Psyllid ID: psy17274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEcccEEEEEEccHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEEEccccccEEEEEcccHHHHHHHHHHHccccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccEEEEEEEEcccccEEEEcccHHHHHHHHHHHccccEcccEEEEEEEcccccccccccccccccccccccccccccccccHHHcccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEEEcccccccEEEEcccHHHHHHHHHHHcccccccccEEEEEEcccEEEEEccc
Coil and Loop (DISEMBL)
mfsltgvygdVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHqavqlpkegqpdagltkdytasplhrfkkpgsknfqniyppsptlhlsnipasvtEDELKEAFtekgftvkgfkffpkdRKMALLQLDSIEEAITALIQMHNhqlseqshlrvsfsksniqdirdn
Flexible Loop (DISEMBL)
mfsltgvygdvLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQavqlpkegqpdAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKgftvkgfkffpKDRKMALLQLDSIEEAITALIQMHNHQlseqshlrvsfsksniqdirdn
Low Complexity Region (SEG)
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN
Disordered region (IsUnstruct)
***LTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI*************************************************************LKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH*************************
Disordered Region (DISOPRED)
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ*************************************YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF****KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF***********
Disordered Region (DISEMBL)
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN
Disordered Region (DISPRO)
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKE***DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q8BHD7	523	Polypyrimidine tract-bind	yes	N/A	0.967	0.340	0.696	2e-69
Q9Z118	523	Polypyrimidine tract-bind	yes	N/A	0.967	0.340	0.691	4e-69
O95758	552	Polypyrimidine tract-bind	yes	N/A	0.918	0.306	0.691	7e-69
Q00438	555	Polypyrimidine tract-bind	no	N/A	0.967	0.320	0.674	1e-68
Q8WN55	531	Polypyrimidine tract-bind	yes	N/A	0.967	0.335	0.674	1e-67
P26599	531	Polypyrimidine tract-bind	no	N/A	0.967	0.335	0.674	2e-67
Q29099	557	Polypyrimidine tract-bind	no	N/A	0.967	0.319	0.668	6e-66
Q66H20	531	Polypyrimidine tract-bind	no	N/A	0.961	0.333	0.668	3e-65
Q91Z31	531	Polypyrimidine tract-bind	no	N/A	0.961	0.333	0.668	3e-65
Q9UKA9	531	Polypyrimidine tract-bind	no	N/A	0.961	0.333	0.668	3e-65

>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3 PE=2 SV=1

 Score =  261 bits (666), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 147/178 (82%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKI++NKK++AL+QMA++ QA LAM H+   R++GK +R  +SKHQA
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQA 405

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).
Mus musculus (taxid: 10090)

>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus GN=Ptbp3 PE=2 SV=1

 Score =  260 bits (665), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/178 (69%), Positives = 147/178 (82%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKI++NKK++AL+QMA++ QA +AM H+   R++GK +R  +SKHQA
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQA 405

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Rattus norvegicus (taxid: 10116)

>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3 PE=1 SV=2

 Score =  259 bits (662), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 123/178 (69%), Positives = 147/178 (82%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+   R++GK +R  +SKHQA
Sbjct: 375 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 434

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct: 435 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 494

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F E G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct: 495 FIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 552

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes FAS exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Homo sapiens (taxid: 9606)

>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 147/178 (82%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL++MA+  QA LAM H++  ++ GK +R+ +SKHQ+
Sbjct: 378 LFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 437

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY +SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+ED+LK  
Sbjct: 438 VQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 497

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI++HNH L E  HLRVSFSKS I
Sbjct: 498 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 555

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Rattus norvegicus (taxid: 10116)

>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 145/178 (81%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVK+L+NKK++AL+QMA+  QA LAM H++  ++ GK +R+ +SKHQ+
Sbjct: 354 LFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQS 413

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP S++ED+LK  
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKIL 473

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEAI ALI +HNH L E  HLRVSFSKS I
Sbjct: 474 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 531

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Bos taurus (taxid: 9913)

>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1

 Score =  254 bits (649), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 145/178 (81%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 354 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK  
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 473

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 474 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Homo sapiens (taxid: 9606)

>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1

 Score =  249 bits (637), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 143/178 (80%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVY DV RVKIL+NKK++AL+QMA+  QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 380 LFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQN 439

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP S++E++LK  
Sbjct: 440 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKIL 499

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEAI ALI +HNH L E  HLRVSFSKS I
Sbjct: 500 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 557

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Sus scrofa (taxid: 9823)

>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++  +++GK +RV +SKHQ 
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EG  D GLTKD+  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+  
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F   G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E  HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Rattus norvegicus (taxid: 10116)

>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++  +++GK +RV +SKHQ 
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EG  D GLTKD+  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+  
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F   G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E  HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Mus musculus (taxid: 10090)

>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1

 Score =  247 bits (630), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++  +++GK +RV +SKHQ 
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EG  D GLTKD+  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+  
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F   G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E  HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation. Isoform 5 has a reduced affinity for RNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
357623431	621	putative polypyrimidine tract binding pr	0.967	0.286	0.820	2e-84
340726548	578	PREDICTED: polypyrimidine tract-binding	0.967	0.307	0.808	2e-83
350418407	578	PREDICTED: polypyrimidine tract-binding	0.967	0.307	0.808	2e-83
380018871	578	PREDICTED: polypyrimidine tract-binding	0.967	0.307	0.803	5e-83
345496639	587	PREDICTED: polypyrimidine tract-binding	0.967	0.303	0.803	8e-83
189241313	822	PREDICTED: similar to polypyrimidine tra	0.967	0.216	0.786	1e-81
270013160	876	hypothetical protein TcasGA2_TC011728 [T	0.967	0.203	0.786	2e-81
195110769	834	GI22798 [Drosophila mojavensis] gi|19391	0.967	0.213	0.797	2e-81
195055925	920	GH17472 [Drosophila grimshawi] gi|193892	0.967	0.193	0.797	2e-81
157137151	539	polypyrimidine tract binding protein [Ae	0.967	0.330	0.797	3e-81

>gi|357623431|gb|EHJ74585.1| putative polypyrimidine tract binding protein [Danaus plexippus]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE HQAHLAM HMDKLRVFGK MRVM+SKHQ 
Sbjct: 444 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLAMTHMDKLRVFGKAMRVMLSKHQT 503

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLT+DY+ SPLHRFKKPGSKN+QNIYPPS TLHLSNIPA+VTED++KEA
Sbjct: 504 VQLPKEGQPDAGLTRDYSQSPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVTEDDIKEA 563

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT++GFT+K FKFFPKDRKMAL+QL  I++A+ ALI+MHNHQLSE +HLRVSFSKS+I
Sbjct: 564 FTKRGFTIKAFKFFPKDRKMALVQLPCIDDAVAALIKMHNHQLSESNHLRVSFSKSSI 621

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726548|ref|XP_003401618.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus terrestris]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE HQAHLA+ HMDKLRVFGKQ++VM+SKHQ 
Sbjct: 401 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLALTHMDKLRVFGKQIKVMLSKHQT 460

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLTKDYT SPLHRFKKPGSKN+QNIYPPS TLHLSNIP +VTEDE+++A
Sbjct: 461 VQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTVTEDEIRDA 520

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKDRKMAL+Q+ S+++A+ ALI+MHN+QLSE +HLRVSFSKSNI
Sbjct: 521 FTKNGFTVKAFKFFPKDRKMALIQMPSMDDAVAALIKMHNYQLSESNHLRVSFSKSNI 578

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418407|ref|XP_003491847.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus impatiens]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE HQAHLA+ HMDKLRVFGKQ++VM+SKHQ 
Sbjct: 401 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLALTHMDKLRVFGKQIKVMLSKHQT 460

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLTKDYT SPLHRFKKPGSKN+QNIYPPS TLHLSNIP +VTEDE+++A
Sbjct: 461 VQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTVTEDEIRDA 520

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKDRKMAL+Q+ S+++A+ ALI+MHN+QLSE +HLRVSFSKSNI
Sbjct: 521 FTKNGFTVKAFKFFPKDRKMALIQMPSMDDAVAALIKMHNYQLSESNHLRVSFSKSNI 578

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018871|ref|XP_003693343.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Apis florea]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE HQAHLA+ HMDKLRVFGKQ++VM+SKHQ 
Sbjct: 401 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLALTHMDKLRVFGKQIKVMLSKHQT 460

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLTKDYT SPLHRFKKPGSKN+QNIYPPS TLHLSNIP +VTE+E+++A
Sbjct: 461 VQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTVTEEEIRDA 520

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKDRKMAL+Q+ S+++A+ ALI+MHN+QLSE +HLRVSFSKSNI
Sbjct: 521 FTKNGFTVKAFKFFPKDRKMALIQMPSMDDAVAALIKMHNYQLSESNHLRVSFSKSNI 578

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia vitripennis]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 166/178 (93%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQ+AE HQAHLAM HMDKL+VFGK +RVM+SKHQ 
Sbjct: 410 LFTLFGVYGDVQRVKILYNKKDSALIQLAEPHQAHLAMTHMDKLKVFGKPIRVMLSKHQT 469

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQPDAGLTKDYT SPLHRFKKPGSKN+QNIYPPS TLHLSNIPA+V+E+E+KEA
Sbjct: 470 VQLPREGQPDAGLTKDYTNSPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVSEEEIKEA 529

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKDRKMAL+Q+ S+++A++ALI+MHN+QLSE +HLRVSFSKSNI
Sbjct: 530 FTKNGFTVKAFKFFPKDRKMALIQMPSMDDAVSALIKMHNYQLSESNHLRVSFSKSNI 587

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241313|ref|XP_966484.2| PREDICTED: similar to polypyrimidine tract binding protein [Tribolium castaneum]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSAL+Q+AE HQAHLA+ HMDKL+VFGK +RVM+SKHQ+
Sbjct: 645 LFTLFGVYGDVQRVKILYNKKDSALVQLAEPHQAHLAITHMDKLKVFGKTIRVMLSKHQS 704

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQ+PKEGQPDAGLTKDY+ SPLHRFKKPGSKN+QNIYPPS TLHLSNIPA++ ED++KEA
Sbjct: 705 VQMPKEGQPDAGLTKDYSQSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPATINEDDIKEA 764

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKD+KMAL+QL S+EEA+ ALI+MHN+QLSE +HLRVSFSKS+I
Sbjct: 765 FTKNGFTVKAFKFFPKDKKMALIQLPSMEEAVEALIRMHNYQLSESNHLRVSFSKSSI 822

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013160|gb|EFA09608.1| hypothetical protein TcasGA2_TC011728 [Tribolium castaneum]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 165/178 (92%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSAL+Q+AE HQAHLA+ HMDKL+VFGK +RVM+SKHQ+
Sbjct: 699 LFTLFGVYGDVQRVKILYNKKDSALVQLAEPHQAHLAITHMDKLKVFGKTIRVMLSKHQS 758

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQ+PKEGQPDAGLTKDY+ SPLHRFKKPGSKN+QNIYPPS TLHLSNIPA++ ED++KEA
Sbjct: 759 VQMPKEGQPDAGLTKDYSQSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPATINEDDIKEA 818

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GFTVK FKFFPKD+KMAL+QL S+EEA+ ALI+MHN+QLSE +HLRVSFSKS+I
Sbjct: 819 FTKNGFTVKAFKFFPKDKKMALIQLPSMEEAVEALIRMHNYQLSESNHLRVSFSKSSI 876

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110769|ref|XP_001999952.1| GI22798 [Drosophila mojavensis] gi|193916546|gb|EDW15413.1| GI22798 [Drosophila mojavensis]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 160/178 (89%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE  QA+LAM H+DKLR++GK +RVM SKHQA
Sbjct: 657 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQA 716

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLT+DY+ +PLHRFKKPGSKN+QNIYPPS TLHLSNIP+S TED++KEA
Sbjct: 717 VQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCTEDDIKEA 776

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT   F VK FKFFPKDRKMALLQL S+EEA+ ALI+MHNHQLSE +HLRVSFSKSNI
Sbjct: 777 FTSNNFEVKAFKFFPKDRKMALLQLSSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 834

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055925|ref|XP_001994863.1| GH17472 [Drosophila grimshawi] gi|193892626|gb|EDV91492.1| GH17472 [Drosophila grimshawi]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 160/178 (89%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE  QA+LAM H+DKLR++GK +RVM SKHQA
Sbjct: 743 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQA 802

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLT+DY+ +PLHRFKKPGSKN+QNIYPPS TLHLSNIP+S TED++KEA
Sbjct: 803 VQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCTEDDIKEA 862

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT   F VK FKFFPKDRKMALLQL S+EEA+ ALI+MHNHQLSE +HLRVSFSKSNI
Sbjct: 863 FTSNNFEVKAFKFFPKDRKMALLQLSSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 920

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137151|ref|XP_001663911.1| polypyrimidine tract binding protein [Aedes aegypti] gi|108869791|gb|EAT34016.1| AAEL013723-PA [Aedes aegypti]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 161/178 (90%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMAE HQA+LAM H+DKLR++ K +RVM SKHQA
Sbjct: 362 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAYLAMTHLDKLRIWNKTIRVMASKHQA 421

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLPKEGQPDAGLT+DY  +PLHRFKKPGSKN+QNIYPPS TLHLSNIPA+VTE+E+KEA
Sbjct: 422 VQLPKEGQPDAGLTRDYAQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVTEEEIKEA 481

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           FT+ GF VK FKFFPKD KMAL+QL SIEEA+ ALI+MHN+QLSE +HLRVSFSKSNI
Sbjct: 482 FTKNGFEVKAFKFFPKDHKMALIQLSSIEEAVCALIKMHNYQLSESNHLRVSFSKSNI 539

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
FB|FBgn0011224	789	heph "hephaestus" [Drosophila	0.967	0.225	0.792	2.2e-73
UNIPROTKB|F1MPG6	523	F1MPG6 "Uncharacterized protei	0.967	0.340	0.696	7.6e-64
UNIPROTKB|F1PXP9	521	PTBP3 "Uncharacterized protein	0.967	0.341	0.696	7.6e-64
UNIPROTKB|Q06A95	523	ROD1 "ROD1" [Sus scrofa (taxid	0.967	0.340	0.696	7.6e-64
ZFIN|ZDB-GENE-091116-1	522	ptbp3 "polypyrimidine tract bi	0.967	0.340	0.702	7.6e-64
MGI|MGI:1923334	523	Ptbp3 "polypyrimidine tract bi	0.967	0.340	0.696	1.2e-63
RGD|621671	523	Ptbp3 "polypyrimidine tract bi	0.967	0.340	0.691	2e-63
UNIPROTKB|F1LM18	554	Ptbp1 "Polypyrimidine tract-bi	0.967	0.321	0.679	2.6e-63
UNIPROTKB|Q6P736	556	Ptbp1 "Polypyrimidine tract bi	0.967	0.320	0.679	2.6e-63
UNIPROTKB|O95758	552	PTBP3 "Polypyrimidine tract-bi	0.967	0.322	0.691	3.3e-63

FB|FBgn0011224 heph "hephaestus" [Drosophila melanogaster (taxid:7227)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 141/178 (79%), Positives = 160/178 (89%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F+L GVYGDV RVKILYNKKDSALIQMAE  QA+LAM H+DKLR++GK +RVM SKHQA
Sbjct:   612 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQA 671

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLPKEGQPDAGLT+DY+ +PLHRFKKPGSKN+QNIYPPS TLHLSNIP+S +ED++KEA
Sbjct:   672 VQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEA 731

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FT   F VK FKFFPKDRKMALLQL S+EEA+ ALI+MHNHQLSE +HLRVSFSKSNI
Sbjct:   732 FTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 789

GO:0007286 "spermatid development" evidence=IMP

GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS

GO:0003729 "mRNA binding" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007319 "negative regulation of oskar mRNA translation" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

UNIPROTKB|F1MPG6 F1MPG6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 124/178 (69%), Positives = 148/178 (83%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+   R++GK +R  +SKHQA
Sbjct:   346 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 405

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 465

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PXP9 PTBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 124/178 (69%), Positives = 148/178 (83%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+   R++GK +R  +SKHQA
Sbjct:   344 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 403

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   404 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 463

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   464 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 521

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q06A95 ROD1 "ROD1" [Sus scrofa (taxid:9823)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 124/178 (69%), Positives = 148/178 (83%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+   R++GK +R  +SKHQA
Sbjct:   346 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 405

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 465

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-091116-1 ptbp3 "polypyrimidine tract binding protein 3" [Danio rerio (taxid:7955)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 125/178 (70%), Positives = 146/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKIL+NKK++ALIQMA++ QA LAM H++  R++GK +RV ISKHQ 
Sbjct:   345 LFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIRVTISKHQT 404

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP S T+D LK+ 
Sbjct:   405 VQLPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDL 464

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             F   G+TVK FKFF KDRKMAL+QL S+EEAI ALI +HNH L E  HLRVSFSKS I
Sbjct:   465 FASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSKSTI 522

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923334 Ptbp3 "polypyrimidine tract binding protein 3" [Mus musculus (taxid:10090)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 124/178 (69%), Positives = 147/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA++ QA LAM H+   R++GK +R  +SKHQA
Sbjct:   346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQA 405

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=ISO

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=ISO

RGD|621671 Ptbp3 "polypyrimidine tract binding protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 123/178 (69%), Positives = 147/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA++ QA +AM H+   R++GK +R  +SKHQA
Sbjct:   346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQA 405

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IEA;ISO

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IMP

UNIPROTKB|F1LM18 Ptbp1 "Polypyrimidine tract-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 121/178 (67%), Positives = 147/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKIL+NKK++AL+QMA+  QA LAM H++  ++ GK +R+ +SKHQ+
Sbjct:   377 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 436

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKDY +SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+ED+LK  
Sbjct:   437 VQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 496

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI++HNH L E  HLRVSFSKS I
Sbjct:   497 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 554

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q6P736 Ptbp1 "Polypyrimidine tract binding protein 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 121/178 (67%), Positives = 147/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKIL+NKK++AL+QMA+  QA LAM H++  ++ GK +R+ +SKHQ+
Sbjct:   379 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 438

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKDY +SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+ED+LK  
Sbjct:   439 VQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 498

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI++HNH L E  HLRVSFSKS I
Sbjct:   499 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 556

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O95758 PTBP3 "Polypyrimidine tract-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 123/178 (69%), Positives = 147/178 (82%)

Query:     1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
             +F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+   R++GK +R  +SKHQA
Sbjct:   375 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 434

Query:    61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
             VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK  
Sbjct:   435 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 494

Query:   121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
             F E G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E  HLRVSFSKS I
Sbjct:   495 FIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WN55	PTBP1_BOVIN	No assigned EC number	0.6741	0.9673	0.3352	yes	N/A
Q8BHD7	PTBP3_MOUSE	No assigned EC number	0.6966	0.9673	0.3403	yes	N/A
Q9Z118	PTBP3_RAT	No assigned EC number	0.6910	0.9673	0.3403	yes	N/A
O95758	PTBP3_HUMAN	No assigned EC number	0.6910	0.9184	0.3061	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	3e-85
cd12425	76	cd12425, RRM4_PTBP1_like, RNA recognition motif 4	2e-43
cd12703	81	cd12703, RRM4_ROD1, RNA recognition motif 4 in ver	3e-35
cd12696	107	cd12696, RRM3_PTBP2, RNA recognition motif 3 in ve	2e-30
cd12701	76	cd12701, RRM4_PTBP1, RNA recognition motif 4 in ve	7e-30
cd12695	93	cd12695, RRM3_PTBP1, RNA recognition motif 3 in ve	1e-29
cd12423	74	cd12423, RRM3_PTBP1_like, RNA recognition motif 3	2e-29
cd12702	80	cd12702, RRM4_PTBP2, RNA recognition motif 4 in ve	2e-29
cd12697	76	cd12697, RRM3_ROD1, RNA recognition motif 3 in ver	1e-19
cd12698	76	cd12698, RRM3_PTBPH3, RNA recognition motif 3 in p	2e-13
cd12424	71	cd12424, RRM3_hnRNPL_like, RNA recognition motif 1	2e-12
cd12426	79	cd12426, RRM4_PTBPH3, RNA recognition motif 4 in p	4e-11
smart00360	73	smart00360, RRM, RNA recognition motif	2e-07
cd12427	84	cd12427, RRM4_hnRNPL_like, RNA recognition motif 4	2e-07
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	3e-07
cd12354	73	cd12354, RRM3_TIA1_like, RNA recognition motif 2 i	5e-07
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	5e-07
cd12245	79	cd12245, RRM_scw1_like, RNA recognition motif in y	2e-06
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	6e-06
cd12700	71	cd12700, RRM3_hnRPLL, RNA recognition motif 3 in v	6e-06
cd12699	74	cd12699, RRM3_hnRNPL, RNA recognition motif 3 in v	9e-06
cd12310	72	cd12310, RRM3_Spen, RNA recognition motif 3 in the	1e-05
cd12225	77	cd12225, RRM1_2_CID8_like, RNA recognition motif 1	2e-05
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	6e-05
cd12689	80	cd12689, RRM1_hnRNPL_like, RNA recognition motif 1	1e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-04
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-04
cd12705	85	cd12705, RRM4_hnRPLL, RNA recognition motif 4 in v	3e-04
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	5e-04
cd12251	72	cd12251, RRM3_hnRNPR_like, RNA recognition motif 3	5e-04
cd12522	79	cd12522, RRM4_MRN1, RNA recognition motif 4 of RNA	7e-04
smart00360	73	smart00360, RRM, RNA recognition motif	0.001
cd12317	72	cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition mot	0.003
cd12351	77	cd12351, RRM4_SHARP, RNA recognition motif 4 in SM	0.003
cd12299	71	cd12299, RRM4_Prp24, RNA recognition motif 4 in fu	0.004
cd12247	72	cd12247, RRM2_U1A_like, RNA recognition motif 2 in	0.004

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score =  258 bits (661), Expect = 3e-85
 Identities = 106/189 (56%), Positives = 138/189 (73%), Gaps = 11/189 (5%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L  VYG+V RVK + NKK++ALI+MA+ +QA LA+ H++ +++FGK +RV  SK Q 
Sbjct: 293 LFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352

Query: 61  VQLPKEGQPDAGLT--KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
           VQ P+EGQ D GLT  KDY++S  HRFKKPGS N  NI PPS TLHLSNIP SV+E++LK
Sbjct: 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLK 412

Query: 119 EAFTEKGFT-VKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSE-----QSHL 169
           E F E G   VK FKFFPKD    KM LL+ +S+E+A+ ALI +++HQL+E       HL
Sbjct: 413 ELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHL 472

Query: 170 RVSFSKSNI 178
           +VSFS S I
Sbjct: 473 KVSFSTSRI 481

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|240871 cd12425, RRM4_PTBP1_like, RNA recognition motif 4 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score =  138 bits (351), Expect = 2e-43
 Identities = 58/76 (76%), Positives = 66/76 (86%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
           TLHLSNIP SVTE++LKE FT+ G TVK FKFFPKDRKMAL+Q+ S+EEAI ALI +HN+
Sbjct: 1   TLHLSNIPPSVTEEDLKELFTQTGGTVKAFKFFPKDRKMALIQMGSVEEAIEALIALHNY 60

Query: 162 QLSEQSHLRVSFSKSN 177
           QLSE SHLRVSFSKS 
Sbjct: 61  QLSESSHLRVSFSKST 76

This subfamily corresponds to the RRM4 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|241147 cd12703, RRM4_ROD1, RNA recognition motif 4 in vertebrate regulator of differentiation 1 (Rod1)

 Score =  118 bits (297), Expect = 3e-35
 Identities = 58/81 (71%), Positives = 64/81 (79%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           PPS TLHLSNIP SVTED+LK  F   G +VK FKFF KDRKMAL+QL S+EEAI ALI+
Sbjct: 1   PPSATLHLSNIPPSVTEDDLKGLFLSSGCSVKAFKFFQKDRKMALIQLGSVEEAIEALIE 60

Query: 158 MHNHQLSEQSHLRVSFSKSNI 178
           +HNH L E  HLRVSFSKS I
Sbjct: 61  LHNHDLGENHHLRVSFSKSTI 81

This subgroup corresponds to the RRM4 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein that negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 81

>gnl|CDD|241140 cd12696, RRM3_PTBP2, RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score =  107 bits (267), Expect = 2e-30
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++  +++GK +RV +SKHQ 
Sbjct: 31  LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRVTLSKHQT 90

Query: 61  VQLPKEGQPDAGLTKDY 77
           VQLP+EG  D GLTKD+
Sbjct: 91  VQLPREGLDDQGLTKDF 107

This subgroup corresponds to the RRM3 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 107

>gnl|CDD|241145 cd12701, RRM4_PTBP1, RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score =  104 bits (260), Expect = 7e-30
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
           TLHLSNIP SV+E++LK  F+  G TVKGFKFF KDRKMAL+Q+ S+EEAI +LI +HNH
Sbjct: 1   TLHLSNIPPSVSEEDLKMLFSSNGGTVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNH 60

Query: 162 QLSEQSHLRVSFSKS 176
            L E  HLRVSFSKS
Sbjct: 61  DLGENHHLRVSFSKS 75

This subgroup corresponds to the RRM4 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 76

>gnl|CDD|241139 cd12695, RRM3_PTBP1, RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score =  104 bits (261), Expect = 1e-29
 Identities = 48/77 (62%), Positives = 63/77 (81%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
          +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 17 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQKLHGKPLRITLSKHQT 76

Query: 61 VQLPKEGQPDAGLTKDY 77
          VQLP+EGQ D GLTKDY
Sbjct: 77 VQLPREGQEDQGLTKDY 93

This subgroup corresponds to the RRM3 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence show that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 93

>gnl|CDD|240869 cd12423, RRM3_PTBP1_like, RNA recognition motif 3 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score =  103 bits (259), Expect = 2e-29
 Identities = 35/58 (60%), Positives = 49/58 (84%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
          +F+L GVYGDV+RVKIL+NKKD+ALIQMA+  QA  A+ H++ +R+ GK++RV +SKH
Sbjct: 17 LFTLFGVYGDVVRVKILFNKKDTALIQMADPQQAQTALTHLNGIRLHGKKLRVTLSKH 74

This subfamily corresponds to the RRM3 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 74

>gnl|CDD|241146 cd12702, RRM4_PTBP2, RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score =  103 bits (258), Expect = 2e-29
 Identities = 53/81 (65%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           PPS TLHLSNIP SVTE++L+  F   G TVK FKFF +D KMALLQ+ ++EEAI ALI 
Sbjct: 1   PPSATLHLSNIPQSVTEEDLRTLFANTGGTVKAFKFF-QDHKMALLQMSTVEEAIQALID 59

Query: 158 MHNHQLSEQSHLRVSFSKSNI 178
           +HN+ L E  HLRVSFSKS I
Sbjct: 60  LHNYNLGENHHLRVSFSKSTI 80

This subgroup corresponds to the RRM4 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80

>gnl|CDD|241141 cd12697, RRM3_ROD1, RNA recognition motif 3 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 78.1 bits (192), Expect = 1e-19
 Identities = 34/59 (57%), Positives = 48/59 (81%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59
          +F L GVYGDV RVKI++NKK++AL+QMA++ QA LAM H++  R++GK +R  +SKHQ
Sbjct: 18 LFILFGVYGDVHRVKIMFNKKENALVQMADATQAQLAMSHLNGQRLYGKVIRATLSKHQ 76

This subgroup corresponds to the RRM3 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 76

>gnl|CDD|241142 cd12698, RRM3_PTBPH3, RNA recognition motif 3 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
          +F+L   YG+++R+K+L+NK D ALIQM +  QA LA+ ++    +FGK+M V  SKH
Sbjct: 19 LFNLFSNYGNIVRIKLLHNKPDHALIQMGDGFQAELAVNYLKGAMLFGKRMEVNFSKH 76

This subgroup corresponds to the RRM3 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|240870 cd12424, RRM3_hnRNPL_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 18/52 (34%), Positives = 36/52 (69%)

Query: 2  FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53
          F+L  +YG+VLR+K L +K  +A++QM +   A  A+ +++ + +FG+++ V
Sbjct: 18 FNLFCLYGNVLRIKFLKSKPGTAMVQMGDPQAAERAIEYLNGVVLFGQKLEV 69

This subfamily corresponds to the RRM3 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RRMs. Length = 71

>gnl|CDD|240872 cd12426, RRM4_PTBPH3, RNA recognition motif 4 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           PP+  +H+SN+P+ VTE+++     E G  V    F    +K AL++  + E+A  AL  
Sbjct: 5   PPTKMIHVSNLPSDVTEEDVINHLAEHGVIVNVKVFESNGKKQALVEFATEEQATEALAC 64

Query: 158 MHNHQLSEQSHLRVSF 173
            H   L   S +R++F
Sbjct: 65  KHASSL-NGSTIRLAF 79

This subfamily corresponds to the RRM4 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 79

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALI 156
           TL + N+P   TE+EL+E F++ G  V+  +        K +  A ++ +S E+A  AL 
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFG-KVESVRLVRDKETGKSKGFAFVEFESEEDAEKALE 59

Query: 157 QMHNHQLSEQSHLRV 171
            ++  +L +   L+V
Sbjct: 60  ALNGKEL-DGRPLKV 73

Length = 73

>gnl|CDD|240873 cd12427, RRM4_hnRNPL_like, RNA recognition motif 4 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTV-KGFKFFPK--DRKMA-LLQLDSIEEAITA 154
           PS  LH  N P + TE++L+E F EKG       K FPK  +R  + L++ +++ EA+ A
Sbjct: 1   PSKVLHFFNAPPTFTEEDLRELFAEKGAPPPSKIKIFPKKSERSSSGLIEFETVAEAVEA 60

Query: 155 LIQMHNHQ 162
           L  + NH 
Sbjct: 61  LA-LCNHT 67

This subfamily corresponds to the RRM4 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 84

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP---KDRKMALLQLDSIEEAITALIQMH 159
           L++ N+P SVTE++L+E F      V+G +      + R  A ++  S E+A  AL +++
Sbjct: 1   LYVRNLPPSVTEEDLREFF-SPYGKVEGVRLVRNKDRPRGFAFVEFASPEDAEAALKKLN 59

Query: 160 NHQL 163
              L
Sbjct: 60  GLVL 63

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240800 cd12354, RRM3_TIA1_like, RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

 Score = 44.9 bits (107), Expect = 5e-07
 Identities = 21/74 (28%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
           T+++ N+P  +TE+EL+  F+  G  ++  + F KD+  A ++ D+ E A TA++ ++  
Sbjct: 2   TVYVGNLPHGLTEEELQRTFSPFGA-IEEVRVF-KDKGYAFVRFDTHEAAATAIVAVNGT 59

Query: 162 QLSEQSHLRVSFSK 175
            ++ Q+ ++ S+ K
Sbjct: 60  SINGQT-VKCSWGK 72

This subfamily corresponds to the RRM3 of TIA-1, TIAR, and PUB1. Nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR) are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. They share high sequence similarity and are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both TIA-1 and TIAR bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. This subfamily also includes a yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein, which has been identified as both a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP). It may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. PUB1 is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RRMs, and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 73

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQM 158
           L + N+P   TE++L+E F++ G  ++  +       K +  A ++ +S E+A  AL  +
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFG-EIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEAL 59

Query: 159 HNHQL 163
           +  +L
Sbjct: 60  NGKEL 64

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240691 cd12245, RRM_scw1_like, RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 99  PSPTLHLSNIPASVTEDELKEAF-TEKGFTVKGFKFFPKDRK-MALLQLDSIEEAITALI 156
           P  TL ++N+  + TE+EL++ F  + GF  +  K   K    +  ++ + +  A  AL 
Sbjct: 1   PCNTLFVANLGPNTTEEELRQLFSRQPGF--RRLKMHNKGGGPVCFVEFEDVSFATQALN 58

Query: 157 QMHNHQL--SEQSHLRVSFSK 175
            +    L  S++  +R+ ++K
Sbjct: 59  SLQGAVLSSSDRGGIRIEYAK 79

This subfamily corresponds to the RRM of the family including yeast cell wall integrity protein scw1, yeast Whi3 protein, yeast Whi4 protein and similar proteins. The strong cell wall protein 1, scw1, is a nonessential cytoplasmic RNA-binding protein that regulates septation and cell-wall structure in fission yeast. It may function as an inhibitor of septum formation, such that its loss of function allows weak SIN signaling to promote septum formation. It's RRM domain shows high homology to two budding yeast proteins, Whi3 and Whi4. Whi3 is a dose-dependent modulator of cell size and has been implicated in cell cycle control in the yeast Saccharomyces cerevisiae. It functions as a negative regulator of ceroid-lipofuscinosis, neuronal 3 (Cln3), a G1 cyclin that promotes transcription of many genes to trigger the G1/S transition in budding yeast. It specifically binds the CLN3 mRNA and localizes it into discrete cytoplasmic loci that may locally restrict Cln3 synthesis to modulate cell cycle progression. Moreover, Whi3 plays a key role in cell fate determination in budding yeast. The RRM domain is essential for Whi3 function. Whi4 is a partially redundant homolog of Whi3, also containing one RRM. Some uncharacterized family members of this subfamily contain two RRMs; their RRM1 shows high sequence homology to the RRM of RNA-binding protein with multiple splicing (RBP-MS)-like proteins. Length = 79

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 2  FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56
          + L   +G+V ++K+L  K   A ++ +    A  A+ +++ +   G+ +RV  S
Sbjct: 2  YKLFSPFGNVEKIKLLKKKPGFAFVEFSTEEAAEKAVQYLNGVLFGGRPLRVDYS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|241144 cd12700, RRM3_hnRPLL, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL)

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 15/55 (27%), Positives = 36/55 (65%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55
          +F+L  +YG++ +VK +     +AL++M + +    A+ H++ +++FGK++ V +
Sbjct: 17 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCV 71

The subgroup corresponds to the RRM3 of hnRNP-LL which plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to heterogeneous nuclear ribonucleoprotein L (hnRNP-L), which is an abundant nuclear, multifunctional RNA-binding protein with three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 71

>gnl|CDD|241143 cd12699, RRM3_hnRNPL, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 17/58 (29%), Positives = 39/58 (67%)

Query: 1  MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
          +F++  +YG+V +VK + +K  +A+++MA+ +    A+ H++   +FG+++ V +SK 
Sbjct: 17 VFNIFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQ 74

This subgroup corresponds to the RRM3 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology with polypyrimidine tract-binding protein (PTB or hnRNP I). Both, hnRNP-L and PTB, are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 74

>gnl|CDD|240756 cd12310, RRM3_Spen, RNA recognition motif 3 in the Spen (split end) protein family

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
           L +  +    +  EL+  F   G  ++   +    R  A ++ +SIE A  A   +    
Sbjct: 1   LWVGGLGPWTSLAELEREFDRFGA-IRRIDY-DPGRNYAYIEYESIEAAQAAKEALRGFP 58

Query: 163 LSEQ-SHLRVSFSK 175
           L      LRV F+ 
Sbjct: 59  LGGPGRRLRVDFAD 72

This subfamily corresponds to the RRM3 domain in the Spen (split end) protein family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B) and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and is a novel component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possess mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also termed one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 72

>gnl|CDD|240671 cd12225, RRM1_2_CID8_like, RNA recognition motif 1 and 2 (RRM1, RRM2) in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFK--FFPKDRKMALLQLDSIEEAITALIQMH 159
           T+H+  I  S++ED+LKE F+  G   +           + A ++    E A++AL    
Sbjct: 2   TIHVGGIDGSLSEDDLKEFFSNCGEVTRVRLCGDRQHSARFAFVEFADAESALSAL--NL 59

Query: 160 NHQLSEQSHLRVSFSKS 176
           +  L     LRVS SK+
Sbjct: 60  SGTLLGGHPLRVSPSKT 76

This subgroup corresponds to the RRM domains found in A. thaliana CID8, CID9, CID10, CID11, CID12, CID 13 and mainly their plant homologs. These highly related RNA-binding proteins contain an N-terminal PAM2 domain (PABP-interacting motif 2), two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a basic region that resembles a bipartite nuclear localization signal. The biological role of this family remains unclear. Length = 77

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMA 141
                K+ Q     + TL + N+P  VTE++L+E F +    K   +   +   K R  A
Sbjct: 101 SSESPKSRQKSKEENNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFA 160

Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQ 179
            ++ +S E A  A+ +++  +L E   LRV  ++   Q
Sbjct: 161 FVEFESEESAEKAIEELNGKEL-EGRPLRVQKAQPASQ 197

Length = 306

>gnl|CDD|241133 cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
           PSP +H+  +P  VTE +L EA +E G  +      PK ++ AL++ + I +A   +   
Sbjct: 1   PSPVVHVRGLPDGVTEADLVEALSEFG-PISYVTMMPK-KRQALVEFEDISDAKACVNHA 58

Query: 159 HNHQLSEQSHL-RVSFSKS 176
             + +         ++S S
Sbjct: 59  QQNPVYIAGRQAYFNYSTS 77

This subfamily corresponds to the RRM1 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 8  YGDVLRVKILYNK----KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53
          +G++  V+I+ +K    K  A ++      A  A+  ++   + G++++V
Sbjct: 22 FGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALNGKELDGRKLKV 71

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 105 LSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHN 160
           + N+P   TE++LK+ F++ G  ++  +    +    +  A ++ +  E+A  AL  ++ 
Sbjct: 3   VGNLPPDTTEEDLKDLFSKFG-PIESIRIVRDETGRSKGFAFVEFEDEEDAEKALEALNG 61

Query: 161 HQL 163
            +L
Sbjct: 62  KEL 64

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|241149 cd12705, RRM4_hnRPLL, RNA recognition motif 4 in vertebrate heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL)

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFF---PKDRKMA-LLQLDSIEEAIT 153
           PS  LH  N+P  VTE+  ++   +    T   FK F   P  + ++ LL+ +S  EA+ 
Sbjct: 1   PSCVLHYYNVPLCVTEETFQKLCEDHEVSTFIKFKVFDAKPSSKTLSGLLEWESKTEAVE 60

Query: 154 ALIQMHNHQL 163
           AL  ++++Q+
Sbjct: 61  ALTVLNHYQI 70

The subgroup corresponds to the RRM4 of hnRNP-LL which plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to heterogeneous nuclear ribonucleoprotein L (hnRNP-L), which is an abundant nuclear, multifunctional RNA-binding protein with three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 85

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 107 NIPASVTEDELKEAFTEKGFTVKGFKF-FPKD----RKMALLQLDSIEEAITALIQMHNH 161
           NIP   TE++L E F+E G  V  F+    +D    +     + + IE A +A+  ++ +
Sbjct: 5   NIPYDATEEQLIEIFSEVG-PVVSFRLVTDRDTGKPKGYGFCEFEDIETAASAIRNLNGY 63

Query: 162 QLSEQSHLRVSFS 174
           + + ++ LRV F+
Sbjct: 64  EFNGRA-LRVDFA 75

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

>gnl|CDD|240697 cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
           L++ N+P S TE++L+E F+E G   +  K   KD   A +  +  ++A+ A+ +M+  +
Sbjct: 4   LYVRNLPLSTTEEQLRELFSEYGEVERVKK--IKD--YAFVHFEERDDAVKAMEEMNGKE 59

