHHH
Confidence            9999999985 7799999998 59987

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=156.56  Aligned_cols=102  Identities=31%  Similarity=0.457  Sum_probs=95.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+||++|++.|..+++.+++++|++++|||+++++||+.+..|+..+.+.. +++|++|||||+|+.+ .+.|+.++++
T Consensus        57 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~e~~~  135 (170)
T d1r2qa_          57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQ  135 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc-cccccHHHHH
Confidence            4689999999999999999999999999999999999999999999887666 7999999999999988 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++++.++++ |++|||++|.||+++
T Consensus       136 ~~~~~~~~~-~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_         136 SYADDNSLL-FMETSAKTSMNVNEI  159 (170)
T ss_dssp             HHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHhcCCE-EEEeeCCCCCCHHHH
Confidence            999999985 779999999999977

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6e-25  Score=158.89  Aligned_cols=100  Identities=23%  Similarity=0.461  Sum_probs=90.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      +++|||+|++.+..+++.+++++|++++|||+++++||+.+..|+..+.+..+++|++|||||+|+.. .+..  +++..
T Consensus        54 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~--~~~~~  130 (170)
T d1i2ma_          54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKVK--AKSIV  130 (170)
T ss_dssp             EEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSC-SCCT--TTSHH
T ss_pred             ccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhh-hhhh--hHHHH
Confidence            47999999999999999999999999999999999999999999999988888999999999999977 4433  45667


Q ss_pred             HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         81 FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        81 ~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..+++ |+++||++|.||+++
T Consensus       131 ~~~~~~~~-~~e~Sak~~~~v~e~  153 (170)
T d1i2ma_         131 FHRKKNLQ-YYDISAKSNYNFEKP  153 (170)
T ss_dssp             HHSSCSSE-EEEEBTTTTBTTTHH
T ss_pred             HHHHcCCE-EEEEeCCCCCCHHHH
Confidence            88888885 678999999999987

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.8e-24  Score=155.69  Aligned_cols=102  Identities=32%  Similarity=0.509  Sum_probs=95.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||||++.|..+|+.+++++|++|+|||++++++|..+..|+..+.+.. .++|++|||||+|+.+ .+.++.+++.
T Consensus        57 l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~  135 (194)
T d2bcgy1          57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAK  135 (194)
T ss_dssp             EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc-ccchhHHHHh
Confidence            4789999999999999999999999999999999999999999988887655 8899999999999998 8999999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++..+++ |+++||++|.||+++
T Consensus       136 ~~~~~~~~~-~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1         136 EFADANKMP-FLETSALDSTNVEDA  159 (194)
T ss_dssp             HHHHHTTCC-EEECCTTTCTTHHHH
T ss_pred             hhhhccCcc-eEEEecCcCccHHHH
Confidence            999999986 678999999999987

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=156.29  Aligned_cols=102  Identities=24%  Similarity=0.377  Sum_probs=91.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+..  ++.|+||||||+|+.. .+.++.+++
T Consensus        55 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~~~~  133 (171)
T d2erya1          55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQEEG  133 (171)
T ss_dssp             EEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT-SCSSCHHHH
T ss_pred             cccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh-hccchHHHH
Confidence            4799999999999999999999999999999999999999999999887664  6899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++++.++++ |++|||++|.||+++
T Consensus       134 ~~~~~~~~~~-~~e~Sak~~~~i~e~  158 (171)
T d2erya1         134 QQLARQLKVT-YMEASAKIRMNVDQA  158 (171)
T ss_dssp             HHHHHHTTCE-EEECBTTTTBSHHHH
T ss_pred             HHHHHHcCCE-EEEEcCCCCcCHHHH
Confidence            9999999996 778999999999977

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.9e-24  Score=153.45  Aligned_cols=102  Identities=28%  Similarity=0.455  Sum_probs=81.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      |+||||||++.|..+++.+++++|++|+|||++++.||+.+..|+..+.... ++.|+++||||+|+.. .+.+..+++.
T Consensus        57 l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~-~~~~~~~~~~  135 (173)
T d2fu5c1          57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGE  135 (173)
T ss_dssp             EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh-hcccHHHHHH
Confidence            4789999999999999999999999999999999999999999999987666 7899999999999988 7888999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .++...+++ |++|||++|.||+++
T Consensus       136 ~~~~~~~~~-~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1         136 KLALDYGIK-FMETSAKANINVENA  159 (173)
T ss_dssp             HHHHHHTCE-EEECCC---CCHHHH
T ss_pred             HHHHhcCCE-EEEEeCCCCCCHHHH
Confidence            999999986 778999999999987

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=156.89  Aligned_cols=99  Identities=23%  Similarity=0.298  Sum_probs=88.4

Q ss_pred             eEEe---cCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235          2 QLWD---TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEA   76 (170)
Q Consensus         2 ~iwD---t~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~   76 (170)
                      .+||   |+|+++|  ++..+++++||+|+|||++++.||+.+..|+..+....  +++|++|||||+|+.+ .++|+.+
T Consensus        56 ~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~  132 (172)
T d2g3ya1          56 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVS  132 (172)
T ss_dssp             EEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHH
T ss_pred             eeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc-cccccHH
Confidence            4566   5567766  67889999999999999999999999999999887654  7899999999999988 8899999


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++++.++++ |+++||++|.||+++
T Consensus       133 ~~~~~a~~~~~~-~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1         133 EGRACAVVFDCK-FIETSAAVQHNVKEL  159 (172)
T ss_dssp             HHHHHHHHHTCE-EEECBTTTTBSHHHH
T ss_pred             HHHHHHHHcCCe-EEEEeCCCCcCHHHH
Confidence            999999999985 778999999999976

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-24  Score=154.12  Aligned_cols=102  Identities=34%  Similarity=0.580  Sum_probs=95.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +++|||+|++++..+++.+++++|++|+|||.++++||..+..|+..+.... +++|+++||||+|+.. .+.++..++.
T Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~  134 (174)
T d2bmea1          56 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEAS  134 (174)
T ss_dssp             EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc-hhchhhhHHH
Confidence            4799999999999999999999999999999999999999999999988776 7899999999999987 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.||+++
T Consensus       135 ~~~~~~~~~-~~e~Sak~~~gi~e~  158 (174)
T d2bmea1         135 RFAQENELM-FLETSALTGENVEEA  158 (174)
T ss_dssp             HHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHhCCCE-EEEeeCCCCcCHHHH
Confidence            999999985 679999999999987

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.7e-24  Score=152.16  Aligned_cols=102  Identities=33%  Similarity=0.477  Sum_probs=87.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++||||||++.|..+++.+++++|++++|||++++.||..+..|+..+.... +..|+++||||+|+.+ .+.++.+++.
T Consensus        58 l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~-~~~v~~~~~~  136 (170)
T d2g6ba1          58 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGE  136 (170)
T ss_dssp             EEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh-cccccHHHHH
Confidence            4799999999999999999999999999999999999999999998877666 6899999999999998 8899999999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |+++||++|.||+++
T Consensus       137 ~~~~~~~~~-~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1         137 KLAKEYGLP-FMETSAKTGLNVDLA  160 (170)
T ss_dssp             HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHcCCE-EEEEeCCCCcCHHHH
Confidence            999999985 789999999999977

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=151.52  Aligned_cols=102  Identities=33%  Similarity=0.513  Sum_probs=94.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      ++|||++|++.|..++..+++++|++|+|||++++.||..+..|+..+.+.. +++|++|||||+|+.+ .+.+..+...
T Consensus        55 ~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~  133 (175)
T d2f9la1          55 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEAR  133 (175)
T ss_dssp             EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred             EEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc-cccchHHHHH
Confidence            4699999999999999999999999999999999999999999999998877 7899999999999988 7788888888


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.+.++. .|++|||++|.||+++
T Consensus       134 ~~~~~~~~-~~~e~Sa~~g~~i~e~  157 (175)
T d2f9la1         134 AFAEKNNL-SFIETSALDSTNVEEA  157 (175)
T ss_dssp             HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             HhhcccCc-eEEEEecCCCcCHHHH
Confidence            88888877 4778999999999987

