Psyllid ID: psy17252

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------
MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKEAKKSKDEIQNNNNCPEVTNENDKKSQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHEEEEEEccccEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccccHHHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccc
ccccccEEEccccccEEccccccEEccccccEEccccccEcccccccEcccccccEccccccEEEcccccEEEcccccEEEEccccEEEEccccEEEcccccEEEEcccccEcccccccEcccccccEEccccccEEccccccEccccccHHHHHHEEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHccccccHHHHHccccccccccccHcccccHHHHHHccccHcccccccHHHccccHHHHHccHHHcccccccEcEcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHcEEEHHccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEHHccHHHHHHcccHHHHHcccccccccccEEEEccccEEEcccccccccccccccccccHHHcccccccHEEEEEEccHHHHHcccHHHHccccHEEEccHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHccHHHHHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccc
mekctpicltectpvcltectpicltectpvcltectpicltectpicltectpicltertpvcltectpicltectpvcltectpvyltectpvcltectpiyltectpicltectpicltectpicltectpvcltectpvcltectpvSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVslsaplsctpicltectpicltectpicltectpicltectpicltectpicltectpvcltectpiyltectpicltectpiyltectpicltectptcltectpicltectpvcltectpvcftkctpvcltectpicltectlvcltkctpvcftkctpvcftkctpvcftkctpicltectpvcltectpvcftkctpvcltectpvcltectpvcftkctpvcltectpvcpsectpvcltectpvcftkctpicltectpvcftkctpicltectpiCLVLLSAPLFVLLSAPLfvllsaplfvslsapLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALlfvspsaplfvlLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLsaplfvslsapLFVLRSALLFVLLNErtrgwlmvdspiptlaYTLIYLSIVTigprlmrdrkpykltsILVPYNMLMCALNLYIAIELLVASTRLKysyvcqpvtyvNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIgikwvpsgstflPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILgvngiksgcdfPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKEAKKSkdeiqnnnncpevtnendkksq
mekctpicltectpvclTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTigprlmrdrkPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKeakkskdeiqnnnncpevtnendkksq
MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPvsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsvllsallfvslsaplsCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYltectpicltectptcltectpicltectpVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPIClvllsaplfvllsaplfvllsaplfvslsaplFVLRsallfvllsaplfvllsaplsvllsallfvspsaplfvllsaplfvllsallfvllsaplfvlRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHkvfkihkekeakkskdeIQnnnncpevtnenDKKSQ
***CTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIH******************************
*EKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYA*****************************************
MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEK*********QNNNNCP***********
**KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKV**********************************
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MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKEAKKSKDEIQNNNNCPEVTNENDKKSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1076 2.2.26 [Sep-21-2011]
Q9GZR5314 Elongation of very long c yes N/A 0.228 0.783 0.422 8e-68
Q3S8M4314 Elongation of very long c yes N/A 0.228 0.783 0.418 1e-67
Q95K73314 Elongation of very long c N/A N/A 0.228 0.783 0.418 1e-67
Q9EQC4312 Elongation of very long c yes N/A 0.255 0.881 0.397 2e-67
Q920L7299 Elongation of very long c no N/A 0.234 0.842 0.369 1e-56
Q8BHI7299 Elongation of very long c no N/A 0.234 0.842 0.369 2e-56
Q9NYP7299 Elongation of very long c no N/A 0.234 0.842 0.378 8e-56
Q5M8U1295 Elongation of very long c no N/A 0.229 0.837 0.382 2e-54
Q5RFL5299 Elongation of very long c no N/A 0.234 0.842 0.372 3e-54
Q4R516299 Elongation of very long c N/A N/A 0.234 0.842 0.375 3e-54
>sp|Q9GZR5|ELOV4_HUMAN Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1 Back     alignment and function desciption
 Score =  259 bits (662), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 130/308 (42%), Positives = 169/308 (54%), Gaps = 62/308 (20%)

Query: 748  LLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNL 807
            + ++R   W ++ SP PTL+ + +YL  V +GP+ M+DR+P+++  +L+ YN  M  LNL
Sbjct: 32   IADKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNL 91