Query: 163 LSEQSHLRVSFSK 175
           L E S + VS +K
Sbjct: 60  L-EGSPIEVSLAK 71

This subfamily corresponds to the RRM3 in hnRNP R, hnRNP Q, and APOBEC-1 complementation factor (ACF). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches and has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members contain three conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Length = 72

>gnl|CDD|240966 cd12522, RRM4_MRN1, RNA recognition motif 4 of RNA-binding protein MRN1 and similar proteins

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159
           S  +++ NI  S+TE++L+  F++ G  ++   +  + +  A +   +I  AI A+  + 
Sbjct: 3   SRNVYIGNIDDSLTEEKLRNDFSQYG-EIESVNYLRE-KNCAFVNFTNISNAIKAIDGVK 60

Query: 160 NHQLSEQSHLRVSFSK 175
           +H L ++   ++S+ K
Sbjct: 61  SHPLFKKF--KISYGK 74

This subgroup corresponds to the RRM4 of MRN1, also termed multicopy suppressor of RSC-NHP6 synthetic lethality protein 1, or post-transcriptional regulator of 69 kDa, which is a RNA-binding protein found in yeast. Although its specific biological role remains unclear, MRN1 might be involved in translational regulation. Members in this family contain four copies of conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 79

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 8  YGDVLRVKILYNK-----KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53
          +G V  V+++ +K     K  A ++      A  A+  ++   + G+ ++V
Sbjct: 23 FGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|240763 cd12317, RRM4_RBM19_RRM3_MRD1, RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple RNA-binding domain-containing protein 1 (MRD1)

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
            + + N+P   TE+EL+E F + G ++      P  R +AL++     +A  A   +
Sbjct: 2   VILVKNLPFGTTEEELRELFEKFG-SLGRL-LLPPSRTIALVEFLEPSDARKAFKSL 56

This subfamily corresponds to the RRM4 of RBM19 and the RRM3 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologues exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 72

>gnl|CDD|240797 cd12351, RRM4_SHARP, RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
           P+  + L  +  SVTE  L   F+  G  V       + R  AL+  D +E A  A+ +M
Sbjct: 6   PTNCVWLDGLDESVTEQYLTRHFSRYGPVVH--VVIDRQRGQALVFFDKVEAAQAAVNEM 63

Query: 159 HNHQLSEQSHLRVSF 173
              +L     L+V F
Sbjct: 64  KGRKLGG-RKLQVDF 77

This subfamily corresponds to the RRM of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, is an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 77

>gnl|CDD|240745 cd12299, RRM4_Prp24, RNA recognition motif 4 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
           T+ L N+  +V E+++K  F + G  V+  + FP D + AL++ +S  +A  A + ++  
Sbjct: 2   TIGLFNVSDTVNEEQIKAFFEKIGPDVRKIELFP-DHEGALVEFESPSDAGKASLSLNGS 60

Query: 162 QL 163
           Q 
Sbjct: 61  QF 62

This subfamily corresponds to the RRM4 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 71

>gnl|CDD|240693 cd12247, RRM2_U1A_like, RNA recognition motif 2 in the U1A/U2B"/SNF protein family

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           P+  L L N+P   T++ L+  F +  GF  K  +  P+ R +A ++ ++ E+A  AL  
Sbjct: 1   PNKILFLQNLPEETTKEMLEMLFNQFPGF--KEVRLVPR-RGIAFVEFETEEQATVALQA 57

Query: 158 MHNHQLSEQSHLRVS 172
           +   +++    +++S
Sbjct: 58  LQGFKITPGHAMKIS 72

This subfamily corresponds to the RRM2 of U1A/U2B"/SNF protein family, containing Drosophila sex determination protein SNF and its two mammalian counterparts, U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A) and U2 small nuclear ribonucleoprotein B" (U2 snRNP B" or U2B"), all of which consist of two RNA recognition motifs (RRMs) connected by a variable, flexible linker. SNF is an RNA-binding protein found in the U1 and U2 snRNPs of Drosophila where it is essential in sex determination and possesses a novel dual RNA binding specificity. SNF binds with high affinity to both Drosophila U1 snRNA stem-loop II (SLII) and U2 snRNA stem-loop IV (SLIV). It can also bind to poly(U) RNA tracts flanking the alternatively spliced Sex-lethal (Sxl) exon, as does Drosophila Sex-lethal protein (SXL). U1A is an RNA-binding protein associated with the U1 snRNP, a small RNA-protein complex involved in pre-mRNA splicing. U1A binds with high affinity and specificity to stem-loop II (SLII) of U1 snRNA. It is predominantly a nuclear protein that shuttles between the nucleus and the cytoplasm independently of interactions with U1 snRNA. Moreover, U1A may be involved in RNA 3'-end processing, specifically cleavage, splicing and polyadenylation, through interacting with a large number of non-snRNP proteins. U2B", initially identified to bind to stem-loop IV (SLIV) at the 3' end of U2 snRNA, is a unique protein that comprises of the U2 snRNP. Additional research indicates U2B" binds to U1 snRNA stem-loop II (SLII) as well and shows no preference for SLIV or SLII on the basis of binding affinity. U2B" does not require an auxiliary protein for binding to RNA and its nuclear transport is independent on U2 snRNA binding. . Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	100.0
KOG1190|consensus	492		100.0
KOG1456|consensus	494		100.0
KOG0148|consensus	321		100.0
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.98
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.97
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.97
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.97
KOG0117|consensus	506		99.96
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.96
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.95
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.95
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.94
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.94
KOG0145|consensus	360		99.94
KOG4206|consensus	221		99.93
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.93
KOG0109|consensus	346		99.93
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.92
KOG0131|consensus	203		99.92
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.92
KOG0145|consensus	360		99.91
KOG0144|consensus	510		99.91
KOG1190|consensus	492		99.91
KOG0123|consensus	369		99.9
KOG0127|consensus	678		99.89
KOG0127|consensus	678		99.88
KOG0110|consensus	725		99.87
KOG0124|consensus	544		99.86
KOG1456|consensus	494		99.86
KOG0147|consensus	549		99.82
KOG0123|consensus	369		99.82
KOG0105|consensus	241		99.81
KOG0146|consensus	371		99.79
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.79
KOG0144|consensus	510		99.78
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.78
KOG0147|consensus	549		99.76
KOG0110|consensus	725		99.75
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.74
KOG1457|consensus	284		99.72
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.72
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.68
KOG0148|consensus	321		99.68
KOG0106|consensus	216		99.67
KOG0125|consensus	376		99.67
KOG0114|consensus	124		99.67
KOG0107|consensus	195		99.66
PLN03120	260	nucleic acid binding protein; Provisional	99.65
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.64
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.63
KOG0122|consensus	270		99.61
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.6
KOG4212|consensus	608		99.59
smart00362	72	RRM_2 RNA recognition motif.	99.58
KOG0105|consensus	241		99.55
KOG1548|consensus	382		99.55
KOG0124|consensus	544		99.54
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.53
PLN03213	759	repressor of silencing 3; Provisional	99.53
KOG4205|consensus	311		99.53
PLN03121	243	nucleic acid binding protein; Provisional	99.52
KOG0121|consensus	153		99.52
smart00360	71	RRM RNA recognition motif.	99.49
KOG4207|consensus	256		99.48
KOG0113|consensus	335		99.46
KOG0111|consensus	298		99.46
KOG4206|consensus	221		99.44
KOG0120|consensus	500		99.44
KOG0109|consensus	346		99.42
KOG0131|consensus	203		99.41
KOG0107|consensus	195		99.4
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.4
KOG0130|consensus	170		99.4
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.38
KOG0117|consensus	506		99.38
KOG0132|consensus	894		99.34
KOG4211|consensus	510		99.32
KOG0108|consensus	435		99.32
smart00361	70	RRM_1 RNA recognition motif.	99.32
KOG0126|consensus	219		99.31
smart00361	70	RRM_1 RNA recognition motif.	99.29
KOG0125|consensus	376		99.28
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.27
KOG0149|consensus	247		99.27
KOG4212|consensus	608		99.26
KOG0153|consensus	377		99.26
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.21
KOG4207|consensus	256		99.21
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	99.21
KOG0415|consensus	479		99.19
KOG4661|consensus	940		99.17
KOG0111|consensus	298		99.17
KOG4660|consensus	549		99.16
PLN03120	260	nucleic acid binding protein; Provisional	99.14
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.13
KOG4208|consensus	214		99.12
KOG0130|consensus	170		99.12
KOG0122|consensus	270		99.11
KOG0114|consensus	124		99.09
smart00360	71	RRM RNA recognition motif.	99.09
KOG0121|consensus	153		99.08
smart00362	72	RRM_2 RNA recognition motif.	99.08
KOG0120|consensus	500		99.08
PLN03213	759	repressor of silencing 3; Provisional	99.02
PLN03121	243	nucleic acid binding protein; Provisional	98.98
KOG1457|consensus	284		98.97
KOG0126|consensus	219		98.97
KOG0151|consensus	877		98.94
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.93
KOG0533|consensus	243		98.92
KOG4660|consensus	549		98.91
KOG4208|consensus	214		98.9
KOG0113|consensus	335		98.89
KOG0146|consensus	371		98.84
KOG0112|consensus	975		98.8
KOG0226|consensus	290		98.8
KOG0108|consensus	435		98.75
KOG1365|consensus	508		98.67
KOG0106|consensus	216		98.66
KOG1548|consensus	382		98.63
KOG0149|consensus	247		98.63
KOG4210|consensus	285		98.62
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	98.59
KOG2193|consensus	584		98.53
KOG4209|consensus	231		98.51
KOG4454|consensus	267		98.46
KOG0116|consensus	419		98.43
KOG4661|consensus	940		98.4
KOG0153|consensus	377		98.4
KOG4454|consensus	267		98.38
KOG0132|consensus	894		98.36
KOG0128|consensus	881		98.34
KOG0129|consensus	520		98.34
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	98.25
KOG0415|consensus	479		98.24
KOG4211|consensus	510		98.24
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	98.23
KOG3152|consensus	278		98.23
COG5175	480	MOT2 Transcriptional repressor [Transcription]	98.2
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	98.16
KOG4307|consensus	944		98.14
KOG0115|consensus	275		98.12
KOG4205|consensus	311		98.11
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.05
KOG1365|consensus	508		98.0
KOG4307|consensus	944		97.96
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	97.87
KOG2202|consensus	260		97.85
KOG1995|consensus	351		97.84
KOG1996|consensus	378		97.79
KOG1855|consensus	484		97.73
KOG0151|consensus	877		97.68
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.67
KOG0533|consensus	243		97.62
KOG4209|consensus	231		97.61
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	97.6
KOG2202|consensus	260		97.59
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.57
KOG4676|consensus	479		97.56
KOG2416|consensus	718		97.44
KOG2314|consensus	698		97.42
KOG4676|consensus	479		97.38
KOG0116|consensus	419		97.31
KOG0128|consensus	881		97.25
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	97.2
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.19
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	97.16
KOG2314|consensus	698		97.15
KOG1996|consensus	378		97.14
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	97.0
KOG2193|consensus	584		96.95
KOG0226|consensus	290		96.91
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	96.85
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	96.84
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	96.82
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	96.7
KOG4574|consensus	1007		96.59
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	96.58
KOG4285|consensus	350		96.51
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	96.46
KOG0112|consensus	975		96.25
KOG4574|consensus	1007		96.22
KOG4285|consensus	350		96.1
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	96.01
KOG2068|consensus	327		96.01
KOG4849|consensus	498		95.94
KOG0129|consensus	520		95.93
KOG1995|consensus	351		95.84
KOG2135|consensus	526		95.83
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	95.8
KOG1855|consensus	484		95.42
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	95.13
PF07292	88	NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909	94.95
KOG0804|consensus	493		94.07
KOG4210|consensus	285		94.06
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	93.89
KOG2068|consensus	327		93.83
KOG2318|consensus	650		93.69
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	93.47
KOG3152|consensus	278		93.3
KOG2135|consensus	526		92.62
KOG2591|consensus	684		92.38
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	92.3
KOG2253|consensus	668		91.96
KOG4019|consensus	193		90.88
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	89.18
PRK10629	127	EnvZ/OmpR regulon moderator; Provisional	87.65
KOG4483|consensus	528		83.88
COG5638	622	Uncharacterized conserved protein [Function unknow	82.39
KOG2416|consensus	718		82.12
PRK14548	84	50S ribosomal protein L23P; Provisional	81.94

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=100.00  E-value=1.8e-35  Score=243.22  Aligned_cols=177  Identities=58%  Similarity=0.882  Sum_probs=152.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC--CCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP--DAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~--~~~~~~~~~   78 (184)
                      |++||+.||+|.+|+++..++|+|||+|.+.++|..|++.|||..+.|++|+|.+++......++++..  +....+++.
T Consensus       293 L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~  372 (481)
T TIGR01649       293 LFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYS  372 (481)
T ss_pred             HHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccccccc
Confidence            689999999999999998888999999999999999999999999999999999998776654443221  222346677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccCC---CceEEEEeCCHHHHHHH
Q psy17274         79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPKD---RKMALLQLDSIEEAITA  154 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~~---~~~afV~f~~~~~A~~A  154 (184)
                      .+..+|+..+...+..++.+|+.+|||+|||.++|+++|+++|+.||. .|..+++++..   +++|||+|++.++|.+|
T Consensus       373 ~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~A  452 (481)
T TIGR01649       373 SSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEA  452 (481)
T ss_pred             CCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHH
Confidence            777777777776666777889999999999999999999999999993 28889988644   68999999999999999


Q ss_pred             HHHhcCeecCCCC------eEEEEecCccc
Q psy17274        155 LIQMHNHQLSEQS------HLRVSFSKSNI  178 (184)
Q Consensus       155 i~~lng~~i~g~~------~l~v~~~~~~~  178 (184)
                      +..|||+.|.| +      .|+|+||++++
T Consensus       453 l~~ln~~~l~~-~~~~~~~~lkv~fs~~~~  481 (481)
T TIGR01649       453 LIALNHHQLNE-PNGSAPYHLKVSFSTSRI  481 (481)
T ss_pred             HHHhcCCccCC-CCCCccceEEEEeccCCC
Confidence            99999999999 5      49999999763

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG1190|consensus

Probab=100.00  E-value=8.7e-35  Score=223.62  Aligned_cols=178  Identities=69%  Similarity=1.069  Sum_probs=171.0

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      ||.||+.||+|.+|+|+.+++..|+|+|.++..|+-|++.|+|..++|++|+|.+|++..+.+|++++++.+..+||..+
T Consensus       315 LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~s  394 (492)
T KOG1190|consen  315 LFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNS  394 (492)
T ss_pred             HHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      +.+||..|+++++..++||+.+|++.|+|++++||+|+.+|..-|+.|.-.+++++++.+|.+++++.|+|..|+-.|++
T Consensus       395 pLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hn  474 (492)
T KOG1190|consen  395 PLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHN  474 (492)
T ss_pred             chhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhcccccc
Confidence            99999999999999999999999999999999999999999999977777888888899999999999999999999999


Q ss_pred             eecCCCCeEEEEecCccc
Q psy17274        161 HQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       161 ~~i~g~~~l~v~~~~~~~  178 (184)
                      +.+++.+.||||||++.+
T Consensus       475 h~lgen~hlRvSFSks~i  492 (492)
T KOG1190|consen  475 HYLGENHHLRVSFSKSTI  492 (492)
T ss_pred             ccCCCCceEEEEeecccC
Confidence            999886799999999763

>KOG1456|consensus

Probab=100.00  E-value=8.3e-32  Score=205.36  Aligned_cols=178  Identities=30%  Similarity=0.486  Sum_probs=163.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCCCCCCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEGQPDAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~~~~~~~~~~~~   78 (184)
                      ||+|||.||+|.+|++|+.+.|.|+|++.|..+.++|++.||+..++|.+|.|++|++..+..  |....+++++++||+
T Consensus       305 lFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys  384 (494)
T KOG1456|consen  305 LFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYS  384 (494)
T ss_pred             hhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcc
Confidence            799999999999999999999999999999999999999999999999999999999887753  344567789999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHH
Q psy17274         79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITAL  155 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai  155 (184)
                      .+.++||..|+..+++++++|+++|++.|.|..+||+.|..+|...+....+|+|++-.   ...|.+||++.++|.+||
T Consensus       385 ~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal  464 (494)
T KOG1456|consen  385 GSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEAL  464 (494)
T ss_pred             cccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998667889998722   367899999999999999


Q ss_pred             HHhcCeecCCC-----CeEEEEecCccc
Q psy17274        156 IQMHNHQLSEQ-----SHLRVSFSKSNI  178 (184)
Q Consensus       156 ~~lng~~i~g~-----~~l~v~~~~~~~  178 (184)
                      ..||+++|.+.     .+|++.||.+++
T Consensus       465 ~~~NH~pi~~p~gs~PfilKlcfsts~~  492 (494)
T KOG1456|consen  465 MKLNHYPIEGPNGSFPFILKLCFSTSKH  492 (494)
T ss_pred             HHhccccccCCCCCCCeeeeeeeccccc
Confidence            99999999875     479999998764

>KOG0148|consensus

Probab=100.00  E-value=3.1e-32  Score=199.83  Aligned_cols=160  Identities=18%  Similarity=0.356  Sum_probs=133.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.+-|.+||+|.+.+|++     +++||+||.|.+.++|++||+.|||..+.+|.|+-.|+.-+...+-.       ...
T Consensus        79 lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~-------~~l  151 (321)
T KOG0148|consen   79 LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG-------KPL  151 (321)
T ss_pred             HHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCC-------CCc
Confidence            457899999999999998     58999999999999999999999999999999999998743321100       000


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL  155 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai  155 (184)
                      .|..            ..+...+.++++||+|++..+||++|++.|++|| .|..|+|++ .+|+|||.|++.|.|.+||
T Consensus       152 tfde------------V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG-~I~EVRvFk-~qGYaFVrF~tkEaAahAI  217 (321)
T KOG0148|consen  152 TFDE------------VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG-PIQEVRVFK-DQGYAFVRFETKEAAAHAI  217 (321)
T ss_pred             cHHH------------HhccCCCCCceEEeCCcCccccHHHHHHhcccCC-cceEEEEec-ccceEEEEecchhhHHHHH
Confidence            0000            0111222578899999999999999999999999 999999995 8999999999999999999


Q ss_pred             HHhcCeecCCCCeEEEEecCccccccc
Q psy17274        156 IQMHNHQLSEQSHLRVSFSKSNIQDIR  182 (184)
Q Consensus       156 ~~lng~~i~g~~~l~v~~~~~~~~~~~  182 (184)
                      ..|||.+|+| +.++++|.|.....++
T Consensus       218 v~mNntei~G-~~VkCsWGKe~~~~~~  243 (321)
T KOG0148|consen  218 VQMNNTEIGG-QLVRCSWGKEGDDGIN  243 (321)
T ss_pred             HHhcCceeCc-eEEEEeccccCCCCCC
Confidence            9999999999 7999999998866554

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.98  E-value=5.7e-31  Score=216.57  Aligned_cols=171  Identities=23%  Similarity=0.343  Sum_probs=132.4

Q ss_pred             ChhhhccCCCeeEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNK-KDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|++||+|.+|.+++.. .++|||+|.+.++|.+|++.|||..++|  ++|+|+|++...+.+.+.....    +||
T Consensus       113 L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s----~dy  188 (481)
T TIGR01649       113 LYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDS----RDY  188 (481)
T ss_pred             HHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCC----CCC
Confidence            67899999999999998743 4799999999999999999999999975  5899999987665442221110    000


Q ss_pred             CCCCC-----------------------------C----------------CCC-------C--CC----------CCCC
Q psy17274         78 TASPL-----------------------------H----------------RFK-------K--PG----------SKNF   93 (184)
Q Consensus        78 ~~~~~-----------------------------~----------------~~~-------~--~~----------~~~~   93 (184)
                      +.+..                             .                +..       .  +.          ....
T Consensus       189 t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (481)
T TIGR01649       189 TNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYG  268 (481)
T ss_pred             cCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccC
Confidence            00000                             0                000       0  00          0000


Q ss_pred             CCCCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         94 QNIYPPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        94 ~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ....+++++|||+|||+ .+|+++|+++|++|| .|.+|+++.+.+++|||+|.+.++|..|+..|||..|.| ++|+|+
T Consensus       269 ~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG-~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g-~~l~v~  346 (481)
T TIGR01649       269 PAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG-NVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFG-KPLRVC  346 (481)
T ss_pred             CCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEE
Confidence            12245788999999997 699999999999999 999999997778999999999999999999999999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      +++..
T Consensus       347 ~s~~~  351 (481)
T TIGR01649       347 PSKQQ  351 (481)
T ss_pred             Ecccc
Confidence            99765

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.97  E-value=3e-30  Score=203.00  Aligned_cols=141  Identities=18%  Similarity=0.324  Sum_probs=122.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |+++|+.||+|++|+|+.     .++|||||+|.++++|++|++.|||..+.+++|+|.+++.....             
T Consensus       124 L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~-------------  190 (346)
T TIGR01659       124 LYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGES-------------  190 (346)
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccc-------------
Confidence            678999999999999986     35799999999999999999999999999999999987621100             


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                            ...++|||.|||..+|+++|+++|++|| .|..++|..+     .+++|||+|++.++
T Consensus       191 ----------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG-~V~~v~i~~d~~tg~~kG~aFV~F~~~e~  247 (346)
T TIGR01659       191 ----------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG-QIVQKNILRDKLTGTPRGVAFVRFNKREE  247 (346)
T ss_pred             ----------------------cccceeEEeCCCCcccHHHHHHHHHhcC-CEEEEEEeecCCCCccceEEEEEECCHHH
Confidence                                  0245699999999999999999999999 9999998763     25899999999999


Q ss_pred             HHHHHHHhcCeecCCC-CeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQ-SHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~  177 (184)
                      |.+||+.||+..+.+. ++|+|.+++..
T Consensus       248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       248 AQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             HHHHHHHhCCCccCCCceeEEEEECCcc
Confidence            9999999999998763 48999998754

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.97  E-value=2.8e-29  Score=207.46  Aligned_cols=152  Identities=13%  Similarity=0.228  Sum_probs=124.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.++++|++|++.|||..+.|++|+|.++.......+         ..
T Consensus       124 Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~---------~~  194 (612)
T TIGR01645       124 IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQP---------II  194 (612)
T ss_pred             HHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccc---------cc
Confidence            568999999999999976     3789999999999999999999999999999999985431111000         00


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                             ....        ......++|||+|||+.+++++|+++|+.|| .|.++++.+.     .+|+|||+|++.++
T Consensus       195 -------~~~~--------~~~~~~~rLfVgnLp~~vteedLk~lFs~FG-~I~svrl~~D~~tgksKGfGFVeFe~~e~  258 (612)
T TIGR01645       195 -------DMVQ--------EEAKKFNRIYVASVHPDLSETDIKSVFEAFG-EIVKCQLARAPTGRGHKGYGFIEYNNLQS  258 (612)
T ss_pred             -------cccc--------ccccccceEEeecCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence                   0000        0011346899999999999999999999999 9999998762     47999999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      |.+|+..|||..++| +.|+|.++..+.
T Consensus       259 A~kAI~amNg~elgG-r~LrV~kAi~pP  285 (612)
T TIGR01645       259 QSEAIASMNLFDLGG-QYLRVGKCVTPP  285 (612)
T ss_pred             HHHHHHHhCCCeeCC-eEEEEEecCCCc
Confidence            999999999999999 899999988653

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.97  E-value=1.6e-28  Score=195.23  Aligned_cols=176  Identities=17%  Similarity=0.272  Sum_probs=125.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCC-------
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKE-------   66 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~-------   66 (184)
                      |.++|++||.|..++++.     .++|+|||+|.+.++|+.|++.|||..+.|  .+|.|.++..........       
T Consensus       106 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~  185 (352)
T TIGR01661       106 LESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEA  185 (352)
T ss_pred             HHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhc
Confidence            467999999999999876     257999999999999999999999999887  678888875433110000       


Q ss_pred             ----CCCCCCc---------------ccccC-------CCC-----------C---CCCCCCCCCC----------CCCC
Q psy17274         67 ----GQPDAGL---------------TKDYT-------ASP-----------L---HRFKKPGSKN----------FQNI   96 (184)
Q Consensus        67 ----~~~~~~~---------------~~~~~-------~~~-----------~---~~~~~~~~~~----------~~~~   96 (184)
                          .....+.               ...+.       ...           .   .+...+....          ....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (352)
T TIGR01661       186 VQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAAS  265 (352)
T ss_pred             ccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCC
Confidence                0000000               00000       000           0   0000000000          0000


Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ...+.+|||+|||+.+++++|+++|++|| .|.+++|+.+     .+|+|||+|++.++|..||..|||..++| |.|+|
T Consensus       266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG-~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-r~i~V  343 (352)
T TIGR01661       266 DGAGYCIFVYNLSPDTDETVLWQLFGPFG-AVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-RVLQV  343 (352)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC-eEEEE
Confidence            11345799999999999999999999999 9999999863     37999999999999999999999999999 89999


Q ss_pred             EecCccc
Q psy17274        172 SFSKSNI  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      +|.....
T Consensus       344 ~~~~~~~  350 (352)
T TIGR01661       344 SFKTNKA  350 (352)
T ss_pred             EEccCCC
Confidence            9987654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0117|consensus

Probab=99.96  E-value=2.9e-28  Score=189.58  Aligned_cols=172  Identities=21%  Similarity=0.356  Sum_probs=128.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEccCccc----cCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISKHQAV----QLPKEGQPD   70 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~~~~~----~~~~~~~~~   70 (184)
                      |.-||++-|+|-++++|.     .++|||||.|++.++|+.||+.||+.++. |+.|.|+.|-..+.    .+|+....+
T Consensus       100 LvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~ke  179 (506)
T KOG0117|consen  100 LVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKE  179 (506)
T ss_pred             hHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHH
Confidence            457999999999999998     47999999999999999999999999996 89999998765543    123322110


Q ss_pred             ------------C------CcccccCCCC--------CC------------------------CCCCCCCCCCCCCCCCC
Q psy17274         71 ------------A------GLTKDYTASP--------LH------------------------RFKKPGSKNFQNIYPPS  100 (184)
Q Consensus        71 ------------~------~~~~~~~~~~--------~~------------------------~~~~~~~~~~~~~~~~~  100 (184)
                                  .      .+..+...++        ++                        .+..|...........-
T Consensus       180 eIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~V  259 (506)
T KOG0117|consen  180 EILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKV  259 (506)
T ss_pred             HHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhe
Confidence                        0      0000000000        00                        00011110000111245


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++|||.||+.++|++.|+.+|++|| .|++|+.+   +.+|||+|.+.++|.+||+.|||+.|+| ..|.|+++|++
T Consensus       260 KvLYVRNL~~~tTeE~lk~~F~~~G-~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG-~~iEvtLAKP~  331 (506)
T KOG0117|consen  260 KVLYVRNLMESTTEETLKKLFNEFG-KVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDG-SPIEVTLAKPV  331 (506)
T ss_pred             eeeeeeccchhhhHHHHHHHHHhcc-ceEEeecc---cceeEEeecchHHHHHHHHHhcCceecC-ceEEEEecCCh
Confidence            7899999999999999999999999 99999755   5699999999999999999999999999 69999999987

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.96  E-value=7.6e-28  Score=191.31  Aligned_cols=142  Identities=18%  Similarity=0.301  Sum_probs=122.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |+++|++||+|.+|++++     .++|||||+|.++++|.+|++.|||..+.|++|.|++++.....             
T Consensus        20 l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~-------------   86 (352)
T TIGR01661        20 IRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS-------------   86 (352)
T ss_pred             HHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc-------------
Confidence            678999999999999987     26799999999999999999999999999999999988621100             


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                            ....+|||+|||..+++++|+++|++|| .|..+++..+     .+++|||+|++.++
T Consensus        87 ----------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~  143 (352)
T TIGR01661        87 ----------------------IKGANLYVSGLPKTMTQHELESIFSPFG-QIITSRILSDNVTGLSKGVGFIRFDKRDE  143 (352)
T ss_pred             ----------------------cccceEEECCccccCCHHHHHHHHhccC-CEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence                                  0245699999999999999999999999 8988888652     36899999999999


Q ss_pred             HHHHHHHhcCeecCCC-CeEEEEecCccc
Q psy17274        151 AITALIQMHNHQLSEQ-SHLRVSFSKSNI  178 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~~  178 (184)
                      |..|+..|||..+.|. ++|+|.|+..+.
T Consensus       144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~  172 (352)
T TIGR01661       144 ADRAIKTLNGTTPSGCTEPITVKFANNPS  172 (352)
T ss_pred             HHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence            9999999999999873 478999987554

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.95  E-value=6e-27  Score=192.09  Aligned_cols=150  Identities=20%  Similarity=0.359  Sum_probs=123.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|.+|+ .|+|..+.|++|.|.++............       
T Consensus       106 l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-------  177 (457)
T TIGR01622       106 LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAAT-------  177 (457)
T ss_pred             HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhccc-------
Confidence            578999999999999987     36899999999999999999 59999999999999876532211100000       


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~  150 (184)
                             .   .+      ...+.+++|||+|||..+|+++|+++|++|| .|..|.+..     ..+|+|||+|.+.++
T Consensus       178 -------~---~~------~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~g~afV~f~~~e~  240 (457)
T TIGR01622       178 -------H---QP------GDIPNFLKLYVGNLHFNITEQELRQIFEPFG-DIEDVQLHRDPETGRSKGFGFIQFHDAEE  240 (457)
T ss_pred             -------c---cC------CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence                   0   00      0112367899999999999999999999999 999998875     236899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      |..|+..|||..|.| +.|+|.|+..
T Consensus       241 A~~A~~~l~g~~i~g-~~i~v~~a~~  265 (457)
T TIGR01622       241 AKEALEVMNGFELAG-RPIKVGYAQD  265 (457)
T ss_pred             HHHHHHhcCCcEECC-EEEEEEEccC
Confidence            999999999999999 8999999763

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.95  E-value=1.8e-26  Score=193.52  Aligned_cols=141  Identities=20%  Similarity=0.299  Sum_probs=122.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |+++|++||.|.+|++++     .++|||||+|.+.++|++|++.||+..+.|++|+|.|+..+..              
T Consensus        17 L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~--------------   82 (562)
T TIGR01628        17 LYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS--------------   82 (562)
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc--------------
Confidence            689999999999999987     3579999999999999999999999999999999998752111              


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEA  151 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A  151 (184)
                             .+..            ...+|||+|||.++++++|+++|+.|| .|..|++..+    ++|+|||+|++.++|
T Consensus        83 -------~~~~------------~~~~vfV~nLp~~~~~~~L~~~F~~~G-~i~~~~i~~~~~g~skg~afV~F~~~e~A  142 (562)
T TIGR01628        83 -------LRRS------------GVGNIFVKNLDKSVDNKALFDTFSKFG-NILSCKVATDENGKSRGYGFVHFEKEESA  142 (562)
T ss_pred             -------cccc------------CCCceEEcCCCccCCHHHHHHHHHhcC-CcceeEeeecCCCCcccEEEEEECCHHHH
Confidence                   0000            234699999999999999999999999 9999988752    478999999999999


Q ss_pred             HHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        152 ITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       152 ~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+|++.|||..+.| +.|.|.....
T Consensus       143 ~~Ai~~lng~~~~~-~~i~v~~~~~  166 (562)
T TIGR01628       143 KAAIQKVNGMLLND-KEVYVGRFIK  166 (562)
T ss_pred             HHHHHHhcccEecC-ceEEEecccc
Confidence            99999999999999 8999976544

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.94  E-value=5.6e-26  Score=187.58  Aligned_cols=173  Identities=18%  Similarity=0.350  Sum_probs=124.8

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEccCccc----cCCCCCCCC-
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISKHQAV----QLPKEGQPD-   70 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~~~~~----~~~~~~~~~-   70 (184)
                      |.++|++||.|.+|+|++    .++|||||+|.+.++|++||+.|||..+. |+.|.|..+.....    .+|...+.. 
T Consensus        75 L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~Teee  154 (578)
T TIGR01648        75 LVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREE  154 (578)
T ss_pred             HHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHH
Confidence            578999999999999987    47899999999999999999999999986 78887776542211    011110000 


Q ss_pred             -----------------------CCcc-----cccCCC----------CCCC-----------CCCCCCCCCCCCCCCCC
Q psy17274         71 -----------------------AGLT-----KDYTAS----------PLHR-----------FKKPGSKNFQNIYPPSP  101 (184)
Q Consensus        71 -----------------------~~~~-----~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~  101 (184)
                                             ....     ..|.+.          ...+           +..|............+
T Consensus       155 L~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k  234 (578)
T TIGR01648       155 ILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVK  234 (578)
T ss_pred             HHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccccccccc
Confidence                                   0000     000000          0000           00011100111122467


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +|||+|||.++|+++|+++|++|  | .|++|+++   +++|||+|++.++|.+|++.|||..|.| +.|+|+|++++.
T Consensus       235 ~LfVgNL~~~~tee~L~~~F~~f~~G-~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~G-r~I~V~~Akp~~  308 (578)
T TIGR01648       235 ILYVRNLMTTTTEEIIEKSFSEFKPG-KVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEG-SEIEVTLAKPVD  308 (578)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCC-ceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEEccCCC
Confidence            89999999999999999999999  9 99999765   4799999999999999999999999999 899999998753

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.94  E-value=4.7e-26  Score=191.10  Aligned_cols=158  Identities=20%  Similarity=0.349  Sum_probs=126.2

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec----CcEEEEEEccCccccCCCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF----GKQMRVMISKHQAVQLPKEGQPDAG   72 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v~~s~~~~~~~~~~~~~~~~   72 (184)
                      |.++|+.||.|.++.++.    .++|+|||+|.+.++|.+|++.|+|..+.    |+.|.|.++.........       
T Consensus       195 L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~-------  267 (562)
T TIGR01628       195 LRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAE-------  267 (562)
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHH-------
Confidence            468999999999999987    35789999999999999999999999999    999999876533221000       


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCH
Q psy17274         73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSI  148 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~  148 (184)
                      ....+......+          .....+.+|||+|||+.+|+++|+++|++|| .|.+++++.+    ++|+|||+|.+.
T Consensus       268 ~~~~~~~~~~~~----------~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G-~i~~~~i~~d~~g~~~g~gfV~f~~~  336 (562)
T TIGR01628       268 LRRKFEELQQER----------KMKAQGVNLYVKNLDDTVTDEKLRELFSECG-EITSAKVMLDEKGVSRGFGFVCFSNP  336 (562)
T ss_pred             HHhhHHhhhhhh----------hcccCCCEEEEeCCCCccCHHHHHHHHHhcC-CeEEEEEEECCCCCcCCeEEEEeCCH
Confidence            000000000000          0111466799999999999999999999999 9999999763    379999999999


Q ss_pred             HHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        149 EEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       149 ~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++|.+|+..|||..++| ++|.|.|+...
T Consensus       337 ~~A~~A~~~~~g~~~~g-k~l~V~~a~~k  364 (562)
T TIGR01628       337 EEANRAVTEMHGRMLGG-KPLYVALAQRK  364 (562)
T ss_pred             HHHHHHHHHhcCCeeCC-ceeEEEeccCc
Confidence            99999999999999999 89999999865

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0145|consensus

Probab=99.94  E-value=2.6e-26  Score=168.23  Aligned_cols=145  Identities=19%  Similarity=0.332  Sum_probs=126.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |..||+..|+|+++++++     .+-||+||-|.+++||++|+..|||..+..+.|+|.|+++....+            
T Consensus        58 ~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~I------------  125 (360)
T KOG0145|consen   58 LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSI------------  125 (360)
T ss_pred             HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhh------------
Confidence            357999999999999998     367999999999999999999999999999999999998332211            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                             ....|||++||.++|..||.++|++|| .|..-+|+.+     ++|.|||.|+..++
T Consensus       126 -----------------------k~aNLYvSGlPktMtqkelE~iFs~fG-rIItSRiL~dqvtg~srGVgFiRFDKr~E  181 (360)
T KOG0145|consen  126 -----------------------KDANLYVSGLPKTMTQKELEQIFSPFG-RIITSRILVDQVTGLSRGVGFIRFDKRIE  181 (360)
T ss_pred             -----------------------cccceEEecCCccchHHHHHHHHHHhh-hhhhhhhhhhcccceecceeEEEecchhH
Confidence                                   234599999999999999999999999 7766666542     48999999999999


Q ss_pred             HHHHHHHhcCeecCCC-CeEEEEecCcccccc
Q psy17274        151 AITALIQMHNHQLSEQ-SHLRVSFSKSNIQDI  181 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~~~~~  181 (184)
                      |.+||+.|||+.-.|+ .+|.|.|+..+.+..
T Consensus       182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t  213 (360)
T KOG0145|consen  182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKT  213 (360)
T ss_pred             HHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence            9999999999999886 589999998885544

>KOG4206|consensus

Probab=99.93  E-value=7e-25  Score=157.97  Aligned_cols=172  Identities=19%  Similarity=0.386  Sum_probs=132.0

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-CCC----CCC--
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-EGQ----PDA--   71 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-~~~----~~~--   71 (184)
                      ||.||++||.|.+|..++  ..+|+|||.|.+.+.|..|+..|+|+.|+|++++|+|++.+.--..+ ++.    +..  
T Consensus        30 L~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~  109 (221)
T KOG4206|consen   30 LYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKIN  109 (221)
T ss_pred             HHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccc
Confidence            688999999999999887  57999999999999999999999999999999999999866432211 110    000  


Q ss_pred             -------CcccccCCCCC--CCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEE
Q psy17274         72 -------GLTKDYTASPL--HRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMAL  142 (184)
Q Consensus        72 -------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~af  142 (184)
                             +.-.+......  ++...|... .....+|+.+|++.|||..++.+.|..+|.+|. ....|++++..++.||
T Consensus       110 ~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~-g~keir~i~~~~~iAf  187 (221)
T KOG4206|consen  110 GEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFP-GFKEIRLIPPRSGIAF  187 (221)
T ss_pred             cccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHHHHHHhhCc-ccceeEeccCCCceeE
Confidence                   00000000000  000001000 123356889999999999999999999999999 7889999987889999


Q ss_pred             EEeCCHHHHHHHHHHhcCeecC-CCCeEEEEecC
Q psy17274        143 LQLDSIEEAITALIQMHNHQLS-EQSHLRVSFSK  175 (184)
Q Consensus       143 V~f~~~~~A~~Ai~~lng~~i~-g~~~l~v~~~~  175 (184)
                      |+|.+...|..|...++|..|- . +.++|+|++
T Consensus       188 ve~~~d~~a~~a~~~lq~~~it~~-~~m~i~~a~  220 (221)
T KOG4206|consen  188 VEFLSDRQASAAQQALQGFKITKK-NTMQITFAK  220 (221)
T ss_pred             EecchhhhhHHHhhhhccceeccC-ceEEecccC
Confidence            9999999999999999999997 5 799999986