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=152.74  Aligned_cols=104  Identities=21%  Similarity=0.315  Sum_probs=92.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYAENAKIFLCGNKSDLEGT----------   69 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~~~~pvvlvgnK~Dl~~~----------   69 (170)
                      +++||++|++.|..++..+++++|++++|||+++++||+++.. |...+..+.+++|++|||||+|+...          
T Consensus        55 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~  134 (183)
T d1mh1a_          55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK  134 (183)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhc
Confidence            4799999999999999999999999999999999999999976 66666666689999999999998542          


Q ss_pred             -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       .+.+...++..+|++++...|+||||++|.||+++
T Consensus       135 ~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~  170 (183)
T d1mh1a_         135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  170 (183)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             cccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHH
Confidence             34577889999999999888999999999999987

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=150.65  Aligned_cols=101  Identities=23%  Similarity=0.361  Sum_probs=93.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||++|++.+..+++.++++++++++|||++++.||+.+..|+..+.+..  +++|+++||||+|+..  +.++.+++
T Consensus        53 l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~  130 (166)
T d1ctqa_          53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQA  130 (166)
T ss_dssp             EEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC--CCSCHHHH
T ss_pred             eeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc--ccccHHHH
Confidence            4689999999999999999999999999999999999999999999988765  6799999999999964  78889999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++.++++ |++|||++|.||+++
T Consensus       131 ~~~~~~~~~~-~~e~Sak~g~gi~e~  155 (166)
T d1ctqa_         131 QDLARSYGIP-YIETSAKTRQGVEDA  155 (166)
T ss_dssp             HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred             HHHHHHhCCe-EEEEcCCCCcCHHHH
Confidence            9999999996 779999999999987

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.2e-23  Score=149.23  Aligned_cols=100  Identities=30%  Similarity=0.459  Sum_probs=88.9

Q ss_pred             eEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          2 QLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         2 ~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      .+||++|++.+.. .++.|++++|++|+|||++|++||+.+..|+.++.++.  +++|++|||||+|+.+ .+.|+.+++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~-~~~v~~~~~  132 (165)
T d1z06a1          54 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLA  132 (165)
T ss_dssp             EEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred             EEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh-ccchhHHHH
Confidence            6899999887754 68899999999999999999999999999999998775  6899999999999988 889999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhh
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVE  103 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~  103 (170)
                      ++++++++++ |++|||+++.+.+.
T Consensus       133 ~~~~~~~~~~-~~e~SAkt~~~~~~  156 (165)
T d1z06a1         133 QKFADTHSMP-LFETSAKNPNDNDH  156 (165)
T ss_dssp             HHHHHHTTCC-EEECCSSSGGGGSC
T ss_pred             HHHHHHCCCE-EEEEecccCCcCcC
Confidence            9999999996 66899998664333

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=147.77  Aligned_cols=99  Identities=16%  Similarity=0.258  Sum_probs=85.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCC-CCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGT-TPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~-~~~v~~   75 (170)
                      |+||||+|++.+     .|++++|++|+|||+++++||+.+..|+..+....    +++|+++||||.|+... .+.|+.
T Consensus        54 l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~  128 (175)
T d2bmja1          54 VLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD  128 (175)
T ss_dssp             EEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH
T ss_pred             EEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH
Confidence            579999999764     48899999999999999999999999999887654    67899999998887432 678999


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++..++++.+...|++|||++|.||+++
T Consensus       129 ~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1         129 ARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             HHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             HHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999987765557889999999999976

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.8e-23  Score=147.93  Aligned_cols=103  Identities=27%  Similarity=0.432  Sum_probs=94.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC--CCCCCHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT--TPQVTEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~--~~~v~~~~   77 (170)
                      +++|||+|++.+..+++.+++++|++++|||++++.||+++..|+..+.... ...|++++|||+|+.++  .+.|+.++
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~  133 (170)
T d1ek0a_          54 FEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREE  133 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred             ccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHH
Confidence            5799999999999999999999999999999999999999999998877666 78999999999998542  58999999


Q ss_pred             HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         78 MENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +.++++.+++ .|++|||++|.||+++
T Consensus       134 ~~~~~~~~~~-~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_         134 GEKLAEEKGL-LFFETSAKTGENVNDV  159 (170)
T ss_dssp             HHHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHHcCC-EEEEecCCCCcCHHHH
Confidence            9999999999 5779999999999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=146.35  Aligned_cols=102  Identities=29%  Similarity=0.529  Sum_probs=92.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +++||++|+..+...++.++..+++++++||++++.||+.+..|++++....     +++|++|||||+|+.+  +.++.
T Consensus        57 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~--~~v~~  134 (174)
T d1wmsa_          57 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVST  134 (174)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCH
T ss_pred             EeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh--ccCcH
Confidence            3699999999999999999999999999999999999999999998887653     5799999999999964  78999


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      +++++++++.+...|++|||++|.||+++
T Consensus       135 ~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_         135 EEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             HHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            99999999987656889999999999987

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-22  Score=143.93  Aligned_cols=101  Identities=32%  Similarity=0.467  Sum_probs=93.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.||||||++.+..+++.+++++|++++|||++++.||+.+..|+.++.+..  ...|+++++||.|..  .+.++..++
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~  135 (177)
T d1x3sa1          58 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEG  135 (177)
T ss_dssp             EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHH
Confidence            4699999999999999999999999999999999999999999999987765  578999999999976  478999999


Q ss_pred             HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+++.++++ |++|||++|.||+++
T Consensus       136 ~~~~~~~~~~-~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1         136 LKFARKHSML-FIEASAKTCDGVQCA  160 (177)
T ss_dssp             HHHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred             HHHHHHCCCE-EEEEeCCCCCCHHHH
Confidence            9999999985 679999999999987

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.3e-22  Score=141.24  Aligned_cols=101  Identities=32%  Similarity=0.496  Sum_probs=92.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      +.+|||||++.|..+++.+++++|++++|||.++++||+.+..|+..+.... +..|+++++||.|+..  +.+..+++.
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~--~~~~~~~~~  130 (166)
T d1g16a_          53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET--RVVTADQGE  130 (166)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT--CCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh--hhhhHHHHH
Confidence            4689999999999999999999999999999999999999999988877776 7789999999999864  678899999


Q ss_pred             HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+++.++++ |++|||++|.||+++
T Consensus       131 ~~~~~~~~~-~~~~Sa~~~~~v~e~  154 (166)
T d1g16a_         131 ALAKELGIP-FIESSAKNDDNVNEI  154 (166)
T ss_dssp             HHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             HHHHhcCCe-EEEECCCCCCCHHHH
Confidence            999999985 678999999999977

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.9e-21  Score=141.61  Aligned_cols=102  Identities=30%  Similarity=0.475  Sum_probs=90.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~   75 (170)
                      +++|||+|+..+..+++.++..+|++++|||++++.+|..+..|++++....     .++|++|||||+|+.+  +.+..
T Consensus        53 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~--~~~~~  130 (184)
T d1vg8a_          53 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVAT  130 (184)
T ss_dssp             EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCH
T ss_pred             EEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc--cchhH
Confidence            3689999999999999999999999999999999999999999999887653     4789999999999975  67888


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ++...++...+...|++|||++|.||+++
T Consensus       131 ~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_         131 KRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             HHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            88888887776556889999999999987

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=135.98  Aligned_cols=100  Identities=19%  Similarity=0.365  Sum_probs=78.4

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||++|++.|..+++.+++++|++++|||++++.++..+..|+..+....  .+.|++|||||+|+.+   .++..+.
T Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~---~~~~~~i  139 (182)
T d1moza_          63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG---ALSASEV  139 (182)
T ss_dssp             EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc---ccCHHHH
Confidence            4789999999999999999999999999999999999999999987765544  6899999999999965   4455444


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.     +...++ .|++|||++|+||+++
T Consensus       140 ~~~~~~~~~~~~~~-~~~e~SA~~g~gv~e~  169 (182)
T d1moza_         140 SKELNLVELKDRSW-SIVASSAIKGEGITEG  169 (182)
T ss_dssp             HHHTTTTTCCSSCE-EEEEEBGGGTBTHHHH
T ss_pred             HHHHHHHHHhhCCC-EEEEEECCCCCCHHHH
Confidence            332     222232 5789999999999977

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.82  E-value=8.1e-20  Score=131.60  Aligned_cols=100  Identities=20%  Similarity=0.373  Sum_probs=81.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||+||++.+...+..++++++++++|||++++.++..+..|+....+..  .+.|++|||||+|+.+   .....+.
T Consensus        58 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~---~~~~~~i  134 (173)
T d1e0sa_          58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---AMKPHEI  134 (173)
T ss_dssp             EEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred             eEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccc---cccHHHH
Confidence            4689999999999999999999999999999999999999999888776543  7899999999999976   3333333