Query: 808  YIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRV 867
            +I  EL + S    YSY+                           CQ V Y N   E+R 
Sbjct: 92   FIFRELFMGSYNAGYSYI---------------------------CQSVDYSNNVHEVR- 123

Query: 868  SSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHV 927
                                    IA A+WWY+ SK +E+ DT FFILRKK+ Q++FLHV
Sbjct: 124  ------------------------IAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHV 159

Query: 928  YHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLT 987
            YHH TMF LWWIGIKWV  G  F  A +NSFIHV+MYSYY L A GP I KYLWWK+YLT
Sbjct: 160  YHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLT 219

Query: 988  ILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHK 1047
            +LQLIQF   +      + + C FP WM + L+ Y I+FI LF NFY + Y         
Sbjct: 220  MLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTY--------- 270

Query: 1048 EKEAKKSK 1055
             KE KK K
Sbjct: 271  -KEPKKPK 277
Condensing enzyme that elongates saturated and monounsaturated very long chain fatty acids (VLCFAs). Elongates C24:0 and C26:0 acyl-CoAs. Seems to represent a photoreceptor-specific component of the fatty acid elongation system residing on the endoplasmic reticulum. May be implicated in docosahexaenoic acid (DHA) biosynthesis, which requires dietary consumption of the essential alpha-linolenic acid and a subsequent series of three elongation steps. May play a critical role in early brain and skin development.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: nEC: 8
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 Back     alignment and function description
>sp|Q95K73|ELOV4_MACFA Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQC4|ELOV4_MOUSE Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=1 SV=2 Back     alignment and function description
>sp|Q920L7|ELOV5_RAT Elongation of very long chain fatty acids protein 5 OS=Rattus norvegicus GN=Elovl5 PE=2 SV=1 Back     alignment and function description
>sp|Q8BHI7|ELOV5_MOUSE Elongation of very long chain fatty acids protein 5 OS=Mus musculus GN=Elovl5 PE=1 SV=1 Back     alignment and function description
>sp|Q9NYP7|ELOV5_HUMAN Elongation of very long chain fatty acids protein 5 OS=Homo sapiens GN=ELOVL5 PE=1 SV=1 Back     alignment and function description
>sp|Q5M8U1|ELOV5_XENTR Elongation of very long chain fatty acids protein 5 OS=Xenopus tropicalis GN=elovl5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFL5|ELOV5_PONAB Elongation of very long chain fatty acids protein 5 OS=Pongo abelii GN=ELOVL5 PE=2 SV=1 Back     alignment and function description
>sp|Q4R516|ELOV5_MACFA Elongation of very long chain fatty acids protein 5 OS=Macaca fascicularis GN=ELOVL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1076
350397539316 PREDICTED: elongation of very long chain 0.241 0.822 0.637 1e-110
383855576316 PREDICTED: elongation of very long chain 0.241 0.822 0.637 1e-110
340715339316 PREDICTED: elongation of very long chain 0.241 0.822 0.637 1e-110
328713854288 PREDICTED: elongation of very long chain 0.223 0.833 0.654 1e-110
380019917316 PREDICTED: elongation of very long chain 0.242 0.825 0.638 1e-109
332020335321 Elongation of very long chain fatty acid 0.236 0.791 0.624 1e-109
328782201319 PREDICTED: elongation of very long chain 0.242 0.818 0.638 1e-109
242017877269 elongation of very long chain fatty acid 0.224 0.899 0.642 1e-108
345489092318 PREDICTED: LOW QUALITY PROTEIN: elongati 0.237 0.805 0.646 1e-108
307176607320 Elongation of very long chain fatty acid 0.242 0.815 0.628 1e-106
>gi|350397539|ref|XP_003484909.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/312 (63%), Positives = 227/312 (72%), Gaps = 52/312 (16%)

Query: 748  LLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNL 807
            L +ERTRGWL+VDSP PTL YT++YL IV  GP++MR+RK +KLT  LVPYN+ M  LN 
Sbjct: 25   LADERTRGWLLVDSPKPTLIYTMLYLLIVWAGPKIMRNRKAFKLTWALVPYNLAMACLNA 84