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.93  E-value=1.8e-24  Score=179.63  Aligned_cols=167  Identities=13%  Similarity=0.169  Sum_probs=122.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|+.||.|..+.++.     .++|||||+|.+.++|..|++.|||..+.|++|.|+++.................  
T Consensus       312 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~--  389 (509)
T TIGR01642       312 IKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAP--  389 (509)
T ss_pred             HHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccc--
Confidence            568999999999999876     2689999999999999999999999999999999999864432211100000000  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC--C--------CHHHHHHHHHhcCCceeEEEEccC--------C
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS--V--------TEDELKEAFTEKGFTVKGFKFFPK--------D  137 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~--~--------t~~~l~~~F~~~G~~v~~v~v~~~--------~  137 (184)
                       ..... ...   ..........|+++|+|.|+...  +        ..++|+++|++|| .|..|.|...        +
T Consensus       390 -~~~~~-~~~---~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G-~v~~v~i~~~~~~~~~~~~  463 (509)
T TIGR01642       390 -VTLLA-KAL---SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG-PLINIVIPRPNGDRNSTPG  463 (509)
T ss_pred             -ccccc-ccc---hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC-CeeEEEeeccCcCCCcCCC
Confidence             00000 000   00000111237889999999632  1        1368999999999 9999988642        2


Q ss_pred             CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        138 RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       138 ~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .|+|||+|++.++|.+|+..|||..++| +.|.|+|...
T Consensus       464 ~G~~fV~F~~~e~A~~A~~~lnGr~~~g-r~v~~~~~~~  501 (509)
T TIGR01642       464 VGKVFLEYADVRSAEKAMEGMNGRKFND-RVVVAAFYGE  501 (509)
T ss_pred             cceEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEeCH
Confidence            4789999999999999999999999999 8999999653

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0109|consensus

Probab=99.93  E-value=8.9e-26  Score=167.50  Aligned_cols=134  Identities=25%  Similarity=0.437  Sum_probs=122.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |..||++||+|+.+.|+   |.||||+.++...|..||+.|+|..+.|..|.|+-|+.+..                   
T Consensus        19 lr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk-------------------   76 (346)
T KOG0109|consen   19 LRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK-------------------   76 (346)
T ss_pred             HHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-------------------
Confidence            45799999999999997   58999999999999999999999999999999998873211                   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                                        ++++|+|+|+.+.++.++|+..|++|| .|..++|.+   +++||+|+..++|..|+..|||
T Consensus        77 ------------------~stkl~vgNis~tctn~ElRa~fe~yg-pviecdivk---dy~fvh~d~~eda~~air~l~~  134 (346)
T KOG0109|consen   77 ------------------ASTKLHVGNISPTCTNQELRAKFEKYG-PVIECDIVK---DYAFVHFDRAEDAVEAIRGLDN  134 (346)
T ss_pred             ------------------CccccccCCCCccccCHHHhhhhcccC-Cceeeeeec---ceeEEEEeeccchHHHHhcccc
Confidence                              567899999999999999999999999 888898864   8999999999999999999999


Q ss_pred             eecCCCCeEEEEecCcccc
Q psy17274        161 HQLSEQSHLRVSFSKSNIQ  179 (184)
Q Consensus       161 ~~i~g~~~l~v~~~~~~~~  179 (184)
                      +.+.| ++++|..|.++++
T Consensus       135 ~~~~g-k~m~vq~stsrlr  152 (346)
T KOG0109|consen  135 TEFQG-KRMHVQLSTSRLR  152 (346)
T ss_pred             ccccc-ceeeeeeeccccc
Confidence            99999 8999999988754

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.92  E-value=5.1e-24  Score=176.92  Aligned_cols=159  Identities=16%  Similarity=0.237  Sum_probs=113.0

Q ss_pred             CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCC
Q psy17274          9 GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKP   88 (184)
Q Consensus         9 G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (184)
                      +.|..+.+. ..+|||||+|.++++|..|| .|||..|.|++|.|...+.... .+...........+..   ......+
T Consensus       212 ~~v~~~~~~-~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~  285 (509)
T TIGR01642       212 KHVSSVNIN-KEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIP-VPQITPEVSQKNPDDN---AKNVEKL  285 (509)
T ss_pred             CceEEEEEC-CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCC-ccccCCCCCCCCCccc---ccccccc
Confidence            456666654 46899999999999999999 6999999999999975442211 0100000000000000   0000000


Q ss_pred             CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeec
Q psy17274         89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQL  163 (184)
Q Consensus        89 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i  163 (184)
                        ........+.++|||+|||..+|+++|+++|+.|| .|..+.++..     ++|+|||+|.+.++|..|+..|||..+
T Consensus       286 --~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~  362 (509)
T TIGR01642       286 --VNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG-DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT  362 (509)
T ss_pred             --cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence              00001112467899999999999999999999999 8999988752     479999999999999999999999999


Q ss_pred             CCCCeEEEEecCcc
Q psy17274        164 SEQSHLRVSFSKSN  177 (184)
Q Consensus       164 ~g~~~l~v~~~~~~  177 (184)
                      +| +.|+|.++...
T Consensus       363 ~~-~~l~v~~a~~~  375 (509)
T TIGR01642       363 GD-NKLHVQRACVG  375 (509)
T ss_pred             CC-eEEEEEECccC
Confidence            99 89999998654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0131|consensus

Probab=99.92  E-value=9e-25  Score=152.19  Aligned_cols=142  Identities=18%  Similarity=0.309  Sum_probs=118.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      ||+||-+.|+|.+|++.+     ..+|||||+|.+.|+|+-|++-||...++|++|+|..+.......            
T Consensus        26 l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl------------   93 (203)
T KOG0131|consen   26 LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNL------------   93 (203)
T ss_pred             HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccc------------
Confidence            689999999999999877     378999999999999999999999999999999998654111100            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~  150 (184)
                                            .-+..|||+||.+.++|..|.++|+.||+-+..-++++     +.+++|||.|++.+.
T Consensus        94 ----------------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea  151 (203)
T KOG0131|consen   94 ----------------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA  151 (203)
T ss_pred             ----------------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence                                  02346999999999999999999999993222223333     346899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +..|+..|||+.+.+ +++.|+|+...
T Consensus       152 sd~ai~s~ngq~l~n-r~itv~ya~k~  177 (203)
T KOG0131|consen  152 SDAAIGSMNGQYLCN-RPITVSYAFKK  177 (203)
T ss_pred             HHHHHHHhccchhcC-CceEEEEEEec
Confidence            999999999999999 89999998765

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.92  E-value=2.8e-23  Score=170.46  Aligned_cols=175  Identities=18%  Similarity=0.253  Sum_probs=124.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-------CCC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-------EGQ   68 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-------~~~   68 (184)
                      |.++|++||.|.+|.++.     .++|||||+|.+.++|..|++.|||..+.|++|.|.|+.........       ...
T Consensus       203 l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~  282 (457)
T TIGR01622       203 LRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQ  282 (457)
T ss_pred             HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhcccccc
Confidence            568999999999999886     35799999999999999999999999999999999997532211000       000


Q ss_pred             CCC-----------------------Cc-c----------cccCCCCCCCCCCC------C--------CCCCCCCCCCC
Q psy17274         69 PDA-----------------------GL-T----------KDYTASPLHRFKKP------G--------SKNFQNIYPPS  100 (184)
Q Consensus        69 ~~~-----------------------~~-~----------~~~~~~~~~~~~~~------~--------~~~~~~~~~~~  100 (184)
                      ...                       +. .          .............|      .        .........++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (457)
T TIGR01622       283 QQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLAT  362 (457)
T ss_pred             ccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCC
Confidence            000                       00 0          00000000000000      0        00000122467


Q ss_pred             CEEEEeCCCCCCC----------HHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274        101 PTLHLSNIPASVT----------EDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL  169 (184)
Q Consensus       101 ~~l~v~nlp~~~t----------~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l  169 (184)
                      ++|+|.||....+          .+||++.|++|| .|+.|.|. +...|.+||+|.+.++|..|+..|||..++| +.|
T Consensus       363 ~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G-~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~g-r~i  440 (457)
T TIGR01622       363 TCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG-GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGG-KMI  440 (457)
T ss_pred             cEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC-CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCC-eEE
Confidence            8999999965444          368999999999 99999887 4557999999999999999999999999999 899


Q ss_pred             EEEecCcc
Q psy17274        170 RVSFSKSN  177 (184)
Q Consensus       170 ~v~~~~~~  177 (184)
                      .+.|....
T Consensus       441 ~~~~~~~~  448 (457)
T TIGR01622       441 TAAFVVND  448 (457)
T ss_pred             EEEEEcHH
Confidence            99998654

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0145|consensus

Probab=99.91  E-value=5.4e-24  Score=156.07  Aligned_cols=175  Identities=15%  Similarity=0.220  Sum_probs=126.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccC---CC-----
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQL---PK-----   65 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~---~~-----   65 (184)
                      |-++|++||.|..-+|+.     -++|.+||.|...++|+.||..|||..-.|  .+|.|+|+..+....   +.     
T Consensus       144 lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~  223 (360)
T KOG0145|consen  144 LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQ  223 (360)
T ss_pred             HHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhc
Confidence            357999999998877776     378999999999999999999999998887  579999987553211   00     


Q ss_pred             -CCCCCCCcccc------cCCCC-----CCCCCCCCC--------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Q psy17274         66 -EGQPDAGLTKD------YTASP-----LHRFKKPGS--------KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG  125 (184)
Q Consensus        66 -~~~~~~~~~~~------~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G  125 (184)
                       +.....+...+      +....     ..||.+-.-        .+.........+|||.||.++.+|.-|+++|.+||
T Consensus       224 sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFG  303 (360)
T KOG0145|consen  224 SPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFG  303 (360)
T ss_pred             CccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence             00000000000      00000     011111000        00001111357899999999999999999999999


Q ss_pred             CceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        126 FTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       126 ~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                       .|..|+|+++     =||+|||.|.+.++|..||..|||+.+++ |.|+|+|....
T Consensus       304 -Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-rvLQVsFKtnk  358 (360)
T KOG0145|consen  304 -AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-RVLQVSFKTNK  358 (360)
T ss_pred             -ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc-eEEEEEEecCC
Confidence             9999999973     17999999999999999999999999999 99999997653

>KOG0144|consensus

Probab=99.91  E-value=3.7e-24  Score=166.27  Aligned_cols=142  Identities=17%  Similarity=0.330  Sum_probs=120.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCce-ecC--cEEEEEEccCccccCCCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLR-VFG--KQMRVMISKHQAVQLPKEGQPDAG   72 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~v~~s~~~~~~~~~~~~~~~~   72 (184)
                      |..+|++||.|.+|.+++     .++|||||.|.+.++|.+|+.+|++.. +.|  .+|.|+|+......+         
T Consensus        51 lr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~---------  121 (510)
T KOG0144|consen   51 LRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI---------  121 (510)
T ss_pred             HHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc---------
Confidence            467999999999999998     378999999999999999999999964 445  667777664221110         


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCH
Q psy17274         73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSI  148 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~  148 (184)
                                               +..+.|||+-|+..+||.|++++|++|| .|++|.|.+.    +||+|||.|.+.
T Consensus       122 -------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG-~Ied~~ilrd~~~~sRGcaFV~fstk  175 (510)
T KOG0144|consen  122 -------------------------VEERKLFVGMLSKQCTENEVREIFSRFG-HIEDCYILRDPDGLSRGCAFVKFSTK  175 (510)
T ss_pred             -------------------------ccchhhhhhhccccccHHHHHHHHHhhC-ccchhhheecccccccceeEEEEehH
Confidence                                     1355799999999999999999999999 9999999873    489999999999


Q ss_pred             HHHHHHHHHhcCe-ecCCC-CeEEEEecCcc
Q psy17274        149 EEAITALIQMHNH-QLSEQ-SHLRVSFSKSN  177 (184)
Q Consensus       149 ~~A~~Ai~~lng~-~i~g~-~~l~v~~~~~~  177 (184)
                      +.|..||+.|||. .+.|+ -+|.|.|+..+
T Consensus       176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtq  206 (510)
T KOG0144|consen  176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQ  206 (510)
T ss_pred             HHHHHHHHhhccceeeccCCCceEEEecccC
Confidence            9999999999997 56775 59999999876

>KOG1190|consensus

Probab=99.91  E-value=2.5e-23  Score=160.72  Aligned_cols=175  Identities=25%  Similarity=0.352  Sum_probs=133.6

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|++||.|.+|..+. +..-+|+|+|.+++.|+.|...|+|+.++.  |.|+|.||+.....+.....    ..+||
T Consensus       167 LHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynnd----kSRDy  242 (492)
T KOG1190|consen  167 LHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNND----KSRDY  242 (492)
T ss_pred             HHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecccc----ccccc
Confidence            689999999999987666 455669999999999999999999998874  78999999876554322211    11222


Q ss_pred             CCCCCC-------------------------CCCCCC-----CCCCCCCCCC--CCEEEEeCCC-CCCCHHHHHHHHHhc
Q psy17274         78 TASPLH-------------------------RFKKPG-----SKNFQNIYPP--SPTLHLSNIP-ASVTEDELKEAFTEK  124 (184)
Q Consensus        78 ~~~~~~-------------------------~~~~~~-----~~~~~~~~~~--~~~l~v~nlp-~~~t~~~l~~~F~~~  124 (184)
                      ++....                         ....|.     ......+..+  +.+|.|.||. +.+|.+.|..+|+-|
T Consensus       243 Tnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY  322 (492)
T KOG1190|consen  243 TNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY  322 (492)
T ss_pred             cCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh
Confidence            221100                         000000     0011122223  4788899986 799999999999999


Q ss_pred             CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccccc
Q psy17274        125 GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDI  181 (184)
Q Consensus       125 G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~~~  181 (184)
                      | .|.+|+|+.+.+..|.|+|.+...|.-|+.+|+|..+.| ++|+|+|||.+-+.+
T Consensus       323 G-dVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~g-k~lrvt~SKH~~vql  377 (492)
T KOG1190|consen  323 G-DVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYG-KKLRVTLSKHTNVQL  377 (492)
T ss_pred             c-ceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecC-ceEEEeeccCccccC
Confidence            9 999999998888999999999999999999999999999 899999999885544

>KOG0123|consensus

Probab=99.90  E-value=3.8e-23  Score=163.77  Aligned_cols=134  Identities=22%  Similarity=0.344  Sum_probs=120.8

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      ||++|+++|+|.+|++.+  .+-|||||.|.++++|++||+.||...+.|++++|.|+..+                   
T Consensus        15 l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-------------------   75 (369)
T KOG0123|consen   15 LFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-------------------   75 (369)
T ss_pred             HHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------------
Confidence            689999999999999887  46799999999999999999999999999999999998611                   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHH
Q psy17274         79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITAL  155 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai  155 (184)
                                          |+ .+||.||+++++..+|.++|+.|| +|.+|++..+.   +|+ ||+|++.++|.+|+
T Consensus        76 --------------------~~-~~~i~nl~~~~~~~~~~d~f~~~g-~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai  132 (369)
T KOG0123|consen   76 --------------------PS-LVFIKNLDESIDNKSLYDTFSEFG-NILSCKVATDENGSKGY-FVQFESEESAKKAI  132 (369)
T ss_pred             --------------------Cc-eeeecCCCcccCcHHHHHHHHhhc-CeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence                                11 199999999999999999999999 99999998643   678 99999999999999


Q ss_pred             HHhcCeecCCCCeEEEEecCcc
Q psy17274        156 IQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       156 ~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +.|||..+.| ++|.|......
T Consensus       133 ~~~ng~ll~~-kki~vg~~~~~  153 (369)
T KOG0123|consen  133 EKLNGMLLNG-KKIYVGLFERK  153 (369)
T ss_pred             HHhcCcccCC-CeeEEeeccch
Confidence            9999999999 89999765543

>KOG0127|consensus

Probab=99.89  E-value=7.6e-22  Score=157.37  Aligned_cols=175  Identities=19%  Similarity=0.240  Sum_probs=124.3

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCC------------
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLP------------   64 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~------------   64 (184)
                      |..+|+.||.|..|.|.+    ...|||||+|....+|..|++.+||..+.||+|.|.|+-.......            
T Consensus       134 Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~  213 (678)
T KOG0127|consen  134 LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKA  213 (678)
T ss_pred             HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhc
Confidence            567999999999999887    3579999999999999999999999999999999999754322100            


Q ss_pred             --C----C-CCCCC------------Cccc--cc-----C---C-----CCCCCC-----CCCCCC--CC--CCCCCCCC
Q psy17274         65 --K----E-GQPDA------------GLTK--DY-----T---A-----SPLHRF-----KKPGSK--NF--QNIYPPSP  101 (184)
Q Consensus        65 --~----~-~~~~~------------~~~~--~~-----~---~-----~~~~~~-----~~~~~~--~~--~~~~~~~~  101 (184)
                        .    + ..++.            .+-.  |.     .   .     +.....     ..+...  +.  .....-..
T Consensus       214 ~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~  293 (678)
T KOG0127|consen  214 VKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGK  293 (678)
T ss_pred             cchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccc
Confidence              0    0 00000            0000  00     0   0     000000     000000  10  11112348


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHh-----cC-eecCCCCeEE
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQM-----HN-HQLSEQSHLR  170 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~l-----ng-~~i~g~~~l~  170 (184)
                      +|||.|||+++|+++|.++|++|| .|..+.+..     .++|.|||.|.+..+|..||...     .| ..|.| |.|+
T Consensus       294 tVFvRNL~fD~tEEel~~~fskFG-~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G-R~Lk  371 (678)
T KOG0127|consen  294 TVFVRNLPFDTTEEELKEHFSKFG-EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG-RLLK  371 (678)
T ss_pred             eEEEecCCccccHHHHHHHHHhhc-cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec-cEEe
Confidence            999999999999999999999999 998887765     24799999999999999999987     45 78899 8999


Q ss_pred             EEecCcc
Q psy17274        171 VSFSKSN  177 (184)
Q Consensus       171 v~~~~~~  177 (184)
                      |..+-.+
T Consensus       372 v~~Av~R  378 (678)
T KOG0127|consen  372 VTLAVTR  378 (678)
T ss_pred             eeeccch
Confidence            9987543

>KOG0127|consensus

Probab=99.88  E-value=5.6e-22  Score=158.11  Aligned_cols=165  Identities=16%  Similarity=0.245  Sum_probs=126.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCC-CCCCCCCCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLP-KEGQPDAGLT   74 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~-~~~~~~~~~~   74 (184)
                      |-++||..|+|..+-+..     .++||+||.|+-.||+++|+...++..|.|+.|.|.+++....... ..+... ..-
T Consensus        22 L~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~-~ve  100 (678)
T KOG0127|consen   22 LEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENK-AVE  100 (678)
T ss_pred             HHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccch-hhh
Confidence            457899999999988776     3689999999999999999999999999999999999875433210 000000 000


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHH
Q psy17274         75 KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEE  150 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~  150 (184)
                      +        +...+. .......-|-..|.|.|||..+.+.+|+.+|+.|| .|..|.|..+.    .|+|||+|.+..+
T Consensus       101 K--------~~~q~~-~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G-~V~Ei~IP~k~dgklcGFaFV~fk~~~d  170 (678)
T KOG0127|consen  101 K--------PIEQKR-PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG-KVVEIVIPRKKDGKLCGFAFVQFKEKKD  170 (678)
T ss_pred             c--------ccccCC-cchhhccCccceEEeecCCcccCcHHHHHHHhhcc-eEEEEEcccCCCCCccceEEEEEeeHHH
Confidence            0        000000 00001122467899999999999999999999999 99999775421    5899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      |..|++.+||..|.| |+|-|.|+-+.
T Consensus       171 A~~Al~~~N~~~i~g-R~VAVDWAV~K  196 (678)
T KOG0127|consen  171 AEKALEFFNGNKIDG-RPVAVDWAVDK  196 (678)
T ss_pred             HHHHHHhccCceecC-ceeEEeeeccc
Confidence            999999999999999 99999998654

>KOG0110|consensus

Probab=99.87  E-value=1.6e-21  Score=159.54  Aligned_cols=149  Identities=21%  Similarity=0.304  Sum_probs=123.8

Q ss_pred             ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAG   72 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~   72 (184)
                      |..+|.++|.|.++.|...        +.|||||+|.++++|+.|++.|+|+.+.|..|.|++|......     ..+  
T Consensus       532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~-----~~g--  604 (725)
T KOG0110|consen  532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAS-----TVG--  604 (725)
T ss_pred             HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccc-----ccc--
Confidence            3578999999999987651        3499999999999999999999999999999999999721110     000  


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCC
Q psy17274         73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDS  147 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~  147 (184)
                        +       .  ..        .....+.|+|.|+|+..+-.+++.+|..|| .+..|+|..+     ++|+|||+|-+
T Consensus       605 --K-------~--~~--------~kk~~tKIlVRNipFeAt~rEVr~LF~aFG-qlksvRlPKK~~k~a~rGF~Fv~f~t  664 (725)
T KOG0110|consen  605 --K-------K--KS--------KKKKGTKILVRNIPFEATKREVRKLFTAFG-QLKSVRLPKKIGKGAHRGFGFVDFLT  664 (725)
T ss_pred             --c-------c--cc--------cccccceeeeeccchHHHHHHHHHHHhccc-ceeeeccchhhcchhhccceeeeccC
Confidence              0       0  00        001356799999999999999999999999 9999998753     37899999999


Q ss_pred             HHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        148 IEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       148 ~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +.+|..|+.+|.++.+.| |.|.+.|++..
T Consensus       665 ~~ea~nA~~al~STHlyG-RrLVLEwA~~d  693 (725)
T KOG0110|consen  665 PREAKNAFDALGSTHLYG-RRLVLEWAKSD  693 (725)
T ss_pred             cHHHHHHHHhhcccceec-hhhheehhccc
Confidence            999999999999999999 89999999875

>KOG0124|consensus

Probab=99.86  E-value=3.2e-21  Score=147.56  Aligned_cols=150  Identities=14%  Similarity=0.257  Sum_probs=119.8

Q ss_pred             hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274          2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD   76 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~   76 (184)
                      ..-|.+||+|++|.+.+     .++|||||+|+-+|.|+.|++.|||..+.||.|+|....  +.  |....     ..|
T Consensus       131 R~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs--Nm--pQAQp-----iID  201 (544)
T KOG0124|consen  131 RRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS--NM--PQAQP-----IID  201 (544)
T ss_pred             HhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC--CC--cccch-----HHH
Confidence            45699999999999877     479999999999999999999999999999999997332  11  11000     000


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHH
Q psy17274         77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEA  151 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A  151 (184)
                      .-.        -+.       ..-..|||..+.++++|+||+..|+-|| +|..|.+-+     ..+|||||+|.+..+.
T Consensus       202 ~vq--------eeA-------k~fnRiYVaSvHpDLSe~DiKSVFEAFG-~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~  265 (544)
T KOG0124|consen  202 MVQ--------EEA-------KKFNRIYVASVHPDLSETDIKSVFEAFG-EIVKCQLARAPTGRGHKGYGFIEYNNLQSQ  265 (544)
T ss_pred             HHH--------HHH-------HhhheEEeeecCCCccHHHHHHHHHhhc-ceeeEEeeccCCCCCccceeeEEeccccch
Confidence            000        000       0234699999999999999999999999 999999865     3479999999999999


Q ss_pred             HHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        152 ITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       152 ~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+|+..||=..++| .-|+|.-+-.+
T Consensus       266 ~eAiasMNlFDLGG-QyLRVGk~vTP  290 (544)
T KOG0124|consen  266 SEAIASMNLFDLGG-QYLRVGKCVTP  290 (544)
T ss_pred             HHHhhhcchhhccc-ceEecccccCC
Confidence            99999999999999 59999765444

>KOG1456|consensus

Probab=99.86  E-value=6.3e-20  Score=140.69  Aligned_cols=171  Identities=21%  Similarity=0.318  Sum_probs=132.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec-C-cEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF-G-KQMRVMISKHQAVQLPKEGQPDAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g-~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      ||.+..+.|+|.+|-|+++..-+|+|+|++.+.|++|.+.|||..++ | ++|+|+|++...+.+-+...+    .+||+
T Consensus       139 ly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D----twDyT  214 (494)
T KOG1456|consen  139 LYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD----TWDYT  214 (494)
T ss_pred             hhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc----ccccc
Confidence            68889999999999999988889999999999999999999999997 4 789999998775533211110    01111


Q ss_pred             CCCC-----------CCC-----------------------------CCCCCC-----------CCCCCCCCCCEEEEeC
Q psy17274         79 ASPL-----------HRF-----------------------------KKPGSK-----------NFQNIYPPSPTLHLSN  107 (184)
Q Consensus        79 ~~~~-----------~~~-----------------------------~~~~~~-----------~~~~~~~~~~~l~v~n  107 (184)
                      .+..           .|.                             -.|.++           ....-..++.++-|.+
T Consensus       215 lp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyG  294 (494)
T KOG1456|consen  215 LPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYG  294 (494)
T ss_pred             CCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEe
Confidence            0000           000                             000000           0012233678999999


Q ss_pred             CC-CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        108 IP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       108 lp-~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      |. ..+.-+.|.++|..|| .|++|++++...+.|.|++.+...-++|+..||+..+.| .+|.|.+|+..
T Consensus       295 Ldh~k~N~drlFNl~ClYG-NV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG-~kl~v~~SkQ~  363 (494)
T KOG1456|consen  295 LDHGKMNCDRLFNLFCLYG-NVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFG-GKLNVCVSKQN  363 (494)
T ss_pred             ccccccchhhhhhhhhhcC-ceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCcccc-ceEEEeecccc
Confidence            98 5777889999999999 999999998778999999999999999999999999999 79999999976

>KOG0147|consensus

Probab=99.82  E-value=2.8e-20  Score=148.61  Aligned_cols=153  Identities=21%  Similarity=0.339  Sum_probs=122.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |+++|+..|.|.+|+++.     .++|.|||+|.+.++...|| .|.|..+.|.+|.|..+........           
T Consensus       196 L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a-----------  263 (549)
T KOG0147|consen  196 LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAA-----------  263 (549)
T ss_pred             HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHH-----------
Confidence            689999999999999887     47899999999999999999 9999999999999986542211100           


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                        ..++.-   .+     .....|-..|||+||..++++++|+.+|++|| .|+.|.+..+     .+|+|||+|.+.++
T Consensus       264 --~~s~a~---~~-----k~~~~p~~rl~vgnLHfNite~~lr~ifepfg-~Ie~v~l~~d~~tG~skgfGfi~f~~~~~  332 (549)
T KOG0147|consen  264 --NASPAL---QG-----KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG-KIENVQLTKDSETGRSKGFGFITFVNKED  332 (549)
T ss_pred             --hccccc---cc-----cccccchhhhhhcccccCchHHHHhhhccCcc-cceeeeeccccccccccCcceEEEecHHH
Confidence              000000   00     00011333399999999999999999999999 9999988764     37999999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      |.+|+..|||..+-| +.|+|+.....
T Consensus       333 ar~a~e~lngfelAG-r~ikV~~v~~r  358 (549)
T KOG0147|consen  333 ARKALEQLNGFELAG-RLIKVSVVTER  358 (549)
T ss_pred             HHHHHHHhccceecC-ceEEEEEeeee
Confidence            999999999999999 99999876544

>KOG0123|consensus

Probab=99.82  E-value=1.1e-19  Score=144.05  Aligned_cols=146  Identities=16%  Similarity=0.315  Sum_probs=121.4

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|+.||+|++|+++.   .++|| ||+|++.++|.+|++.|||..+.|++|.|...............         
T Consensus        93 ~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~---------  162 (369)
T KOG0123|consen   93 LYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE---------  162 (369)
T ss_pred             HHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------
Confidence            689999999999999998   47899 99999999999999999999999999999866533322110000         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAIT  153 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~  153 (184)
                         ...               .-..+++.|++...+++.|.+.|+.+| .|.++.++++    .+++|||+|+++++|..
T Consensus       163 ---~~~---------------~~t~v~vk~~~~~~~~~~l~~~f~~~g-~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~  223 (369)
T KOG0123|consen  163 ---YKK---------------RFTNVYVKNLEEDSTDEELKDLFSAYG-SITSVAVMRDSIGKSKGFGFVNFENPEDAKK  223 (369)
T ss_pred             ---hhh---------------hhhhhheeccccccchHHHHHhhcccC-cceEEEEeecCCCCCCCccceeecChhHHHH
Confidence               000               234588999999999999999999999 9999999873    37899999999999999


Q ss_pred             HHHHhcCeecCCCCeEEEEecCc
Q psy17274        154 ALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       154 Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      |+..|||..+++ ..+.|.-+..
T Consensus       224 av~~l~~~~~~~-~~~~V~~aqk  245 (369)
T KOG0123|consen  224 AVETLNGKIFGD-KELYVGRAQK  245 (369)
T ss_pred             HHHhccCCcCCc-cceeeccccc
Confidence            999999999998 6887765543

>KOG0105|consensus

Probab=99.81  E-value=1.7e-18  Score=121.32  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      +-+||.+||.|..|.+-.  ....||||+|+++.+|+.||..-+|..+.|+.|+|++++.....     ....++..+-.
T Consensus        23 ieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s-----~~~~G~y~ggg   97 (241)
T KOG0105|consen   23 IEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSS-----SDRRGSYSGGG   97 (241)
T ss_pred             HHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcc-----cccccccCCCC
Confidence            358999999999998533  35789999999999999999999999999999999998743211     10011110000


Q ss_pred             C---CCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274         79 A---SPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL  155 (184)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai  155 (184)
                      .   ....+...|..       ...-.+.|++||++-+|+||++++.+.| .|+...+.+.  +.+.|+|...|+...|+
T Consensus        98 rgGgg~gg~rgppsr-------rSe~RVvVsGLp~SgSWQDLKDHmReaG-dvCfadv~rD--g~GvV~~~r~eDMkYAv  167 (241)
T KOG0105|consen   98 RGGGGGGGRRGPPSR-------RSEYRVVVSGLPPSGSWQDLKDHMREAG-DVCFADVQRD--GVGVVEYLRKEDMKYAV  167 (241)
T ss_pred             CCCCCCCcccCCccc-------ccceeEEEecCCCCCchHHHHHHHHhhC-Ceeeeeeecc--cceeeeeeehhhHHHHH
Confidence            0   00000001110       0234689999999999999999999999 9998888743  59999999999999999


Q ss_pred             HHhcCeecCC
Q psy17274        156 IQMHNHQLSE  165 (184)
Q Consensus       156 ~~lng~~i~g  165 (184)
                      ..|+.+.+..
T Consensus       168 r~ld~~~~~s  177 (241)
T KOG0105|consen  168 RKLDDQKFRS  177 (241)
T ss_pred             HhhccccccC
Confidence            9999987754

>KOG0146|consensus

Probab=99.79  E-value=1.9e-19  Score=132.78  Aligned_cols=77  Identities=19%  Similarity=0.356  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .++.|||..||....+.||.++|-+|| .|.+.+|+-     .+|.+|||.|+++.+|..||..|||.+|+= ++|+|.+
T Consensus       284 eGCNlFIYHLPQEFgDaEliQmF~PFG-hivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM-KRLKVQL  361 (371)
T KOG0146|consen  284 EGCNLFIYHLPQEFGDAELIQMFLPFG-HIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM-KRLKVQL  361 (371)
T ss_pred             CcceEEEEeCchhhccHHHHHHhcccc-ceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh-hhhhhhh
Confidence            568899999999999999999999999 999998875     247899999999999999999999999999 9999998


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      .+++
T Consensus       362 KRPk  365 (371)
T KOG0146|consen  362 KRPK  365 (371)
T ss_pred             cCcc
Confidence            7765

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.79  E-value=2.3e-17  Score=137.10  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             CCCEEEEeCCC--CCCC---HHHHHHHHHhcCCceeEEEEccCCC---------ceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274         99 PSPTLHLSNIP--ASVT---EDELKEAFTEKGFTVKGFKFFPKDR---------KMALLQLDSIEEAITALIQMHNHQLS  164 (184)
Q Consensus        99 ~~~~l~v~nlp--~~~t---~~~l~~~F~~~G~~v~~v~v~~~~~---------~~afV~f~~~~~A~~Ai~~lng~~i~  164 (184)
                      ++++|.+.|+=  ..+.   ++|+++.|++|| .|.+|.|.....         +..||+|.+.++|.+|+..|||+.++
T Consensus       513 ~S~vVvL~NMv~~~eldedl~eDV~eEC~K~G-~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~  591 (612)
T TIGR01645       513 RSNVIVLRNMVTPQDIDEFLEGEIREECGKFG-VVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFG  591 (612)
T ss_pred             CCCEEEEeCCCChHHhHHHHHHHHHHHhhcCc-eeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeEC
Confidence            57899999983  2332   467888899999 999998886322         23699999999999999999999999


Q ss_pred             CCCeEEEEec
Q psy17274        165 EQSHLRVSFS  174 (184)
Q Consensus       165 g~~~l~v~~~  174 (184)
                      | |.|+..|=
T Consensus       592 G-R~V~a~~y  600 (612)
T TIGR01645       592 G-RTVVAEAY  600 (612)
T ss_pred             C-eEEEEEEc
Confidence            9 89999874

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0144|consensus

Probab=99.78  E-value=5.2e-19  Score=137.81  Aligned_cols=78  Identities=18%  Similarity=0.353  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+..|||.+||-+.-+.+|-..|.+|| .|.+.+++-+     ++.++||.|++..+|..||..|||.+|++ ++|+|..
T Consensus       423 eGanlfiyhlPqefgdq~l~~~f~pfG-~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~-KrlkVQl  500 (510)
T KOG0144|consen  423 EGANLFIYHLPQEFGDQDLIATFQPFG-GVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGS-KRLKVQL  500 (510)
T ss_pred             CccceeeeeCchhhhhHHHHHHhcccc-ceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcc-ccceEEe
Confidence            456799999999999999999999999 8988888753     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+-
T Consensus       501 k~~~~  505 (510)
T KOG0144|consen  501 KRDRN  505 (510)
T ss_pred             eeccC
Confidence            87653

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.78  E-value=2.8e-18  Score=119.61  Aligned_cols=78  Identities=21%  Similarity=0.345  Sum_probs=71.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+++|||+|||..+||++|+++|++|| .|.++++..+     .+++|||+|++.++|..|++.|||..|.| +.|+|++
T Consensus        33 ~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-r~l~V~~  110 (144)
T PLN03134         33 MSTKLFIGGLSWGTDDASLRDAFAHFG-DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-RHIRVNP  110 (144)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEe
Confidence            567899999999999999999999999 9999998752     47999999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus       111 a~~~~  115 (144)
T PLN03134        111 ANDRP  115 (144)
T ss_pred             CCcCC
Confidence            97654

>KOG0147|consensus

Probab=99.76  E-value=2.1e-17  Score=132.33  Aligned_cols=175  Identities=15%  Similarity=0.192  Sum_probs=122.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC------CCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL------PKEGQP   69 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~------~~~~~~   69 (184)
                      |..+|++||.|..|.++.     ..+||+||+|.+.++|.+|++.|||+++.|+.|+|..-.......      ......
T Consensus       295 lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~  374 (549)
T KOG0147|consen  295 LRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDED  374 (549)
T ss_pred             HhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchh
Confidence            346899999999999887     368999999999999999999999999999999987643221100      000000


Q ss_pred             C-CCc-------ccc------cCC-----------------------CCCCCCCCCCCC-CCCCCCCCCCEEEEeCCCC-
Q psy17274         70 D-AGL-------TKD------YTA-----------------------SPLHRFKKPGSK-NFQNIYPPSPTLHLSNIPA-  110 (184)
Q Consensus        70 ~-~~~-------~~~------~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~~l~v~nlp~-  110 (184)
                      + .+.       ...      ...                       ....+...+... .......|+.++.+.|+-. 
T Consensus       375 d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdp  454 (549)
T KOG0147|consen  375 DRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDP  454 (549)
T ss_pred             hccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCc
Confidence            0 000       000      000                       000000000000 0111225788999999843 


Q ss_pred             -CCC--------HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        111 -SVT--------EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       111 -~~t--------~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                       +.|        .+|+.+-|++|| .|..|.|.+++.|+.||.|.+.+.|..|+..|||.++.| +.|...|-...
T Consensus       455 stete~n~d~eI~edV~Eec~k~g-~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~g-r~Ita~~~~~~  528 (549)
T KOG0147|consen  455 STETEPNWDQEIREDVIEECGKHG-KVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAG-RMITAKYLPLE  528 (549)
T ss_pred             ccccCcchhhHHHHHHHHHHHhcC-CeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhcc-ceeEEEEeehh
Confidence             223        578889999999 999999988777999999999999999999999999999 99999986543

>KOG0110|consensus

Probab=99.75  E-value=2.9e-17  Score=134.81  Aligned_cols=170  Identities=16%  Similarity=0.222  Sum_probs=120.9

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCC-CCCCcccccCCC
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQ-PDAGLTKDYTAS   80 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~-~~~~~~~~~~~~   80 (184)
                      ..+|..||+|.+|. +....-.|+|+|.++.+|..|...|....+...+|.++|+..+....+.... ............
T Consensus       403 t~~F~~fG~i~rvl-lp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~  481 (725)
T KOG0110|consen  403 TEAFLRFGEIGRVL-LPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEEN  481 (725)
T ss_pred             HHHhhcccccceee-cCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccC
Confidence            46899999999994 5444455999999999999999999999999999999998755443211100 000000000000


Q ss_pred             CCCCCC----------CCCCCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--------C
Q psy17274         81 PLHRFK----------KPGSKNF-----QNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--------D  137 (184)
Q Consensus        81 ~~~~~~----------~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--------~  137 (184)
                      +..+..          .+.....     .....+++ ||+.||+...|.++|..+|...| .|..+.|...        +
T Consensus       482 ~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G-~VlS~~I~kkkd~~~k~lS  559 (725)
T KOG0110|consen  482 PSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQG-TVLSIEISKKKDPANKYLS  559 (725)
T ss_pred             cceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcC-eEEEEEEeccccccccccc
Confidence            000000          0000000     01111222 99999999999999999999999 8999987642        1


Q ss_pred             CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        138 RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       138 ~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .|+|||+|.++++|..|+..|+|+.+.| |.|.|.++.
T Consensus       560 mGfgFVEF~~~e~A~~a~k~lqgtvldG-H~l~lk~S~  596 (725)
T KOG0110|consen  560 MGFGFVEFAKPESAQAALKALQGTVLDG-HKLELKISE  596 (725)
T ss_pred             cceeEEEecCHHHHHHHHHHhcCceecC-ceEEEEecc
Confidence            3999999999999999999999999999 999999998

>PF00076 RRM_1: RNA recognition motif

Probab=99.74  E-value=1.4e-17  Score=101.97  Aligned_cols=66  Identities=27%  Similarity=0.550  Sum_probs=61.8

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      |||+|||+++|+++|+++|++|| .|..+.+..+    .+++|||+|++.++|..|++.|||..++| +.|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~-~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFG-KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING-RKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTS-TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhh-hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc-cCcC
Confidence            79999999999999999999999 9999998873    36899999999999999999999999999 7886

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG1457|consensus

Probab=99.72  E-value=1.2e-16  Score=115.13  Aligned_cols=164  Identities=21%  Similarity=0.299  Sum_probs=107.4

Q ss_pred             ChhhhccCCCeeEEEEeeCC------CCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCccccCCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNK------KDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQAVQLPKEGQPDA   71 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~~~~~~~~~~~~~   71 (184)
                      ||+||..|---+...+-..+      +..|||.|.+..+|..|+.+|||..|.   ++.|+|++++..+....+.+....
T Consensus        51 iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP  130 (284)
T KOG1457|consen   51 IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTP  130 (284)
T ss_pred             HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCC
Confidence            57888888666655433322      268999999999999999999999995   799999999866543222111100