Q ss_pred             HH-----HHHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 EN-----FWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~-----~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..     .+...++ .|++|||++|+||.++
T Consensus       135 ~~~~~~~~~~~~~~-~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_         135 QEKLGLTRIRDRNW-YVQPSCATSGDGLYEG  164 (173)
T ss_dssp             HHHTTGGGCCSSCE-EEEECBTTTTBTHHHH
T ss_pred             HHHHHHHHHHhCCC-EEEEeeCCCCcCHHHH
Confidence            22     2222233 5789999999999987

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.81  E-value=8.6e-20  Score=130.23  Aligned_cols=101  Identities=17%  Similarity=0.341  Sum_probs=80.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+|||+|++.+..++..++++++++++|||++|..+|..+..|+.......  .++|++|||||+|+.+ ..  +.++.
T Consensus        48 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~--~~~~~  124 (165)
T d1ksha_          48 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG-AL--SCNAI  124 (165)
T ss_dssp             EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-CC--CHHHH
T ss_pred             eeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc-cc--CHHHH
Confidence            4699999999999999999999999999999999999999887776665433  7899999999999976 33  33343


Q ss_pred             HHHH--HhcC--CCeEEEcccCCcchhhhH
Q psy17235         79 ENFW--SRRS--SRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a--~~~~--~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....  ...+  ...|++|||++|+||.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_         125 QEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             HHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            3332  1222  125789999999999987

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.81  E-value=6.2e-20  Score=132.15  Aligned_cols=100  Identities=18%  Similarity=0.344  Sum_probs=81.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||++|++.+..++..+++++|++++|||++++.||..+..|+..+....  .++|++|||||+|+.+   .....+.
T Consensus        62 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~---~~~~~~~  138 (176)
T d1fzqa_          62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT---AAPASEI  138 (176)
T ss_dssp             EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred             EeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccc---cccHHHH
Confidence            4789999999999999999999999999999999999999998888776554  6899999999999976   3333333


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.     ++.. ...|++|||++|+||+++
T Consensus       139 ~~~~~~~~~~~~-~~~~~~~SA~tg~gv~e~  168 (176)
T d1fzqa_         139 AEGLNLHTIRDR-VWQIQSCSALTGEGVQDG  168 (176)
T ss_dssp             HHHTTGGGCCSS-CEEEEECCTTTCTTHHHH
T ss_pred             HHHHHHHHHHhc-CCEEEEEeCCCCCCHHHH
Confidence            222     2222 235889999999999987

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.80  E-value=2e-19  Score=128.47  Aligned_cols=100  Identities=19%  Similarity=0.328  Sum_probs=82.1

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +++||+||++.|...|..++.+++++++|||++++.+|..+..|+..+.+..  +++|++|||||+|+.+   ..+..+.
T Consensus        49 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~---~~~~~~i  125 (164)
T d1zd9a1          49 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---ALDEKEL  125 (164)
T ss_dssp             EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccch---hhhHHHH
Confidence            4799999999999999999999999999999999999999999988876654  7899999999999975   2333332


Q ss_pred             HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235         79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.     ++..++ .|+++||++|.||+++
T Consensus       126 ~~~~~~~~~~~~~~-~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1         126 IEKMNLSAIQDREI-CCYSISCKEKDNIDIT  155 (164)
T ss_dssp             HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHHHHHhCCC-EEEEEeCcCCcCHHHH
Confidence            222     223333 4789999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.71  E-value=6.5e-18  Score=118.77  Aligned_cols=103  Identities=16%  Similarity=0.336  Sum_probs=83.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCC--CCCCCHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGT--TPQVTEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~--~~~v~~~   76 (170)
                      +.+||++|++.+...+..+++++++++++||++++.++..+..|+.++....  ..+|++++|||+|+.+.  .+++...
T Consensus        46 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~  125 (160)
T d1r8sa_          46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK  125 (160)
T ss_dssp             EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             EEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHH
Confidence            4689999999999999999999999999999999999999999988877555  68999999999998761  1122222


Q ss_pred             HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         77 DMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .+..+++..++ .|++|||++|+||+++
T Consensus       126 ~~~~~~~~~~~-~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_         126 LGLHSLRHRNW-YIQATCATSGDGLYEG  152 (160)
T ss_dssp             TTGGGCSSCCE-EEEECBTTTTBTHHHH
T ss_pred             HHHHHHhhCCC-EEEEeECCCCCCHHHH
Confidence            23334444454 5889999999999987

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.8e-18  Score=123.24  Aligned_cols=105  Identities=14%  Similarity=0.049  Sum_probs=74.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHH-----------HHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-----------VLSQHLLEIVTYA-ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~-----------~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~   68 (170)
                      +++|||+||+.|..+|..|+++++++++|||+++..+|.           ....|...+.... .++|++++|||+|+..
T Consensus        44 ~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~  123 (195)
T d1svsa1          44 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE  123 (195)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             eeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhh
Confidence            579999999999999999999999999999999998773           3344544444333 7899999999999622


Q ss_pred             C--------------CCCCCHHHHH-----HHHHhc-----CCCeEEEcccCCcchhhhHH
Q psy17235         69 T--------------TPQVTEADME-----NFWSRR-----SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~--------------~~~v~~~~~~-----~~a~~~-----~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .              .......++.     .+....     +..+|++|||+++.||+++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F  184 (195)
T d1svsa1         124 EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  184 (195)
T ss_dssp             HHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             hhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHH
Confidence            0              0111222221     111111     12357789999999999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.59  E-value=1.4e-14  Score=103.34  Aligned_cols=101  Identities=20%  Similarity=0.369  Sum_probs=75.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.+||++|++.+...+..++..++++++|+|.++..++.....+........  .+.|++|||||+|+..   .....+.
T Consensus        61 ~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~i  137 (177)
T d1zj6a1          61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEI  137 (177)
T ss_dssp             EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred             EEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccc---cCcHHHH
Confidence            3689999999999999999999999999999999999998877766555443  7899999999999976   2333333


Q ss_pred             HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235         79 ENFWSRR----SSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .......    ....|+++||++|+||+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1         138 SQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             HHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             HHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            3322111    1235889999999999987

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=110.42  Aligned_cols=105  Identities=13%  Similarity=0.068  Sum_probs=77.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh-----------hHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-----------SFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-----------Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~   68 (170)
                      +++||++||+.+..+|..++++++++++|||.++..           +++.+..|...+.... +++|++++|||+|+..
T Consensus        47 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          47 FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             EEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHH
T ss_pred             eeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhh
Confidence            479999999999999999999999999999998864           4666777877776665 8999999999999743


Q ss_pred             C---------------CCCCCHHHHHHHHHh----c-----CCCeEEEcccCCcchhhhHH
Q psy17235         69 T---------------TPQVTEADMENFWSR----R-----SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~---------------~~~v~~~~~~~~a~~----~-----~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .               ..+-+...+..+...    .     .-.++++|||++|+||.++|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF  187 (200)
T d2bcjq2         127 EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF  187 (200)
T ss_dssp             HHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHH
T ss_pred             hcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHH
Confidence            1               111222232322211    1     11346789999999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.6e-13  Score=94.56  Aligned_cols=101  Identities=18%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      .+||++|+..+..+++.++..+++++++||.+++.++.....|+.......  .+.|+++++||.|+..   .++..+..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~---~~~~~~i~  123 (166)
T d2qtvb1          47 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELR  123 (166)
T ss_dssp             EEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS---CCCHHHHH
T ss_pred             EEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc---cCCHHHHH
Confidence            589999999999999999999999999999999999999988887766555  6899999999999965   45555443


Q ss_pred             HHHHh-----------cCCCeEEEcccCCcchhhhHH
Q psy17235         80 NFWSR-----------RSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        80 ~~a~~-----------~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .....           .....|++|||++|+||++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~  160 (166)
T d2qtvb1         124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF  160 (166)
T ss_dssp             HHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred             HHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence            33211           111258899999999999873