Query: 808  YIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRV 867
            YIAI+L VAST                           RL+YSYVCQP+ +V   +EL  
Sbjct: 85   YIAIQLFVAST---------------------------RLRYSYVCQPIRHVTRPDEL-- 115

Query: 868  SSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHV 927
                                   +IA+AVWWYYFSKLLEFCDTFFFILRKKD QL+FLHV
Sbjct: 116  -----------------------QIAHAVWWYYFSKLLEFCDTFFFILRKKDNQLSFLHV 152

Query: 928  YHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLT 987
            YHHSTMF LWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYY LAALGP +AKYLWWKKYLT
Sbjct: 153  YHHSTMFSLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYGLAALGPSVAKYLWWKKYLT 212

Query: 988  ILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHK 1047
            ILQLIQFTTALILG+NGI+SGCDFPLWMQY LV YM++FIVLFGNFYAKAYI K  + + 
Sbjct: 213  ILQLIQFTTALILGINGIRSGCDFPLWMQYALVIYMVSFIVLFGNFYAKAYIAKGKQAYA 272

Query: 1048 EKEAKKSKDEIQ 1059
            E++ +K K + Q
Sbjct: 273  ERQLEKMKADTQ 284

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855576|ref|XP_003703286.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340715339|ref|XP_003396173.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328713854|ref|XP_003245194.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380019917|ref|XP_003693847.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Apis florea] Back     alignment and taxonomy information
>gi|332020335|gb|EGI60757.1| Elongation of very long chain fatty acids protein 4 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328782201|ref|XP_395160.3| PREDICTED: elongation of very long chain fatty acids protein 4-like [Apis mellifera] Back     alignment and taxonomy information
>gi|242017877|ref|XP_002429411.1| elongation of very long chain fatty acids protein, putative [Pediculus humanus corporis] gi|212514335|gb|EEB16673.1| elongation of very long chain fatty acids protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|345489092|ref|XP_001600743.2| PREDICTED: LOW QUALITY PROTEIN: elongation of very long chain fatty acids protein 4-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307176607|gb|EFN66075.1| Elongation of very long chain fatty acids protein 4 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1076
UNIPROTKB|A5PKE6314 ELOVL4 "ELOVL4 protein" [Bos t 0.139 0.477 0.58 2.2e-69
UNIPROTKB|F1RQL1309 F1RQL1 "Uncharacterized protei 0.139 0.485 0.586 1.8e-68
UNIPROTKB|F1NXS3280 ELOVL4 "Uncharacterized protei 0.139 0.535 0.6 1.9e-68
UNIPROTKB|I3LVJ0304 LOC100623120 "Uncharacterized 0.139 0.493 0.586 2.3e-68
UNIPROTKB|Q9GZR5314 ELOVL4 "Elongation of very lon 0.139 0.477 0.586 3e-68
UNIPROTKB|Q3S8M4314 ELOVL4 "Elongation of very lon 0.139 0.477 0.586 3.3e-68
UNIPROTKB|Q95K73314 ELOVL4 "Elongation of very lon 0.139 0.477 0.586 3.3e-68
UNIPROTKB|J9PBB9314 ELOVL4 "Uncharacterized protei 0.139 0.477 0.58 3.8e-68
RGD|1305630314 Elovl4 "ELOVL fatty acid elong 0.139 0.477 0.58 4.9e-68
ZFIN|ZDB-GENE-040426-1767309 elovl4a "elongation of very lo 0.139 0.485 0.573 5e-68
UNIPROTKB|A5PKE6 ELOVL4 "ELOVL4 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 507 (183.5 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
 Identities = 87/150 (58%), Positives = 109/150 (72%)

Query:   889 DYKIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGS 948
             + +IA A+WWY+ SK +E+ DT FFILRKK+ Q++FLHVYHH TMF LWWIGIKWV  G 
Sbjct:   121 EVRIAAALWWYFISKGIEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ 180

Query:   949 TFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGIKSG 1008
              F  A +NSFIHV+MYSYY LAA GP I KYLWWK+YLT+LQL+QF   +      + + 
Sbjct:   181 AFFGAQINSFIHVIMYSYYGLAAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYTD 240