Q ss_pred             CcccccC-------------------CC-C--CCC-----------CCC-----------CCCCCC----CC---CCCCC
Q psy17274         72 GLTKDYT-------------------AS-P--LHR-----------FKK-----------PGSKNF----QN---IYPPS  100 (184)
Q Consensus        72 ~~~~~~~-------------------~~-~--~~~-----------~~~-----------~~~~~~----~~---~~~~~  100 (184)
                      ++...+.                   .+ +  ...           +..           |.....    ..   ....+
T Consensus       131 ~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~ac  210 (284)
T KOG1457|consen  131 GSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARAC  210 (284)
T ss_pred             CCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhh
Confidence            0000000                   00 0  000           000           000000    00   00134


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      .+|||.||.++++|++|+.+|+.|. .....+|.. .+-..||++|++.+.|..||..|+|..|-.
T Consensus       211 stlfianl~~~~~ed~l~~~~~~~~-gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~  275 (284)
T KOG1457|consen  211 STLFIANLGPNCTEDELKQLLSRYP-GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSS  275 (284)
T ss_pred             hhHhhhccCCCCCHHHHHHHHHhCC-CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceecc
Confidence            6899999999999999999999997 444444432 235689999999999999999999998854

>PF13893 RRM_5: RNA recognition motif

Probab=99.72  E-value=3.8e-17  Score=96.02  Aligned_cols=56  Identities=21%  Similarity=0.463  Sum_probs=51.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |+++|++||+|.+|.+..+++++|||+|.+.++|+.|++.|||..+.|++|+|+||
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            68999999999999998766799999999999999999999999999999999986

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.68  E-value=2.9e-16  Score=123.95  Aligned_cols=78  Identities=17%  Similarity=0.347  Sum_probs=71.6

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ...++|||.|||+++|+++|+++|+.|| .|+.|+|+.+     ++++|||+|.+.++|.+|++.|||..+.+ ++|+|+
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G-~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-r~i~V~  182 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIG-PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN-KRLKVS  182 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC-ceeeee
Confidence            3578999999999999999999999999 8999998753     36899999999999999999999999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |++..
T Consensus       183 ~a~p~  187 (346)
T TIGR01659       183 YARPG  187 (346)
T ss_pred             ccccc
Confidence            98764

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0148|consensus

Probab=99.68  E-value=1.3e-16  Score=118.01  Aligned_cols=80  Identities=19%  Similarity=0.373  Sum_probs=73.7

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      -.++|+.|.+.++.++|++-|.+|| +|..++|++     ++||+|||.|-..++|+.||..|||.+|++ |.||-.|+.
T Consensus        63 fhvfvgdls~eI~~e~lr~aF~pFG-evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-R~IRTNWAT  140 (321)
T KOG0148|consen   63 FHVFVGDLSPEIDNEKLREAFAPFG-EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-RTIRTNWAT  140 (321)
T ss_pred             eeEEehhcchhcchHHHHHHhcccc-ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc-ceeeccccc
Confidence            3588999999999999999999999 999999997     468999999999999999999999999999 999999998


Q ss_pred             ccccccc
Q psy17274        176 SNIQDIR  182 (184)
Q Consensus       176 ~~~~~~~  182 (184)
                      +.+.+.|
T Consensus       141 RKp~e~n  147 (321)
T KOG0148|consen  141 RKPSEMN  147 (321)
T ss_pred             cCccccC
Confidence            8875544

>KOG0106|consensus

Probab=99.67  E-value=1.2e-16  Score=116.51  Aligned_cols=149  Identities=19%  Similarity=0.307  Sum_probs=112.9

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCC
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASP   81 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      -.+|..||.|.+|.+   +.|++||+|.+..+|..|+..|||..|.|-.+.+++++..........   .+   +-. +.
T Consensus        19 E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~---~g---~r~-~~   88 (216)
T KOG0106|consen   19 ERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPR---GG---DRR-SD   88 (216)
T ss_pred             HHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCC---CC---Ccc-ch
Confidence            368999999999986   469999999999999999999999999998899998874332210000   00   000 00


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274         82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~  161 (184)
                      ......|.        .....|.|.|++..+.+++|.+.|+++| .+.....   ..+.|||+|.+.++|..|+..|+|.
T Consensus        89 ~~~~~~p~--------~s~~r~~~~~~~~r~~~qdl~d~~~~~g-~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~  156 (216)
T KOG0106|consen   89 SRRYRPPS--------RTHFRLIVRNLSLRVSWQDLKDHFRPAG-EVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGK  156 (216)
T ss_pred             hhccCCcc--------cccceeeeccchhhhhHHHHhhhhcccC-CCchhhh---hccccceeehhhhhhhhcchhccch
Confidence            00111111        1346688999999999999999999999 7744432   5689999999999999999999999


Q ss_pred             ecCCCCeEEEEe
Q psy17274        162 QLSEQSHLRVSF  173 (184)
Q Consensus       162 ~i~g~~~l~v~~  173 (184)
                      .+.+ +.|++.+
T Consensus       157 ~~~~-~~l~~~~  167 (216)
T KOG0106|consen  157 KLNG-RRISVEK  167 (216)
T ss_pred             hhcC-ceeeecc
Confidence            9999 7999843

>KOG0125|consensus

Probab=99.67  E-value=1.8e-16  Score=119.92  Aligned_cols=76  Identities=18%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      -+.|||+|+|+..-|.||+.+|++|| .|.+|+|+-+   +||+|||+|++++||.+|-+.|||..+.| |+|.|.-+..
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG-~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG-RkIEVn~ATa  173 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFG-KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG-RKIEVNNATA  173 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhC-ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec-eEEEEeccch
Confidence            36799999999999999999999999 9999999854   47999999999999999999999999999 9999998876


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      +
T Consensus       174 r  174 (376)
T KOG0125|consen  174 R  174 (376)
T ss_pred             h
Confidence            6

>KOG0114|consensus

Probab=99.67  E-value=6.1e-16  Score=98.71  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=67.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++.|||.|||..+|.+++.++|.+|| .|..|+|-.  ..+|.|||.|++..+|.+|+.+|+|+.+.+ +.|.|-|-.
T Consensus        18 nriLyirNLp~~ITseemydlFGkyg-~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~-ryl~vlyyq   93 (124)
T KOG0114|consen   18 NRILYIRNLPFKITSEEMYDLFGKYG-TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN-RYLVVLYYQ   93 (124)
T ss_pred             heeEEEecCCccccHHHHHHHhhccc-ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC-ceEEEEecC
Confidence            67899999999999999999999999 899998853  348999999999999999999999999999 899988754

>KOG0107|consensus

Probab=99.66  E-value=3.8e-16  Score=108.67  Aligned_cols=79  Identities=18%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      -.+.|||+||+..+++.||..+|..|| .+..|.|-.+..|+|||+|+++.||..|+..|||..|.| ..|+|.+++-..
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG-~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG-~r~rVE~S~G~~   86 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYG-PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICG-SRIRVELSTGRP   86 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcC-cceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccC-ceEEEEeecCCc
Confidence            356799999999999999999999999 999999887778999999999999999999999999999 699999988664


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        87 r   87 (195)
T KOG0107|consen   87 R   87 (195)
T ss_pred             c
Confidence            4

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.65  E-value=1.4e-15  Score=113.72  Aligned_cols=74  Identities=19%  Similarity=0.339  Sum_probs=68.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .++|||+|||+.+|+++|+++|+.|| .|.+|+|..+  .+++|||+|.++++|..|+. |||..|.| +.|+|..+..
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G-~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g-r~V~Vt~a~~   79 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSG-DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD-QSVTITPAED   79 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC-ceEEEEeccC
Confidence            56899999999999999999999999 9999999764  36999999999999999995 99999999 8999999863

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.64  E-value=1.4e-15  Score=93.30  Aligned_cols=66  Identities=29%  Similarity=0.517  Sum_probs=59.6

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      |+|+|||+++++++|+++|+.+| .|..+.+..+.    +++|||+|.+.++|.+|+..++|..++| +.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g-~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g-~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFG-PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG-RKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSS-BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC-EEcC
Confidence            78999999999999999999999 99999998743    6899999999999999999999999999 7875

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PF13893 RRM_5: RNA recognition motif

Probab=99.63  E-value=2.2e-15  Score=88.48  Aligned_cols=56  Identities=34%  Similarity=0.565  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        117 LKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       117 l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      |+++|++|| .|.++.+.++.++.|||+|.+.++|..|+..|||..++| ++|+|+||
T Consensus         1 L~~~f~~fG-~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g-~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFG-EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNG-RPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS--EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETT-EEEEEEEE
T ss_pred             ChHHhCCcc-cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEC
Confidence            689999999 999999987556999999999999999999999999999 89999996

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0122|consensus

Probab=99.61  E-value=6.2e-15  Score=107.65  Aligned_cols=78  Identities=22%  Similarity=0.392  Sum_probs=72.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ....+|-|.||+.+++|++|++||.+|| .|.++.|..+     .+|+|||.|.+.++|.+||..|||+-++. =.|+|.
T Consensus       187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg-~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~-LILrvE  264 (270)
T KOG0122|consen  187 DDEATVRVTNLSEDMREDDLEELFRPFG-PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN-LILRVE  264 (270)
T ss_pred             CccceeEEecCccccChhHHHHHhhccC-ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce-EEEEEE
Confidence            3567899999999999999999999999 8999988763     37999999999999999999999999999 799999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |++++
T Consensus       265 wskP~  269 (270)
T KOG0122|consen  265 WSKPS  269 (270)
T ss_pred             ecCCC
Confidence            99975

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.60  E-value=1.1e-14  Score=121.10  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCC
Q psy17274         30 ESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIP  109 (184)
Q Consensus        30 ~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp  109 (184)
                      -.++|.+||..++|..+........+.......                    . ...|         ...++|||+|||
T Consensus        18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~--------------------~-~~~p---------~~~~~lFVgnLp   67 (578)
T TIGR01648        18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGW--------------------S-GVQP---------GRGCEVFVGKIP   67 (578)
T ss_pred             ccHHHHHHHHHhhCccccccCCcccCCCCCCcc--------------------c-CCCC---------CCCCEEEeCCCC
Confidence            357899999999998775554444444311110                    0 0001         035789999999


Q ss_pred             CCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecC-CCCeEEEEecC
Q psy17274        110 ASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLS-EQSHLRVSFSK  175 (184)
Q Consensus       110 ~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~-g~~~l~v~~~~  175 (184)
                      .+++|++|+++|++|| .|..++|+.    .++++|||+|.+.++|.+||+.|||..+. | +.|.|..+.
T Consensus        68 ~~~tEd~L~~~F~~~G-~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G-r~l~V~~S~  136 (578)
T TIGR01648        68 RDLYEDELVPLFEKAG-PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG-RLLGVCISV  136 (578)
T ss_pred             CCCCHHHHHHHHHhhC-CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC-ccccccccc
Confidence            9999999999999999 999999875    35799999999999999999999999996 6 788777654

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG4212|consensus

Probab=99.59  E-value=4.2e-14  Score=111.01  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=68.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|+|.|||.++||+.|++-|..|| .|..+.|+.+.+..+.|.|.++++|+.|+..|||..+.| |.|+|.|
T Consensus       535 Ka~qIiirNlP~dfTWqmlrDKfre~G-~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~G-r~I~V~y  607 (608)
T KOG4212|consen  535 KACQIIIRNLPFDFTWQMLRDKFREIG-HVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDG-RNIKVTY  607 (608)
T ss_pred             cccEEEEecCCccccHHHHHHHHHhcc-ceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccC-ceeeeee
Confidence            456799999999999999999999999 999999987677778999999999999999999999999 8999988

>smart00362 RRM_2 RNA recognition motif

Probab=99.58  E-value=1.6e-14  Score=88.03  Aligned_cols=69  Identities=32%  Similarity=0.533  Sum_probs=63.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      +|+|.|||..+++++|+++|++|| .|..+.+....   +++|||+|.+.++|..|+..++|..+.| +.|+|+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g-~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~-~~i~v~   72 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFG-PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG-RPLRVE   72 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcC-CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC-EEEeeC
Confidence            489999999999999999999999 89999887643   5999999999999999999999999999 798873

>KOG0105|consensus

Probab=99.55  E-value=9.7e-15  Score=102.62  Aligned_cols=77  Identities=18%  Similarity=0.392  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .++.|||+|||.++-+.++.++|.+|| .|..|.+...  ...+|||+|+++.+|..||..-+|+.++| +.|+|.|.+.
T Consensus         5 ~~~~iyvGNLP~diRekeieDlFyKyg-~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg-~rLRVEfprg   82 (241)
T KOG0105|consen    5 NSRRIYVGNLPGDIREKEIEDLFYKYG-RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG-CRLRVEFPRG   82 (241)
T ss_pred             ccceEEecCCCcchhhccHHHHHhhhc-ceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc-ceEEEEeccC
Confidence            367899999999999999999999999 9999987532  25799999999999999999999999999 7999999875


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus        83 g   83 (241)
T KOG0105|consen   83 G   83 (241)
T ss_pred             C
Confidence            4

>KOG1548|consensus

Probab=99.55  E-value=1.3e-13  Score=105.33  Aligned_cols=173  Identities=18%  Similarity=0.218  Sum_probs=116.9

Q ss_pred             hhhhccCCCeeE--------EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCC
Q psy17274          2 FSLTGVYGDVLR--------VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEG   67 (184)
Q Consensus         2 ~~lF~~yG~V~~--------v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~   67 (184)
                      .++|++||-|.+        |++.+    .-+|-|++.|-..+++..|++.|++..|.|++|+|+.++.+....  +...
T Consensus       152 ~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k  231 (382)
T KOG1548|consen  152 AEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKK  231 (382)
T ss_pred             HHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccc
Confidence            468999999864        67776    257889999999999999999999999999999999887553211  0000


Q ss_pred             CC-CCCcccccCCCCCCCCC-CCCCCCCCCCCCCCCEEEEeCCCC----CCC-------HHHHHHHHHhcCCceeEEEEc
Q psy17274         68 QP-DAGLTKDYTASPLHRFK-KPGSKNFQNIYPPSPTLHLSNIPA----SVT-------EDELKEAFTEKGFTVKGFKFF  134 (184)
Q Consensus        68 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~nlp~----~~t-------~~~l~~~F~~~G~~v~~v~v~  134 (184)
                      .. .....+.+.......+. .|.. .........++|.+.|+-.    .-+       .++|++-+++|| .|.+|.|.
T Consensus       232 ~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G-~v~~vvv~  309 (382)
T KOG1548|consen  232 EKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFG-QVRKVVVY  309 (382)
T ss_pred             cccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhC-CcceEEEe
Confidence            00 00000000000000000 0000 0000111457888888842    222       566777799999 89999888


Q ss_pred             cCC-CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        135 PKD-RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       135 ~~~-~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+. .|.+.|.|.+.++|..||+.|+|+.++| |.|..+.....
T Consensus       310 d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg-Rql~A~i~DG~  352 (382)
T KOG1548|consen  310 DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG-RQLTASIWDGK  352 (382)
T ss_pred             ccCCCceeEEEeCChHHHHHHHHHhcCeeecc-eEEEEEEeCCc
Confidence            543 5899999999999999999999999999 89988775544

>KOG0124|consensus

Probab=99.54  E-value=3.6e-13  Score=103.76  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=58.8

Q ss_pred             CCCEEEEeCC--CCCCC---HHHHHHHHHhcCCceeEEEEccCCCc---------eEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274         99 PSPTLHLSNI--PASVT---EDELKEAFTEKGFTVKGFKFFPKDRK---------MALLQLDSIEEAITALIQMHNHQLS  164 (184)
Q Consensus        99 ~~~~l~v~nl--p~~~t---~~~l~~~F~~~G~~v~~v~v~~~~~~---------~afV~f~~~~~A~~Ai~~lng~~i~  164 (184)
                      .++++.+.|+  |.+++   +.++.+.|++|| .|.+|.|.....+         .-||+|....++.+|+..|||+.++
T Consensus       445 ~S~VivLRNMV~P~DiDe~LegEi~EECgKfG-~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFg  523 (544)
T KOG0124|consen  445 ESTVIVLRNMVDPKDIDEDLEGEITEECGKFG-AVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFG  523 (544)
T ss_pred             cCcEEEEeccCChhhhhhHHHHHHHHHHhccc-ceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceec
Confidence            5788889997  45665   678899999999 9999988753222         3699999999999999999999999


Q ss_pred             CCCeEEEE
Q psy17274        165 EQSHLRVS  172 (184)
Q Consensus       165 g~~~l~v~  172 (184)
                      | +++...
T Consensus       524 G-r~VvAE  530 (544)
T KOG0124|consen  524 G-RKVVAE  530 (544)
T ss_pred             C-ceeehh
Confidence            9 777543

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.53  E-value=1.2e-13  Score=84.64  Aligned_cols=70  Identities=31%  Similarity=0.578  Sum_probs=64.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +|+|+|||..+++++|+++|+.+| .|..+.+....    +++|+|+|.+.++|..|+..+++..+.| +.++|.|
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g-~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-~~~~v~~   74 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFG-KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG-RPLRVEF   74 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcC-CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEeC
Confidence            489999999999999999999999 99999888643    6899999999999999999999999999 8999875

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>PLN03213 repressor of silencing 3; Provisional

Probab=99.53  E-value=4.5e-14  Score=112.43  Aligned_cols=77  Identities=22%  Similarity=0.345  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCH--HHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSI--EEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~--~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .+-.|||+||++++++++|+.+|++|| .|.+|.|++ ..||||||+|.+.  .++.+||..|||..+.| +.|+|.-++
T Consensus         9 ~gMRIYVGNLSydVTEDDLravFSeFG-sVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG-R~LKVNKAK   86 (759)
T PLN03213          9 GGVRLHVGGLGESVGRDDLLKIFSPMG-TVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG-GRLRLEKAK   86 (759)
T ss_pred             cceEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC-ceeEEeecc
Confidence            356799999999999999999999999 999999986 2489999999987  78999999999999999 899999887


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      +.
T Consensus        87 P~   88 (759)
T PLN03213         87 EH   88 (759)
T ss_pred             HH
Confidence            64

>KOG4205|consensus

Probab=99.53  E-value=3.3e-14  Score=109.78  Aligned_cols=144  Identities=12%  Similarity=0.224  Sum_probs=112.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.+-|++||+|.++.+|+     +++|++||+|++++....++. ..-..+.|+.|.++.+.......            
T Consensus        23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~------------   89 (311)
T KOG4205|consen   23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQT------------   89 (311)
T ss_pred             HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccCccccc------------
Confidence            456789999999999998     578999999999999999984 44556888888887554211110            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~  150 (184)
                              +..         ....++.+||++||.+++++++++.|.+|| .|..+.++.     +.++++||.|++.+.
T Consensus        90 --------~~~---------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g-~v~~~~~~~d~~~~~~rgFgfv~~~~e~s  151 (311)
T KOG4205|consen   90 --------KVG---------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFG-KVADVVIMYDKTTSRPRGFGFVTFDSEDS  151 (311)
T ss_pred             --------ccc---------cccceeEEEecCcCCCCchHHHhhhhhccc-eeEeeEEeecccccccccceeeEeccccc
Confidence                    000         001467899999999999999999999999 888776654     247999999999887


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ..+++. ...+.+.| +.+.|--+-+.
T Consensus       152 Vdkv~~-~~f~~~~g-k~vevkrA~pk  176 (311)
T KOG4205|consen  152 VDKVTL-QKFHDFNG-KKVEVKRAIPK  176 (311)
T ss_pred             cceecc-cceeeecC-ceeeEeeccch
Confidence            777765 78999999 88888766554

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.52  E-value=1.1e-13  Score=102.15  Aligned_cols=74  Identities=12%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .+.+|+|+||++.+|+++|+++|+.|| .|.+|++.+..  +++|||+|.++++|..|+ .|||..|.+ ++|.|.-..
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G-~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d-~~I~It~~~   79 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCG-AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD-QRVCITRWG   79 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcC-CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC-ceEEEEeCc
Confidence            356899999999999999999999999 99999998743  579999999999999999 599999999 699888643

>KOG0121|consensus

Probab=99.52  E-value=4.7e-14  Score=93.51  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=66.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+.+|||+||...++|+.|.+||+++| .|.+|.+-.     ...|++||+|.+.++|..|+..+||+.+.. ++|++.|
T Consensus        35 ~S~tvyVgNlSfyttEEqiyELFs~cG-~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd-r~ir~D~  112 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTTEEQIYELFSKCG-DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD-RPIRIDW  112 (153)
T ss_pred             hcceEEEeeeeeeecHHHHHHHHHhcc-chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc-cceeeec
Confidence            578999999999999999999999999 898885422     124899999999999999999999999999 8999987


Q ss_pred             c
Q psy17274        174 S  174 (184)
Q Consensus       174 ~  174 (184)
                      -
T Consensus       113 D  113 (153)
T KOG0121|consen  113 D  113 (153)
T ss_pred             c
Confidence            4

>smart00360 RRM RNA recognition motif

Probab=99.49  E-value=1.6e-13  Score=83.26  Aligned_cols=66  Identities=29%  Similarity=0.552  Sum_probs=59.8

Q ss_pred             EeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        105 LSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       105 v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |+|||..+++++|+++|++|| .|..+.+....     +++|||+|.+.++|..|+..|+|..++| +.|+|+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFG-KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG-RPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhC-CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-cEEEeC
Confidence            578999999999999999999 89999887632     5799999999999999999999999999 798874

>KOG4207|consensus

Probab=99.48  E-value=7.8e-14  Score=99.67  Aligned_cols=76  Identities=22%  Similarity=0.352  Sum_probs=69.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      -..|.|-||.+.++.++|+.+|++|| .|-.|.|..     ..+|+|||.|.+..||+.|+++|+|..++| +.|+|+++
T Consensus        13 m~SLkVdNLTyRTspd~LrrvFekYG-~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg-RelrVq~a   90 (256)
T KOG4207|consen   13 MTSLKVDNLTYRTSPDDLRRVFEKYG-RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG-RELRVQMA   90 (256)
T ss_pred             ceeEEecceeccCCHHHHHHHHHHhC-cccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc-ceeeehhh
Confidence            46799999999999999999999999 998887754     347999999999999999999999999999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +..
T Consensus        91 ryg   93 (256)
T KOG4207|consen   91 RYG   93 (256)
T ss_pred             hcC
Confidence            754

>KOG0113|consensus

Probab=99.46  E-value=7e-13  Score=99.53  Aligned_cols=81  Identities=15%  Similarity=0.313  Sum_probs=75.1

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      .|-+||||.-|++.++|.+|+..|+.|| .|.+|.++.     +++|||||+|++..+...|-+.-+|..|+| +.|-|.
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG-~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg-rri~VD  176 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYG-PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG-RRILVD  176 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcC-cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC-cEEEEE
Confidence            4789999999999999999999999999 999999986     358999999999999999999999999999 999999


Q ss_pred             ecCccccc
Q psy17274        173 FSKSNIQD  180 (184)
Q Consensus       173 ~~~~~~~~  180 (184)
                      +-...++.
T Consensus       177 vERgRTvk  184 (335)
T KOG0113|consen  177 VERGRTVK  184 (335)
T ss_pred             eccccccc
Confidence            98877654

>KOG0111|consensus

Probab=99.46  E-value=4.1e-14  Score=102.03  Aligned_cols=79  Identities=25%  Similarity=0.380  Sum_probs=72.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|||++|...++|.-|..-|-+|| .|..|.+..     +.+++|||+|+..|||..||..||+..+.| |.|+|.|
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIPFG-DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G-rtirVN~   86 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIPFG-DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG-RTIRVNL   86 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhcccccc-chhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc-eeEEEee
Confidence            357899999999999999999999999 999998753     458999999999999999999999999999 9999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      +++.-.
T Consensus        87 AkP~ki   92 (298)
T KOG0111|consen   87 AKPEKI   92 (298)
T ss_pred             cCCccc
Confidence            998743

>KOG4206|consensus

Probab=99.44  E-value=4.6e-13  Score=97.10  Aligned_cols=79  Identities=27%  Similarity=0.440  Sum_probs=72.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHH----HHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKE----AFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~----~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |+.||||.||++.+.-++|+.    +|++|| .|..|....  +.+|.|||.|.+.+.|..|+..|+|..+.| +.++|.
T Consensus         8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG-~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg-K~mriq   85 (221)
T KOG4206|consen    8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFG-KILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG-KPMRIQ   85 (221)
T ss_pred             CCceEeehhccccccHHHHHHHHHHHHHhhC-CeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC-chhhee
Confidence            566999999999999999998    999999 998888775  348999999999999999999999999999 999999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |+++...
T Consensus        86 yA~s~sd   92 (221)
T KOG4206|consen   86 YAKSDSD   92 (221)
T ss_pred             cccCccc
Confidence            9998743

>KOG0120|consensus

Probab=99.44  E-value=5.6e-13  Score=107.98  Aligned_cols=159  Identities=14%  Similarity=0.211  Sum_probs=110.3

Q ss_pred             hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      ++.+.||.+....+..     +++||||.+|.++.....|+..|||..+.+++|.|..+-......-.... .+..  .+
T Consensus       308 Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-~~~~--~~  384 (500)
T KOG0120|consen  308 ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-ISQS--QV  384 (500)
T ss_pred             HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-cccc--cc
Confidence            4566778877776665     57999999999999999999999999999999999887644332111000 0000  01


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCceeEEEEccC--------CCc
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNI--PASVT--------EDELKEAFTEKGFTVKGFKFFPK--------DRK  139 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~~v~~v~v~~~--------~~~  139 (184)
                      ...+....        .....|+.+|.+.|+  |..+.        -|+++.-|+.|| .|..|.+-..        +-|
T Consensus       385 ~~i~~~~~--------q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g-~v~~v~ipr~~~~~~~~~G~G  455 (500)
T KOG0120|consen  385 PGIPLLMT--------QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG-AVRSVEIPRPYPDENPVPGTG  455 (500)
T ss_pred             ccchhhhc--------ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC-ceeEEecCCCCCCCCcCCCcc
Confidence            10000000        011126777887775  22222        245667799999 8888876542        246


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        140 MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       140 ~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ..||+|.+.+++.+|++.|+|..+.| |++..+|=
T Consensus       456 kVFVefas~ed~qrA~~~L~GrKF~n-RtVvtsYy  489 (500)
T KOG0120|consen  456 KVFVEFADTEDSQRAMEELTGRKFAN-RTVVASYY  489 (500)
T ss_pred             cEEEEecChHHHHHHHHHccCceeCC-cEEEEEec
Confidence            78999999999999999999999999 89998884

>KOG0109|consensus

Probab=99.42  E-value=2.8e-13  Score=101.39  Aligned_cols=71  Identities=25%  Similarity=0.411  Sum_probs=67.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .|||+|||...++.+|+.+|++|| +|..+.|++   ++|||+.++...|..||..|||+.|+| ..|.|.=||++
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~yg-kVlECDIvK---NYgFVHiEdktaaedairNLhgYtLhg-~nInVeaSksK   74 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYG-KVLECDIVK---NYGFVHIEDKTAAEDAIRNLHGYTLHG-VNINVEASKSK   74 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhC-ceEeeeeec---ccceEEeecccccHHHHhhcccceecc-eEEEEEecccc
Confidence            499999999999999999999999 999999985   799999999999999999999999999 89999988876

>KOG0131|consensus

Probab=99.41  E-value=7.1e-13  Score=93.02  Aligned_cols=75  Identities=23%  Similarity=0.286  Sum_probs=68.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ...+|||+||++.++++-|+++|-+.| +|.++.+.+     ..+|+|||+|.+.|+|..|++.||...+.| |+|+|.-
T Consensus         8 qd~tiyvgnld~kvs~~~l~EL~iqag-pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg-rpIrv~k   85 (203)
T KOG0131|consen    8 QDATLYVGNLDEKVSEELLYELFIQAG-PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG-RPIRVNK   85 (203)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHhcC-ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC-ceeEEEe
Confidence            467899999999999999999999999 898998754     247999999999999999999999999999 9999997


Q ss_pred             cC
Q psy17274        174 SK  175 (184)
Q Consensus       174 ~~  175 (184)
                      +.
T Consensus        86 as   87 (203)
T KOG0131|consen   86 AS   87 (203)
T ss_pred             cc
Confidence            76

>KOG0107|consensus

Probab=99.40  E-value=3.5e-13  Score=93.97  Aligned_cols=61  Identities=20%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |-.+|+.||++.+|+|-.+.+|||||+|+++.+|+.|+..|||..+.|..|+|++++....
T Consensus        27 LE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r   87 (195)
T KOG0107|consen   27 LERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR   87 (195)
T ss_pred             HHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence            3468999999999999999999999999999999999999999999999999999875543

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.40  E-value=1.1e-12  Score=91.56  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|+.|++.|||..+.|++|+|+++...
T Consensus        51 L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR  114 (144)
T ss_pred             HHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence            578999999999999886     35899999999999999999999999999999999998743

>KOG0130|consensus

Probab=99.40  E-value=9e-13  Score=88.22  Aligned_cols=74  Identities=16%  Similarity=0.361  Sum_probs=67.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+.+|+|.++.+..+|+++.+.|..|| +|.++.+...     .+|||+|+|++.++|+.|+..|||..+-| ..|.|.|
T Consensus        71 EGwIi~VtgvHeEatEedi~d~F~dyG-eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~-q~v~VDw  148 (170)
T KOG0130|consen   71 EGWIIFVTGVHEEATEEDIHDKFADYG-EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG-QNVSVDW  148 (170)
T ss_pred             eeEEEEEeccCcchhHHHHHHHHhhcc-cccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC-CceeEEE
Confidence            467899999999999999999999999 9999988642     27999999999999999999999999999 5888877


Q ss_pred             c
Q psy17274        174 S  174 (184)
Q Consensus       174 ~  174 (184)
                      .
T Consensus       149 ~  149 (170)
T KOG0130|consen  149 C  149 (170)
T ss_pred             E
Confidence            5

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.38  E-value=3.1e-12  Score=97.36  Aligned_cols=74  Identities=31%  Similarity=0.509  Sum_probs=68.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ..+|||+|||..+++++|+++|.+|| .|..+.+..+     .+|+|||+|.+.++|..|+..|+|..+.| +.|+|.++
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g-~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-~~~~v~~~  192 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFG-PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG-RPLRVQKA  192 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcC-ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC-ceeEeecc
Confidence            58999999999999999999999999 8888887642     37999999999999999999999999999 89999996


Q ss_pred             C
Q psy17274        175 K  175 (184)
Q Consensus       175 ~  175 (184)
                      .
T Consensus       193 ~  193 (306)
T COG0724         193 Q  193 (306)
T ss_pred             c
Confidence            4

>KOG0117|consensus

Probab=99.38  E-value=1.5e-11  Score=96.94  Aligned_cols=78  Identities=26%  Similarity=0.371  Sum_probs=70.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .++.|||+.||.++.|++|..+|++.| +|-.++++.+     +||+|||.|-+.++|++|++.||++.|...+.|.|+.
T Consensus        82 ~G~EVfvGkIPrD~~EdeLvplfEkiG-~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~  160 (506)
T KOG0117|consen   82 RGCEVFVGKIPRDVFEDELVPLFEKIG-KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV  160 (506)
T ss_pred             CCceEEecCCCccccchhhHHHHHhcc-ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence            577899999999999999999999999 9999999853     5899999999999999999999999996448999998


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      |-..
T Consensus       161 Svan  164 (506)
T KOG0117|consen  161 SVAN  164 (506)
T ss_pred             eeec
Confidence            7654

>KOG0132|consensus

Probab=99.34  E-value=3.2e-12  Score=106.47  Aligned_cols=77  Identities=25%  Similarity=0.443  Sum_probs=72.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      -++||||+.|+..+++.||.++|+.|| .|.+|.++. .+++|||.|....+|.+|+.+|+++.+.+ +.|+|.|+...-
T Consensus       420 ~SrTLwvG~i~k~v~e~dL~~~feefG-eiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~-k~Iki~Wa~g~G  496 (894)
T KOG0132|consen  420 CSRTLWVGGIPKNVTEQDLANLFEEFG-EIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVAD-KTIKIAWAVGKG  496 (894)
T ss_pred             eeeeeeeccccchhhHHHHHHHHHhcc-cceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccc-eeeEEeeeccCC
Confidence            478999999999999999999999999 999999885 89999999999999999999999999999 899999997763

>KOG4211|consensus

Probab=99.32  E-value=3.9e-11  Score=95.65  Aligned_cols=146  Identities=18%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |.++|+.+ .|+++.+.+   +..|-|||+|.+.|++++|++ .+-..+.-+=|.|.-+.........            
T Consensus        27 i~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~------------   92 (510)
T KOG4211|consen   27 ILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVM------------   92 (510)
T ss_pred             HHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccc------------
Confidence            35778887 578877766   367999999999999999994 5666666677888766533322100            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAI  152 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~  152 (184)
                            +...|.+.      .+..+|-+.+||.+||++||.+.|+..- .|....+++     +..+.|||+|++.+.|+
T Consensus        93 ------~~~g~~s~------~~d~vVRLRGLPfscte~dI~~FFaGL~-Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae  159 (510)
T KOG4211|consen   93 ------RPGGPNSS------ANDGVVRLRGLPFSCTEEDIVEFFAGLE-IVPDGILLPMDQRGRPTGEAFVQFESQESAE  159 (510)
T ss_pred             ------cCCCCCCC------CCCceEEecCCCccCcHHHHHHHhcCCc-ccccceeeeccCCCCcccceEEEecCHHHHH
Confidence                  00011110      1456899999999999999999999887 444322222     23589999999999999


Q ss_pred             HHHHHhcCeecCCCCeEEEEecC
Q psy17274        153 TALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       153 ~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +|+. -|...|+. |-|.|--|.
T Consensus       160 ~Al~-rhre~iGh-RYIEvF~Ss  180 (510)
T KOG4211|consen  160 IALG-RHRENIGH-RYIEVFRSS  180 (510)
T ss_pred             HHHH-HHHHhhcc-ceEEeehhH
Confidence            9988 47777887 788876443

>KOG0108|consensus

Probab=99.32  E-value=5e-12  Score=101.76  Aligned_cols=75  Identities=20%  Similarity=0.402  Sum_probs=69.8

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ..+||+|+|+++++++|.++|+..| .|.++++.-+     .+|+||++|.+.++|..|+..|||..++| |+|+|.|+.
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g-~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-r~l~v~~~~   96 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVG-PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG-RKLRVNYAS   96 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccC-ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC-ceEEeeccc
Confidence            7899999999999999999999999 8999988752     37999999999999999999999999999 899999987


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ..
T Consensus        97 ~~   98 (435)
T KOG0108|consen   97 NR   98 (435)
T ss_pred             cc
Confidence            65

>smart00361 RRM_1 RNA recognition motif

Probab=99.32  E-value=8.3e-12  Score=76.52  Aligned_cols=57  Identities=12%  Similarity=0.372  Sum_probs=48.8

Q ss_pred             HHHHHHHHH----hcCCceeEEE--Ecc------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        114 EDELKEAFT----EKGFTVKGFK--FFP------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       114 ~~~l~~~F~----~~G~~v~~v~--v~~------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      +++|+++|+    +|| .|.++.  +++      .++|+|||+|.+.++|.+|+..|||..+.| +.|+++
T Consensus         2 ~~~l~~~~~~~~~~fG-~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-r~l~~~   70 (70)
T smart00361        2 DEDFEREFSEEEEYFG-EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG-RTVKAE   70 (70)
T ss_pred             chhHHHHHHHHHHhcC-CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEeC
Confidence            578888888    999 898884  332      237999999999999999999999999999 899863

>KOG0126|consensus

Probab=99.31  E-value=1.5e-13  Score=96.43  Aligned_cols=77  Identities=18%  Similarity=0.352  Sum_probs=69.8

Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      +..+.-|||+|||+.+||.||.-+|++|| +|..|.+++     +++|+||..|++-.+..-|+..|||..|.| |.|+|
T Consensus        32 YkdsA~Iyiggl~~~LtEgDil~VFSqyG-e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g-RtirV  109 (219)
T KOG0126|consen   32 YKDSAYIYIGGLPYELTEGDILCVFSQYG-EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG-RTIRV  109 (219)
T ss_pred             cccceEEEECCCcccccCCcEEEEeeccC-ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc-eeEEe
Confidence            33566799999999999999999999999 999999987     347999999999999999999999999999 99999


Q ss_pred             EecC
Q psy17274        172 SFSK  175 (184)
Q Consensus       172 ~~~~  175 (184)
                      ....
T Consensus       110 DHv~  113 (219)
T KOG0126|consen  110 DHVS  113 (219)
T ss_pred             eecc
Confidence            7543

>smart00361 RRM_1 RNA recognition motif

Probab=99.29  E-value=1.1e-11  Score=76.02  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=46.2

Q ss_pred             Chhhhc----cCCCeeEEE-Eee-------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274          1 MFSLTG----VYGDVLRVK-ILY-------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV   53 (184)
Q Consensus         1 L~~lF~----~yG~V~~v~-~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v   53 (184)
                      |.++|+    +||.|.+|. +..       .++|+|||+|.+.++|.+|++.|||..+.|++|.+
T Consensus         5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            466777    999999995 332       25899999999999999999999999999999976

>KOG0125|consensus

Probab=99.28  E-value=5.6e-12  Score=95.88  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |..+|.+||+|.+|.|+-   .+|||+||+|++++||++|-+.|+|..+.||+|+|..+.
T Consensus       113 L~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT  172 (376)
T KOG0125|consen  113 LRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT  172 (376)
T ss_pred             HHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence            568999999999999987   489999999999999999999999999999999998765

>PF00076 RRM_1: RNA recognition motif

Probab=99.27  E-value=7.9e-12  Score=76.19  Aligned_cols=52  Identities=17%  Similarity=0.425  Sum_probs=48.0

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMR   52 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   52 (184)
                      |.++|++||.|..++++.+    .+++|||+|.+.++|+.|++.|||..+.|++|+
T Consensus        15 l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen   15 LRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             HHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             HHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            4689999999999999883    689999999999999999999999999999885

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0149|consensus

Probab=99.27  E-value=1.3e-11  Score=89.95  Aligned_cols=73  Identities=10%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.|||+||+..+..++|++.|++|| +|+.+.|+-     ++||+|||+|.+.+.|.+|++.. +-.|+| |+--|.++.
T Consensus        13 TKifVggL~w~T~~~~l~~yFeqfG-eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG-R~aNcnlA~   89 (247)
T KOG0149|consen   13 TKIFVGGLAWETHKETLRRYFEQFG-EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG-RKANCNLAS   89 (247)
T ss_pred             EEEEEcCcccccchHHHHHHHHHhC-ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc-cccccchhh
Confidence            4699999999999999999999999 998888875     45899999999999999999854 456788 777666654


Q ss_pred             c
Q psy17274        176 S  176 (184)
Q Consensus       176 ~  176 (184)
                      .
T Consensus        90 l   90 (247)
T KOG0149|consen   90 L   90 (247)
T ss_pred             h
Confidence            3

>KOG4212|consensus

Probab=99.26  E-value=6.4e-10  Score=87.82  Aligned_cols=170  Identities=19%  Similarity=0.346  Sum_probs=114.7