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=4.5e-14  Score=101.39  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~   72 (170)
                      +.+|||||.......        ...+++++|++++|+|.+++.+... ..|...+.....+.|+++|+||+|+.. .  
T Consensus        55 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~-~--  130 (178)
T d1wf3a1          55 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAK-Y--  130 (178)
T ss_dssp             EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCS-S--
T ss_pred             eeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccccchhhhhhhccccccc-C--
Confidence            468999998553332        3345789999999999998766543 345555555557899999999999865 2  


Q ss_pred             CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                       ..+....+....+...++.+||++|.|+++.
T Consensus       131 -~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1         131 -PEEAMKAYHELLPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             -HHHHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             -HHHHHHHHHhhcccCceEEEecCCCCCHHHH
Confidence             2334455666667667788999999999865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.6e-14  Score=103.82  Aligned_cols=105  Identities=14%  Similarity=0.120  Sum_probs=68.6

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS----------FHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~S----------f~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      +++||++||+.+...|..+++++++++++||.++..+          ++....|+..+....  .++|++|+|||+|+..
T Consensus        46 ~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          46 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             eeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            4799999999999999999999999999999998643          455556666665443  7999999999999742


Q ss_pred             C---------------CCCCCHHHHHHHHHhc----------CCCeEEEcccCCcchhhhHH
Q psy17235         69 T---------------TPQVTEADMENFWSRR----------SSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        69 ~---------------~~~v~~~~~~~~a~~~----------~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      .               ...-..+.+.++....          ...++++|||++++||+++|
T Consensus       126 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf  187 (200)
T d1zcba2         126 EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  187 (200)
T ss_dssp             HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             hhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHH
Confidence            1               0112223333332221          11356679999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.44  E-value=2.8e-13  Score=95.08  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=79.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCC---CCH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQ---VTE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~---v~~   75 (170)
                      +.+||++|.+.+...+..++...+++++++|+++..++.....++.......  ...|+++++||.|+.+ ...   +..
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~-~~~~~~i~~  129 (169)
T d1upta_          51 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ-AMTSSEMAN  129 (169)
T ss_dssp             EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-CCCHHHHHH
T ss_pred             EEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccc-cccHHHHHH
Confidence            3589999999999999999999999999999999999988877665555443  7899999999999976 222   222


Q ss_pred             HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ..+..++...++ .|+++||++|.||+++
T Consensus       130 ~~~~~~~~~~~~-~~~~~SA~~g~gv~e~  157 (169)
T d1upta_         130 SLGLPALKDRKW-QIFKTSATKGTGLDEA  157 (169)
T ss_dssp             HHTGGGCTTSCE-EEEECCTTTCTTHHHH
T ss_pred             HHHHHHHhcCCC-EEEEEeCCCCCCHHHH
Confidence            222334444444 5789999999999976

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.40  E-value=1.3e-12  Score=92.85  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=77.1

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADME   79 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~   79 (170)
                      .+||+.|+..+...+..+++..+++++++|++++.++.....++.......  .+.|+++++||.|++.   .++..+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~---~~~~~~i~  136 (186)
T d1f6ba_          60 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLR  136 (186)
T ss_dssp             EEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHH
T ss_pred             ccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc---cCCHHHHH
Confidence            579999999999999999999999999999999999998876665554433  7899999999999865   55666555


Q ss_pred             HHHHhcC----------------CCeEEEcccCCcchhhhHH
Q psy17235         80 NFWSRRS----------------SRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        80 ~~a~~~~----------------~~~~~e~Sa~~~~~v~~~~  105 (170)
                      +......                ...|++|||++|+||+|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~  178 (186)
T d1f6ba_         137 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF  178 (186)
T ss_dssp             HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred             HHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHH
Confidence            4443221                1258899999999999884

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=3.7e-13  Score=100.13  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA----------SFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~----------Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~   68 (170)
                      +++||++||+.++..|..++++++++++|+|+++..          ++.....++..+....  .++|++|+|||+|+.+
T Consensus        49 ~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          49 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             EEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             EEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            479999999999999999999999999999998643          2333333444444433  7899999999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=9.5e-12  Score=88.99  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=64.9

Q ss_pred             CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +++|||||...       +....-..+..++++++++|....  .++.....|+........+.|+++|+||+|+.. ..
T Consensus        51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-~~  129 (180)
T d1udxa2          51 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE-EE  129 (180)
T ss_dssp             EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-HH
T ss_pred             EEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh-HH
Confidence            46899999432       111223456789999999998653  344444445443322224689999999999976 22


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      .  .++..+.....+.+ ++.+||++|.||++.
T Consensus       130 ~--~~~~~~~~~~~~~~-~~~iSA~tg~gid~L  159 (180)
T d1udxa2         130 A--VKALADALAREGLA-VLPVSALTGAGLPAL  159 (180)
T ss_dssp             H--HHHHHHHHHTTTSC-EEECCTTTCTTHHHH
T ss_pred             H--HHHHHHHHHhcCCe-EEEEEcCCCCCHHHH
Confidence            2  23344444555665 667999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.5e-12  Score=90.21  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             eEEecCCccccc--------cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          2 QLWDTGGMERVA--------SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         2 ~iwDt~G~e~~~--------~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      .+||++|.....        .....+++.+|++++++|.+++.++.....|...+.....+.|+++|+||+|+..+....
T Consensus        52 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~  131 (161)
T d2gj8a1          52 HIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM  131 (161)
T ss_dssp             EEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE
T ss_pred             eeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH
Confidence            589999964432        224456889999999999999999888877776666665789999999999986522111


Q ss_pred             CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                               .+.+...++++||++|.||++.
T Consensus       132 ---------~~~~~~~~~~iSAk~~~gi~~L  153 (161)
T d2gj8a1         132 ---------SEVNGHALIRLSARTGEGVDVL  153 (161)
T ss_dssp             ---------EEETTEEEEECCTTTCTTHHHH
T ss_pred             ---------HHhCCCcEEEEECCCCCCHHHH
Confidence                     1233446788999999999964

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.1e-11  Score=89.01  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CeEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhh----CCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTY----AENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~   68 (170)
                      +.+||++|++.+. .++..+++.++++++|||+++..++ .....|+..+...    ..++|++||+||+|+.+
T Consensus        49 ~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          49 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             eeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            4689999999885 5788899999999999999998764 5555555544322    25789999999999976

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.16  E-value=6.3e-11  Score=88.17  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.++||||++.|...+...+..+|++|+|+|..+.-.-+.. ..+..+..  .++|+|+|.||+|+.+
T Consensus        72 ~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM--YRTPFVVAANKIDRIH  136 (227)
T ss_dssp             EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGST
T ss_pred             cccccccceecccccchhcccccceEEEEEecccCcccchh-HHHHHhhc--CCCeEEEEEECccCCC
Confidence            36899999999988888889999999999999875443332 22233333  3789999999999876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=1.6e-10  Score=81.67  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             CeEEecCCccc---------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMER---------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~---------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.+||++|...         +......++..+|+++++.|.+...+... ..|+..+...  +.|+|+|+||+|+.+   
T Consensus        50 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~---  123 (171)
T d1mkya1          50 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLR---  123 (171)
T ss_dssp             EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHH---
T ss_pred             cccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhh---
Confidence            35799998421         22233445678999999999887665543 3455555544  689999999999854   


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....+...++.+ .+...++++||++|.|+++.
T Consensus       124 ~~~~~~~~~~~~-~~~~~~i~iSAk~g~gid~L  155 (171)
T d1mkya1         124 EFEREVKPELYS-LGFGEPIPVSAEHNINLDTM  155 (171)
T ss_dssp             HHHHHTHHHHGG-GSSCSCEECBTTTTBSHHHH
T ss_pred             hhhhHHHHHHHh-cCCCCeEEEecCCCCCHHHH
Confidence            222233333333 45555678999999999965

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.06  E-value=2.3e-10  Score=81.87  Aligned_cols=99  Identities=19%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC--HHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT--EADME   79 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~--~~~~~   79 (170)
                      .++|++|+..|.......+..+|++++|+|.++....+....| ..+..  .++|+++|.||+|+.+ ...+.  .+...
T Consensus        62 ~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~--~~~p~iiv~NKiD~~~-~~~~~~~~~~~~  137 (179)
T d1wb1a4          62 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH--FNIPIIVVITKSDNAG-TEEIKRTEMIMK  137 (179)
T ss_dssp             EECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCBCEEEECTTSSC-HHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh--cCCcceeccccccccC-HHHHHHHHHHHH
Confidence            5799999999988888899999999999999986544332222 22222  4789999999999876 22111  11122