Query:  1009 CDFPLWMQYLLVFYMITFIVLFGNFYAKAY 1038
             C FP WM + L+ Y ++FI LF NFY + Y
Sbjct:   241 CPFPKWMHWALIVYAVSFIFLFLNFYVRTY 270
GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA
GO:0019367 "fatty acid elongation, saturated fatty acid" evidence=IEA
UNIPROTKB|F1RQL1 F1RQL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXS3 ELOVL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LVJ0 LOC100623120 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZR5 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3S8M4 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K73 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBB9 ELOVL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1305630 Elovl4 "ELOVL fatty acid elongase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1767 elovl4a "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1076
pfam01151244 pfam01151, ELO, GNS1/SUR4 family 6e-73
PTZ00251272 PTZ00251, PTZ00251, fatty acid elongase; Provision 9e-12
COG1668407 COG1668, NatB, ABC-type Na+ efflux pump, permease 6e-04
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 7e-04
COG3356578 COG3356, COG3356, Predicted membrane protein [Func 7e-04
pfam12679263 pfam12679, ABC2_membrane_2, ABC-2 family transport 7e-04
COG1807535 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe 8e-04
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 0.001
COG0658453 COG0658, ComEC, Predicted membrane metal-binding p 0.001
pfam12679263 pfam12679, ABC2_membrane_2, ABC-2 family transport 0.002
COG0842286 COG0842, COG0842, ABC-type multidrug transport sys 0.002
COG0842286 COG0842, COG0842, ABC-type multidrug transport sys 0.002
pfam10101738 pfam10101, DUF2339, Predicted membrane protein (DU 0.002
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 0.003
pfam01027205 pfam01027, Bax1-I, Inhibitor of apoptosis-promotin 0.003
pfam03772270 pfam03772, Competence, Competence protein 0.003
pfam09678241 pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 as 0.003
pfam09678241 pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 as 0.003
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 0.004
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family Back     alignment and domain information 
 Score =  241 bits (618), Expect = 6e-73
 Identities = 96/293 (32%), Positives = 140/293 (47%), Gaps = 62/293 (21%)

Query: 757  LMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVA 816
             ++ SP P +   ++YL  V +GP++MR+RKP+ L  +L+ +N+ +  L+LY    LL  
Sbjct: 1    PLLSSPWPVILIIVLYLVFVFLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLAG 60

Query: 817  STRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLIS 876
            +   +  Y+   V Y      +R                                     
Sbjct: 61   AGWGRGLYLALCVCYSFDPGAIR------------------------------------- 83

Query: 877  NLAINDCFLQRLDYKIANAVWWY--YFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMF 934
                           +    +WY  + SK LE  DT F +LRKK  QL+FLHVYHH+TM 
Sbjct: 84   ---------------MGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATML 128

Query: 935  FLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQF 994
               W+G+K+ P G  +  A++NSF+HV+MY YY LAALG      +WWKKY+T LQ+IQF
Sbjct: 129  LYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQIIQF 187

Query: 995  TTALI----LGVNGIKSGCD--FPLWMQYLLVFYMITFIVLFGNFYAKAYIHK 1041
               L        N  K GC   FP  +  L + Y ++++ LF NFY K+Y   
Sbjct: 188  VLGLAHVGYALYNYTKGGCGGPFPKAV-RLGLVYYVSYLFLFLNFYIKSYKKP 239

Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 affects plasma membrane H+-ATPase activity, and may act on a glucose-signaling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1. Length = 244
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional Back     alignment and domain information
>gnl|CDD|224582 COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein Back     alignment and domain information
>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein Back     alignment and domain information
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339) Back     alignment and domain information
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1 Back     alignment and domain information
>gnl|CDD|217721 pfam03772, Competence, Competence protein Back     alignment and domain information
>gnl|CDD|220340 pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Back     alignment and domain information
>gnl|CDD|220340 pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1076
KOG3071|consensus274 100.0
PF01151250 ELO: GNS1/SUR4 family; InterPro: IPR002076 This gr 100.0
PTZ00251272 fatty acid elongase; Provisional 100.0
KOG3072|consensus282 100.0
KOG3187|consensus223 93.8
KOG3030|consensus317 89.61
PF15042111 LELP1: Late cornified envelope-like proline-rich p 82.05
PLN02838221 3-hydroxyacyl-CoA dehydratase subunit of elongase 81.75
>KOG3071|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-62  Score=529.23  Aligned_cols=250  Identities=39%  Similarity=0.683  Sum_probs=225.6