Q ss_pred             hhh-ccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc----CCCCCCC----
Q psy17274          3 SLT-GVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ----LPKEGQP----   69 (184)
Q Consensus         3 ~lF-~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~----~~~~~~~----   69 (184)
                      +|| ++-|+|+-|.++.    +.+|+|.|+|.++|.+++|++.||..++.||+|.|+-.+.....    .-+.+..    
T Consensus        63 dLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~  142 (608)
T KOG4212|consen   63 DLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGG  142 (608)
T ss_pred             HHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCccccc
Confidence            444 3578888888776    57999999999999999999999999999999999865432211    0000000    


Q ss_pred             ------------C---------C-CcccccCC-CC---CCCCCCC--C-------------CCCCCCCCCC-CCEEEEeC
Q psy17274         70 ------------D---------A-GLTKDYTA-SP---LHRFKKP--G-------------SKNFQNIYPP-SPTLHLSN  107 (184)
Q Consensus        70 ------------~---------~-~~~~~~~~-~~---~~~~~~~--~-------------~~~~~~~~~~-~~~l~v~n  107 (184)
                                  .         . ...+|... +.   ...+...  .             ........|| ...+||.|
T Consensus       143 ~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvan  222 (608)
T KOG4212|consen  143 GGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVAN  222 (608)
T ss_pred             CcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeec
Confidence                        0         0 00000000 00   0000000  0             0011122333 46789999


Q ss_pred             CCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        108 IPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       108 lp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      |.+.+....|++.|.-.| .|+.|.+--    ++++++.++|..+-+|..||..|++.-+.. ++..+.+.
T Consensus       223 l~~~vg~~kL~qvfgmAG-kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~-~~~~~Rl~  291 (608)
T KOG4212|consen  223 LDYKVGNKKLKQVFGMAG-KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD-RRMTVRLD  291 (608)
T ss_pred             cccccchHHHHHHhccce-eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc-ccceeecc
Confidence            999999999999999999 898887643    357999999999999999999999866666 66666553

>KOG0153|consensus

Probab=99.26  E-value=2.6e-11  Score=92.87  Aligned_cols=74  Identities=16%  Similarity=0.369  Sum_probs=66.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~~~~  176 (184)
                      .++|||++|-+.++|.+|+++|.+|| +|..+.+.+ .++.|||+|.+.+.|+.|.... |...|+| ++|+|.|+++
T Consensus       228 I~tLyIg~l~d~v~e~dIrdhFyqyG-eirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G-~Rl~i~Wg~~  302 (377)
T KOG0153|consen  228 IKTLYIGGLNDEVLEQDIRDHFYQYG-EIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVING-FRLKIKWGRP  302 (377)
T ss_pred             eeEEEecccccchhHHHHHHHHhhcC-CeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecc-eEEEEEeCCC
Confidence            47899999999999999999999999 999999986 7789999999999999977654 5557799 7999999998

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.21  E-value=1.8e-10  Score=87.65  Aligned_cols=153  Identities=18%  Similarity=0.310  Sum_probs=100.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |+++|.+||.|.+|.+..     ..+|+|||+|.+.++|..|++.++|..|.|++|.|.+...  ...++....  ..  
T Consensus       132 l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~--~~--  205 (306)
T COG0724         132 LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP--ASQPRSELS--NN--  205 (306)
T ss_pred             HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc--ccccccccc--cc--
Confidence            578999999999998876     3689999999999999999999999999999999998753  000000000  00  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~  150 (184)
                       ....    ..................+++.|++...+..++...|..+| .+....+....     ....++.+.....
T Consensus       206 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (306)
T COG0724         206 -LDAS----FAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG-DIVRASLPPSKDGKIPKSRSFVGNEASKD  279 (306)
T ss_pred             -cchh----hhccccccccccccccceeeccccccccchhHHHHhccccc-cceeeeccCCCCCcccccccccchhHHHh
Confidence             0000    00000001111222567799999999999999999999999 77666554322     1233355555555


Q ss_pred             HHHHHHHhcCeecCC
Q psy17274        151 AITALIQMHNHQLSE  165 (184)
Q Consensus       151 A~~Ai~~lng~~i~g  165 (184)
                      +..+.....+....+
T Consensus       280 ~~~~~~~~~~~~~~~  294 (306)
T COG0724         280 ALESNSRGNKKKILG  294 (306)
T ss_pred             hhhhhccccceeecc
Confidence            555555544444444

>KOG4207|consensus

Probab=99.21  E-value=7.9e-12  Score=89.50  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |..+|++||.|-+|-|.+     .++|||||.|-+..+|+.|++.|+|..+.|+.|.|++++....
T Consensus        30 LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~   95 (256)
T KOG4207|consen   30 LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRP   95 (256)
T ss_pred             HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCC
Confidence            567999999999999887     4799999999999999999999999999999999999876544

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=99.21  E-value=1.5e-10  Score=71.42  Aligned_cols=70  Identities=26%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             EEEEeCCCCCCCHH----HHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        102 TLHLSNIPASVTED----ELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       102 ~l~v~nlp~~~t~~----~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .|+|.|||...+..    -|++|+..+|+.|..|     ..+.|+|.|.+.+.|.+|.+.|+|..+.| .+|.|+|.+.+
T Consensus         4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG-~kI~v~~~~~~   77 (90)
T PF11608_consen    4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFG-NKISVSFSPKN   77 (90)
T ss_dssp             EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSS-S--EEESS--S
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhccccccc-ceEEEEEcCCc
Confidence            58999999988854    4667888999888776     35899999999999999999999999999 79999998544

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0415|consensus

Probab=99.19  E-value=5.5e-11  Score=91.47  Aligned_cols=80  Identities=20%  Similarity=0.447  Sum_probs=73.3

Q ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCC-----ceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274         95 NIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR-----KMALLQLDSIEEAITALIQMHNHQLSEQSHL  169 (184)
Q Consensus        95 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~-----~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l  169 (184)
                      ...||.++|||--|.+-+|++||.-+|+.|| .|.++.|++..+     .+|||+|++.+++.+|.-.|++..|.. +.|
T Consensus       234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG-~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD-rRI  311 (479)
T KOG0415|consen  234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFG-KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD-RRI  311 (479)
T ss_pred             ccCCCcceEEEEecCCcccccchhhHHhhcc-cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc-ceE
Confidence            4557999999999999999999999999999 999999997432     599999999999999999999999999 899


Q ss_pred             EEEecCc
Q psy17274        170 RVSFSKS  176 (184)
Q Consensus       170 ~v~~~~~  176 (184)
                      +|.||.+
T Consensus       312 HVDFSQS  318 (479)
T KOG0415|consen  312 HVDFSQS  318 (479)
T ss_pred             Eeehhhh
Confidence            9999864

>KOG4661|consensus

Probab=99.17  E-value=2.5e-10  Score=92.81  Aligned_cols=78  Identities=21%  Similarity=0.341  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .++.|||++|...+-..||++||++|| +|...+|+.+-     +.||||+|.+..+|.+||..||-+.+.| +.|.|.-
T Consensus       404 ~gRNlWVSGLSstTRAtDLKnlFSKyG-KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG-rmISVEk  481 (940)
T KOG4661|consen  404 LGRNLWVSGLSSTTRATDLKNLFSKYG-KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG-RMISVEK  481 (940)
T ss_pred             cccceeeeccccchhhhHHHHHHHHhc-ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc-eeeeeee
Confidence            467899999999999999999999999 99999988532     6799999999999999999999999999 8999998


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++..+
T Consensus       482 aKNEp  486 (940)
T KOG4661|consen  482 AKNEP  486 (940)
T ss_pred             cccCc
Confidence            88654

>KOG0111|consensus

Probab=99.17  E-value=1.9e-11  Score=88.44  Aligned_cols=62  Identities=19%  Similarity=0.440  Sum_probs=56.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ   62 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~   62 (184)
                      |.+-|-+||+|.+|++..     +.+|||||+|...|+|..||+.||+.+++||.|+|.++++..+.
T Consensus        27 LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik   93 (298)
T KOG0111|consen   27 LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK   93 (298)
T ss_pred             HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence            567899999999999875     57999999999999999999999999999999999999876553

>KOG4660|consensus

Probab=99.16  E-value=3.8e-11  Score=97.02  Aligned_cols=73  Identities=21%  Similarity=0.369  Sum_probs=68.0

Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ..++.+|+|.|||.++++++|+.+|+.|| +|..|+..+..++..||+|.|+.+|+.|++.||+..|.| +.|+.
T Consensus        72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yG-eir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~-~~~k~  144 (549)
T KOG4660|consen   72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYG-EIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAG-KRIKR  144 (549)
T ss_pred             cCccceEEEEecCCcCCHHHHHHHHHhhc-chhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhh-hhhcC
Confidence            34788999999999999999999999999 999998888788999999999999999999999999999 78873

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.14  E-value=1.4e-10  Score=86.96  Aligned_cols=57  Identities=11%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             ChhhhccCCCeeEEEEeeC--CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN--KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|+.||+|.+|.+...  .+|+|||+|.++++|..|+ .|||..+.|++|.|.++..
T Consensus        21 LrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120         21 IKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED   79 (260)
T ss_pred             HHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence            5789999999999999873  5799999999999999999 5999999999999998763

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.13  E-value=1.4e-10  Score=70.86  Aligned_cols=52  Identities=17%  Similarity=0.394  Sum_probs=47.5

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMR   52 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   52 (184)
                      |.++|+.||.|..|.+..+    .+|+|||+|.++++|.+|++.++|..+.|++|+
T Consensus        15 l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen   15 LRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             HHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             HHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            4689999999999999885    379999999999999999999999999999875

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG4208|consensus

Probab=99.12  E-value=3.4e-10  Score=81.16  Aligned_cols=78  Identities=24%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ....+++..+|..+.+..+...|.++|+.|.++++.+     +++|||||+|++.+.|.-|-+.||++.+.+ +-|.|.|
T Consensus        48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e-~lL~c~v  126 (214)
T KOG4208|consen   48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME-HLLECHV  126 (214)
T ss_pred             CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh-heeeeEE
Confidence            4557899999999999999999999965788888755     458999999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      -.+.
T Consensus       127 mppe  130 (214)
T KOG4208|consen  127 MPPE  130 (214)
T ss_pred             eCch
Confidence            8765

>KOG0130|consensus

Probab=99.12  E-value=5.6e-11  Score=79.71  Aligned_cols=57  Identities=16%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      +.+.|+.||+|+.|.+-.     -.+|||+|+|++.++|+.|++.|||..+.|++|.|.|+.
T Consensus        89 i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F  150 (170)
T KOG0130|consen   89 IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF  150 (170)
T ss_pred             HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence            367899999999998754     258999999999999999999999999999999999986

>KOG0122|consensus

Probab=99.11  E-value=1.8e-10  Score=84.51  Aligned_cols=59  Identities=20%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.+||.+||.|.+|.+.+     .++|||||.|.+.++|.+||+.|||.-+..--|+|+|++++
T Consensus       206 L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~  269 (270)
T KOG0122|consen  206 LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS  269 (270)
T ss_pred             HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence            568999999999999887     26899999999999999999999999999999999999853

>KOG0114|consensus

Probab=99.09  E-value=2.7e-10  Score=73.05  Aligned_cols=57  Identities=21%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      +|+||.+||.|..|++-.  ..+|.|||.|++..+|.+|++.|+|..+.++-|.|-|..
T Consensus        35 mydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq   93 (124)
T KOG0114|consen   35 MYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ   93 (124)
T ss_pred             HHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence            379999999999999755  468999999999999999999999999999999998865

>smart00360 RRM RNA recognition motif

Probab=99.09  E-value=3.7e-10  Score=68.16  Aligned_cols=54  Identities=17%  Similarity=0.347  Sum_probs=48.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVM   54 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~   54 (184)
                      |.++|++||.|..+.+...     .+|+|||+|.+.++|..|++.|++..+.|++|.|+
T Consensus        13 l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360       13 LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            4678999999999998873     26899999999999999999999999999998873

>KOG0121|consensus

Probab=99.08  E-value=1.6e-10  Score=76.89  Aligned_cols=56  Identities=14%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      ||+||+++|+|.+|. |.      ..-|+|||+|.+.++|..|++.++|+.+..++|++.|..
T Consensus        53 iyELFs~cG~irrii-MGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~  114 (153)
T KOG0121|consen   53 IYELFSKCGDIRRII-MGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA  114 (153)
T ss_pred             HHHHHHhccchheeE-eccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence            589999999999995 44      357999999999999999999999999999999999864

>smart00362 RRM_2 RNA recognition motif

Probab=99.08  E-value=4.4e-10  Score=68.07  Aligned_cols=53  Identities=23%  Similarity=0.363  Sum_probs=48.0

Q ss_pred             ChhhhccCCCeeEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYNK---KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV   53 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v   53 (184)
                      |.++|++||.|..+.+....   +|+|||+|.+.++|+.|++.++|..+.|++|.|
T Consensus        16 l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362       16 LKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             HHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            46789999999999987643   699999999999999999999999999999887

>KOG0120|consensus

Probab=99.08  E-value=6.2e-10  Score=90.56  Aligned_cols=156  Identities=16%  Similarity=0.226  Sum_probs=109.1

Q ss_pred             eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCC
Q psy17274         11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGS   90 (184)
Q Consensus        11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (184)
                      +..+.+- ..+++||++|.+.++|..|+ .+++..+.|+++.+.-....... | .........        ..+. +..
T Consensus       214 ~~s~~~n-~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~-p-~~~~~~~~~--------~~~~-~~~  280 (500)
T KOG0120|consen  214 FVSVQLN-LEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKIRRPHDYQPV-P-GITLSPSQL--------GKVG-LLP  280 (500)
T ss_pred             eeeeeec-ccccceeEEecCCCchhhhh-cccchhhCCCCceecccccccCC-c-cchhhhccc--------cccC-Ccc
Confidence            5555543 36799999999999999999 88999999999888643322111 0 000000000        0000 000


Q ss_pred             CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         91 KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        91 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      .. ....-....++|++||..+++..++++...|| .+....++.     .++++||.+|-++.-...|+..|||.++++
T Consensus       281 ~~-t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg-~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd  358 (500)
T KOG0120|consen  281 AS-TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG-PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD  358 (500)
T ss_pred             cc-cCcccccchhhhccCcCccCHHHHHHHHHhcc-cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC
Confidence            00 00111234599999999999999999999999 776666654     358999999999999999999999999999


Q ss_pred             CCeEEEEecCccccccc
Q psy17274        166 QSHLRVSFSKSNIQDIR  182 (184)
Q Consensus       166 ~~~l~v~~~~~~~~~~~  182 (184)
                       ++|.|..+-......+
T Consensus       359 -~~lvvq~A~~g~~~~~  374 (500)
T KOG0120|consen  359 -KKLVVQRAIVGASNAN  374 (500)
T ss_pred             -ceeEeehhhccchhcc
Confidence             8999998876654443

>PLN03213 repressor of silencing 3; Provisional

Probab=99.02  E-value=6.4e-10  Score=89.15  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCH--HHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAES--HQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~--~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||.|.+|.|++ ..+|||||+|.+.  .++.+||..|||..+.|+.|+|..++..
T Consensus        27 LravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~   88 (759)
T PLN03213         27 LLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH   88 (759)
T ss_pred             HHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence            567999999999999998 4689999999988  7899999999999999999999987643

>PLN03121 nucleic acid binding protein; Provisional

Probab=98.98  E-value=1.3e-09  Score=80.62  Aligned_cols=56  Identities=9%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|+.||+|.+|++.+  ..+++|||+|.++++|+.|+ .|+|..+.+++|.|....
T Consensus        22 LrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~   79 (243)
T PLN03121         22 VYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG   79 (243)
T ss_pred             HHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence            578999999999999987  35689999999999999999 899999999999998654

>KOG1457|consensus

Probab=98.97  E-value=4e-09  Score=76.68  Aligned_cols=80  Identities=24%  Similarity=0.361  Sum_probs=65.6

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE--EEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCC--CeEEE
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGF--KFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQ--SHLRV  171 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v--~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~--~~l~v  171 (184)
                      -+||||.+||.++..-+|..+|..|- .-+..  +...+.    +..||+.|.+.++|..|+..|||..++-.  ..|+|
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~-GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi  112 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFH-GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI  112 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCC-CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence            58999999999999999999999986 33333  333222    36899999999999999999999999743  48999


Q ss_pred             EecCccccc
Q psy17274        172 SFSKSNIQD  180 (184)
Q Consensus       172 ~~~~~~~~~  180 (184)
                      .++|+.+..
T Consensus       113 ElAKSNtK~  121 (284)
T KOG1457|consen  113 ELAKSNTKR  121 (284)
T ss_pred             eehhcCccc
Confidence            999987543

>KOG0126|consensus

Probab=98.97  E-value=1.5e-10  Score=81.44  Aligned_cols=55  Identities=16%  Similarity=0.440  Sum_probs=51.2

Q ss_pred             hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      ..+||+||+|.+|.+++     .++||||..|++..+...|++.|||..+.||.|+|.-.
T Consensus        53 l~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv  112 (219)
T KOG0126|consen   53 LCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV  112 (219)
T ss_pred             EEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence            45899999999999998     48999999999999999999999999999999999853

>KOG0151|consensus

Probab=98.94  E-value=4.7e-09  Score=87.28  Aligned_cols=78  Identities=21%  Similarity=0.335  Sum_probs=70.7

Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      .|.++.|||+||++.++++.|...|..|| +|..++|+=        ..+.+|||-|.+..||..|++.|+|..+.+ +.
T Consensus       171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfg-PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~-~e  248 (877)
T KOG0151|consen  171 DPQTTNLYVGNLNPSVDENFLLRTFGRFG-PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME-YE  248 (877)
T ss_pred             CCcccceeeecCCccccHHHHHHHhcccC-cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-ee
Confidence            45678899999999999999999999999 898998862        236899999999999999999999999999 89


Q ss_pred             EEEEecCc
Q psy17274        169 LRVSFSKS  176 (184)
Q Consensus       169 l~v~~~~~  176 (184)
                      +++.|++.
T Consensus       249 ~K~gWgk~  256 (877)
T KOG0151|consen  249 MKLGWGKA  256 (877)
T ss_pred             eeeccccc
Confidence            99999964

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.93  E-value=4.5e-09  Score=63.86  Aligned_cols=55  Identities=24%  Similarity=0.394  Sum_probs=49.5

Q ss_pred             ChhhhccCCCeeEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYNK----KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI   55 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~   55 (184)
                      |.++|+.||+|.++.+....    .|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus        16 i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590          16 LRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             HHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence            45789999999999988743    79999999999999999999999999999998864

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0533|consensus

Probab=98.92  E-value=7.8e-09  Score=77.30  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=68.0

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ...|.|.|||+.++++||+++|..|| .+..+-+..+    +.|.|-|.|...+||..|++.+||..++| +.|++....
T Consensus        83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG-~~mk~~~i~  160 (243)
T KOG0533|consen   83 STKVNVSNLPYGVIDADLKELFAEFG-ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG-RPMKIEIIS  160 (243)
T ss_pred             cceeeeecCCcCcchHHHHHHHHHhc-cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC-ceeeeEEec
Confidence            46799999999999999999999999 8888877653    35899999999999999999999999999 899998776


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ++
T Consensus       161 ~~  162 (243)
T KOG0533|consen  161 SP  162 (243)
T ss_pred             Cc
Confidence            65

>KOG4660|consensus

Probab=98.91  E-value=7.5e-10  Score=89.67  Aligned_cols=158  Identities=14%  Similarity=0.213  Sum_probs=105.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |..+|+.||+|..|+....+.|.+||+|-|..+|++|++.|++.++.|+.|.+..+..... +..   .+...+.+    
T Consensus        92 L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~-~~~---~~~~~~~~----  163 (549)
T KOG4660|consen   92 LLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAM-GLQ---SGTSFLNH----  163 (549)
T ss_pred             HHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccc-hhc---ccchhhhh----
Confidence            5689999999999987778899999999999999999999999999999888221110000 000   00001111    


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                          +..|...+...-.+.. .++.- |++..+..-++.+++.+| .+.. +..+.-+..-+++|.+..++..+...+ |
T Consensus       164 ----~~~p~a~s~pgg~~~~-~~~g~-l~P~~s~~~~~~~~~~~~-~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G  234 (549)
T KOG4660|consen  164 ----FGSPLANSPPGGWPRG-QLFGM-LSPTRSSILLEHISSVDG-SSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-G  234 (549)
T ss_pred             ----ccchhhcCCCCCCcCC-cceee-eccchhhhhhhcchhccC-cccc-ccccchhhhhhhhhccccchhhcccCC-c
Confidence                1111111111111112 23332 999999888888999999 6655 555433457789999999998887755 8


Q ss_pred             eecCCCCeEEEEecCc
Q psy17274        161 HQLSEQSHLRVSFSKS  176 (184)
Q Consensus       161 ~~i~g~~~l~v~~~~~  176 (184)
                      ..+.+ ....++|+.+
T Consensus       235 ~~~s~-~~~v~t~S~~  249 (549)
T KOG4660|consen  235 FLISN-SSGVITFSGP  249 (549)
T ss_pred             eecCC-CCceEEecCC
Confidence            88888 5777777765

>KOG4208|consensus

Probab=98.90  E-value=2.9e-09  Score=76.44  Aligned_cols=58  Identities=16%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             hhhhccC-CCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          2 FSLTGVY-GDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         2 ~~lF~~y-G~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      ...|.++ |.|+++++-+     +++|||||+|++++.|..|-++||+.-|+|+.|.|.+-...
T Consensus        67 ~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   67 LNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             hhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence            4567777 7777877656     58999999999999999999999999999999999986544

>KOG0113|consensus

Probab=98.89  E-value=4.9e-09  Score=79.12  Aligned_cols=62  Identities=18%  Similarity=0.346  Sum_probs=55.8

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ   62 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~   62 (184)
                      |...|+.||+|++|.+++     .++|||||+|.++.+...|.+..+|..+.|+.|.|.+-...++.
T Consensus       118 LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvk  184 (335)
T KOG0113|consen  118 LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVK  184 (335)
T ss_pred             HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccc
Confidence            346799999999999887     47999999999999999999999999999999999987766553

>KOG0146|consensus

Probab=98.84  E-value=1.2e-08  Score=76.04  Aligned_cols=78  Identities=21%  Similarity=0.353  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeec-CCC-CeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQL-SEQ-SHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i-~g~-~~l~v~  172 (184)
                      ..+.|||+-|...-+|+|++.+|.+|| .|+++.+.+    .+||+|||.|.+..||..||..|||..- .|. -.|.|.
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG-~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK   96 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFG-NIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK   96 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccC-CcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence            356799999999999999999999999 999999986    3589999999999999999999999854 442 478888


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |+...
T Consensus        97 ~ADTd  101 (371)
T KOG0146|consen   97 FADTD  101 (371)
T ss_pred             eccch
Confidence            87643

>KOG0112|consensus

Probab=98.80  E-value=4.1e-09  Score=89.56  Aligned_cols=137  Identities=16%  Similarity=0.175  Sum_probs=111.9

Q ss_pred             hhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          2 FSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      -..|..+|.|.+|.+-.    ....||||.|.+...+-+|...+.+..+..-.+++.+...                   
T Consensus       390 R~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~-------------------  450 (975)
T KOG0112|consen  390 RPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP-------------------  450 (975)
T ss_pred             hhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-------------------
Confidence            35789999999998644    2357899999999999999988888776544444433321                   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ  157 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~  157 (184)
                                        ...+++.+++++|++-+.-..|...|..|| .|..|.+- ....||+|+|+++..|+.|+..
T Consensus       451 ------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fG-pir~Idy~-hgq~yayi~yes~~~aq~a~~~  510 (975)
T KOG0112|consen  451 ------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFG-PIRIIDYR-HGQPYAYIQYESPPAAQAATHD  510 (975)
T ss_pred             ------------------ccccceeeccCCCCCCChHHHHHHHhhccC-cceeeecc-cCCcceeeecccCccchhhHHH
Confidence                              001577899999999999999999999999 78777654 4678999999999999999999


Q ss_pred             hcCeecCCC-CeEEEEecCcc
Q psy17274        158 MHNHQLSEQ-SHLRVSFSKSN  177 (184)
Q Consensus       158 lng~~i~g~-~~l~v~~~~~~  177 (184)
                      |-|..++|+ +.|+|.|++..
T Consensus       511 ~rgap~G~P~~r~rvdla~~~  531 (975)
T KOG0112|consen  511 MRGAPLGGPPRRLRVDLASPP  531 (975)
T ss_pred             HhcCcCCCCCcccccccccCC
Confidence            999999987 78999999876

>KOG0226|consensus

Probab=98.80  E-value=1.1e-08  Score=75.60  Aligned_cols=141  Identities=13%  Similarity=0.206  Sum_probs=95.2

Q ss_pred             hhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          2 FSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      +..|+.|-.....++++    .-.+.+|+.|.....-.++-..-++..+.-+++++  +.....             .| 
T Consensus       117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gtsw-------------ed-  180 (290)
T KOG0226|consen  117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGTSW-------------ED-  180 (290)
T ss_pred             hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccccc-------------CC-
Confidence            34555555555555444    24678888888777766666555554444443332  221111             11 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAI  152 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~  152 (184)
                                |...++..   -.-.||++.|.-.++++.|...|.+|- .....++++     +++|++||.|.+++++.
T Consensus       181 ----------Psl~ew~~---~DfRIfcgdlgNevnd~vl~raf~Kfp-sf~~akviRdkRTgKSkgygfVSf~~pad~~  246 (290)
T KOG0226|consen  181 ----------PSLAEWDE---DDFRIFCGDLGNEVNDDVLARAFKKFP-SFQKAKVIRDKRTGKSKGYGFVSFRDPADYV  246 (290)
T ss_pred             ----------cccccCcc---ccceeecccccccccHHHHHHHHHhcc-chhhccccccccccccccceeeeecCHHHHH
Confidence                      10001100   234699999999999999999999998 777777775     34799999999999999


Q ss_pred             HHHHHhcCeecCCCCeEEEEe
Q psy17274        153 TALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus       153 ~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .|+..|||..++. ++|++.=
T Consensus       247 rAmrem~gkyVgs-rpiklRk  266 (290)
T KOG0226|consen  247 RAMREMNGKYVGS-RPIKLRK  266 (290)
T ss_pred             HHHHhhccccccc-chhHhhh
Confidence            9999999999999 8887643

>KOG0108|consensus

Probab=98.75  E-value=1.4e-08  Score=82.09  Aligned_cols=61  Identities=18%  Similarity=0.364  Sum_probs=55.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|+..|.|.++++..     +.+||||++|.+.++|.+|++.|||.++.|++|+|.|+.....
T Consensus        35 l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~  100 (435)
T KOG0108|consen   35 LLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN  100 (435)
T ss_pred             HHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence            568999999999999886     4789999999999999999999999999999999999865543

>KOG1365|consensus

Probab=98.67  E-value=1.8e-08  Score=78.57  Aligned_cols=154  Identities=17%  Similarity=0.227  Sum_probs=94.8

Q ss_pred             CeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCCCCCCCcccccCCCCCC
Q psy17274         10 DVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEGQPDAGLTKDYTASPLH   83 (184)
Q Consensus        10 ~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ....|-++.    +..|-|||.|+.+++|+.|+.. +...+.-|=|.+..|.......  .+...+  +..... .++. 
T Consensus       191 g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~--pLi~~~-~sp~-  265 (508)
T KOG1365|consen  191 GTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE--PLIPGL-TSPL-  265 (508)
T ss_pred             CccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc--cccCCC-CCCC-
Confidence            445565554    3568899999999999999953 3333333334444333222110  000000  000000 0000 


Q ss_pred             CCCCCCCCCCCCCCC---CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--EEEccCC----CceEEEEeCCHHHHHHH
Q psy17274         84 RFKKPGSKNFQNIYP---PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--FKFFPKD----RKMALLQLDSIEEAITA  154 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~---~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--v~v~~~~----~~~afV~f~~~~~A~~A  154 (184)
                         -|.  ...+..+   +..+|-+.+||+..+.+++.+.|..|-..|..  |.+.-+.    .|.|||+|.+.++|..|
T Consensus       266 ---~p~--~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aa  340 (508)
T KOG1365|consen  266 ---LPG--GPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAA  340 (508)
T ss_pred             ---CCC--CccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHH
Confidence               000  0111111   35689999999999999999999998743433  5554432    58999999999999999


Q ss_pred             HHHhcCeecCCCCeEEEEec
Q psy17274        155 LIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       155 i~~lng~~i~g~~~l~v~~~  174 (184)
                      ....+.+.+.+ |.|.|--+
T Consensus       341 aqk~hk~~mk~-RYiEvfp~  359 (508)
T KOG1365|consen  341 AQKCHKKLMKS-RYIEVFPC  359 (508)
T ss_pred             HHHHHHhhccc-ceEEEeec
Confidence            99999999999 88888543

>KOG0106|consensus

Probab=98.66  E-value=2.4e-08  Score=73.26  Aligned_cols=70  Identities=13%  Similarity=0.295  Sum_probs=63.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+||++||+.+.+.+|..+|..|| .+..+.+.   .+++||+|++..+|..|+.-|||..+.| -.+.|.|++.
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg-~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~-e~~vve~~r~   72 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYG-KIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCG-ERLVVEHARG   72 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhcc-ccccceee---cccceeccCchhhhhcccchhcCceecc-eeeeeecccc
Confidence            589999999999999999999999 88887653   4889999999999999999999999999 4799999884

>KOG1548|consensus

Probab=98.63  E-value=1.5e-07  Score=72.56  Aligned_cols=76  Identities=22%  Similarity=0.313  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCcee--------EEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVK--------GFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~--------~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      ++.|||+|||.++|.+++.++|+.+| .|.        .|++....    +|-|.|.|-..++-.-|+..|++..+.| +
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcG-iI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg-~  211 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCG-IIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG-K  211 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcc-eEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-c
Confidence            45699999999999999999999999 542        35666532    6899999999999999999999999999 8


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      .|+|+-++-+
T Consensus       212 ~~rVerAkfq  221 (382)
T KOG1548|consen  212 KLRVERAKFQ  221 (382)
T ss_pred             EEEEehhhhh
Confidence            9999977655

>KOG0149|consensus

Probab=98.63  E-value=3.2e-08  Score=72.52  Aligned_cols=57  Identities=9%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.+.|++||+|+...|+.     +++||+||+|.|.++|.+|++.- +-.+.||+-.|.++..
T Consensus        29 l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l   90 (247)
T KOG0149|consen   29 LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL   90 (247)
T ss_pred             HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence            567899999999988876     58999999999999999999764 3468999999987754

>KOG4210|consensus

Probab=98.62  E-value=5.8e-08  Score=74.96  Aligned_cols=149  Identities=15%  Similarity=0.211  Sum_probs=106.3

Q ss_pred             hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      +++..+|.+.......     .++|++.+.|...+.+..|+...-.....++.+.....+......              
T Consensus       107 ~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~--------------  172 (285)
T KOG4210|consen  107 NFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRP--------------  172 (285)
T ss_pred             ccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccc--------------
Confidence            4566777665544333     368999999999999999996554456666665554443211100              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAI  152 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~  152 (184)
                       .....+.         ...++...+++.|++..+++++|+..|..+| .|..+++...     .+++|+|.|.+..++.
T Consensus       173 -~n~~~~~---------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~-~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~  241 (285)
T KOG4210|consen  173 -KNKLSRL---------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSG-EITSVRLPTDEESGDSKGFAYVDFSAGNSKK  241 (285)
T ss_pred             -cchhccc---------ccCccccceeecccccccchHHHhhhccCcC-cceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence             0000000         0111334455999999999999999999999 9999987652     2689999999999999


Q ss_pred             HHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        153 TALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       153 ~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      .|+.. +...+.+ +++.+.+.+...
T Consensus       242 ~~~~~-~~~~~~~-~~~~~~~~~~~~  265 (285)
T KOG4210|consen  242 LALND-QTRSIGG-RPLRLEEDEPRP  265 (285)
T ss_pred             HHhhc-ccCcccC-cccccccCCCCc
Confidence            99998 8999999 899999988763

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=98.59  E-value=2.2e-07  Score=61.23  Aligned_cols=59  Identities=22%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH  161 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~  161 (184)
                      .+|++.+++..++.++|++.|++|| .|..|.+.+ +...|+|.|.+++.|..|+..+.-.
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g-~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFG-EVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS---EEEEE--T-T-SEEEEEESS---HHHHHHHHHHT
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcC-CcceEEecC-CCCEEEEEECCcchHHHHHHHHHhc
Confidence            4789999999999999999999999 999998874 7789999999999999999988765

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG2193|consensus

Probab=98.53  E-value=5e-09  Score=82.54  Aligned_cols=119  Identities=20%  Similarity=0.307  Sum_probs=99.8

Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhCCc-eecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q psy17274         20 KKDSALIQMAESHQAHLAMMHMDKL-RVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYP   98 (184)
Q Consensus        20 ~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (184)
                      +.|||||.+.+...|.+|++.++|. ++.|+++.++.+-.+..                                     
T Consensus        36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-------------------------------------   78 (584)
T KOG2193|consen   36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-------------------------------------   78 (584)
T ss_pred             ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH-------------------------------------
Confidence            4699999999999999999999996 78899999987652221                                     


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEE--EEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMAL--LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~af--V~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .++.+-|.|+|+...|+.|..|..+|| .|+.+.........+.  |+|.+.+.+..||..|||.++.. ..++++|-..
T Consensus        79 rsrk~Qirnippql~wevld~Ll~qyg-~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en-~~~k~~YiPd  156 (584)
T KOG2193|consen   79 RSRKIQIRNIPPQLQWEVLDSLLAQYG-TVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN-QHLKVGYIPD  156 (584)
T ss_pred             HhhhhhHhcCCHHHHHHHHHHHHhccC-CHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh-hhhhcccCch
Confidence            244588999999999999999999999 8988877644444443  68899999999999999999999 7999999654


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus       157 e  157 (584)
T KOG2193|consen  157 E  157 (584)
T ss_pred             h
Confidence            3

>KOG4209|consensus

Probab=98.51  E-value=1.8e-07  Score=70.06  Aligned_cols=77  Identities=16%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..+.+||+|+...+|.+++..+|+.|| .|..+.+..     ..+++|||+|.+.+.+.+|+. |||..+.| +.+.|++
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg-~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~-~~i~vt~  176 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCG-GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG-PAIEVTL  176 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccC-CccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc-ccceeee
Confidence            467899999999999999999999999 887777654     247899999999999999999 99999999 7999998


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      .+-.+
T Consensus       177 ~r~~~  181 (231)
T KOG4209|consen  177 KRTNV  181 (231)
T ss_pred             eeeec
Confidence            77653

>KOG4454|consensus

Probab=98.46  E-value=6.4e-08  Score=70.26  Aligned_cols=76  Identities=20%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ..++|+|.|+-..++|+-|.++|-+.| +|.+|.|-..   ...+|||.|.+...-.-|+..|||..+.+ +.|++.+-.
T Consensus         8 ~drtl~v~n~~~~v~eelL~ElfiqaG-PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~-~e~q~~~r~   85 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVSEELLSELFIQAG-PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE-DEEQRTLRC   85 (267)
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHhhccC-ceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc-chhhccccc
Confidence            367899999999999999999999999 8888876431   13599999999999999999999999999 688888754


Q ss_pred             c
Q psy17274        176 S  176 (184)
Q Consensus       176 ~  176 (184)
                      .
T Consensus        86 G   86 (267)
T KOG4454|consen   86 G   86 (267)
T ss_pred             C
Confidence            3

>KOG0116|consensus

Probab=98.43  E-value=5e-07  Score=72.83  Aligned_cols=75  Identities=16%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---C--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---D--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ..+|||.|||.++++.+|++.|.+|| .|+...|..+   .  .++|||+|++.+++..|+.+= -..+++ ++|.|.-.
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG-~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-~kl~Veek  364 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFG-PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-RKLNVEEK  364 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcc-cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC-eeEEEEec
Confidence            34599999999999999999999999 8887776542   2  379999999999999999864 777888 89999866


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +..
T Consensus       365 ~~~  367 (419)
T KOG0116|consen  365 RPG  367 (419)
T ss_pred             ccc
Confidence            553

>KOG4661|consensus

Probab=98.40  E-value=3.7e-07  Score=74.80  Aligned_cols=60  Identities=22%  Similarity=0.403  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.+||++||+|.-.+++.+     -+-|+||+|.+.++|.++|+.|+-+++.|+.|.|+-+++..
T Consensus       422 LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp  486 (940)
T KOG4661|consen  422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP  486 (940)
T ss_pred             HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence            5789999999999988873     35689999999999999999999999999999999887553

>KOG0153|consensus

Probab=98.40  E-value=5.1e-07  Score=69.69  Aligned_cols=57  Identities=18%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~   58 (184)
                      |.+.|.+||+|.+|.++. .+++|||+|.+.++|+.|.+.+-+ ..+.|++|.|.|++.
T Consensus       245 IrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  245 IRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             HHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence            457899999999999887 458999999999999998775544 466899999999986

>KOG4454|consensus

Probab=98.38  E-value=1.2e-07  Score=68.98  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=85.0

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |++||-+-|+|.+|.|..   .+..||||.|.+.-+..-|++.+||..++++.+.+.+-....-                
T Consensus        26 L~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sh----------------   89 (267)
T KOG4454|consen   26 LSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSH----------------   89 (267)
T ss_pred             HHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCCc----------------
Confidence            678999999999998876   2445999999999999999999999999999988854220000                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--C--CCceEEEEeCCHHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--K--DRKMALLQLDSIEEAIT  153 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~--~~~~afV~f~~~~~A~~  153 (184)
                                                  .-|...++++.+...|+.-| .+..+++-.  +  .+.++|+.+--....-.
T Consensus        90 ----------------------------apld~r~~~ei~~~v~s~a~-p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~  140 (267)
T KOG4454|consen   90 ----------------------------APLDERVTEEILYEVFSQAG-PIEGVRIPTDNDGRNRNFGFVTYQRLCAVPF  140 (267)
T ss_pred             ----------------------------chhhhhcchhhheeeecccC-CCCCccccccccCCccCccchhhhhhhcCcH
Confidence                                        00455666777777777777 666665543  1  35677777766666666


Q ss_pred             HHHHhcCeecC
Q psy17274        154 ALIQMHNHQLS  164 (184)
Q Consensus       154 Ai~~lng~~i~  164 (184)
                      |+....+....
T Consensus       141 ~~~~y~~l~~~  151 (267)
T KOG4454|consen  141 ALDLYQGLELF  151 (267)
T ss_pred             HhhhhcccCcC
Confidence            66666655443

>KOG0132|consensus

Probab=98.36  E-value=5.8e-07  Score=75.85  Aligned_cols=58  Identities=16%  Similarity=0.360  Sum_probs=53.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||+|.+|.++. .+|+|||.|....+|.+|++.|++..+.++.|+|.|+...
T Consensus       438 L~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~  495 (894)
T KOG0132|consen  438 LANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK  495 (894)
T ss_pred             HHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence            568999999999998765 7899999999999999999999999999999999998643

>KOG0128|consensus

Probab=98.34  E-value=1e-07  Score=80.94  Aligned_cols=121  Identities=20%  Similarity=0.253  Sum_probs=97.9