Q ss_pred             HHHHh-cCC--CeEEEcccCCcchhhhH
Q psy17235         80 NFWSR-RSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~-~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      .+.+. .+.  ..++.+||++|.|+++.
T Consensus       138 ~~~~~~~~~~~~~iv~iSA~~g~gi~eL  165 (179)
T d1wb1a4         138 SILQSTHNLKNSSIIPISAKTGFGVDEL  165 (179)
T ss_dssp             HHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred             HHHHHhhcCCCCeEEEEEccCCcCHHHH
Confidence            22222 222  35678999999999975

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=1.1e-10  Score=83.14  Aligned_cols=98  Identities=13%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             CeEEecCCcc---------------ccccchhhhccCCcEEEEEEeCCChhhHHHHH----------HHHHHHHhhCCCC
Q psy17235          1 MQLWDTGGME---------------RVASITSSYYKFAEAAILVFSLDNAASFHVLS----------QHLLEIVTYAENA   55 (170)
Q Consensus         1 l~iwDt~G~e---------------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~----------~~~~~i~~~~~~~   55 (170)
                      ++||||||..               .+.......++.+|++++|+|.+++.......          ..+..+..  .+.
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~  122 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDI  122 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTC
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCC
Confidence            3689999941               11222344567899999999998654432221          11222222  479


Q ss_pred             eEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC------CeEEEcccCCcchhhhH
Q psy17235         56 KIFLCGNKSDLEGTTPQVTEADMENFWSRRSS------RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        56 pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~------~~~~e~Sa~~~~~v~~~  104 (170)
                      |+++|+||+|+.. ...   .....+....+.      ..++++||++|.|+++.
T Consensus       123 p~iiv~NK~D~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L  173 (184)
T d2cxxa1         123 PTIVAVNKLDKIK-NVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL  173 (184)
T ss_dssp             CEEEEEECGGGCS-CHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred             CEEEEEeeeehhh-hHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHH
Confidence            9999999999764 211   222223333322      23778999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=1.8e-09  Score=75.10  Aligned_cols=94  Identities=14%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             CeEEecCCccc--------cc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235          1 MQLWDTGGMER--------VA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP   71 (170)
Q Consensus         1 l~iwDt~G~e~--------~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~   71 (170)
                      +.+|||||...        +. ......+.++|++++|+|.+++.+.+...-+     ......|+++++||.|+.+   
T Consensus        50 ~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-----~~~~~~~~i~~~~k~d~~~---  121 (160)
T d1xzpa2          50 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-----ERIKNKRYLVVINKVDVVE---  121 (160)
T ss_dssp             EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-----HHHTTSSEEEEEEECSSCC---
T ss_pred             EEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhh-----hhcccccceeeeeeccccc---
Confidence            36899999422        10 1122236789999999999998876544322     2225688999999999976   


Q ss_pred             CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235         72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~  104 (170)
                      ....++...... .+ ..++.+||++|.|+++.
T Consensus       122 ~~~~~~~~~~~~-~~-~~~~~vSA~~g~gi~~L  152 (160)
T d1xzpa2         122 KINEEEIKNKLG-TD-RHMVKISALKGEGLEKL  152 (160)
T ss_dssp             CCCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHH
T ss_pred             hhhhHHHHHHhC-CC-CcEEEEECCCCCCHHHH
Confidence            333443332221 22 34677999999999965

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=5.6e-09  Score=74.29  Aligned_cols=100  Identities=10%  Similarity=0.018  Sum_probs=63.0

Q ss_pred             eEEecCCcccc------------ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235          2 QLWDTGGMERV------------ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT   69 (170)
Q Consensus         2 ~iwDt~G~e~~------------~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~   69 (170)
                      .++|++|....            ......+++.+|++++|+|.+....-+ ...++..+..  .+.|+|+|+||+|+.. 
T Consensus        59 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~--~~~~~i~v~nK~D~~~-  134 (186)
T d1mkya2          59 VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER--RGRASVVVFNKWDLVV-  134 (186)
T ss_dssp             EESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGST-
T ss_pred             eeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH--cCCceeeeccchhhhc-
Confidence            46788886432            223344567899999999998764432 2334444433  3789999999999866 


Q ss_pred             CCCCCHHHHHHHHHh----cCCCeEEEcccCCcchhhhHH
Q psy17235         70 TPQVTEADMENFWSR----RSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        70 ~~~v~~~~~~~~a~~----~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ......++..+..++    .+...++.+||++|.||++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~  174 (186)
T d1mkya2         135 HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI  174 (186)
T ss_dssp             TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHH
T ss_pred             chhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Confidence            344333443333222    334457789999999998753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.85  E-value=1.9e-09  Score=77.98  Aligned_cols=101  Identities=15%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADME   79 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~~   79 (170)
                      .+.||||++.|......-+..+|++++|.|..+...-......+..+... .-.|++++.||+|+.+ ....  ..++..
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d-~~~~~~~~~~~~  158 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVD-KEKALENYRQIK  158 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSC-HHHHHHHHHHHH
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchh-hHHHHHHHHHHH
Confidence            58999999999888777788999999999998753223333333333332 2345788899999876 2211  123344


Q ss_pred             HHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      ++....+.  ..|+++||++|.|+++.
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~L  185 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVL  185 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHH
Confidence            45544433  35788999999999864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=2.8e-09  Score=77.75  Aligned_cols=103  Identities=14%  Similarity=0.165  Sum_probs=66.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEADME   79 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~~~~   79 (170)
                      +.+.||||++.|....-.-+..+|++|+|.|..+.-.-...+..+..+... .-.|+||+.||+|+.++.... ...+..
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~~~~~~~  166 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIK  166 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCccchHHHHHHHHHH
Confidence            368999999999887777788999999999998752112222222222222 234888999999997621111 112233


Q ss_pred             HHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235         80 NFWSRRSS--RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        80 ~~a~~~~~--~~~~e~Sa~~~~~v~~~  104 (170)
                      .+....+.  ..++..||++|.||++.
T Consensus       167 ~~l~~~~~~~~p~ipiSA~~g~nI~~L  193 (205)
T d2qn6a3         167 QFTKGTWAENVPIIPVSALHKINIDSL  193 (205)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             HHhccccCCCCeEEEEeCCCCCChHHH
Confidence            34443332  34788999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=4.9e-09  Score=75.69  Aligned_cols=68  Identities=22%  Similarity=0.361  Sum_probs=52.3

Q ss_pred             CeEEecCCccccccchhhhcc----CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----C-CCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYK----FAEAAILVFSLD-NAASFHVLSQHLLEIVTY----A-ENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~----~ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~----~-~~~pvvlvgnK~Dl~~   68 (170)
                      +.+|||||++.+...+..++.    .++++++++|.+ +..+++.+..|+..+...    . .++|+++|+||+|+.+
T Consensus        48 ~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          48 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            579999999988777666654    458888888866 567888888777654322    2 6899999999999976

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=1.5e-09  Score=77.42  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             CeEEecCCccc----cccchhh---hccCCcEEEEEEeCCChhhHHHHHHH--HHHH-HhhC---CCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMER----VASITSS---YYKFAEAAILVFSLDNAASFHVLSQH--LLEI-VTYA---ENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~----~~~~~~~---~~~~ad~iilv~D~t~~~Sf~~~~~~--~~~i-~~~~---~~~pvvlvgnK~Dl~   67 (170)
                      +++|||||...    ...+...   .+..++.++.+.+............+  .... ....   .+.|+++|+||+|+.
T Consensus        51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          51 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             EEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchH
Confidence            46899999632    1222222   24568888888877655433322222  1111 1111   478999999999987


Q ss_pred             CCCCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235         68 GTTPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        68 ~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~  104 (170)
                      + .    .+....+.+.++- ..++.+||++|.|+++.
T Consensus       131 ~-~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L  163 (185)
T d1lnza2         131 E-A----AENLEAFKEKLTDDYPVFPISAVTREGLREL  163 (185)
T ss_dssp             T-H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred             h-H----HHHHHHHHHHhccCCcEEEEECCCCCCHHHH
Confidence            6 2    2334445544422 23567899999999975