Q ss_pred             hcCccccCCccccCchHHHHHHHhhhhhhhhcccccCCCCCccccccceehhhHHHHHHHHHHHHHHHHHhcc-CcEEEE
Q psy17252        748 LLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRL-KYSYVC  826 (1076)
Q Consensus       748 ~~D~r~~~w~l~~sp~~~i~I~i~YL~vV~lgprlMknRKPf~LK~~lilyNl~LvvfS~~~~~~~l~~~~~~-~y~~~C  826 (1076)
                      ..|+|+. |+++++|++.+.++++|++++++||++||||||++||+++.+||+.|+++|++++.+.....+.. +|++.|
T Consensus        17 ~~~~~v~-~~~l~s~~~~~~il~~yl~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c   95 (274)
T KOG3071|consen   17 SPDDRVR-SPLLSSPWPLLSILLAYLFVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRC   95 (274)
T ss_pred             CCCcccc-chhccCcHHHHHHHHHHHHHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence            4577776 99999999999999999999999999999999999999999999999999999877766666554 688889


Q ss_pred             eccCCCCChHHHHHHHHhhccccccccccccccccchhhhhcccccccccccccchhhhhchhhhhhHHHHHHHHhhhhh
Q psy17252        827 QPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLE  906 (1076)
Q Consensus       827 ~~~~~s~~~~~l~~lv~~~rl~~~~vc~p~~y~~t~~~l~~~~~t~~~~~~~a~~~~~~~r~~~~~~~~~wlFYLSK~~E  906 (1076)
                      ++.++++++.                                                    +.++.+|.|+||+||+.|
T Consensus        96 ~~~~~~~~~~----------------------------------------------------~~r~~~~~~~yylsKfle  123 (274)
T KOG3071|consen   96 QPCFPSDHEP----------------------------------------------------KLRERFWSYLYYLSKFLE  123 (274)
T ss_pred             EecCCCCCCc----------------------------------------------------ceeehHHHHHHHHHHHHH
Confidence            8865443321                                                    126789999999999999


Q ss_pred             hcchhhhhhccCCCCceeEeeehhhhHhHHhhheeEeccCccchhhhHHhHHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q psy17252        907 FCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYL  986 (1076)
Q Consensus       907 LlDTVF~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~f~~llNS~VHvIMYsYY~LsAlG~rvpk~LwwKr~I  986 (1076)
                      ++||+|||||||+||+||||+|||+.|+..+|.+++|.++|+.++.+.+|++||+|||+||+++|+|+|+++++||||++
T Consensus       124 l~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~  203 (274)
T KOG3071|consen  124 LLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYI  203 (274)
T ss_pred             HHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHH
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHhhhheeeeee-ccc-CCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhccccCccchhhhh
Q psy17252        987 TILQLIQFTTALILGVNG-IKS-GCDFPLW-MQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKE 1050 (1076)
Q Consensus       987 T~lQIvQFviglv~~~~~-l~~-~C~~p~~-~~~~~~~y~~SfL~LF~nFY~ksYlkk~~k~~~~~~ 1050 (1076)
                      |.+|++||++..+|..+. ++. +|.+|++ +.+.+..+.++|++||.|||+|+|+|++++++|+++
T Consensus       204 t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~  270 (274)
T KOG3071|consen  204 TIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKA  270 (274)
T ss_pred             HHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            999999999999998887 665 8999988 888888889999999999999999998777655444