Q ss_pred             hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274          2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD   76 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~   76 (184)
                      ...|+.+|-+..+++..     .-+|+|+++|..+++|.+|+...++. ++|+                           
T Consensus       685 ~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~gK---------------------------  736 (881)
T KOG0128|consen  685 SERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFGK---------------------------  736 (881)
T ss_pred             hhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhhh---------------------------
Confidence            45678888887776552     35899999999999999999665554 3331                           


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHH
Q psy17274         77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAI  152 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~  152 (184)
                                              ..++|.|.|+..|.++|+.+|..+| .++..+++.    +.+|.|+|.|.+..+|.
T Consensus       737 ------------------------~~v~i~g~pf~gt~e~~k~l~~~~g-n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s  791 (881)
T KOG0128|consen  737 ------------------------ISVAISGPPFQGTKEELKSLASKTG-NVTSLRLVTVRAGKPKGKARVDYNTEADAS  791 (881)
T ss_pred             ------------------------hhhheeCCCCCCchHHHHhhccccC-CccccchhhhhccccccceeccCCCcchhh
Confidence                                    1388999999999999999999999 888887653    23689999999999999


Q ss_pred             HHHHHhcCeecCCCCeEEEEecCc
Q psy17274        153 TALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       153 ~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+...+++..+.- +.+.|..+.+
T Consensus       792 ~~~~s~d~~~~rE-~~~~v~vsnp  814 (881)
T KOG0128|consen  792 RKVASVDVAGKRE-NNGEVQVSNP  814 (881)
T ss_pred             hhcccchhhhhhh-cCccccccCC
Confidence            9999999999888 6777776544

>KOG0129|consensus

Probab=98.34  E-value=2e-05  Score=64.04  Aligned_cols=135  Identities=14%  Similarity=0.110  Sum_probs=89.0

Q ss_pred             hhhhccCCCeeEEEEee-------CCCC---eEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc----ccC-CCC
Q psy17274          2 FSLTGVYGDVLRVKILY-------NKKD---SALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA----VQL-PKE   66 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-------~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~----~~~-~~~   66 (184)
                      .+-|..||.+.-=+-.+       -.+|   |+|..|++..+++.-+.+.   ...+..+.++.+....    +++ |..
T Consensus       277 ~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~yf~vss~~~k~k~VQIrPW~  353 (520)
T KOG0129|consen  277 NASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNYYFKVSSPTIKDKEVQIRPWV  353 (520)
T ss_pred             HhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccceEEEEecCcccccceeEEeeE
Confidence            45688888875433211       1356   9999999999988877654   3355666665553221    111 110


Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCceeEEEEccC-----CCce
Q psy17274         67 GQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFT-EKGFTVKGFKFFPK-----DRKM  140 (184)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~~v~~v~v~~~-----~~~~  140 (184)
                      ..     ..+|..+            .+....|.+||||++||--++.++|-.+|+ -|| .|..+-|--+     .+|.
T Consensus       354 la-----Ds~fv~d------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG-gV~yaGIDtD~k~KYPkGa  415 (520)
T KOG0129|consen  354 LA-----DSDFVLD------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG-GVLYVGIDTDPKLKYPKGA  415 (520)
T ss_pred             ec-----cchhhhc------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcC-ceEEEEeccCcccCCCCCc
Confidence            00     0011111            112233789999999999999999999999 689 7877766432     3799


Q ss_pred             EEEEeCCHHHHHHHHHH
Q psy17274        141 ALLQLDSIEEAITALIQ  157 (184)
Q Consensus       141 afV~f~~~~~A~~Ai~~  157 (184)
                      |-|.|.+-..=.+||.+
T Consensus       416 GRVtFsnqqsYi~AIsa  432 (520)
T KOG0129|consen  416 GRVTFSNQQAYIKAISA  432 (520)
T ss_pred             ceeeecccHHHHHHHhh
Confidence            99999999999999885

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=98.25  E-value=1.7e-05  Score=51.26  Aligned_cols=79  Identities=16%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcC-CceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCC---CeEEE
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQ---SHLRV  171 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G-~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~---~~l~v  171 (184)
                      +||-|.|+|..+|.++|.+++.... +..+-+-+.-     -+.|+|||.|.+++.|.+-.+.++|+.....   +...|
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i   81 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI   81 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence            4799999999999999999987643 1333332211     1369999999999999999999999998632   67899


Q ss_pred             EecCcccc
Q psy17274        172 SFSKSNIQ  179 (184)
Q Consensus       172 ~~~~~~~~  179 (184)
                      +|++-+-.
T Consensus        82 ~yAriQG~   89 (97)
T PF04059_consen   82 SYARIQGK   89 (97)
T ss_pred             ehhHhhCH
Confidence            99987643

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0415|consensus

Probab=98.24  E-value=1.4e-06  Score=67.68  Aligned_cols=58  Identities=14%  Similarity=0.316  Sum_probs=52.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |--+||.||.|.++.+++     .+--||||+|.+.++++.|.-.|++..+..++|.|.||..
T Consensus       256 LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS  318 (479)
T KOG0415|consen  256 LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS  318 (479)
T ss_pred             hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence            345899999999999998     2457999999999999999999999999999999999763

>KOG4211|consensus

Probab=98.24  E-value=4.2e-06  Score=67.47  Aligned_cols=71  Identities=20%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ...|.+.+||.++|++||.+.|+.++  |+++.+.+.   ..|.|+|+|.+.+++.+|++ .|-..++. |-|.|-=+
T Consensus        10 ~~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~-RYIEVf~~   83 (510)
T KOG4211|consen   10 AFEVRLRGLPWSATEKEILDFFSNCG--IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGH-RYIEVFTA   83 (510)
T ss_pred             ceEEEecCCCccccHHHHHHHHhcCc--eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCC-ceEEEEcc
Confidence            45688899999999999999999998  777766653   36899999999999999998 57777777 78888654

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=98.23  E-value=9.5e-06  Score=52.75  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEE------------EccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK------------FFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~------------v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      ...|.|.+.|+.. ...+.+.|++|| .|.+..            -.+...+.-.|+|+++.+|.+||. -||..+.|.-
T Consensus         6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G-~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~   82 (100)
T PF05172_consen    6 ETWVTVFGFPPSA-SNQVLRHFSSFG-TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL   82 (100)
T ss_dssp             CCEEEEE---GGG-HHHHHHHHHCCS--EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred             CeEEEEEccCHHH-HHHHHHHHHhcc-eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence            4568999999985 567888999999 887764            223467899999999999999998 7999999943


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      -+-|.|.++.
T Consensus        83 mvGV~~~~~~   92 (100)
T PF05172_consen   83 MVGVKPCDPA   92 (100)
T ss_dssp             EEEEEE-HHH
T ss_pred             EEEEEEcHHh
Confidence            4457766544

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG3152|consensus

Probab=98.23  E-value=7.5e-07  Score=66.15  Aligned_cols=66  Identities=21%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----------C------ceEEEEeCCHHHHHHHHHHhcCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----------R------KMALLQLDSIEEAITALIQMHNH  161 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----------~------~~afV~f~~~~~A~~Ai~~lng~  161 (184)
                      .+-+||++|+|+.+...-|+++++.|| .|-+|.+.+..           .      ..|-|+|.+...|..+...|||.
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yG-eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~  151 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYG-EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT  151 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhcc-ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            356899999999999999999999999 99999887621           0      25789999999999999999999


Q ss_pred             ecCC
Q psy17274        162 QLSE  165 (184)
Q Consensus       162 ~i~g  165 (184)
                      +|+|
T Consensus       152 ~Igg  155 (278)
T KOG3152|consen  152 PIGG  155 (278)
T ss_pred             ccCC
Confidence            9999

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=98.20  E-value=5.8e-06  Score=63.88  Aligned_cols=76  Identities=18%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             CCEEEEeCCCCCCCHHH----H--HHHHHhcCCceeEEEEccCC------Cc--eEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274        100 SPTLHLSNIPASVTEDE----L--KEAFTEKGFTVKGFKFFPKD------RK--MALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~----l--~~~F~~~G~~v~~v~v~~~~------~~--~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      .+-+||.+||+.+..++    |  .+.|.+|| .|..|.|-++.      .+  -.+|+|.+.+||.+||...+|..++|
T Consensus       114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG-kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG  192 (480)
T COG5175         114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG-KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG  192 (480)
T ss_pred             cceeEEecCCCCCCcccccccccchhhhhhcc-ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence            34579999998887666    3  37899999 99999776521      12  23999999999999999999999999


Q ss_pred             CCeEEEEecCcc
Q psy17274        166 QSHLRVSFSKSN  177 (184)
Q Consensus       166 ~~~l~v~~~~~~  177 (184)
                       |.|+.+|+...
T Consensus       193 -r~lkatYGTTK  203 (480)
T COG5175         193 -RVLKATYGTTK  203 (480)
T ss_pred             -ceEeeecCchH
Confidence             99999998653

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=98.16  E-value=9.6e-06  Score=46.56  Aligned_cols=52  Identities=23%  Similarity=0.318  Sum_probs=43.6

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL  155 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai  155 (184)
                      +.|-|.+.|+...+ .+...|..|| +|..+.+- ..+...+|+|.+..+|++|+
T Consensus         2 ~wI~V~Gf~~~~~~-~vl~~F~~fG-eI~~~~~~-~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDLAE-EVLEHFASFG-EIVDIYVP-ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchHHH-HHHHHHHhcC-CEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence            46889999988764 5556999999 99998875 46889999999999999985

>KOG4307|consensus

Probab=98.14  E-value=9.8e-06  Score=67.99  Aligned_cols=151  Identities=11%  Similarity=0.014  Sum_probs=97.9

Q ss_pred             CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCC-----CCCC-CCCCCC
Q psy17274         19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPL-----HRFK-KPGSKN   92 (184)
Q Consensus        19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~   92 (184)
                      ...|-++|+|....++++|++ -|...+-.|.+.+..........+.+-....+. .+...+..     .+.. .++.. 
T Consensus       350 ~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~-~~~~~~hg~p~~~pr~~~~~gq~-  426 (944)
T KOG4307|consen  350 PQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPP-PVIQNNHGRPIAPPRAMVRPGQN-  426 (944)
T ss_pred             CcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCC-CcccccCCCCCCCcccccCCCCC-
Confidence            347999999999999999984 466667778888876554433322111100000 00000000     0000 01111 


Q ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEcc--CC--CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         93 FQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFP--KD--RKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        93 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~--~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      ..-..+.+.+|||..||..+++.++.+.|...- .|+. |.+.+  ++  ++.|||.|..++++..|...-+.+.++. +
T Consensus       427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~-~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~-r  504 (944)
T KOG4307|consen  427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA-AVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH-R  504 (944)
T ss_pred             CCCCCCccceEEeccCCccccccchhhhhhhhh-hhhheeEeccCCcccccchhhheeccccccchhhhcccccccCc-e
Confidence            001112467899999999999999999999887 5655 65543  22  5899999999999999999888888888 8


Q ss_pred             eEEEEec
Q psy17274        168 HLRVSFS  174 (184)
Q Consensus       168 ~l~v~~~  174 (184)
                      .|+|.-.
T Consensus       505 ~irv~si  511 (944)
T KOG4307|consen  505 IIRVDSI  511 (944)
T ss_pred             EEEeech
Confidence            9999743

>KOG0115|consensus

Probab=98.12  E-value=1e-05  Score=60.24  Aligned_cols=91  Identities=18%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC
Q psy17274         32 HQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS  111 (184)
Q Consensus        32 ~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~  111 (184)
                      .-|..|...|++....|+.|+|.|+.+                                          ..|+|.||+..
T Consensus         5 t~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~   42 (275)
T KOG0115|consen    5 TLAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQG   42 (275)
T ss_pred             cHHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchh
Confidence            347788889999999999999998862                                          35999999999


Q ss_pred             CCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274        112 VTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus       112 ~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      ++.+.|.+-|+.|| .|++..+..+    ..+.++|+|...-.|.+|+..++..-+.+
T Consensus        43 ~sndll~~~f~~fg-~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~   99 (275)
T KOG0115|consen   43 ASNDLLEQAFRRFG-PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG   99 (275)
T ss_pred             hhhHHHHHhhhhcC-ccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence            99999999999999 7766544432    24788999999999999999997665555

>KOG4205|consensus

Probab=98.11  E-value=2.8e-06  Score=66.09  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=58.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ...|+|++|+..++++.|++.|++|| +|..+.++.     ++++++||+|++++.-..++. ..-+.|.| +.|.+.=+
T Consensus         6 ~~KlfiGgisw~ttee~Lr~yf~~~G-ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg-r~ve~k~a   82 (311)
T KOG4205|consen    6 SGKLFIGGLSWETTEESLREYFSQFG-EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG-RSVEPKRA   82 (311)
T ss_pred             CcceeecCcCccccHHHHHHHhcccC-ceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCC-ccccceec
Confidence            55799999999999999999999999 999998886     347999999999888877766 44556677 66655433

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.05  E-value=1.1e-05  Score=50.08  Aligned_cols=51  Identities=27%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             hhhhccCC-CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          2 FSLTGVYG-DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG-~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      .+|+..|| +|.+|     ..+.|.|.|.+++.|.+|...|+|..++|++|.|.|+.
T Consensus        24 ~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen   24 RQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             HHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred             HHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence            45666665 56554     46999999999999999999999999999999999875

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG1365|consensus

Probab=98.00  E-value=0.00012  Score=57.69  Aligned_cols=130  Identities=16%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q psy17274         19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYP   98 (184)
Q Consensus        19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (184)
                      ...|.|.|.|.++|.-+-|++. +...+.++.|.|.-+....--.          ....+......|.+   +.      
T Consensus       100 rRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f~~----------iagg~s~e~~~fls---k~------  159 (508)
T KOG1365|consen  100 RRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEFLK----------IAGGTSNEAAPFLS---KE------  159 (508)
T ss_pred             ccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhheE----------ecCCccccCCCCCC---cc------
Confidence            4569999999999999999954 5666778888886443211100          00000000011111   00      


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC---CceeEEEEcc--CC--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKG---FTVKGFKFFP--KD--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G---~~v~~v~v~~--~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      ....|-..+||+++++.++.+.|.+--   ...+.|-++.  ++  .|.|||.|..+++|..|+.+ |...|+- |-|.
T Consensus       160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGq-RYIE  236 (508)
T KOG1365|consen  160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQ-RYIE  236 (508)
T ss_pred             cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhH-HHHH
Confidence            123566789999999999999996422   1223332322  23  58999999999999999874 3333333 4443

>KOG4307|consensus

Probab=97.96  E-value=3.2e-05  Score=65.01  Aligned_cols=72  Identities=18%  Similarity=0.288  Sum_probs=62.6

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++|-+.|+|.+++-+|+.++|..|-+...+|++-.++    .|.+.|-|++.++|..|...|+++.|.+ +.+++..
T Consensus       868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n-r~V~l~i  943 (944)
T KOG4307|consen  868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN-RVVSLRI  943 (944)
T ss_pred             eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc-eeEEEEe
Confidence            4889999999999999999999998555667665433    5789999999999999999999999999 8888754

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=97.87  E-value=0.00012  Score=50.51  Aligned_cols=74  Identities=23%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             CCCCEEEEeCCC-----CCCCHH----HHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         98 PPSPTLHLSNIP-----ASVTED----ELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        98 ~~~~~l~v~nlp-----~~~t~~----~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      ||..|+.|+=+.     ...-++    +|.+.|..|| .|.-|++..   +.-.|+|.+-+.|.+|+. |+|.+++| +.
T Consensus        25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~G-evvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g-~~   98 (146)
T PF08952_consen   25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYG-EVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNG-RT   98 (146)
T ss_dssp             -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS--ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETT-EE
T ss_pred             CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCC-ceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECC-EE
Confidence            367777776444     122233    6778899999 888887764   578999999999999988 99999999 89


Q ss_pred             EEEEecCcc
Q psy17274        169 LRVSFSKSN  177 (184)
Q Consensus       169 l~v~~~~~~  177 (184)
                      |+|....+.
T Consensus        99 l~i~LKtpd  107 (146)
T PF08952_consen   99 LKIRLKTPD  107 (146)
T ss_dssp             EEEEE----
T ss_pred             EEEEeCCcc
Confidence            999987654

; PDB: 1UFW_A 2DNR_A.

>KOG2202|consensus

Probab=97.85  E-value=4.2e-06  Score=62.33  Aligned_cols=56  Identities=14%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             hhhhc-cCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          2 FSLTG-VYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         2 ~~lF~-~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.-|+ +||+|+++++..+    -.|-++|.|...++|++|++.|||..+.|++|.++++.
T Consensus        86 f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p  146 (260)
T KOG2202|consen   86 FTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP  146 (260)
T ss_pred             HHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence            44555 8999999977664    46889999999999999999999999999999999875

>KOG1995|consensus

Probab=97.84  E-value=2e-05  Score=61.32  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=66.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      -..++||.+||..+++.++.+.|.++| .|..        |.+..     ..|+.|.|.|++...|+.|+..+++..+.+
T Consensus        65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg-~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g  143 (351)
T KOG1995|consen   65 DNETIFVWGCPDSVCENDNADFFLQCG-VIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG  143 (351)
T ss_pred             ccccceeeccCccchHHHHHHHHhhcc-eeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence            356799999999999999999999999 5532        22222     247899999999999999999999999999


Q ss_pred             CCeEEEEecCccc
Q psy17274        166 QSHLRVSFSKSNI  178 (184)
Q Consensus       166 ~~~l~v~~~~~~~  178 (184)
                       .+|+|+++...+
T Consensus       144 -n~ikvs~a~~r~  155 (351)
T KOG1995|consen  144 -NTIKVSLAERRT  155 (351)
T ss_pred             -CCchhhhhhhcc
Confidence             699999988765

>KOG1996|consensus

Probab=97.79  E-value=7.1e-05  Score=56.95  Aligned_cols=74  Identities=24%  Similarity=0.409  Sum_probs=58.2

Q ss_pred             CCCEEEEeCCC--CCCC---HHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         99 PSPTLHLSNIP--ASVT---EDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp--~~~t---~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      |+++|.+.|+=  ..++   +++++..|++|| .|.+|-|+.-      ..-.-||+|+..++|.+|+-.|||+.++| |
T Consensus       280 ptkvlllrnmVg~gevd~elede~keEceKyg-~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG-r  357 (378)
T KOG1996|consen  280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYG-KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG-R  357 (378)
T ss_pred             chHHHHhhhhcCcccccHHHHHHHHHHHHhhc-ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc-e
Confidence            56667777653  3343   567788999999 9988877641      12457999999999999999999999999 8


Q ss_pred             eEEEEec
Q psy17274        168 HLRVSFS  174 (184)
Q Consensus       168 ~l~v~~~  174 (184)
                      .++..|-
T Consensus       358 ~v~A~Fy  364 (378)
T KOG1996|consen  358 VVSACFY  364 (378)
T ss_pred             eeeheec
Confidence            9888774

>KOG1855|consensus

Probab=97.73  E-value=3.5e-05  Score=61.34  Aligned_cols=64  Identities=23%  Similarity=0.381  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------------------CCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------------------DRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------------------~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      ++++|.+.|||.+-.-+.|.+||+.+| .|..|+|...                  .+-.|+|+|+..+.|.+|.+.||.
T Consensus       230 ~srtivaenLP~Dh~~enl~kiFg~~G-~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~  308 (484)
T KOG1855|consen  230 PSRTIVAENLPLDHSYENLSKIFGTVG-SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP  308 (484)
T ss_pred             ccceEEEecCCcchHHHHHHHHhhccc-ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence            789999999999888899999999999 9999998642                  134799999999999999998866


Q ss_pred             eec
Q psy17274        161 HQL  163 (184)
Q Consensus       161 ~~i  163 (184)
                      ..-
T Consensus       309 e~~  311 (484)
T KOG1855|consen  309 EQN  311 (484)
T ss_pred             hhh
Confidence            544

>KOG0151|consensus

Probab=97.68  E-value=4.4e-05  Score=64.32  Aligned_cols=59  Identities=17%  Similarity=0.352  Sum_probs=53.0

Q ss_pred             hhhhccCCCeeEEEEee--------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          2 FSLTGVYGDVLRVKILY--------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      ...|..||+|.+|++|+        ....++||.|-+..+|++|+..|+|..+.+..+++.|++.-.
T Consensus       192 l~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~  258 (877)
T KOG0151|consen  192 LRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP  258 (877)
T ss_pred             HHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence            45689999999999998        357899999999999999999999999999999999997443

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.67  E-value=0.00015  Score=47.21  Aligned_cols=55  Identities=13%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             hhhhccCCCeeEEE------------EeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEcc
Q psy17274          2 FSLTGVYGDVLRVK------------ILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG~V~~v~------------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s~   57 (184)
                      .+.|++||+|.+..            -.....++-.|+|.++.+|.+|+ ..||..+.|.- +-|.+.+
T Consensus        23 l~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mvGV~~~~   90 (100)
T PF05172_consen   23 LRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMVGVKPCD   90 (100)
T ss_dssp             HHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEEEEEE-H
T ss_pred             HHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEEEEEEcH
Confidence            46899999998875            22246789999999999999999 67999998864 4466664

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG0533|consensus

Probab=97.62  E-value=0.00013  Score=54.92  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.+||..||++..+-+-.    .+.|+|-|.|...++|..|++.++|..+.|++|.+......
T Consensus       100 l~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~  162 (243)
T KOG0533|consen  100 LKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP  162 (243)
T ss_pred             HHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence            468999999999987665    36799999999999999999999999999999999875544

>KOG4209|consensus

Probab=97.61  E-value=9.5e-05  Score=55.52  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      ..|+.||.|..|.+..     ..+|+|||+|.+.+.++.|++ |||..+.|+.+.+.+-+-.
T Consensus       120 ~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~  180 (231)
T KOG4209|consen  120 LHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN  180 (231)
T ss_pred             heeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence            5689999999887776     368999999999999999997 9999999999999876643

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=97.60  E-value=0.0002  Score=49.41  Aligned_cols=53  Identities=19%  Similarity=0.476  Sum_probs=44.5

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.+.|..||+|.=|++.   .+.-+|+|.+.++|-+|+ .++|..+.|+.|.|..-.
T Consensus        53 ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt  105 (146)
T PF08952_consen   53 LLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT  105 (146)
T ss_dssp             HHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--
T ss_pred             HHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC
Confidence            35789999999888875   378999999999999999 789999999999998654

; PDB: 1UFW_A 2DNR_A.

>KOG2202|consensus

Probab=97.59  E-value=5e-05  Score=56.71  Aligned_cols=61  Identities=13%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             HHHHHHHH-hcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        115 DELKEAFT-EKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       115 ~~l~~~F~-~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +++...++ +|| +|+.+.|-.+.    .|-++|+|...++|..|+..|||.++.| ++|...++.-+
T Consensus        83 Ed~f~E~~~kyg-Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G-~pi~ae~~pvT  148 (260)
T KOG2202|consen   83 EDVFTELEDKYG-EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG-RPIHAELSPVT  148 (260)
T ss_pred             HHHHHHHHHHhh-hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC-CcceeeecCcC
Confidence            55666666 899 99888665422    5889999999999999999999999999 79999987643

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.57  E-value=0.00016  Score=56.08  Aligned_cols=55  Identities=13%  Similarity=0.259  Sum_probs=46.4

Q ss_pred             hhhccCCCeeEEEEeeC-----C-CC-e-EEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          3 SLTGVYGDVLRVKILYN-----K-KD-S-ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~~-----~-~g-~-afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      +.|.+||.|.+|-+-++     + .+ + .+|.|.+.|+|.+||...+|..+.||-|+..|..
T Consensus       139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT  201 (480)
T COG5175         139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT  201 (480)
T ss_pred             hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence            57999999999987652     1 12 2 3999999999999999999999999999998854

>KOG4676|consensus

Probab=97.56  E-value=4.5e-05  Score=60.12  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc----------
Q psy17274          1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ----------   62 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~----------   62 (184)
                      +++||...|+|..+.++.+        ....|||.|.+...+.-|- .|.++.|-++.|.|-..-...+.          
T Consensus        24 m~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~  102 (479)
T KOG4676|consen   24 MQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELAD  102 (479)
T ss_pred             HHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCc
Confidence            4689999999999998872        3578999999999999886 78888888998888654322211          


Q ss_pred             ---CCCCCCCCCCcccc-----cCCCCCCCCCCCCCC---CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE
Q psy17274         63 ---LPKEGQPDAGLTKD-----YTASPLHRFKKPGSK---NFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF  131 (184)
Q Consensus        63 ---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v  131 (184)
                         +|.....++-...+     .+..++.-...|...   ....+..-.++++|.+|+..+...++.+.|..+| .|...
T Consensus       103 ~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~G-ev~ya  181 (479)
T KOG4676|consen  103 QNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKG-EVSYA  181 (479)
T ss_pred             ccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcc-hhhhh
Confidence               01100011000000     000011111111110   0011111236799999999999999999999999 88766


Q ss_pred             EEccC-CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274        132 KFFPK-DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus       132 ~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      .+-.. ...++-++|..-.....|+. ++|....-
T Consensus       182 ~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~  215 (479)
T KOG4676|consen  182 HTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR  215 (479)
T ss_pred             hhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence            55432 24567799988888888877 67766654

>KOG2416|consensus

Probab=97.44  E-value=0.00024  Score=58.94  Aligned_cols=79  Identities=29%  Similarity=0.441  Sum_probs=66.7

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC--CCCeEEEEecC
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS--EQSHLRVSFSK  175 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~--g~~~l~v~~~~  175 (184)
                      +++++|||.||--..|.-.|+.+..+-|+.|+.. .+.+-+..|||.|.+.++|.....+|||...-  +++.|-+.|..
T Consensus       442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~  520 (718)
T KOG2416|consen  442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR  520 (718)
T ss_pred             CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence            3689999999999999999999999776477766 44456889999999999999999999999773  22889999987


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ..
T Consensus       521 ~d  522 (718)
T KOG2416|consen  521 AD  522 (718)
T ss_pred             hh
Confidence            54

>KOG2314|consensus

Probab=97.42  E-value=0.00078  Score=55.69  Aligned_cols=72  Identities=13%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             CCEEEEeCCCC--CCC----HHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274        100 SPTLHLSNIPA--SVT----EDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHL  169 (184)
Q Consensus       100 ~~~l~v~nlp~--~~t----~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l  169 (184)
                      ..+++|.|+|-  ...    ..-|..+|+++| ++....+...    .+|+.|++|++..+|..|++.|||+.+.-.|++
T Consensus        58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g-k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf  136 (698)
T KOG2314|consen   58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG-KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF  136 (698)
T ss_pred             ceEEEECCCcccChhHHHHHHHHHHHHHHhhc-cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence            46789999983  222    233567899999 8888765432    368999999999999999999999999765777


Q ss_pred             EEE
Q psy17274        170 RVS  172 (184)
Q Consensus       170 ~v~  172 (184)
                      .|.
T Consensus       137 ~v~  139 (698)
T KOG2314|consen  137 FVR  139 (698)
T ss_pred             Eee
Confidence            664

>KOG4676|consensus

Probab=97.38  E-value=0.00022  Score=56.39  Aligned_cols=73  Identities=14%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC--------CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--------RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~--------~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      .+|.|.||.++.|.+.++.||.-.| +|..++++|+.        ...|||.|.+...+..|-. |.++.+-+.-.|-+-
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lG-kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p   85 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLG-KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP   85 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhcc-ccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence            3799999999999999999999999 99999999832        3689999999998888855 666666551244444


Q ss_pred             ecC
Q psy17274        173 FSK  175 (184)
Q Consensus       173 ~~~  175 (184)
                      |..
T Consensus        86 ~~~   88 (479)
T KOG4676|consen   86 YGD   88 (479)
T ss_pred             cCC
Confidence            443

>KOG0116|consensus

Probab=97.31  E-value=0.00023  Score=57.70  Aligned_cols=56  Identities=11%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.+.|..||+|+...|...     ...||||+|.+.++++.|+++ +-..+.|++|.|+--+
T Consensus       305 l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~  365 (419)
T KOG0116|consen  305 LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR  365 (419)
T ss_pred             HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence            5689999999999887762     238999999999999999976 4667789999998644

>KOG0128|consensus

Probab=97.25  E-value=6.6e-06  Score=70.29  Aligned_cols=136  Identities=15%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             hhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          3 SLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      .-|..+|.|++|++..+     ...++++.+....+++.|. ...|..+.++...+..+....-.            .. 
T Consensus       591 ~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~------------~~-  656 (881)
T KOG0128|consen  591 RQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKE------------EN-  656 (881)
T ss_pred             HHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCCchhhh------------hc-
Confidence            35778999999987651     2347889999999998888 45666676666666544311100            00 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc--c---CCCceEEEEeCCHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF--P---KDRKMALLQLDSIEEAI  152 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~--~---~~~~~afV~f~~~~~A~  152 (184)
                           .+. .|.      ......++|++||++.+.+++|...|..+| .+..+.+.  .   +-+|.|+++|..+++|.
T Consensus       657 -----~kv-s~n------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~-~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~  723 (881)
T KOG0128|consen  657 -----FKV-SPN------EIRDLIKIFVSNLSPKMSEEDLSERFSPSG-TIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG  723 (881)
T ss_pred             -----cCc-Cch------HHHHHHHHHHhhcchhhcCchhhhhcCccc-hhhhHHHHHHhhccccccceeeEeecCCchh
Confidence                 000 000      000234689999999999999999999999 55444433  2   22799999999999999


Q ss_pred             HHHHHhcCeecCC
Q psy17274        153 TALIQMHNHQLSE  165 (184)
Q Consensus       153 ~Ai~~lng~~i~g  165 (184)
                      +|+...++..++-
T Consensus       724 aaV~f~d~~~~gK  736 (881)
T KOG0128|consen  724 AAVAFRDSCFFGK  736 (881)
T ss_pred             hhhhhhhhhhhhh
Confidence            9999766665544

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=97.20  E-value=0.0024  Score=39.75  Aligned_cols=57  Identities=14%  Similarity=0.328  Sum_probs=44.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      ...+.+|+ .|...-..||.++|++|| .| .|..+  +-..|||.....+.|..|+..+.-
T Consensus         8 RdHVFhlt-FPkeWK~~DI~qlFspfG-~I-~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen    8 RDHVFHLT-FPKEWKTSDIYQLFSPFG-QI-YVSWI--NDTSAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             GCCEEEEE---TT--HHHHHHHCCCCC-CE-EEEEE--CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred             cceEEEEe-CchHhhhhhHHHHhccCC-cE-EEEEE--cCCcEEEEeecHHHHHHHHHHhcc
Confidence            35677888 999999999999999999 66 46666  457899999999999999998864

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.19  E-value=0.00052  Score=39.31  Aligned_cols=36  Identities=8%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHH
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAM   38 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai   38 (184)
                      ...|..||+|.++.+- ....+.+|.|.+..+|++|+
T Consensus        18 l~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   18 LEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence            4579999999998864 35799999999999999985

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=97.16  E-value=0.0041  Score=36.65  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=43.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM  158 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l  158 (184)
                      .|+|.++ .+++.++++..|..|  +..+.+|..+.  -..+=|.|.+.+.|.+|+.+|
T Consensus         7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWId--DtScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWID--DTSCNVVFKDEETAARALVAL   62 (62)
T ss_pred             eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence            5999998 568889999999999  11255787773  346889999999999999865

>KOG2314|consensus

Probab=97.15  E-value=0.00041  Score=57.27  Aligned_cols=55  Identities=13%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMI   55 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~   55 (184)
                      |..+|+++|+|...-+..    ..+|+.|++|++..+|+.|++.|||..+. ..++.|..
T Consensus        81 l~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~  140 (698)
T KOG2314|consen   81 LTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL  140 (698)
T ss_pred             HHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence            356899999998887653    46899999999999999999999999885 45566653

>KOG1996|consensus

Probab=97.14  E-value=0.00096  Score=50.96  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             hhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          4 LTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         4 lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      -.++||.|.+|.|..-      ..---||+|...++|.+|+-.|||.-|.||.++.+|-.
T Consensus       306 EceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn  365 (378)
T KOG1996|consen  306 ECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN  365 (378)
T ss_pred             HHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence            4679999999987762      23447999999999999999999999999998887643

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=97.00  E-value=0.0059  Score=41.94  Aligned_cols=75  Identities=16%  Similarity=0.343  Sum_probs=55.8

Q ss_pred             CCCCCEEEEeCCCCCCC-HHHHH---HHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         97 YPPSPTLHLSNIPASVT-EDELK---EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t-~~~l~---~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      .||-.+|.|.=|..++. .+||+   .-.+.|| +|.+|...  ++..|.|.|.+..+|=+|+.+++. ...| .-++++
T Consensus        83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG-pI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pg-tm~qCs  157 (166)
T PF15023_consen   83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG-PIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPG-TMFQCS  157 (166)
T ss_pred             CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC-Ccceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCC-ceEEee
Confidence            44667787765554442 34444   4567799 89988765  788999999999999999999988 4556 489998


Q ss_pred             ecCc
Q psy17274        173 FSKS  176 (184)
Q Consensus       173 ~~~~  176 (184)
                      |...
T Consensus       158 Wqqr  161 (166)
T PF15023_consen  158 WQQR  161 (166)
T ss_pred             cccc
Confidence            8643

>KOG2193|consensus

Probab=96.95  E-value=0.00081  Score=53.82  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe-ecCCCCeEEEEecCccccc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH-QLSEQSHLRVSFSKSNIQD  180 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~-~i~g~~~l~v~~~~~~~~~  180 (184)
                      .||++||.+.++..||..+|.... ...+=.++ -..++|||.+.+..-|.+|++.++|. ++.| +++.+.++-++-+.
T Consensus         3 klyignL~p~~~psdl~svfg~ak-~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqG-kr~e~~~sv~kkqr   79 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDAK-IPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQG-KRQEVEHSVPKKQR   79 (584)
T ss_pred             cccccccCCCCChHHHHHHhcccc-CCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcC-ceeeccchhhHHHH
Confidence            489999999999999999998764 21122222 25799999999999999999999998 5678 89999988765433

>KOG0226|consensus

Probab=96.91  E-value=0.00052  Score=51.36  Aligned_cols=52  Identities=13%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             hccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          5 TGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         5 F~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.+|-.-..-++++     +++||+||.|.+++++.+|+..|||.-+..++|.+.-+
T Consensus       211 f~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS  267 (290)
T KOG0226|consen  211 FKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS  267 (290)
T ss_pred             HHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence            44443333344444     47899999999999999999999999998888887543

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=96.85  E-value=0.0031  Score=45.70  Aligned_cols=62  Identities=23%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeEEEEecCccc
Q psy17274        114 EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       114 ~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l~v~~~~~~~  178 (184)
                      .+.|+++|..++ .+.....++ +=+...|.|.+.++|..|...|+  +..+.| ..+++.|+....
T Consensus         9 ~~~l~~l~~~~~-~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g-~~l~~yf~~~~~   72 (184)
T PF04847_consen    9 LAELEELFSTYD-PPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNG-KRLRVYFGQPTP   72 (184)
T ss_dssp             HHHHHHHHHTT--SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETT-EE-EEE----SS
T ss_pred             HHHHHHHHHhcC-CceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCC-CceEEEEccccc
Confidence            478999999999 777776664 66779999999999999999999  999999 799999996543

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=96.84  E-value=0.0018  Score=42.68  Aligned_cols=43  Identities=12%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL   44 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~   44 (184)
                      |.++|+.||.|.-|.+.+ ....|+|.|.++++|+.|++.+.-.
T Consensus        18 iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen   18 IKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             HHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHT
T ss_pred             HHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhc
Confidence            467899999999998765 4478999999999999999877544

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=96.82  E-value=0.003  Score=43.36  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             hhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          3 SLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         3 ~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      .-.+.||+|.+|...  .+-.|.|.|.|..+|.+|+.++.. ...|..+.|.|-.
T Consensus       109 ~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq  160 (166)
T PF15023_consen  109 QRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ  160 (166)
T ss_pred             HHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence            345789999999876  467899999999999999999877 5678888888754

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=96.70  E-value=0.0042  Score=45.05  Aligned_cols=58  Identities=16%  Similarity=0.162  Sum_probs=44.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC--CceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|..|+++.....++ +=+-..|.|.+.++|..|...|+  +..+.|..++|.|+...
T Consensus        12 l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~   71 (184)
T PF04847_consen   12 LEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT   71 (184)
T ss_dssp             HHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred             HHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence            357899999999988776 44779999999999999999999  99999999999998533

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG4574|consensus

Probab=96.59  E-value=0.0019  Score=55.79  Aligned_cols=77  Identities=30%  Similarity=0.406  Sum_probs=64.8

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec--CCCCeEEEEecC
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL--SEQSHLRVSFSK  175 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i--~g~~~l~v~~~~  175 (184)
                      |-.+...+.|.+-+.+..-|..+|+.|| .|.+++.++ +-..|.|+|.+.+.|..|+++|+|.++  -| -+-+|+|++
T Consensus       296 plqp~~~~~nn~v~~tSssL~~l~s~yg-~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g-~Ps~V~~ak  372 (1007)
T KOG4574|consen  296 PLQPKQSLENNAVNLTSSSLATLCSDYG-SVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTG-APSRVSFAK  372 (1007)
T ss_pred             cCcchhhhhcccccchHHHHHHHHHhhc-chhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccC-CceeEEecc
Confidence            3345566777777888999999999999 999987763 678999999999999999999999977  36 389999998


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      .-
T Consensus       373 ~~  374 (1007)
T KOG4574|consen  373 TL  374 (1007)
T ss_pred             cc
Confidence            54

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=96.58  E-value=0.0062  Score=37.95  Aligned_cols=40  Identities=23%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK   43 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g   43 (184)
                      |++||++||.|.=-.|   ....|||...+.+.|..|+..++-
T Consensus        25 I~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen   25 IYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             HHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred             HHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence            5789999999864444   568899999999999999988864

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG4285|consensus

Probab=96.51  E-value=0.0038  Score=47.92  Aligned_cols=55  Identities=15%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s~   57 (184)
                      +.++|++||+|.++.. .++..+-.|.|.+..+|++|| ..||+.+.|.. |=|..+.
T Consensus       213 vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt  268 (350)
T KOG4285|consen  213 VLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT  268 (350)
T ss_pred             HHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence            3579999999998864 367899999999999999999 67999888755 3455433

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=96.46  E-value=0.041  Score=36.49  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQ  166 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~  166 (184)
                      +..+.+...|..++.++|..+.+.+-..|..++|++++   +-.+.++|.+.++|.+=...+||+.+..-
T Consensus        13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl   82 (110)
T PF07576_consen   13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL   82 (110)
T ss_pred             ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence            33445555556666677777767665458888888754   45889999999999999999999998753

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG0112|consensus

Probab=96.25  E-value=0.00089  Score=58.08  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=65.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .+.+|+++||+..+++.+++..|..+| .|..|.|-..    ...+|||.|.+...|..|...+.+..|.. ..+++.|+
T Consensus       371 atrTLf~Gnl~~kl~eseiR~af~e~g-kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~-g~~r~glG  448 (975)
T KOG0112|consen  371 ATRTLFLGNLDSKLTESEIRPAFDESG-KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN-GTHRIGLG  448 (975)
T ss_pred             hhhhhhhcCcccchhhhhhhhhhhhhc-cccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc-Cccccccc
Confidence            478899999999999999999999999 9999987542    24689999999999999999999999987 47777776