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.79  E-value=8.1e-09  Score=76.44  Aligned_cols=99  Identities=21%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC-C---CH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ-V---TE   75 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~-v---~~   75 (170)
                      +.|.||||++.|......-...+|++++|+|..+.-.=+....| ..+..  .++| +|++.||+|+.+ ..+ .   ..
T Consensus        91 ~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~--~gv~~iiv~vNK~D~~~-~~~~~~~~~~  166 (222)
T d1zunb3          91 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASL--LGIKHIVVAINKMDLNG-FDERVFESIK  166 (222)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCEEEEEEECTTTTT-SCHHHHHHHH
T ss_pred             EEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHH--cCCCEEEEEEEcccccc-ccceehhhhH
Confidence            35899999999988777778999999999999874322222112 11122  2555 788999999976 222 1   11


Q ss_pred             HHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235         76 ADMENFWSRRSS----RRFKPQEVVEPQEVVE  103 (170)
Q Consensus        76 ~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~  103 (170)
                      ++...+.+..++    ..|+++||.+|.||.+
T Consensus       167 ~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         167 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            244556666655    2578999999999865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=1.5e-07  Score=67.26  Aligned_cols=82  Identities=12%  Similarity=0.004  Sum_probs=52.8

Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc---CCCeEEEcc
Q psy17235         18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR---SSRRFKPQE   94 (170)
Q Consensus        18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~---~~~~~~e~S   94 (170)
                      ..+..+|++++++|.+++..-. ...++..+...  +.|+++|+||+|+.. ...+. +....+.+.+   ....++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~~--~~piivv~NK~D~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSND-DVQMYEFLKYY--GIPVIVIATKADKIP-KGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT--TCCEEEEEECGGGSC-GGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhcccccccc-ccccccccccc--cCcceechhhccccC-HHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            4456789999999998654321 12344444443  689999999999865 22222 2223233332   334577899


Q ss_pred             cCCcchhhhH
Q psy17235         95 VVEPQEVVEA  104 (170)
Q Consensus        95 a~~~~~v~~~  104 (170)
                      |++|.|+++.
T Consensus       176 A~~~~gi~el  185 (195)
T d1svia_         176 SETKKGKDEA  185 (195)
T ss_dssp             TTTCTTHHHH
T ss_pred             CCCCCCHHHH
Confidence            9999999986

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.49  E-value=1.8e-07  Score=69.92  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCC-C
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTP-Q   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~-~   72 (170)
                      +.+.||||+..|....-.-...+|++++|+|..+.   .++.   .....+..+..  .++| ++++.||+|+..... +
T Consensus       104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~--~~i~~iiv~iNKmD~~~~~~~e  181 (245)
T d1r5ba3         104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWSE  181 (245)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSCH
T ss_pred             eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH--cCCCeEEEEEEcCCCCccchhH
Confidence            35789999999988888888999999999999863   1111   11222222222  2454 778889999864111 1


Q ss_pred             CCH----HHHHHHHHhc-CC-----CeEEEcccCCcchhhh
Q psy17235         73 VTE----ADMENFWSRR-SS-----RRFKPQEVVEPQEVVE  103 (170)
Q Consensus        73 v~~----~~~~~~a~~~-~~-----~~~~e~Sa~~~~~v~~  103 (170)
                      -..    ++...+.... +.     ..|+++||++|.||.+
T Consensus       182 ~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~  222 (245)
T d1r5ba3         182 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  222 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCccc
Confidence            001    1222232332 22     2588999999999986

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=9.2e-08  Score=71.38  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---F---HVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~S---f---~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v   73 (170)
                      +.|.|||||..|......-...+|++|+|.|.+....   |   -.....+.....  -++| +|++.||+|+.+ ...-
T Consensus        86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--~gv~~iiv~iNKmD~~~-~d~~  162 (239)
T d1f60a3          86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVK-WDES  162 (239)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGT-TCHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--cCCCeEEEEEECCCCCC-CCHH
Confidence            4689999999998888888999999999999875310   0   011111122222  2565 788999999865 2111


Q ss_pred             ----CHHHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235         74 ----TEADMENFWSRRSS----RRFKPQEVVEPQEVVE  103 (170)
Q Consensus        74 ----~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~  103 (170)
                          ..++...+....+.    ..|...||.+|.|+.+
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                11344555555554    3578999999999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.47  E-value=1.7e-07  Score=67.88  Aligned_cols=96  Identities=13%  Similarity=0.068  Sum_probs=63.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC---CHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV---TEAD   77 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v---~~~~   77 (170)
                      +.+.||||+..|......-+..+|++++|+|.++.-.= ..++.+..+... .-.|+|++.||+|+.. ....   -..+
T Consensus        68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~-~~~~iIv~iNK~D~~~-~~~~~~~i~~~  144 (196)
T d1d2ea3          68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI-GVEHVVVYVNKADAVQ-DSEMVELVELE  144 (196)
T ss_dssp             EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT-TCCCEEEEEECGGGCS-CHHHHHHHHHH
T ss_pred             EEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh-cCCcEEEEEecccccc-cHHHHHHHHHH
Confidence            36899999999988777778999999999999875332 223333333332 3457888999999865 2111   1124


Q ss_pred             HHHHHHhcCC----CeEEEcccCCcc
Q psy17235         78 MENFWSRRSS----RRFKPQEVVEPQ   99 (170)
Q Consensus        78 ~~~~a~~~~~----~~~~e~Sa~~~~   99 (170)
                      ...+....+.    ..++..||++|.
T Consensus       145 i~~~l~~~~~~~~~~pii~iSa~~g~  170 (196)
T d1d2ea3         145 IRELLTEFGYKGEETPIIVGSALCAL  170 (196)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred             HHHHHHHhCCCcccCEEEEEEccccc
Confidence            4455555554    347788998873

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=9.8e-08  Score=69.48  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC-C--CHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ-V--TEA   76 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~-v--~~~   76 (170)
                      +.|.||||+..|....-.-++.+|++|+|+|.++.-..+....|. .+..  .++| +|++.||+|+.+ ... .  -.+
T Consensus        69 i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~--~gi~~iiv~iNK~D~~~-~~~~~~~~~~  144 (204)
T d2c78a3          69 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ--VGVPYIVVFMNKVDMVD-DPELLDLVEM  144 (204)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGCC-CHHHHHHHHH
T ss_pred             EEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH--cCCCeEEEEEEecccCC-CHHHHHHHHH
Confidence            368999999999887778889999999999998876665544442 2222  2666 677799999865 211 1  113


Q ss_pred             HHHHHHHhcCC----CeEEEcccCCc
Q psy17235         77 DMENFWSRRSS----RRFKPQEVVEP   98 (170)
Q Consensus        77 ~~~~~a~~~~~----~~~~e~Sa~~~   98 (170)
                      +...+...++.    ..++..|+..+
T Consensus       145 ~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         145 EVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHHHHHhcCCCcccceeeeeechhh
Confidence            34444444443    34677776544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.46  E-value=1.3e-07  Score=69.59  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=66.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC-CC-
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT-PQ-   72 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf---~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~-~~-   72 (170)
                      +.|.||||++.|......-.+-+|++|+|+|..+-.   ++   ..+...+.. .....-.++|++.||+|+.... .. 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~-~~~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL-AKTMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH-HHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHH-HHHhCCCceEEEEEcccCCCccccHH
Confidence            468999999999998888899999999999998742   11   111111111 1112344688889999986411 11 


Q ss_pred             ---CCHHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235         73 ---VTEADMENFWSRRSS----RRFKPQEVVEPQEVVEA  104 (170)
Q Consensus        73 ---v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~  104 (170)
                         .-..+...+...++.    ..|+++||..|.||.+.
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~  200 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  200 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccc
Confidence               011234444454443    35789999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=3.7e-07  Score=71.34  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=56.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADM   78 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~   78 (170)
                      +.|.||||+..|..-....++-+||+++|+|..+.-..+...-|.... .  .++|++++.||+|.....-..+++++
T Consensus        98 inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~--~~~p~i~viNKiDr~~~el~~~~~~~  172 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRALLELQVSKEDL  172 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHHHTSCCCHHHH
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H--cCCCeEEEEECcccccccHHhhHHHH
Confidence            468999999999998888899999999999999877766655554332 2  37999999999996432333444443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=4.1e-06  Score=63.49  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=53.9