>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established Back     alignment and domain information
>PTZ00251 fatty acid elongase; Provisional Back     alignment and domain information
>KOG3072|consensus Back     alignment and domain information
>KOG3187|consensus Back     alignment and domain information
>KOG3030|consensus Back     alignment and domain information
>PF15042 LELP1: Late cornified envelope-like proline-rich protein 1 Back     alignment and domain information
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1076
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 4e-07
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 8e-07
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 9e-07
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 4e-06
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 8e-05
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 7e-04
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 7e-04
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 4e-07
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 5e-07
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 6e-07
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 3e-06
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 2e-04
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 3e-04
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 9e-04
2dtg_E897 Insulin receptor; IR ectodomain, X-RAY crystallogr 2e-06
2dtg_E 897 Insulin receptor; IR ectodomain, X-RAY crystallogr 5e-06
2dtg_E897 Insulin receptor; IR ectodomain, X-RAY crystallogr 2e-05
2dtg_E897 Insulin receptor; IR ectodomain, X-RAY crystallogr 4e-05
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 3e-06
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 5e-05
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 9e-05
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 1e-04
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 3e-04
1m6b_A621 C-ER, receptor protein-tyrosine kinase ERBB-3; cel 7e-04
3i2t_A551 Epidermal growth factor receptor, isoform A; EGFR, 5e-06
3i2t_A551 Epidermal growth factor receptor, isoform A; EGFR, 2e-05
3i2t_A551 Epidermal growth factor receptor, isoform A; EGFR, 2e-04
3i2t_A551 Epidermal growth factor receptor, isoform A; EGFR, 3e-04
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 8e-06
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 1e-05
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 6e-05
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 1e-04
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 2e-04
2hr7_A486 Insulin receptor; hormone receptor, leucine rich r 4e-04
1igr_A478 Insulin-like growth factor receptor 1; hormone rec 1e-05
1igr_A478 Insulin-like growth factor receptor 1; hormone rec 2e-05
1igr_A478 Insulin-like growth factor receptor 1; hormone rec 6e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 2e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 2e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 4e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 5e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 5e-05
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 2e-04
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 6e-04
2ahx_A617 P180ERBB4, receptor tyrosine-protein kinase ERBB-4 9e-04
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 29/205 (14%), Positives = 39/205 (19%), Gaps = 2/205 (0%)

Query: 413 CTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPI 472
                 T  +  C           C      +C  +  T CT  C      +    C   
Sbjct: 159 APVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQ 218

Query: 473 CLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTK 532
           C   CT    + C        + +C   C  +          +   P         C T 
Sbjct: 219 CAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD-TFESMHNPEGRYTFGASCVTT 277

Query: 533 CTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPI 592
           C    L+     C   C P             C   C   C  VC               
Sbjct: 278 CPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEK-CSKPCARVCYGLGMEHLRGARAIT 336

Query: 593 CLTECTPVCFTKCTPICLTECTPIC 617
                      K             
Sbjct: 337 SDNVQEFDGCKKIFGSLAFLPESFD 361
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Back     alignment and structure
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 Back     alignment and structure
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 Back     alignment and structure
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 Back     alignment and structure
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621 Back     alignment and structure
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551 Back     alignment and structure
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551 Back     alignment and structure
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551 Back     alignment and structure
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Back     alignment and structure
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478 Back     alignment and structure
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478 Back     alignment and structure
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1076
1mox_A501 Epidermal growth factor receptor; EGFR, receptor, 90.36
1n8y_C608 Protooncoprotein; tyrosin kinase receptor, cell su 89.05
1yy9_A624 Epidermal growth factor receptor; cell surface rec 84.32
3i2t_A551 Epidermal growth factor receptor, isoform A; EGFR, 84.18
2dtg_E 897 Insulin receptor; IR ectodomain, X-RAY crystallogr 80.41
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Back     alignment and structure
Probab=90.36  E-value=0.22  Score=58.30  Aligned_cols=14  Identities=14%  Similarity=0.401  Sum_probs=8.1

Q ss_pred             cCCccccccCCCCc
Q psy17252        586 FTKCTPICLTECTP  599 (1076)
Q Consensus       586 ~~~C~~sC~~~C~~  599 (1076)
                      ++.|-+.|.+|+-.
T Consensus       280 ~g~Cv~~Cp~G~y~  293 (501)
T 1mox_A          280 HGSCVRACGADSYE  293 (501)
T ss_dssp             TSBEESSCCSSCCC
T ss_pred             CCEEeccCCCCCee
Confidence            44566666666543
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Back     alignment and structure
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A* Back     alignment and structure
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Back     alignment and structure
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00