>KOG4574|consensus

Probab=96.22  E-value=0.0029  Score=54.73  Aligned_cols=60  Identities=25%  Similarity=0.297  Sum_probs=51.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec--CcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~~~~   61 (184)
                      |..||+.||.|.+++.++ .-..|.|+|.+.+.|..|.++|+|.++.  |-+.+|.+++....
T Consensus       315 L~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~  376 (1007)
T KOG4574|consen  315 LATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM  376 (1007)
T ss_pred             HHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence            457999999999999876 4478999999999999999999999875  88889998875543

>KOG4285|consensus

Probab=96.10  E-value=0.031  Score=43.09  Aligned_cols=62  Identities=15%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQ  166 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~  166 (184)
                      .=+.|.+.|+.-. .-|..+|++|| .|.+. +.+..-++-.|.|.+..+|.+||. -||+.|+|.
T Consensus       198 ~WVTVfGFppg~~-s~vL~~F~~cG-~Vvkh-v~~~ngNwMhirYssr~~A~KALs-kng~ii~g~  259 (350)
T KOG4285|consen  198 TWVTVFGFPPGQV-SIVLNLFSRCG-EVVKH-VTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD  259 (350)
T ss_pred             ceEEEeccCccch-hHHHHHHHhhC-eeeee-ecCCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence            3477888887664 45778999999 88766 344556789999999999999998 699999994

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=96.01  E-value=0.016  Score=41.79  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=51.3

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh-cCCce--eEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecCCC---
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTE-KGFTV--KGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLSEQ---  166 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~-~G~~v--~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~---  166 (184)
                      ...|.|++||+++|++++.+.+++ ++..+  ..+.-...       ....|+|.|.+.++...=...++|+.+-++   
T Consensus         7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~   86 (176)
T PF03467_consen    7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN   86 (176)
T ss_dssp             --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred             CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence            447999999999999999998887 55221  22221111       135799999999999999999999988654   


Q ss_pred             -CeEEEEecCcc
Q psy17274        167 -SHLRVSFSKSN  177 (184)
Q Consensus       167 -~~l~v~~~~~~  177 (184)
                       .+-.|.|+..+
T Consensus        87 ~~~~~VE~Apyq   98 (176)
T PF03467_consen   87 EYPAVVEFAPYQ   98 (176)
T ss_dssp             EEEEEEEE-SS-
T ss_pred             CcceeEEEcchh
Confidence             25667776654

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG2068|consensus

Probab=96.01  E-value=0.0023  Score=49.78  Aligned_cols=74  Identities=11%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             EEEEeCCCCCCCHHHHH---HHHHhcCCceeEEEEccCC--------CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274        102 TLHLSNIPASVTEDELK---EAFTEKGFTVKGFKFFPKD--------RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~---~~F~~~G~~v~~v~v~~~~--------~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      -+|+-+|+..+..+++.   ..|.+|| .|..|.+....        ...++|+|+..++|..||...+|..+.| +.|+
T Consensus        79 lvyvvgl~~~~ade~~l~~~eyfgqyg-ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg-~~lk  156 (327)
T KOG2068|consen   79 LVYVVGLPLDLADESVLERTEYFGQYG-KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG-RALK  156 (327)
T ss_pred             hhhhhCCCccccchhhhhCcccccccc-cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh-hhhH
Confidence            46788888777655543   5688999 88888776421        2358999999999999999999999999 7999


Q ss_pred             EEecCcc
Q psy17274        171 VSFSKSN  177 (184)
Q Consensus       171 v~~~~~~  177 (184)
                      .+|+..+
T Consensus       157 a~~gttk  163 (327)
T KOG2068|consen  157 ASLGTTK  163 (327)
T ss_pred             HhhCCCc
Confidence            9887665

>KOG4849|consensus

Probab=95.94  E-value=0.0087  Score=46.97  Aligned_cols=77  Identities=23%  Similarity=0.320  Sum_probs=64.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++||+||-.-+|++||.+.....|. .+..++++.+     +||||+|...+.....+-++.|--+.|.|+.+..++|-|
T Consensus        82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK  161 (498)
T KOG4849|consen   82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK  161 (498)
T ss_pred             EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence            6899999999999999999888884 4666777652     489999999999999999999999999997677777766


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      ...
T Consensus       162 ~~~  164 (498)
T KOG4849|consen  162 TNQ  164 (498)
T ss_pred             hhH
Confidence            543

>KOG0129|consensus

Probab=95.93  E-value=0.042  Score=45.29  Aligned_cols=59  Identities=15%  Similarity=0.283  Sum_probs=45.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCc---eEEEEeCCHHHHHHHHHHhcC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRK---MALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~---~afV~f~~~~~A~~Ai~~lng  160 (184)
                      ++.+||++||.+++|+.|...|.+|| .+ .|..-.        ..+|   |+|+-|++...-..-+..+.-
T Consensus       259 S~KVFvGGlp~dise~~i~~~F~~FG-s~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~  328 (520)
T KOG0129|consen  259 SRKVFVGGLPWDITEAQINASFGQFG-SV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE  328 (520)
T ss_pred             ccceeecCCCccccHHHHHhhccccc-ce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence            57799999999999999999999999 54 244331        1246   999999998877766665544

>KOG1995|consensus

Probab=95.84  E-value=0.0048  Score=48.42  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             ChhhhccCCCeeE--------EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLR--------VKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~--------v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |++.|.++|.|..        |++.+     ..++-|.|.|.++..|+.|+..+++..|.|.+|+|.++...
T Consensus        83 ~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r  154 (351)
T KOG1995|consen   83 NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR  154 (351)
T ss_pred             HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence            4567888888754        23322     36899999999999999999999999999999999876543

>KOG2135|consensus

Probab=95.83  E-value=0.0057  Score=49.70  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             CEEEEeCCCCCC-CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        101 PTLHLSNIPASV-TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       101 ~~l~v~nlp~~~-t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ..|-+.-.|..+ +..+|..+|.+|| .|..|.+-. +...|.|+|.+..+|.+|-. .++..|++ +.|+|-|-...
T Consensus       373 s~l~lek~~~glnt~a~ln~hfA~fG-~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnn-r~iKl~whnps  446 (526)
T KOG2135|consen  373 SPLALEKSPFGLNTIADLNPHFAQFG-EIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNN-RFIKLFWHNPS  446 (526)
T ss_pred             chhhhhccCCCCchHhhhhhhhhhcC-ccccccccC-chhhheeeeeccccccchhc-cccceecC-ceeEEEEecCC
Confidence            345555555544 5789999999999 999998753 46789999999999988854 79999999 89999997763

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=95.80  E-value=0.018  Score=37.30  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=33.3

Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhCCceec----CcEEEEEEccCc
Q psy17274         20 KKDSALIQMAESHQAHLAMMHMDKLRVF----GKQMRVMISKHQ   59 (184)
Q Consensus        20 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v~~s~~~   59 (184)
                      +.|||||-|.++++|.+-.+.++|..+.    .+...|.||+-+
T Consensus        44 N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ   87 (97)
T PF04059_consen   44 NLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ   87 (97)
T ss_pred             ceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence            6899999999999999999999999885    355667777643

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG1855|consensus

Probab=95.42  E-value=0.0045  Score=49.69  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=38.2

Q ss_pred             ChhhhccCCCeeEEEEeeC------------------CCCeEEEEeCCHHHHHHHHHHhCCcee
Q psy17274          1 MFSLTGVYGDVLRVKILYN------------------KKDSALIQMAESHQAHLAMMHMDKLRV   46 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~   46 (184)
                      |-.||+.+|.|..|+|+.-                  .+-+|+|+|...+.|.+|.+.|+...-
T Consensus       248 l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~  311 (484)
T KOG1855|consen  248 LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQN  311 (484)
T ss_pred             HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhh
Confidence            4579999999999999861                  156799999999999999988866543

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=95.13  E-value=0.14  Score=30.57  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274        110 ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus       110 ~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ..++-++++..+..|+  -.+|.   .++.-=+|.|.+..+|.+|....||+.+.+ ..|..
T Consensus        10 ~~~~v~d~K~~Lr~y~--~~~I~---~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~-y~m~M   65 (66)
T PF11767_consen   10 HGVTVEDFKKRLRKYR--WDRIR---DDRTGFYIVFNDSKEAERCFRAEDGTLFFT-YRMQM   65 (66)
T ss_pred             CCccHHHHHHHHhcCC--cceEE---ecCCEEEEEECChHHHHHHHHhcCCCEEEE-EEEEe
Confidence            4667889999999998  33443   244446899999999999999999999988 56653

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi)

Probab=94.95  E-value=0.054  Score=34.33  Aligned_cols=72  Identities=24%  Similarity=0.280  Sum_probs=44.8

Q ss_pred             EEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCE
Q psy17274         24 ALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPT  102 (184)
Q Consensus        24 afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (184)
                      |+|+|.++.-|++-++.-.- ..+.++.+.|..+.......                   .++.       -....+.++
T Consensus         1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-------------------~k~q-------v~~~vs~rt   54 (88)
T PF07292_consen    1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-------------------QKFQ-------VFSGVSKRT   54 (88)
T ss_pred             CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-------------------eEEE-------EEEcccCCE
Confidence            78999999999998854222 13345666665443111100                   0000       001115678


Q ss_pred             EEEeCCCCCCCHHHHHHHH
Q psy17274        103 LHLSNIPASVTEDELKEAF  121 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F  121 (184)
                      |.|+|||..+++++|++..
T Consensus        55 Vlvsgip~~l~ee~l~D~L   73 (88)
T PF07292_consen   55 VLVSGIPDVLDEEELRDKL   73 (88)
T ss_pred             EEEeCCCCCCChhhheeeE
Confidence            9999999999999999865

This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].

>KOG0804|consensus

Probab=94.07  E-value=0.22  Score=40.68  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQ  166 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~  166 (184)
                      +++.|.|-.+|..+|.-||..++..+-..|..+++++++   +-..+|+|.+-++|..=-..+||..+..-
T Consensus        73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l  143 (493)
T KOG0804|consen   73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL  143 (493)
T ss_pred             CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence            478899999999999999999998876568999998743   45789999999999999999999998753

>KOG4210|consensus

Probab=94.06  E-value=0.021  Score=44.39  Aligned_cols=55  Identities=15%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      +..|..+|.|..|++..     ..+|+|+|.|.+..++..|+.. +...++|+++.+++..
T Consensus       203 ~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  262 (285)
T KOG4210|consen  203 KEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE  262 (285)
T ss_pred             hhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence            45789999999999776     3689999999999999999977 8889999999998776

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=93.89  E-value=0.2  Score=30.59  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=25.6

Q ss_pred             eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274         11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus        11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |-+|.+   ...++||+-... .|..+++.|++..+.|+++.|+.+
T Consensus        33 IG~I~I---~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A   74 (74)
T PF03880_consen   33 IGRIDI---FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA   74 (74)
T ss_dssp             EEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred             EEEEEE---eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence            556776   358899988765 788999999999999999999854

; PDB: 2G0C_A 3MOJ_B.

>KOG2068|consensus

Probab=93.83  E-value=0.03  Score=43.77  Aligned_cols=53  Identities=17%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             hhccCCCeeEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          4 LTGVYGDVLRVKILYNK--------KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         4 lF~~yG~V~~v~~~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      -|.+||.|.+|.+.+..        .--++|+|...++|..||+.-+|+.+.|+.|+..+.
T Consensus       100 yfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g  160 (327)
T KOG2068|consen  100 YFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG  160 (327)
T ss_pred             cccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence            48899999999766511        122799999999999999999999999998777664

>KOG2318|consensus

Probab=93.69  E-value=0.66  Score=39.17  Aligned_cols=78  Identities=21%  Similarity=0.300  Sum_probs=62.8

Q ss_pred             CCCCEEEEeCCC-CCCCHHHHHHHHHhc---CCceeEEEEccC-------------CC----------------------
Q psy17274         98 PPSPTLHLSNIP-ASVTEDELKEAFTEK---GFTVKGFKFFPK-------------DR----------------------  138 (184)
Q Consensus        98 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~---G~~v~~v~v~~~-------------~~----------------------  138 (184)
                      .+++.|-|-||. ..+...||.-+|..|   |+.|.+|.|.|.             ++                      
T Consensus       172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~  251 (650)
T KOG2318|consen  172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE  251 (650)
T ss_pred             cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence            368899999999 689999999998876   447999999761             01                      


Q ss_pred             -----------------ceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEecC
Q psy17274        139 -----------------KMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFSK  175 (184)
Q Consensus       139 -----------------~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~~  175 (184)
                                       -||.|+|++++.|...-..|+|..+..+ -.|-+.|-.
T Consensus       252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP  306 (650)
T KOG2318|consen  252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP  306 (650)
T ss_pred             hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence                             2799999999999999999999999864 355555544

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=93.47  E-value=0.6  Score=28.44  Aligned_cols=60  Identities=13%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHhcCC----ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        110 ASVTEDELKEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       110 ~~~t~~~l~~~F~~~G~----~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ..++..+|..++...+.    .|-.|+|..   .++||+-.. +.|..++..|++..+.| ++++|..+
T Consensus        11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~-~~a~~v~~~l~~~~~~g-k~v~ve~A   74 (74)
T PF03880_consen   11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPE-EVAEKVLEALNGKKIKG-KKVRVERA   74 (74)
T ss_dssp             GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-T-T-HHHHHHHHTT--SSS-----EEE-
T ss_pred             cCCCHHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECH-HHHHHHHHHhcCCCCCC-eeEEEEEC
Confidence            67888889888877751    256677764   578888765 47999999999999999 89998753

; PDB: 2G0C_A 3MOJ_B.

>KOG3152|consensus

Probab=93.30  E-value=0.024  Score=42.70  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             ChhhhccCCCeeEEEEeeC-----------CC------CeEEEEeCCHHHHHHHHHHhCCceecCcE
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----------KK------DSALIQMAESHQAHLAMMHMDKLRVFGKQ   50 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----------~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   50 (184)
                      |.++++.||.|-+|-+...           .+      .-|+|+|.+...|.+..+.|||..+.|++
T Consensus        91 lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk  157 (278)
T KOG3152|consen   91 LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK  157 (278)
T ss_pred             HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence            4689999999999987651           01      12789999999999999999999999865

>KOG2135|consensus

Probab=92.62  E-value=0.069  Score=43.66  Aligned_cols=57  Identities=9%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |-..|.+||.|..|.+-.. .--|.|+|.+..+|-.|- ...+..|.+|.|+|.|.+..
T Consensus       390 ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps  446 (526)
T KOG2135|consen  390 LNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS  446 (526)
T ss_pred             hhhhhhhcCccccccccCc-hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence            3467999999999987554 567999999999997776 67899999999999998754

>KOG2591|consensus

Probab=92.38  E-value=0.97  Score=38.07  Aligned_cols=60  Identities=17%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH  161 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~  161 (184)
                      -+++.|.-+|.+...|+++.||..-.. ++.++.+-  ....=||+|++..||..|.+.|...
T Consensus       175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylree  235 (684)
T KOG2591|consen  175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREE  235 (684)
T ss_pred             eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHH
Confidence            355778999999999999999987331 67777654  2344599999999999998877543

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=92.30  E-value=0.26  Score=29.48  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             EEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274         24 ALIQMAESHQAHLAMMHMDKLRVFGKQMRV   53 (184)
Q Consensus        24 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v   53 (184)
                      =||.|.+.++|+++....+|..+++..|..
T Consensus        36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M   65 (66)
T PF11767_consen   36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM   65 (66)
T ss_pred             EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence            479999999999999999999999887754

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>KOG2253|consensus

Probab=91.96  E-value=0.12  Score=43.88  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      |.-++||+|+-..++.+-++.+...+| .|-+.+..    .+||++|..+.-+..|+..++-..++|+ .+-
T Consensus        39 ~~~~vfv~~~~~~~s~~~~~~il~~~g-~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~-kl~  104 (668)
T KOG2253|consen   39 PRDTVFVGNISYLVSQEFWKSILAKSG-FVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQ-KLI  104 (668)
T ss_pred             CCceeEecchhhhhhHHHHHHHHhhCC-cchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcc-hhh
Confidence            567899999999999999999999999 66655433    2999999999999999999999999984 543

>KOG4019|consensus

Probab=90.88  E-value=0.33  Score=34.87  Aligned_cols=77  Identities=14%  Similarity=0.288  Sum_probs=55.7

Q ss_pred             EEEeCCCCCC-----CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-eEEEEecCc
Q psy17274        103 LHLSNIPASV-----TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQS-HLRVSFSKS  176 (184)
Q Consensus       103 l~v~nlp~~~-----t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~l~v~~~~~  176 (184)
                      +.+-+++..+     ......++|.+|. +.....++ ++.+..-|-|.+++.|..|...++++.+.| + .++.-|+..
T Consensus        13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n-~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~-~~~~k~yfaQ~   89 (193)
T KOG4019|consen   13 IIACDIHEEVFVNREDKALFENLFRQIN-EDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNG-KNELKLYFAQP   89 (193)
T ss_pred             eeeecccHHhhccHHHHHHHHhHHhhhC-cchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCC-CceEEEEEccC
Confidence            4555555433     2334456777777 55445555 356677889999999999999999999999 7 899988887


Q ss_pred             cccccc
Q psy17274        177 NIQDIR  182 (184)
Q Consensus       177 ~~~~~~  182 (184)
                      .+...+
T Consensus        90 ~~~~~~   95 (193)
T KOG4019|consen   90 GHPESN   95 (193)
T ss_pred             CCcccc
Confidence            766554

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=89.18  E-value=1.2  Score=29.49  Aligned_cols=38  Identities=11%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             eeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecC
Q psy17274         11 VLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFG   48 (184)
Q Consensus        11 V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   48 (184)
                      |..+++++.   ++-.+++.|.+.++|..-.+.+||+.|..
T Consensus        41 i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   41 IEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             EEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            556777773   34579999999999999999999998853

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>PRK10629 EnvZ/OmpR regulon moderator; Provisional

Probab=87.65  E-value=6.9  Score=26.65  Aligned_cols=73  Identities=12%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             CCCEEEEeCCCCC---CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPAS---VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~---~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ....|.|+....+   .+-..+.+....-|..+.++..   ..+...|.|++.++..+|.+.|...--.+ ..+.+..+.
T Consensus        34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~---~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~-y~VAlnl~p  109 (127)
T PRK10629         34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP---ENDSLLIRFDSPEQSAAAKEVLDRTLPHG-YIIAQQDDN  109 (127)
T ss_pred             CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe---eCCEEEEEECCHHHHHHHHHHHHHHcCCC-CEEEEecCC
Confidence            4567888876433   5677888999999966666643   44688999999999999999999888777 788888777

>KOG4483|consensus

Probab=83.88  E-value=3  Score=33.87  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ  157 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~  157 (184)
                      -.+|-|.|.|...--+||...|+.|+..=.+|+.+  ....||-.|.+...|..|+..
T Consensus       391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~  446 (528)
T KOG4483|consen  391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL  446 (528)
T ss_pred             cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence            36789999999998899999999998433456555  557899999999999999885

>COG5638 Uncharacterized conserved protein [Function unknown]

Probab=82.39  E-value=14  Score=30.35  Aligned_cols=78  Identities=21%  Similarity=0.350  Sum_probs=60.5

Q ss_pred             CCCEEEEeCCC-CCCCHHHHHHHHHhc---CCceeEEEEccC--------------------------------------
Q psy17274         99 PSPTLHLSNIP-ASVTEDELKEAFTEK---GFTVKGFKFFPK--------------------------------------  136 (184)
Q Consensus        99 ~~~~l~v~nlp-~~~t~~~l~~~F~~~---G~~v~~v~v~~~--------------------------------------  136 (184)
                      +++.|-|-||+ ..+...+|.-+|+.|   |+.+.+|.|.|.                                      
T Consensus       145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~  224 (622)
T COG5638         145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF  224 (622)
T ss_pred             cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence            78889999999 688999999888764   557888887650                                      


Q ss_pred             -------------CC-------------------ceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEecCc
Q psy17274        137 -------------DR-------------------KMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFSKS  176 (184)
Q Consensus       137 -------------~~-------------------~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~~~  176 (184)
                                   ..                   -+|.|++++.+.+......++|..+..+ ..+.+.|...
T Consensus       225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD  297 (622)
T COG5638         225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD  297 (622)
T ss_pred             hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence                         01                   1689999999999999999999999864 3555555443

>KOG2416|consensus

Probab=82.12  E-value=0.49  Score=40.05  Aligned_cols=52  Identities=10%  Similarity=0.072  Sum_probs=40.3

Q ss_pred             cCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCc
Q psy17274          7 VYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQ   59 (184)
Q Consensus         7 ~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~   59 (184)
                      ..|.|...+| -.-+.-|||.|.+.++|.....+|+|..+.   ++.|.+.|....
T Consensus       468 tgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d  522 (718)
T KOG2416|consen  468 TGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD  522 (718)
T ss_pred             ccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence            4666666542 223567999999999999999999999884   578999987644

>PRK14548 50S ribosomal protein L23P; Provisional

Probab=81.94  E-value=9.3  Score=23.99  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=43.0

Q ss_pred             EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHH
Q psy17274        103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQ  157 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~  157 (184)
                      -|..-++...+..++++.++. ||..|.+|.....  +..-|+|.+..-.+|.+....
T Consensus        23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k   80 (84)
T PRK14548         23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR   80 (84)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence            556668899999999999988 6877888876542  345799999998888887554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2adc_A	229	Solution Structure Of Polypyrimidine Tract Binding		5e-68
1qm9_A	198	Nmr, Representative Structure Length = 198		5e-68
3tyt_A	205	Crystal Structure Of A Heterogeneous Nuclear Ribonu		7e-15
3to8_A	218	Crystal Structure Of The Two C-Terminal Rrm Domains		6e-14
3s01_A	212	Crystal Structure Of A Heterogeneous Nuclear Ribonu		4e-12
3sde_B	261	Crystal Structure Of A Paraspeckle-Protein Heterodi		1e-04

>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein Rbd34 Complexed With Cucucu Rna Length = 229

Iteration: 1
 Score =  253 bits (646), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 145/178 (81%)
Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 52  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111
Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK  
Sbjct: 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 171
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 172 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229

>pdb|1QM9|A Chain A, Nmr, Representative Structure Length = 198

Iteration: 1
 Score =  253 bits (645), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 145/178 (81%)
Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 21  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80
Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK  
Sbjct: 81  VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 141 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198

>pdb|3TYT|A Chain A, Crystal Structure Of A Heterogeneous Nuclear Ribonucleoprotein L (Hnrpl) From Mus Musculus At 1.60 A Resolution Length = 205

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F++  +YG+V +VK + +K  +A+++MA+ +    A+ H++   +FG++M V +SK  A
Sbjct: 22  VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81
Query: 61  VQLPKE--GQPDAGLT-KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL 117
           + +P +  G  D   + KD++ S  +RF  P       I  PS  LH  N P  VTE+  
Sbjct: 82  I-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 140
Query: 118 KEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL 163
            E   E G     +VK F    +     LL+ DS  +A+  L  ++++Q+
Sbjct: 141 FEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190

>pdb|3TO8|A Chain A, Crystal Structure Of The Two C-Terminal Rrm Domains Of Heterogeneous Nuclear Ribonucleoprotein L (Hnrnp L) Length = 218

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F++  +YG+V +VK + +K  +A+++MA+ +    A+ H++   +FG+++ V +SK  A
Sbjct: 28  VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA 87
Query: 61  VQLPKE--GQPDAGLT-KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL 117
           + +P +  G  D   + KD++ S  +RF  P       I  PS  LH  N P  VTE+  
Sbjct: 88  I-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 146
Query: 118 KEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL 163
            E   E G     +VK F    +     LL+ +S  +A+  L  ++++Q+
Sbjct: 147 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 196

>pdb|3S01|A Chain A, Crystal Structure Of A Heterogeneous Nuclear Ribonucleoprotein L (Hnrpl) From Mus Musculus At 2.15 A Resolution Length = 212

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 6/168 (3%)
Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F++  +YG+V +VK   +K  +A ++ A+ +    A+ H++    FG++  V +SK  A
Sbjct: 22  VFNVFCLYGNVEKVKFXKSKPGAAXVEXADGYAVDRAITHLNNNFXFGQKXNVCVSKQPA 81
Query: 61  VQLPKE-GQPDAGLT-KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
           +   +  G  D   + KD++ S  +RF  P       I  PS  LH  N P  VTE+   
Sbjct: 82  IXPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141
Query: 119 EAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
           E   E G     +VK F    +     LL+ DS  +A+  L  ++++Q
Sbjct: 142 EICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189

>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer, Pspc1NONO Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 72  GLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF 131
           GLT D     L  F+KPG K F         L + N+P  +TE+E+++ F + G    G 
Sbjct: 3   GLTID-----LKNFRKPGEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKA--GE 51
Query: 132 KFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
            F  KD+    ++L++   A  A +++ N  L  +  LRV F+
Sbjct: 52  VFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFA 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	7e-65
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	3e-07
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	5e-63
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	1e-44
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	3e-08
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	1e-17
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	6e-16
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	8e-06
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	3e-13
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-12
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	3e-12
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	4e-12
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	6e-11
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	3e-05
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-10
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	4e-10
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	8e-10
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	1e-09
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	3e-05
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-09
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-04
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	4e-09
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	6e-09
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	7e-09
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	1e-08
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	4e-07
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	1e-08
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	1e-08
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	3e-08
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	3e-08
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	4e-08
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	4e-08
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	4e-08
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	4e-08
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	5e-08
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	2e-07
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	2e-07
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	2e-07
2dis_A	109	Unnamed protein product; structural genomics, RRM	2e-07
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	3e-07
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	4e-07
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	5e-07
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	5e-07
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	6e-07
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	6e-07
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	6e-07
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	7e-07
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	7e-07
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	7e-07
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	7e-07
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	8e-07
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	8e-07
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	8e-07
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	9e-07
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	1e-05
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	1e-06
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	2e-06
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-06
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	2e-06
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	3e-06
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	3e-05
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	4e-06
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	4e-06
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	4e-06
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	4e-06
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	5e-06
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	9e-06
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	9e-06
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	1e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	2e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	9e-05
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	1e-05
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	1e-05
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	1e-05
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	2e-05
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	2e-05
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	2e-05
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	2e-05
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	2e-05
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	2e-05
1x5p_A	97	Negative elongation factor E; structure genomics,	3e-05
1x5p_A	97	Negative elongation factor E; structure genomics,	9e-04
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	3e-05
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	3e-05
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	4e-05
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	4e-05
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	4e-05
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	5e-05
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	5e-05
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	6e-05
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	7e-05
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	7e-05
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	8e-05
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	5e-04
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	8e-05
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	8e-05
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	9e-05
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	1e-04
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	1e-04
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	1e-04
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	1e-04
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	1e-04
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	1e-04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	2e-04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	6e-04
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	2e-04
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	3e-04
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	2e-04
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-04
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	2e-04
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	2e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	3e-04
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	3e-04
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	3e-04
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	3e-04
1x5o_A	114	RNA binding motif, single-stranded interacting pro	3e-04
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	4e-04
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	4e-04
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	5e-04
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	6e-04
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	6e-04
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	6e-04
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	6e-04
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	7e-04
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	7e-04
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	7e-04
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	7e-04
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	7e-04
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	8e-04

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score =  197 bits (501), Expect = 7e-65
 Identities = 120/178 (67%), Positives = 145/178 (81%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 21  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK  
Sbjct: 81  VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 141 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 100 SPTLHLSNI-PASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
           +  L +SN+ P  VT   L   F   G  V+  K     ++ AL+Q+    +A  A+  +
Sbjct: 3   NSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHL 61

Query: 159 HNHQLSEQSHLRVSFSKSN 177
           + H+L  +  +R++ SK  
Sbjct: 62  NGHKLHGKP-IRITLSKHQ 79

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score =  193 bits (492), Expect = 5e-63
 Identities = 120/178 (67%), Positives = 145/178 (81%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 52  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
           VQLP+EGQ D GLTKDY  SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK  
Sbjct: 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 171

Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
           F+  G  VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 172 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score =  145 bits (367), Expect = 1e-44
 Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 11/184 (5%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F++  +YG+V +VK + +K  +A+++MA+ +    A+ H++   +FG++M V +SK  A
Sbjct: 22  VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81

Query: 61  VQLPKEGQPDAG--LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
           +   +    + G    KD++ S  +RF  P       I  PS  LH  N P  VTE+   
Sbjct: 82  IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141

Query: 119 EAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQS-----HL 169
           E   E G     +VK F    +     LL+ DS  +A+  L  ++++Q+   +      L
Sbjct: 142 EICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201

Query: 170 RVSF 173
           ++ F
Sbjct: 202 KLCF 205

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 98  PPSPTLHLSNI-PASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
             SP L +  +  + +  D +   F   G  V+  KF       A++++        A+ 
Sbjct: 2   ADSPVLMVYGLDQSKMNCDRVFNVFCLYG-NVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60

Query: 157 QMHNHQLSEQSHLRVSFSKSNIQDIRDN 184
            ++N+ +  Q  + V  SK        +
Sbjct: 61  HLNNNFMFGQK-MNVCVSKQPAIMPGQS 87

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 72.9 bits (179), Expect = 1e-17
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 80  SPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK 139
              H        +     P SP +H+  +   V E +L EA  E G  +      P  ++
Sbjct: 2   GHHHHHHMENYDDPHKT-PASPVVHIRGLIDGVVEADLVEALQEFG-PISYVVVMP-KKR 58

Query: 140 MALLQLDSIEEAITALIQMHNHQLSEQSH-LRVSFSKS 176
            AL++ + +  A  A+    ++Q+    H   V++S S
Sbjct: 59  QALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 68.7 bits (168), Expect = 6e-16
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147
            GS    +    SP +H+  +  SV E +L EA  + G T+      P  ++ AL++ ++
Sbjct: 3   SGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMP-FKRQALVEFEN 60

Query: 148 IEEAITALIQMHNHQLSEQSH-LRVSFSKSN 177
           I+ A   +    +  +         ++S S 
Sbjct: 61  IDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 8   YGDVLRVKILYNKKDSALIQMAESHQAHLAM--MHMDKLRVFGKQMRVMISKHQAVQLPK 65
           +G +  V ++  K+  AL++      A   +       + + G+Q     S  + +  P 
Sbjct: 39  FGTICYVMMMPFKR-QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPG 97

Query: 66  EGQPDAG 72
              P +G
Sbjct: 98  NSGPSSG 104

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148
           GS   +    PS  LH+  +P  VTE E+       G  V         +  A L+L + 
Sbjct: 4   GSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLK-GKNQAFLELATE 61

Query: 149 EEAITALIQMHNHQLSEQSH-LRVSFSKS 176
           E AIT +          ++  + + +S  
Sbjct: 62  EAAITMVNYYSAVTPHLRNQPIYIQYSNH 90

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 74  TKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKF 133
              +  S     +     + ++   PS  +H+  +P  VTE E+       G  V     
Sbjct: 5   HHHHHHSSGLVPRGSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLM 63

Query: 134 FPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH-LRVSFSKS 176
             K +  A +++++ E A T +    +     +   + + FS  
Sbjct: 64  L-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQL 145
           +     +      PS  +H+  +P  VTE E+       G  V       K +  A +++
Sbjct: 2   RGSHHHHHHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLL-MLKGKNQAFIEM 59

Query: 146 DSIEEAITALIQMHNHQLSEQSH-LRVSFSKS 176
           ++ E A T +    +     +   + + FS  
Sbjct: 60  NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
            P+  L +  +  + +   L   F   G +++      K    A +Q +S++ A  A  +
Sbjct: 15  NPTTRLWVGGLGPNTSLAALAREFDRFG-SIRTID-HVKGDSFAYIQYESLDAAQAACAK 72

Query: 158 MHNHQLSEQSH-LRVSFSKSN 177
           M    L      LRV F+KS 
Sbjct: 73  MRGFPLGGPDRRLRVDFAKSG 93

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 32/187 (17%)

Query: 1   MFSLTGVYGDV--LRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53
            F+     G +       +   + +     A ++     +   AM   D +   G+ +++
Sbjct: 24  FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSLKI 82

Query: 54  MISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVT 113
                   + P + QP  G++++ +             +   ++       +  +P  + 
Sbjct: 83  --------RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLF-------IGGLPNYLN 127

Query: 114 EDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEAITALIQMHNHQLSEQS 167
           +D++KE  T  G  +K F    KD         A  +   I     A+  ++  QL ++ 
Sbjct: 128 DDQVKELLTSFG-PLKAFN-LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK- 184

Query: 168 HLRVSFS 174
            L V  +
Sbjct: 185 KLLVQRA 191

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----------KDRKMALLQLDSIEEA 151
            L++ NIP  +TE+ + + F  +   + G    P          +D+  A L+  S++E 
Sbjct: 6   RLYVGNIPFGITEEAMMDFFNAQM-RLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             A +         QS L++    
Sbjct: 65  TQA-MAFDGIIFQGQS-LKIRRPH 86

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 58.0 bits (139), Expect = 1e-10
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 62  QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAF 121
            +P  G     +             +       +  PP+  L L+N+P    E  L   F
Sbjct: 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF 228

Query: 122 TEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
            +     K  +  P    +A ++ D+  +A  A   +   ++++ + +++SF+K
Sbjct: 229 NQFP-GFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTE--KGF-TVKGFKFF--PKDRKMALLQLDSIEEAI 152
            P+ T++++N+   + +DELK++       F  +         K R  A +    +  A 
Sbjct: 7   RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSAT 66

Query: 153 TALIQMHNHQLSEQSHLRVSFSKSN 177
            AL  M      +   +R+ ++K++
Sbjct: 67  NALRSMQGFPFYD-KPMRIQYAKTD 90

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 52/185 (28%)

Query: 8   YGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ 62
           +G +  + + ++         A ++      A LA+  M+ + + G+ ++V   +     
Sbjct: 52  FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG--RPSN-- 107

Query: 63  LPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFT 122
              + QP                    ++ F  IY       ++++   +++D++K  F 
Sbjct: 108 -IGQAQPII------------DQLAEEARAFNRIY-------VASVHQDLSDDDIKSVFE 147

Query: 123 EKGFTV-------------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL 169
             G                KG+ F         ++ +  + +  A+  M+   L  Q  L
Sbjct: 148 AFGKIKSATLARDPTTGKHKGYGF---------IEYEKAQSSQDAVSSMNLFDLGGQY-L 197

Query: 170 RVSFS 174
           RV  +
Sbjct: 198 RVGKA 202

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 53.5 bits (128), Expect = 8e-10
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 98  PPSPTLHLS--NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
             SP L +   N+   VT D L + F++ G  +K   F   ++  ALLQ      A  A 
Sbjct: 24  GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 83

Query: 156 IQMHNHQLSEQSH-LRVSFSKSNIQDIRDN 184
           + +    +      LR+ FSK    +++ N
Sbjct: 84  LSLDGQNIYNACCTLRIDFSKLTSLNVKYN 113

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 12/91 (13%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 91  KNFQNIYPPSP----TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
             F+++   S     T++   I + +T+  +++ F+  G  +   +    ++  + ++  
Sbjct: 12  LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIR-VFPEKGYSFVRFS 69

Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
           + E A  A++ ++   + E   ++  + K +
Sbjct: 70  THESAAHAIVSVNGTTI-EGHVVKCYWGKES 99

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 8/65 (12%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 8   YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG 67
           +G ++ +++ + +K  + ++ +    A  A++ ++   + G  ++    K          
Sbjct: 49  FGQIMEIRV-FPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP---DMTS 104

Query: 68  QPDAG 72
            P +G
Sbjct: 105 GPSSG 109

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 91  KNFQNIYPPSP----TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
           +   +I   +P    T ++ NIP   TE +L   F   G  +  FK    ++    ++ D
Sbjct: 14  QAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFG-FILDFK-HYPEKGCCFIKYD 71

Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           + E+A   ++ + N     ++ LR  + K 
Sbjct: 72  THEQAAVCIVALANFPFQGRN-LRTGWGKE 100

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 8   YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59
           +G +L  K    K     I+     QA + ++ +      G+ +R    K +
Sbjct: 51  FGFILDFKHYPEKG-CCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MAL 142
            GS    +  P    + + N+P +V+ DE+ + F               + K      A+
Sbjct: 3   SGSSGSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAM 61

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           +  +S +EA  A+I +++  +  +  +++S   S
Sbjct: 62  VAFESRDEATAAVIDLNDRPIGSR-KVKLSGPSS 94

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 98  PPSPTLHLS--NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
             SP L +   N+   VT D L + F++ G  +K   F   ++  ALLQ      A  A 
Sbjct: 42  GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 101

Query: 156 IQMHNHQLSEQSH-LRVSFSKSNIQDIRDN 184
           + +    +      LR+ FSK    +++ N
Sbjct: 102 LSLDGQNIYNACCTLRIDFSKLTSLNVKYN 131

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 49.6 bits (119), Expect = 7e-09
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
           TL++  +  ++TE +L+  F + G  ++        ++ A +Q  + + A  A  +  N 
Sbjct: 14  TLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNK 71

Query: 162 QLSEQSHLRVSFSK 175
            +     L V + +
Sbjct: 72  LIVNGRRLNVKWGR 85

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGK--QMRVMISKH 58
           ++++    G V R+ I       A+++      A  A   ++   ++     +++  ++ 
Sbjct: 42  LYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101

Query: 59  QAVQLPKEGQPDAGLTKDYTASPLHR 84
             + + +        + DYT   L R
Sbjct: 102 TRLNVIRNDND----SWDYTKPYLGR 123

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 79  ASPLHRFKKPGSKNFQNIYPPSPTLHLS--NIPASVTEDELKEAFTEKGFTVKGFKFFPK 136
            S   R  +PG+ +  +    +  L LS  N    +T D L       G  V+    F +
Sbjct: 4   GSSGKRITRPGNTDDPS--GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK-VQRIVIFKR 60

Query: 137 DRKMALLQLDSIEEAITALIQMHNHQLSEQSH-LRVSFSKSNIQDIRDN 184
           +   A+++ +S+  A  A   ++   +      L++ +++    ++  N
Sbjct: 61  NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRN 109

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147
            GS   +  +     L + N+P  +TE+E+++ F + G   +   F  KD+    ++L++
Sbjct: 3   SGSSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--VFIHKDKGFGFIRLET 60

Query: 148 IEEAITALIQMHNHQLSEQSHLRVSFSKS 176
              A  A +++ N  L  +  LRV F+  
Sbjct: 61  RTLAEIAKVELDNMPLRGKQ-LRVRFACH 88

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MAL 142
            GS    +  P    + + N+P +V+ DE+ + F               + K      A+
Sbjct: 3   SGSSGASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAM 61

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           +  +S +EA  A+I +++  +  +  +++     
Sbjct: 62  VAFESRDEATAAVIDLNDRPIGSR-KVKLVLGSG 94

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           P +  +++ N+P      +LK A  E G +V     +   R+ A L       A  A+  
Sbjct: 17  PLAADVYVGNLPRDARVSDLKRALRELG-SVPLRLTWQGPRRRAFLHYPDSAAAQQAVSC 75