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG   68 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~   68 (170)
                      +.|.||||+..|..-....++-+|++|+|+|..+.-.-...+-| +....  .++|.+++.||+|..+
T Consensus        73 ~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~--~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          73 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK--YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             EEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT--TTCCEEEEEECTTSTT
T ss_pred             EEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH--cCCCEEEEEecccccc
Confidence            46899999999999888889999999999999987666665566 33333  3799999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=5e-06  Score=57.90  Aligned_cols=81  Identities=15%  Similarity=-0.032  Sum_probs=55.5

Q ss_pred             hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCc
Q psy17235         19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEP   98 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~   98 (170)
                      +...+++++++.|.++...-  ...+...+.+  ...|.++|.||.|+.. .+.......+.+...++...++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~--~~~~~i~v~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD--DEMVLNKLRE--GKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH--HHHHHHHHHS--SSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccchh--HHHHHHHhhh--ccCceeeeeeeeeccc-hhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            34567888888887754322  2223333332  4678899999999876 44434456677777788777888999999


Q ss_pred             chhhhH
Q psy17235         99 QEVVEA  104 (170)
Q Consensus        99 ~~v~~~  104 (170)
                      .|+++.
T Consensus       157 ~gi~~L  162 (179)
T d1egaa1         157 LNVDTI  162 (179)
T ss_dssp             TTHHHH
T ss_pred             CCHHHH
Confidence            999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.03  E-value=2.8e-06  Score=64.09  Aligned_cols=64  Identities=14%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~   67 (170)
                      +.++||||+..|..-....++-+|++|+|+|..+.-.-...+.|. ...+  .++|.+++.||+|..
T Consensus        69 ~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          69 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH--TTCCEEEEEECGGGC
T ss_pred             eeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh--ccccccccccccccc
Confidence            468999999999998888999999999999999876666555553 2333  379999999999964

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=8.4e-05  Score=55.69  Aligned_cols=76  Identities=14%  Similarity=0.081  Sum_probs=53.5

Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh---cCCCeEEEc
Q psy17235         17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR---RSSRRFKPQ   93 (170)
Q Consensus        17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~---~~~~~~~e~   93 (170)
                      ...+..+|.||.|.|..+|.|..+  ..+.++   ..+.|+|+|.||+|+.+      .+....|.+.   .+. .++.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~~Kp~IlVlNK~DLv~------~~~~~~w~~~f~~~~~-~~i~i   77 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LKNKPRIMLLNKADKAD------AAVTQQWKEHFENQGI-RSLSI   77 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CSSSCEEEEEECGGGSC------HHHHHHHHHHHHTTTC-CEEEC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---HcCCCeEEEEECccCCc------hHHHHHHHHHHHhcCC-cccee
Confidence            446889999999999999877654  233332   34679999999999865      2333334433   333 46678


Q ss_pred             ccCCcchhhhH
Q psy17235         94 EVVEPQEVVEA  104 (170)
Q Consensus        94 Sa~~~~~v~~~  104 (170)
                      |+.++.++...
T Consensus        78 sa~~~~~~~~~   88 (273)
T d1puja_          78 NSVNGQGLNQI   88 (273)
T ss_dssp             CTTTCTTGGGH
T ss_pred             ecccCCCcccc
Confidence            99999988865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.60  E-value=5.1e-05  Score=54.93  Aligned_cols=102  Identities=14%  Similarity=0.011  Sum_probs=57.6

Q ss_pred             eEEecCCccccccchhh---h--ccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235          2 QLWDTGGMERVASITSS---Y--YKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV   73 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~---~--~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v   73 (170)
                      .+.|+||+..+......   .  ....++++++.|..   ++.++.........+... -..|.++|.||+|+... ...
T Consensus        98 ~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ivvinK~D~~~~-~~~  175 (244)
T d1yrba1          98 VLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSE-EEK  175 (244)
T ss_dssp             EEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCH-HHH
T ss_pred             eeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH-hCCCceeeeeccccccH-HHH
Confidence            46899999765332222   1  22466889999864   455544332222211111 37899999999998751 110


Q ss_pred             CH--------------------------HHHHHHHH-hcCCCeEEEcccCCcchhhhHH
Q psy17235         74 TE--------------------------ADMENFWS-RRSSRRFKPQEVVEPQEVVEAE  105 (170)
Q Consensus        74 ~~--------------------------~~~~~~a~-~~~~~~~~e~Sa~~~~~v~~~~  105 (170)
                      ..                          ........ ..+...++.+||++|+|+++..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~  234 (244)
T d1yrba1         176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLE  234 (244)
T ss_dssp             HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHH
Confidence            00                          00000111 1234457789999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=0.00024  Score=51.86  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             hccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC-CCeEEEcccC
Q psy17235         19 YYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS-SRRFKPQEVV   96 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~-~~~~~e~Sa~   96 (170)
                      -..+.|.+++|+++.+| -+...+.+|+-....  .++|.+||.||+||.+ ..  ..+....+...+. .-..+.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~-~~--~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYD-ED--DLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCC-HH--HHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCC-HH--HHHHHHHhhcccccceeEEEeccc
Confidence            45789999999999886 456667777655444  4899999999999965 11  1122333333332 2235678999


Q ss_pred             CcchhhhH
Q psy17235         97 EPQEVVEA  104 (170)
Q Consensus        97 ~~~~v~~~  104 (170)
                      ++.++++.
T Consensus        82 ~~~g~~~L   89 (225)
T d1u0la2          82 TGMGIEEL   89 (225)
T ss_dssp             TCTTHHHH
T ss_pred             cchhHhhH
Confidence            99998865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.26  E-value=0.00025  Score=51.95  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=55.8

Q ss_pred             hccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH---HHhcCCCeEEEcc
Q psy17235         19 YYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF---WSRRSSRRFKPQE   94 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~---a~~~~~~~~~e~S   94 (170)
                      -..+.|.+++|++..+| -++..+.+++-....  .++|.+||.||+||.+ . .-..+....+   ....|.+ .+.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~-~-~~~~~~~~~~~~~y~~~g~~-v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIE-D-QDTEDTIQAYAEDYRNIGYD-VYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCC-C-HHHHHHHHHHHHHHHHHTCC-EEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccc-c-HHHHHHHHHHHHHHhhcccc-ceeee
Confidence            35789999999999886 466777777654433  4899999999999976 2 1111222333   2345765 45689


Q ss_pred             cCCcchhhhH
Q psy17235         95 VVEPQEVVEA  104 (170)
Q Consensus        95 a~~~~~v~~~  104 (170)
                      ++++.++++.
T Consensus        82 a~~~~gl~~L   91 (231)
T d1t9ha2          82 SKDQDSLADI   91 (231)
T ss_dssp             HHHHTTCTTT
T ss_pred             cCChhHHHHH
Confidence            9999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.80  E-value=0.013  Score=44.59  Aligned_cols=79  Identities=6%  Similarity=-0.003  Sum_probs=45.2

Q ss_pred             hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc---------CCCe
Q psy17235         19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR---------SSRR   89 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~---------~~~~   89 (170)
                      ....+|.+++|......+..+...   .-+.    .++=++|.||+|+.+ ...........+....         ..+.
T Consensus       161 ~~~~~D~~v~v~~p~~GD~iQ~~k---~gil----E~aDi~vvNKaD~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  232 (323)
T d2qm8a1         161 VADLTDFFLVLMLPGAGDELQGIK---KGIF----ELADMIAVNKADDGD-GERRASAAASEYRAALHILTPPSATWTPP  232 (323)
T ss_dssp             HHTTSSEEEEEECSCC------CC---TTHH----HHCSEEEEECCSTTC-CHHHHHHHHHHHHHHHTTBCCSBTTBCCC
T ss_pred             hhcccceEEEEeeccchhhhhhhh---hhHh----hhhheeeEecccccc-chHHHHHHHHHHHHHhhcccccccCCCCc
Confidence            345699999999888765544321   1111    234578899999876 2222222222222221         2356


Q ss_pred             EEEcccCCcchhhhHH
Q psy17235         90 FKPQEVVEPQEVVEAE  105 (170)
Q Consensus        90 ~~e~Sa~~~~~v~~~~  105 (170)
                      .+.+||++++|+++..
T Consensus       233 V~~~Sa~~g~Gi~el~  248 (323)
T d2qm8a1         233 VVTISGLHGKGLDSLW  248 (323)
T ss_dssp             EEEEBTTTTBSHHHHH
T ss_pred             eEEEEecCCCCHHHHH
Confidence            8899999999999873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0019  Score=44.10  Aligned_cols=79  Identities=9%  Similarity=-0.018  Sum_probs=45.7

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC--HHHHHHHHHhc-CCCeEEEcccCCc
Q psy17235         22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT--EADMENFWSRR-SSRRFKPQEVVEP   98 (170)
Q Consensus        22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~--~~~~~~~a~~~-~~~~~~e~Sa~~~   98 (170)
                      ..+.++.+.+......... ..++..+..  ...|+++++||+|+.+ .....  .+...+..... +...++.+||++|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~k~D~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD-QQMIEWAVD--SNIAVLVLLTKADKLA-SGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSC-HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             heeEEEEeecccccchhHH-HHHHHHhhh--ccccccchhhhhhccC-HHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            4455556666555443322 334444433  3688999999999865 21111  12222223333 3446778999999


Q ss_pred             chhhhH
Q psy17235         99 QEVVEA  104 (170)
Q Consensus        99 ~~v~~~  104 (170)
                      .||++.
T Consensus       174 ~Gid~L  179 (188)
T d1puia_         174 QGVDKL  179 (188)
T ss_dssp             BSHHHH
T ss_pred             CCHHHH
Confidence            999976

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0011  Score=52.21  Aligned_cols=61  Identities=11%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             CeEEecCCcccccc-----chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMERVAS-----ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~~~~-----~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.||||||-.....     +....+..+|.+|++.|..-.+.  . ..++..+.+.  +.|+++|.||+|.
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~~--~k~~~~V~nK~D~  174 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKN--D-IDIAKAISMM--KKEFYFVRTKVDS  174 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHH--H-HHHHHHHHHT--TCEEEEEECCHHH
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHH--H-HHHHHHHHHc--CCCEEEEEeCccc
Confidence            36999999654222     22334567899888877432222  1 1333444443  7899999999995

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.013  Score=44.55  Aligned_cols=79  Identities=11%  Similarity=0.051  Sum_probs=42.9

Q ss_pred             hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHHHHHHHh------cCCCeE
Q psy17235         19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADMENFWSR------RSSRRF   90 (170)
Q Consensus        19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~~~~a~~------~~~~~~   90 (170)
                      ....+|.+++|.+...-+..+.+   ..-+.+    ++=++|.||+|+.. ....  ...+.......      ...|..
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~---k~gi~e----~aDi~VvNKaD~~~-~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGI---KKGLME----VADLIVINKDDGDN-HTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC------CCC---CHHHHH----HCSEEEECCCCTTC-HHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCchhhhhh---chhhhc----cccEEEEEeecccc-hHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            45679999999875444433322   222222    23467789999875 1111  11122222211      122568


Q ss_pred             EEcccCCcchhhhHH
Q psy17235         91 KPQEVVEPQEVVEAE  105 (170)
Q Consensus        91 ~e~Sa~~~~~v~~~~  105 (170)
                      +.|||.+|+|+++..
T Consensus       236 ~~~SA~~g~Gi~eL~  250 (327)
T d2p67a1         236 LTCSALEKRGIDEIW  250 (327)
T ss_dssp             EECBGGGTBSHHHHH
T ss_pred             EEEEeeCCCCHHHHH
Confidence            899999999999863

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.89  E-value=0.036  Score=40.39  Aligned_cols=73  Identities=14%  Similarity=0.040  Sum_probs=39.7

Q ss_pred             CeEEecCCccccc-------cchh--hhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhC-C--CCeEEEEeeCCCCC
Q psy17235          1 MQLWDTGGMERVA-------SITS--SYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYA-E--NAKIFLCGNKSDLE   67 (170)
Q Consensus         1 l~iwDt~G~e~~~-------~~~~--~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~-~--~~pvvlvgnK~Dl~   67 (170)
                      +.++||||-....       ....  ......+++++|++++... +-.. ...+..+.... +  --+++||.||+|..
T Consensus        82 i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~  160 (257)
T d1h65a_          82 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFS  160 (257)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             EEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccC
Confidence            4689999953211       1111  1234578899998877542 2111 22233333222 1  24789999999986


Q ss_pred             CCCCCCCH
Q psy17235         68 GTTPQVTE   75 (170)
Q Consensus        68 ~~~~~v~~   75 (170)
                      . ....+.
T Consensus       161 ~-~~~~~~  167 (257)
T d1h65a_         161 P-PDGLPY  167 (257)
T ss_dssp             C-GGGCCH
T ss_pred             C-cCCCcH
Confidence            5 334443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.86  E-value=0.0096  Score=44.39  Aligned_cols=66  Identities=20%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             CeEEecCCccc-------------cccchhhhccCCcEEEEEEe-CCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMER-------------VASITSSYYKFAEAAILVFS-LDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~-------------~~~~~~~~~~~ad~iilv~D-~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.|+||||--.             ...++..|+.+++.+++++. .+....-.....+...+..  ...++++|.||+|.
T Consensus       133 l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D~  210 (306)
T d1jwyb_         133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDL  210 (306)
T ss_dssp             EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTS
T ss_pred             ceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEecccc
Confidence            46899999422             23577789999998777764 3322222223344444432  24689999999998


Q ss_pred             CC
Q psy17235         67 EG   68 (170)
Q Consensus        67 ~~   68 (170)
                      ..
T Consensus       211 ~~  212 (306)
T d1jwyb_         211 MD  212 (306)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.017  Score=42.75  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             CeEEecCCccc-------------cccchhhhccCCcEE-EEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235          1 MQLWDTGGMER-------------VASITSSYYKFAEAA-ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL   66 (170)
Q Consensus         1 l~iwDt~G~e~-------------~~~~~~~~~~~ad~i-ilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl   66 (170)
                      +.|+||||--.             ...+...|+...+.+ ++|.+.+..-+-..+..|...+...  ..++++|.||+|.
T Consensus       127 l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D~  204 (299)
T d2akab1         127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDL  204 (299)
T ss_dssp             EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGGG
T ss_pred             eeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEecccc
Confidence            35899999421             224566777777754 5566665554444455565554332  4678999999998


Q ss_pred             CC
Q psy17235         67 EG   68 (170)
Q Consensus        67 ~~   68 (170)
                      ..
T Consensus       205 ~~  206 (299)
T d2akab1         205 MD  206 (299)
T ss_dssp             SC
T ss_pred             cc
Confidence            76

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.82  E-value=1.3  Score=30.21  Aligned_cols=73  Identities=14%  Similarity=0.036  Sum_probs=47.9

Q ss_pred             eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCCCHHHHHH
Q psy17235          2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQVTEADMEN   80 (170)
Q Consensus         2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v~~~~~~~   80 (170)
                      -|+|+++...  ......+..+|.++++... +..++..+...+..+.+  .++|++ +|.|+.+..+  +.+.....+.
T Consensus       115 IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~--~~~~~~giv~N~~~~~~--~~~~~~~~~~  187 (237)
T d1g3qa_         115 ILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK--AGLAILGFVLNRYGRSD--RDIPPEAAED  187 (237)
T ss_dssp             EEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH--TTCEEEEEEEEEETSCT--TCCCHHHHHH
T ss_pred             EEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhh--hhhhhhhhhhccccccc--chhhhHHHHh
Confidence            4789887643  2333446679999998875 46677777666665554  367766 7889998654  4455555444


Q ss_pred             H
Q psy17235         81 F   81 (170)
Q Consensus        81 ~   81 (170)
                      +
T Consensus       188 ~  188 (237)
T d1g3qa_         188 V  188 (237)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=86.57  E-value=1.9  Score=28.70  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             CChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235         33 DNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE   97 (170)
Q Consensus        33 t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~   97 (170)
                      +|+.+++..-...-++... ..-|+|++|.-....+     ..++..+++...++|.+....++.
T Consensus         3 sd~~~l~~~v~~~~~~l~~-AkrPvIi~G~g~~~~~-----a~~~l~~lae~~~~Pv~tt~~gkg   61 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN-RDKVAVLVGSKLRAAG-----AEEAAVKFTDALGGAVATMAAAKS   61 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-CSCEEEEECTTTTTTT-----CHHHHHHHHHHHCCCEEEEGGGTT
T ss_pred             CChHHHHHHHHHHHHHHHc-CCCEEEEECcCccccc-----hHHHHHHHHHhhceeEEecccccc
Confidence            5667766554333222222 4789999999997543     578999999999999876665553