Query: 158 MHNHQLSEQSHLRVSFSKS 176
           +   +L   + LRV+ ++ 
Sbjct: 76  LQGLRLGTDT-LRVALARQ 93

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 66/192 (34%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55
           +F      G +   +I+ + K       A +       +  A+  ++ + V  K+++V  
Sbjct: 23  LFR---AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79

Query: 56  SKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTED 115
           +     +   E   D                        N+Y       ++N+P ++T+D
Sbjct: 80  A-----RPGGESIKDT-----------------------NLY-------VTNLPRTITDD 104

Query: 116 ELKEAFTEKGFTV-------------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
           +L   F + G  V             +G  F         ++ +  EEA  A+  ++N  
Sbjct: 105 QLDTIFGKYGSIVQKNILRDKLTGRPRGVAF---------VRYNKREEAQEAISALNNVI 155

Query: 163 LSEQSH-LRVSF 173
               S  L V  
Sbjct: 156 PEGGSQPLSVRL 167

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.0 bits (115), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 87  KPGSKNFQNIYPPSP-TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----M 140
              S  F+         L +S +P S T++EL+E     G TVK  +    +R      +
Sbjct: 3   SGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHG-TVKDLR-LVTNRAGKPKGL 60

Query: 141 ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           A ++ ++  +A  A+++M    + E   ++V+ S S
Sbjct: 61  AYVEYENESQASQAVMKMDGMTIKENI-IKVAISNS 95

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159
           S  + + N+P      E+ +   +         +  ++++ A + L + E+A  A+   H
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLKY---CYVDRNKRTAFVTLLNGEQAQNAIQMFH 61

Query: 160 NHQLSEQSHLRVSFSKSN 177
            +    +  L V    ++
Sbjct: 62  QYSFRGK-DLIVQLQPTD 78

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 48.0 bits (115), Expect = 4e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 97  YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEE 150
                 L ++ +    TE+++ + F E G  +K       DR+        L++ ++ +E
Sbjct: 20  SVEGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIH-LNLDRRTGYLKGYTLVEYETYKE 77

Query: 151 AITALIQMHNHQLSEQSHLRVSFSK 175
           A  A+  ++   L  Q  + V +  
Sbjct: 78  AQAAMEGLNGQDLMGQP-ISVDWCF 101

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 97  YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEE 150
                 L ++ +    TE+++ + F E G  +K       DR+        L++ ++ +E
Sbjct: 19  SVEGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIH-LNLDRRTGYLKGYTLVEYETYKE 76

Query: 151 AITALIQMHNHQLSEQSHLRVSFSK 175
           A  A+  ++   L  Q  + V +  
Sbjct: 77  AQAAMEGLNGQDLMGQP-ISVDWCF 100

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 78  TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPK 136
           + S   + +    + F         +HLSN+P S  ++  + +     G  +K +     
Sbjct: 3   SGSSGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILMRM 61

Query: 137 DRKMALLQLDSIEEAITALIQMHNHQLSEQSH-LRVSFSKS 176
            +  A +++++ E+A+  +       L  Q   ++V  S+ 
Sbjct: 62  -KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 97  YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEE 150
                 L +++I     EDE++E F + G  +K       DR+       AL++ ++ ++
Sbjct: 23  SVEGWILFVTSIHEEAQEDEIQEKFCDYG-EIKNIH-LNLDRRTGFSKGYALVEYETHKQ 80

Query: 151 AITALIQMHNHQLSEQSHLRVSFSK 175
           A+ A   ++  ++  Q+ ++V +  
Sbjct: 81  ALAAKEALNGAEIMGQT-IQVDWCF 104

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 66/192 (34%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55
           +F      G++   K++ +K          +   +   A  A+  ++ LR+  K ++V  
Sbjct: 22  LFG---SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78

Query: 56  SKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTED 115
           ++      P                              N+Y       +S +P ++T+ 
Sbjct: 79  AR------PSSASIRDA----------------------NLY-------VSGLPKTMTQK 103

Query: 116 ELKEAFTEKGFTV-------------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
           EL++ F++ G  +             +G  F         ++ D   EA  A+  ++  +
Sbjct: 104 ELEQLFSQYGRIITSRILVDQVTGVSRGVGF---------IRFDKRIEAEEAIKGLNGQK 154

Query: 163 LSEQSH-LRVSF 173
            S  +  + V F
Sbjct: 155 PSGATEPITVKF 166

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR--KMALLQLDSIEEAITALIQMH 159
            L + NIP  +  + L     + G  V+  +    D    +  +   S ++A  AL +++
Sbjct: 17  KLQIRNIPPHLQWEVLDSLLVQYG-VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN 75

Query: 160 NHQLSEQSHLRVSFSKSN 177
             QL E   L+V++    
Sbjct: 76  GFQL-ENFTLKVAYIPDE 92

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 7/81 (8%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEAITAL 155
            L +  IP     +E+ E   +    V     +            A ++ +S   A  A 
Sbjct: 10  RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 69

Query: 156 IQMHNHQLSEQSH-LRVSFSK 175
            ++   ++    H + V +++
Sbjct: 70  RKLMPGRIQLWGHQIAVDWAE 90

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 21/181 (11%), Positives = 55/181 (30%), Gaps = 58/181 (32%)

Query: 8   YGDVLRVKILYNKKDS----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL 63
                 + ++  +  +      +    +     A+  +  L+VFG ++++   K      
Sbjct: 37  LFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK------ 89

Query: 64  PKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTE 123
                                      +  + +          N+  ++TEDELKE F +
Sbjct: 90  --------------------GRDSKKVRAARTLL-------AKNLSFNITEDELKEVFED 122

Query: 124 KGFTV---------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
               +         KG  +         ++  S  +A   L +    ++  +S + + ++
Sbjct: 123 AL-EIRLVSQDGKSKGIAY---------IEFKSEADAEKNLEEKQGAEIDGRS-VSLYYT 171

Query: 175 K 175
            
Sbjct: 172 G 172

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 99  PSPTLHL----SNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITA 154
              T  L      +   V+ ++L     + G  V      P ++  +  +  + EE+  A
Sbjct: 22  SYATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-NKPYSFARYRTTEESKRA 79

Query: 155 LIQMHNHQLSEQSHLRVSF 173
            + ++  ++ +    +++ 
Sbjct: 80  YVTLNGKEVVDDLGQKITL 98

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
            +   N+PA     E++E F+  G ++      P+    A+++     EA  A   +   
Sbjct: 12  VILAKNLPAGTLAAEIQETFSRFG-SLGRVL-LPEGGITAIVEFLEPLEARKAFRHLAYS 69

Query: 162 QLSEQSHLRVSFSKSNI 178
           +      L + ++   +
Sbjct: 70  KF-HHVPLYLEWAPIGV 85

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRK------MALLQLDSIEE 150
               T+ L NI      D +  A +      V   +   KD++       A +QL S  +
Sbjct: 7   HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR-LIKDKQTQQNRGFAFVQLSSAMD 65

Query: 151 AITALIQMHNHQLSEQ---SHLRVSFSKS 176
           A   L  + +     +     + V F+KS
Sbjct: 66  ASQLLQILQSLHPPLKIDGKTIGVDFAKS 94

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 98  PPSPTLHLSNIPASVTEDELKEA----FTEKGFTVKGFKFFPKDRKM---ALLQLDSIEE 150
            P+ T++++N+   + +DELK++    F+  G  +       +  KM   A +    +  
Sbjct: 6   RPNHTIYINNLNEKIKKDELKKSLHAIFSRFG-QILDIL-VSRSLKMRGQAFVIFKEVSS 63

Query: 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177
           A  AL  M      ++  +R+ ++K++
Sbjct: 64  ATNALRSMQGFPFYDK-PMRIQYAKTD 89

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-------MALLQLDSIEE 150
                +H+  +  +VT+D + E F+  G  +K     P +R         A ++ ++ +E
Sbjct: 2   MKPTKVHIGRLTRNVTKDHIMEIFSTYG-KIKMID-MPVERMHPHLSKGYAYVEFENPDE 59

Query: 151 AITALIQMHNHQLSEQSHLRVSFSK 175
           A  AL  M   Q+  Q  +  +   
Sbjct: 60  AEKALKHMDGGQIDGQE-ITATAVL 83

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR---KM-- 140
           K P   ++     P+  L+L N+   VTE +L   F       KG           +M  
Sbjct: 12  KIPMFSSYNPG-EPNKVLYLKNLSPRVTERDLVSLFARFQ-EKKGPP-IQFRMMTGRMRG 68

Query: 141 -ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
            A +   + E A  AL  ++ ++L  +  L + F K+
Sbjct: 69  QAFITFPNKEIAWQALHLVNGYKLYGKI-LVIEFGKN 104

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-------ALLQLDSIEE 150
             +  + + NIP    + E++E F+  G  +K  +  PK             +   + ++
Sbjct: 13  QTTSKILVRNIPFQANQREIRELFSTFG-ELKTVR-LPKKMTGTGAHRGFGFVDFITKQD 70

Query: 151 AITALIQMHNHQLSEQSHLRVSFSKS 176
           A  A   + +        L + ++ S
Sbjct: 71  AKKAFNALCHSTHLYGRRLVLEWADS 96

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKG---------FKFFPKDRKMALLQLDSIEEAIT 153
           L++ NIP  +TE+ + + F  +                    +D+  A L+  S++E   
Sbjct: 9   LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 68

Query: 154 AL----IQMHNHQL 163
           A+    I      L
Sbjct: 69  AMAFDGIIFQGQSL 82

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 79  ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKD 137
            S          ++++    P+  +++ N+   V E +LK  F     F+ +  +     
Sbjct: 25  ISREEMETLSVFRSYEPG-EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDI 83

Query: 138 RKM--------ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           R M        A + L + + A  AL + + + L  +  + V F++S
Sbjct: 84  RLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK-PMVVQFARS 129

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MAL 142
            GS    ++       H++NIP S+T+ ++ +         +       D        AL
Sbjct: 3   SGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQAL 61

Query: 143 LQLDSIEEAITALIQMHNHQL 163
           +Q  + ++A  +  ++H  +L
Sbjct: 62  VQFKNEDDARKSE-RLHRKKL 81

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 25/190 (13%), Positives = 69/190 (36%), Gaps = 60/190 (31%)

Query: 2   FSLTGVYGDVLRVKILYNKKDSAL----IQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
                V G +  +KI+ +K +  +    ++  +SH A++A+  ++  ++    +++  + 
Sbjct: 18  KQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA- 76

Query: 58  HQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL 117
                           + D T                N++       + ++  +V ++ L
Sbjct: 77  ----------FQSQQSSSDDTF---------------NLF-------VGDLNVNVDDETL 104

Query: 118 KEAFTEKGFTV-------------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS 164
           + AF +    +             +G+ F         +   S ++A  A+  M    L+
Sbjct: 105 RNAFKDFPSYLSGHVMWDMQTGSSRGYGF---------VSFTSQDDAQNAMDSMQGQDLN 155

Query: 165 EQSHLRVSFS 174
            +  LR++++
Sbjct: 156 GRP-LRINWA 164

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 44.6 bits (106), Expect = 8e-07
 Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147
            GS   ++       L++ N+  S +E+ +++ F          +   K R  A +   +
Sbjct: 3   SGSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIK-PGAVER-VKKIRDYAFVHFSN 60

Query: 148 IEEAITALIQMHNHQLSEQSHLRVSFSK 175
            E+A+ A+  ++   L + S + V+ +K
Sbjct: 61  REDAVEAMKALNGKVL-DGSPIEVTLAK 87

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEEAI 152
           PS  ++L +IP   TE+++ +  +  G  V   K    D +       A ++   +E + 
Sbjct: 1   PSRVVYLGSIPYDQTEEQILDLCSNVG-PVINLK-MMFDPQTGRSKGYAFIEFRDLESSA 58

Query: 153 TALIQMHNHQLSEQSHLRVSFSK 175
           +A+  ++ +QL  +  L+  +S 
Sbjct: 59  SAVRNLNGYQLGSRF-LKCGYSS 80

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 43/181 (23%)

Query: 8   YGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ 62
              V     L + + +     A I +     A   +  ++ L++ G  +   +S      
Sbjct: 141 INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN----- 195

Query: 63  LPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVT-EDELKEAF 121
                             PL + K+  S   +        + + N+   +  E+ L+E+F
Sbjct: 196 ------------------PLEKSKRTDSATLE-----GREIMIRNLSTELLDENLLRESF 232

Query: 122 TEKGFTVKGFKFFPKDRKM------ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
              G +++        ++       A +  ++ + A  A +QM+   L  +  + VS + 
Sbjct: 233 EGFG-SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA-LQMNRSLLGNRE-ISVSLAD 289

Query: 176 S 176
            
Sbjct: 290 K 290

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 53/176 (30%)

Query: 8   YGDVLRVKILYNKKDS---ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLP 64
            G ++ V +  + K +   A I+ A    A  A+    K  V   ++ V           
Sbjct: 65  CGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHK-VVGQNEIIV----------- 112

Query: 65  KEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEK 124
                                          ++       ++N P S T+  +++   + 
Sbjct: 113 ------------------------SHLTECTLW-------MTNFPPSYTQRNIRDLLQDI 141

Query: 125 GFTVKGFKFFPKDRKM-----ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
              V      P  R       A + + S E+A   + +++  ++   + L    S 
Sbjct: 142 N-VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT-LVTKVSN 195

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 97  YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEE 150
                 L +++I     EDE++E F + G  +K       DR+       AL++ ++ ++
Sbjct: 69  SVEGWILFVTSIHEEAQEDEIQEKFCDYG-EIKNIH-LNLDRRTGFSKGYALVEYETHKQ 126

Query: 151 AITALIQMHNHQLSEQSHLRVSFSKS 176
           A+ A   ++  ++  Q+ ++V +   
Sbjct: 127 ALAAKEALNGAEIMGQT-IQVDWCFV 151

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MA 141
             S     + P   T+++SN+P S+T ++L   F++ G  V       KD+       +A
Sbjct: 4   GSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYG-KVVKVT-IMKDKDTRKSKGVA 61

Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
            +     + A      ++N QL  +  ++ S +
Sbjct: 62  FILFLDKDSAQNCTRAINNKQLFGRV-IKASIA 93

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAI 152
           P    + +  +P S  E+++++ F   G  V       KD         L++  S ++  
Sbjct: 14  PDDLYVSVHGMPFSAMENDVRDFF--HGLRVDAVH-LLKDHVGRNNGNGLVKFLSPQDTF 70

Query: 153 TALIQMHNHQL 163
            AL + +   +
Sbjct: 71  EAL-KRNRMLM 80

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTV---------KGFKFFPKDRK 139
           GS         S TL LSN+  S TE+ L+E F +  F           KG+ F      
Sbjct: 4   GSSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAF------ 57

Query: 140 MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
              ++  S E+A  AL   +  ++ E   +R+    
Sbjct: 58  ---IEFASFEDAKEALNSCNKREI-EGRAIRLELQG 89

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 78  TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA----FTEKG--FTVKGF 131
                     P   +      PS  + ++NI   V +++L+       + +G    +   
Sbjct: 7   AKFERQHMDSPDLGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD 66

Query: 132 KFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
                +   A +   + E A   +     +       L ++FS++
Sbjct: 67  L-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-PLVITFSET 109

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 8   YGDVLRVKILYNKK--DSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK 65
            GD+L + +  +      A I  A    A   +         G  + +  S+    Q+ +
Sbjct: 57  QGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116

Query: 66  EGQPD 70
           +G  +
Sbjct: 117 DGSLE 121

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAIT 153
                + L  +P   +++E+ + F+       G       +      A +Q  S E A  
Sbjct: 13  ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEK 72

Query: 154 ALIQMHNHQL 163
           AL + H  ++
Sbjct: 73  AL-KKHKERI 81

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 96  IYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIE 149
           +     ++ + NIP   TE++LK+ F+E G  V  F+    DR+          +    E
Sbjct: 4   VDRSLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFR-LVYDRETGKPKGYGFCEYQDQE 61

Query: 150 EAITALIQMHNHQLSEQSHLRVSFSKS 176
            A++A+  ++  + S ++ LRV  + S
Sbjct: 62  TALSAMRNLNGREFSGRA-LRVDNAAS 87

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAI 152
                L +SN+   V++ +++E F E G T+K       DR       A +  +   +A+
Sbjct: 33  ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAA-VDYDRSGRSLGTADVHFERRADAL 90

Query: 153 TALIQMHNHQLSEQSHLRVSFSKSN 177
            A+ Q     L  +  + +    S 
Sbjct: 91  KAMKQYKGVPLDGRP-MDIQLVASQ 114

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAI 152
                L +SN+   V++ +++E F E G T+K       DR       A +  +   +A+
Sbjct: 27  ETGGKLLVSNLDFGVSDADIQELFAEFG-TLKKAA-VHYDRSGRSLGTADVHFERKADAL 84

Query: 153 TALIQMHNHQLSEQSHLRVSFSKS 176
            A+ Q +   L  +  + +    S
Sbjct: 85  KAMKQYNGVPLDGRP-MNIQLVTS 107

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEA 151
             S  L + N+  + +E++L++ F+  G  +     +P D         A +     E A
Sbjct: 6   SGSGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELH-YPIDSLTKKPKGFAFVTFMFPEHA 63

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
           + A  ++       +  L V  S 
Sbjct: 64  VKAYAEVDGQVFQGRM-LHVLPST 86

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 41.5 bits (98), Expect = 9e-06
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 18/87 (20%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTV--------KGFKFFPKDRKMALLQLDSIE 149
             + TL   N+  ++TEDELKE F +             KG  +         ++  S  
Sbjct: 14  RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAY---------IEFKSEA 64

Query: 150 EAITALIQMHNHQLSEQSHLRVSFSKS 176
           +A   L +    ++  +S + + ++  
Sbjct: 65  DAEKNLEEKQGAEIDGRS-VSLYYTGE 90

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 47/185 (25%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55
           +      +G + R  ++Y+++          +  +   A  A   +    +  + + V  
Sbjct: 115 LVR---PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171

Query: 56  SKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTED 115
           +         +  P                              S  L +  +P    + 
Sbjct: 172 TD------AGQLTPAL--------------------------LHSRCLCVDRLPPGFNDV 199

Query: 116 E-LKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170
           + L  A +    +    +       + +  A+L+ ++ E A  A  Q     L    HLR
Sbjct: 200 DALCRALSAVH-SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS-HLR 257

Query: 171 VSFSK 175
           VSF  
Sbjct: 258 VSFCA 262

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/182 (11%), Positives = 54/182 (29%), Gaps = 53/182 (29%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           + S   +        +   K  +A + +    QA  A+    + R+  +++ V +    A
Sbjct: 42  LLSDYEL----KYCFVDKYKG-TAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDA 96

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
                                              +        ++N+P S+T+ + +E 
Sbjct: 97  ----------------------------------LLC-------VANLPPSLTQQQFEEL 115

Query: 121 FTEKGFTVKGFKFFPKDRKM-----ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
               G +++       +R          +    + A  A   +    L  ++ L V ++ 
Sbjct: 116 VRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT-LYVHWTD 173

Query: 176 SN 177
           + 
Sbjct: 174 AG 175

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 107 NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQ 166
            +P  VT  E+ +  ++         F  K +  A + L + E+A  A+   H  +L E+
Sbjct: 29  GLPGDVTNQEVHDLLSDYELKY---CFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRER 85

Query: 167 SHLRVSFSKSN 177
             L V    ++
Sbjct: 86  -ELSVQLQPTD 95

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 75  KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF 134
           K       H     G    + +   +  L +SN+   V++ +++E F E G T+K     
Sbjct: 64  KPLPDKWQHDLFDSGCGGGEGVETGA-KLLVSNLDFGVSDADIQELFAEFG-TLKKAA-V 120

Query: 135 PKDRK-----MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
             DR       A +  +   +A+ A+ Q     L  +  + +    S 
Sbjct: 121 DYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP-MDIQLVASQ 167

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------AL 142
           GS   +    P+  L +  +    TE +L+E F++ G  +        D++       A 
Sbjct: 4   GSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYG-PIADVS-IVYDQQSRRSRGFAF 61

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           +  +++++A  A  + +  +L  +  +RVS   S
Sbjct: 62  VYFENVDDAKEAKERANGMELDGRR-IRVSGPSS 94

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG-----FTVKGFKFFPKDRKMALLQLDSIEEAI 152
             S  LH+ NI  + T  EL+  F E G       VK + F         + ++  E+A+
Sbjct: 8   KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF---------VHMERAEDAV 58

Query: 153 TALIQMHNHQLSEQSHLRVSFSKS 176
            A+  + N +  +   + V  S S
Sbjct: 59  EAIRGLDNTEF-QGKRMHVQLSTS 81

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Length = 89

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159
           S  L L N+ A +    L+    + G  +  F  +     +AL +  + EEA  A + ++
Sbjct: 7   SSWLLLKNLTAQIDGPTLRTLCMQHG-PLVSFHPYLNQG-IALCKYTTREEANKAQMALN 64

Query: 160 NHQLSEQSHLRVSFSKSNIQDI 181
           N  L+  +    S S++ +Q I
Sbjct: 65  NCVLANTTIFAESPSENEVQSI 86

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTV-------KGFKFFPKDRKMALLQLDSIEEAITA 154
            L++ N+  +VT D+L++ F ++   +        G+ F         +       AI A
Sbjct: 10  KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAF---------VDYPDQNWAIRA 60

Query: 155 LIQMHNHQLSEQSHLRVSFSKS 176
           +  +          + V +S S
Sbjct: 61  IETLSGKVELHGKIMEVDYSVS 82

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEEA 151
             S  L++ ++  ++TED L+  F   G  +       KD           +     E A
Sbjct: 3   SGSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIV-LMKDSDTGRSKGYGFITFSDSECA 60

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             AL Q++  +L+ +  +RV    
Sbjct: 61  RRALEQLNGFELAGRP-MRVGHVT 83

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 102

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASV-TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
            GS   +        +H+ +         +L +     G  +       K    A +++ 
Sbjct: 3   SGSSGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILNK-INEAFIEMA 60

Query: 147 SIEEAITALIQMHNHQLSEQSHLR-----VSFSKS 176
           + E+A        ++  +  + +      V  S+ 
Sbjct: 61  TTEDAQA----AVDYYTTTPALVFGKPVRVHLSQK 91

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 91  KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQ 144
           +  + +   S TL++ N+    TE+++ E F++ G  +K       D+          ++
Sbjct: 30  EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKII-MGLDKMKKTACGFCFVE 87

Query: 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
             S  +A  A+  ++  +L ++  +R  +  
Sbjct: 88  YYSRADAENAMRYINGTRLDDRI-IRTDWDA 117

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-----AL 142
             S  F        T+ + N+ A V E+ L E F + G  +       KDR+        
Sbjct: 4   GSSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAG-PLTKVT-ICKDREGKPKSFGF 61

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           +     E    A+  ++  +L     + VS   S
Sbjct: 62  VCFKHPESVSYAIALLNGIRL-YGRPINVSGPSS 94

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 111 SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170
            +T   L+ AF+  G  +         R  A +  + +E A  A+ +++  Q+ E   L+
Sbjct: 24  DMTPTLLRGAFSPFG-NIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQV-ESVQLK 80

Query: 171 VSFSKS 176
           V+ ++ 
Sbjct: 81  VNIARK 86

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 36.1 bits (84), Expect = 9e-04
 Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 8  YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG 67
          +G+++ + +   +   A +   +   A  A+  ++  +V   Q++V I++ Q      + 
Sbjct: 37 FGNIIDLSMDPPRN-CAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP---MLDS 92

Query: 68 QPDAG 72
           P +G
Sbjct: 93 GPSSG 97

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALL 143
           GS            +H+  +P   TE+++   F                        A +
Sbjct: 4   GSSGSSFQSTTGHCVHMRGLPYRATENDIYNFF--SPLNPMRVH-IEIGPDGRVTGEADV 60

Query: 144 QLDSIEEAITALIQMHNHQL 163
           +  + E+A+ A+       +
Sbjct: 61  EFATHEDAVAAM-AKDKANM 79

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----M 140
           ++ G  +          + L  +P   T++E+ + F+       G    P D +      
Sbjct: 28  QQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGIT-LPVDPEGKITGE 86

Query: 141 ALLQLDSIEEAITALIQMHNHQL 163
           A +Q  S E A  AL   H  ++
Sbjct: 87  AFVQFASQELAEKAL-GKHKERI 108

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 59/192 (30%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55
           ++      G +L +++  +         A +   +   A  A+  M+   + GK +R+M 
Sbjct: 32  LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91

Query: 56  SKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTED 115
           S           Q D  L K                   NI+       + N+  S+   
Sbjct: 92  S-----------QRDPSLRKSGVG---------------NIF-------IKNLDKSIDNK 118

Query: 116 ELKEAFTEKGFTV-----------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS 164
            L + F+  G  +           KG+ F         +  ++ E A  A+ +M+   L+
Sbjct: 119 ALYDTFSAFGNILSCKVVCDENGSKGYGF---------VHFETQEAAERAIEKMNGMLLN 169

Query: 165 EQSHLRVSFSKS 176
           ++  + V   KS
Sbjct: 170 DRK-VFVGRFKS 180

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 87  KPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
             G    + ++       + N+  +VTE+ L++AF++ G  ++  K   KD   A +  D
Sbjct: 5   SSGMAKVKVLF-------VRNLANTVTEEILEKAFSQFG-KLERVK-KLKD--YAFIHFD 53

Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
             + A+ A+ +M+   L E  ++ + F+K 
Sbjct: 54  ERDGAVKAMEEMNGKDL-EGENIEIVFAKP 82

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-------ALLQLDSIEEA 151
           P  T  L N+P  VTE+ +KE F  +G  +   +  P++             + + ++  
Sbjct: 18  PPYTAFLGNLPYDVTEESIKEFF--RGLNISAVR-LPREPSNPERLKGFGYAEFEDLDSL 74

Query: 152 ITALIQMHNHQLSEQSHLRVSFSKS 176
           ++AL  ++   L  +  +RV  +  
Sbjct: 75  LSAL-SLNEESLGNRR-IRVDVADQ 97

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 9/70 (12%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAIT 153
              T+ L   P +VTE  + E            +   ++          +   + EE   
Sbjct: 9   TCHTVKLRGAPFNVTEKNVMEFL--APLKPVAIR-IVRNAHGNKTGYIFVDFSNEEEVKQ 65

Query: 154 ALIQMHNHQL 163
           AL + +   +
Sbjct: 66  AL-KCNREYM 74

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEEA 151
            P  T ++ N+P +  + ++   F  K  +++  +   +D+          ++ D ++  
Sbjct: 13  EPPYTAYVGNLPFNTVQGDIDAIF--KDLSIRSVR-LVRDKDTDKFKGFCYVEFDEVDSL 69

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             AL       L ++S LRV  ++
Sbjct: 70  KEAL-TYDGALLGDRS-LRVDIAE 91

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG-----FTVKGFKFFPKDRKMALLQLDSIEEAI 152
             +  + + N+ A+ T  EL+  F  +G       VK + F         + ++   +A 
Sbjct: 7   GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAF---------VHMEKEADAK 57

Query: 153 TALIQMHNHQLSEQSHLRVSFSKS 176
            A+ Q++  ++ +   + V  S  
Sbjct: 58  AAIAQLNGKEV-KGKRINVELSTK 80

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG------FTVKGFKFFPKDRK--- 139
           G  +  + +  + T+ +  +  +VT + + + F + G       T +       DR+   
Sbjct: 2   GHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK 61

Query: 140 ---MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173
               A +  D    A  A+      +    + ++VSF
Sbjct: 62  LKGEATVSFDDPPSAKAAIDWFDGKEF-SGNPIKVSF 97

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 6/70 (8%), Positives = 17/70 (24%), Gaps = 7/70 (10%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAIT 153
               ++L  +P       + + F +                        ++  +  +   
Sbjct: 24  AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKA 82

Query: 154 ALIQMHNHQL 163
           AL   H   +
Sbjct: 83  AL-CRHKQYM 91

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 45/155 (29%)

Query: 24  ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLH 83
           A ++     +   AM   D +   G+ +++                              
Sbjct: 54  AFLEFRSVDETTQAMA-FDGIIFQGQSLKIRRPH-------------------------- 86

Query: 84  RFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM--- 140
                       ++       +  +P  + +D++KE  T  G  +K F    KD      
Sbjct: 87  --DYQPLPGAHKLF-------IGGLPNYLNDDQVKELLTSFG-PLKAFN-LVKDSATGLS 135

Query: 141 ---ALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172
              A  +   I     A+  ++  QL ++  L V 
Sbjct: 136 KGYAFCEYVDINVTDQAIAGLNGMQLGDK-KLLVQ 169

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----------KDRKMALLQLDS 147
             +  L++ NIP  +TE+ + + F  +   + G    P          +D+  A L+  S
Sbjct: 2   GSARRLYVGNIPFGITEEAMMDFFNAQM-RLGGLTQAPGNPVLAVQINQDKNFAFLEFRS 60

Query: 148 IEEAITALIQMHNHQLSEQSHLRVSFSK 175
           ++E   A+          QS L++    
Sbjct: 61  VDETTQAM-AFDGIIFQGQS-LKIRRPH 86

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEA 151
             + T+ ++N+     E +L+E F   G ++       KD+        A +     E+A
Sbjct: 13  DDNATIRVTNLSEDTRETDLQELFRPFG-SISRIY-LAKDKTTGQSKGFAFISFHRREDA 70

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             A+  +          L V ++K
Sbjct: 71  ARAIAGVSGFGYDHLI-LNVEWAK 93

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 83  HRFKKPGSKNFQNIYPPSP----TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR 138
           H     G     +     P     + + N+P   +  +LK+   E            +D 
Sbjct: 7   HHHHSSGLVPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDF 66

Query: 139 K-MALLQLDSIEEAITALIQMHNHQL 163
                L+  S E  + AL +++N + 
Sbjct: 67  DGTGALEFPSEEILVEALERLNNIEF 92

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEEA 151
            P+  L +  +    TE +L+E F++ G  +        D++       A +  +++++A
Sbjct: 44  DPNCCLGVFGLSLYTTERDLREVFSKYG-PIADVS-IVYDQQSRRSRGFAFVYFENVDDA 101

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             A  + +  +L  +  +RV FS 
Sbjct: 102 KEAKERANGMELDGRR-IRVDFSI 124

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-------MALLQLDSIEEA 151
           P  T  L N+P  VTE+ +KE F  +G  +   +  P++             + + ++  
Sbjct: 14  PPYTAFLGNLPYDVTEESIKEFF--RGLNISAVR-LPREPSNPERLKGFGYAEFEDLDSL 70

Query: 152 ITALIQMHNHQLSEQSHLRVSFSKS 176
           ++AL  ++   L  +  +RV  +  
Sbjct: 71  LSAL-SLNEESLGNKR-IRVDVADQ 93

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMAL 142
            GS   ++       L +  +    +E+++   F   G  +       +      +  A 
Sbjct: 3   SGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECT-VLRGPDGSSKGCAF 60

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSH--LRVSFSKS 176
           ++  S  EA  A+  +H  Q    +   L V F+ +
Sbjct: 61  VKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MAL 142
           GS     +      L +  +     E  L++ F++ G  +       KDR+         
Sbjct: 1   GSSGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVV-VVKDRETQRSRGFGF 58

Query: 143 LQLDSIEEAITALIQMHNHQL 163
           +  ++I++A  A++ M+   +
Sbjct: 59  VTFENIDDAKDAMMAMNGKSV 79

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 61/187 (32%)

Query: 8   YGDVLRVKILYNKKDS-------ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           YG V  + +L ++  +         +       A  A   +  ++V       +  K   
Sbjct: 27  YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK--- 83

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
              P + +                  K  +   + ++       +  I    TE++++  
Sbjct: 84  ---PADSE------------------KNNAVEDRKLF-------IGMISKKCTENDIRVM 115

Query: 121 FTEKGFTV------------KGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168
           F+  G               +G  F         +   +   A TA+  MH  Q  E   
Sbjct: 116 FSSFGQIEECRILRGPDGLSRGCAF---------VTFTTRAMAQTAIKAMHQAQTMEGCS 166

Query: 169 --LRVSF 173
             + V F
Sbjct: 167 SPMVVKF 173

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG------FTVKGFKFFPKDRKM------ALLQL 145
             + T+ +  +  +VT + + + F + G       T +       DR+       A +  
Sbjct: 5   SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSF 64

Query: 146 DSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
           D    A  A+      +    + ++VSF+ 
Sbjct: 65  DDPPSAKAAIDWFDGKEF-SGNPIKVSFAT 93

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 22/87 (25%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTV------------KGFKFFPK 136
           GS            LH+SNIP    + +L++ F + G  +            KGF F   
Sbjct: 4   GSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGF--- 59

Query: 137 DRKMALLQLDSIEEAITALIQMHNHQL 163
                 +  ++  +A  A  ++H   +
Sbjct: 60  ------VTFENSADADRAREKLHGTVV 80

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALL 143
            GS           TL++ N+   VTE  + + F++ G   K  K    +         +
Sbjct: 3   SGSSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCK-MITEHTSNDPYCFV 60

Query: 144 QLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           +     +A  AL  M+  ++  +  ++V+++ +
Sbjct: 61  EFYEHRDAAAALAAMNGRKILGKE-VKVNWATT 92

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 8  YGDVLRVKILYNKKDS---ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
           G     K++     +     ++  E   A  A+  M+  ++ GK+++V  + 
Sbjct: 39 IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 8  YGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56
          YG+V  V+IL + +       A +    +  A   + ++    V G  +   + 
Sbjct: 30 YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEA 151
            P   +  + +  +V E  LK+   + G  V+  +      +      +A +   S   A
Sbjct: 4   IPLKEVTFARLNDNVRETFLKDMCRKYG-EVEEVE-ILLHPRTRKHLGLARVLFTSTRGA 61

Query: 152 ITALIQMHNHQLSEQSHLRVSFSKS 176
              +  +H   +   + +       
Sbjct: 62  KETVKNLHLTSV-MGNIIHAQLDIK 85

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 75  KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF 134
             + A+ +    + GS     +Y       + ++  ++TED L+  F   G  ++  +  
Sbjct: 8   HSHMAAAMANNLQKGSAGPMRLY-------VGSLHFNITEDMLRGIFEPFG-RIESIQ-L 58

Query: 135 PKDRK------MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
             D +         +     E A  AL Q++  +L+ +  ++V    
Sbjct: 59  MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP-MKVGHVT 104

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM---ALLQLDSIEEAITAL 155
            +  L++ N+P  +T +E+ + F + G  ++  +      +    A +  + I +A  A+
Sbjct: 7   VNRILYIRNLPYKITAEEMYDIFGKYG-PIRQIR-VGNTPETRGTAYVVYEDIFDAKNAV 64

Query: 156 IQMHNHQLSEQSHLRVSFSKSN 177
             +    +S + +L V +  +N
Sbjct: 65  DHLSGFNVSNR-YLVVLYYNAN 85

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 4/112 (3%)

Query: 54  MISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVT 113
           M S H          P        T           S+           +H+  +P   T
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQ-STTGHCVHMRGLPYKAT 59

Query: 114 EDELKEAFTEKGFTVKGFKFFPKDRKM--ALLQLDSIEEAITALIQMHNHQL 163
           E+++   F+         +  P  R    A ++  + EEA+ A+       +
Sbjct: 60  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM 110

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG-----FTVKGFKFFPKDRKM 140
           +     + Q     +  L +   P  V E EL E F   G       + GF F       
Sbjct: 17  RGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAF------- 69

Query: 141 ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
             ++ +  E A  A+ ++H         L V +SK 
Sbjct: 70  --VEFEEAESAAKAIEEVHGKSF-ANQPLEVVYSKL 102

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFPKDRK----- 139
           K                L++ N+    T+++L EA    G   +   KFF ++R      
Sbjct: 54  KGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-ENRANGQSK 112

Query: 140 -MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
             AL+ + S   +   +  +   +L  Q+   V+   
Sbjct: 113 GFALVGVGSEASSKKLMDLLPKRELHGQN-PVVTPVN 148

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 11/101 (10%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 83  HRFKKPGSKNFQNIYPPSPTLHLSNIPAS--VTEDELKEAFTEKGFTVKGFKFFPKDRKM 140
           H   +   +  + +   + +L ++N      V+ ++L     + G  V      P ++  
Sbjct: 3   HTLLRH--EGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDAL-LMPPNKPY 58

Query: 141 ALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDI 181
           +  +  + EE+  A + ++  ++ +    +++   + ++ +
Sbjct: 59  SFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 99

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM------ALLQLDSIEEAI 152
            + ++++ N+    T +EL+  F   G +V        D+        A ++    E   
Sbjct: 5   DARSIYVGNVDYGATAEELEAHFHGCG-SVNRVT-ILCDKFSGHPKGFAYIEFSDKESVR 62

Query: 153 TALIQMHNHQLSEQSHLRVSFSKSNI 178
           T+ + +       +  ++V   ++N 
Sbjct: 63  TS-LALDESLFRGRQ-IKVIPKRTNR 86

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 87  KPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------M 140
             GS    +      T+ + N+     E+ L E   + G  +K  +              
Sbjct: 2   SSGSSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVR-VVLHPDTEHSKGC 59

Query: 141 ALLQLDSIEEAITALIQMHNHQLSEQS-----HLRVSFSKS 176
           A  Q  + E A   L                  L+V  + +
Sbjct: 60  AFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 30/93 (32%)

Query: 84  RFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTV-------------KG 130
           +  K   ++  N+Y       +SN+P S+ E EL+      G  V             +G
Sbjct: 16  QMAKQQEQDPTNLY-------ISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRG 67

Query: 131 FKFFPKDRKMALLQLDSIEEAITALIQMHNHQL 163
             F          +++S E+    +   +   +
Sbjct: 68  VGF---------ARMESTEKCEAVIGHFNGKFI 91

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEA 151
            PS TL +  +    TE+ LKE+F          +    DR+         +  +S E+A
Sbjct: 13  QPSKTLFVKGLSEDTTEETLKESFDG----SVRAR-IVTDRETGSSKGFGFVDFNSEEDA 67

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             A   M + ++ + + + + ++K
Sbjct: 68  KAAKEAMEDGEI-DGNKVTLDWAK 90

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 24/85 (28%)

Query: 107 NIPASVTEDELKEAFTEKGFTV-------------KGFKFFPKDRKMALLQLDSIEEAIT 153
            IP ++ E +LK  F E G                KG  F         L     E A+ 
Sbjct: 20  QIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAF---------LTYCERESALK 70

Query: 154 ALIQMHNHQLSEQSH--LRVSFSKS 176
           A   +H  +     +  ++V  + S
Sbjct: 71  AQSALHEQKTLPGMNRPIQVKPADS 95

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 88  PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG-----FTVKGFKFFPKDRKMAL 142
            GS     ++       + N+P   TE E++  F + G       +K + F         
Sbjct: 3   SGSSGMVKLF-------IGNLPREATEQEIRSLFEQYGKVLECDIIKNYGF--------- 46

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           + ++    A  A+  +H+++L   + + V  SK+
Sbjct: 47  VHIEDKTAAEDAIRNLHHYKLHGVN-INVEASKN 79

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEA 151
                L++  +   V +  L  AF   G  +   +  P D +       A ++ +  E+A
Sbjct: 5   TTKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQ-IPLDYETEKHRGFAFVEFELAEDA 62

Query: 152 ITALIQMHNHQLSEQSHLRVSFSK 175
             A+  M+  +L  ++ +RV+ +K
Sbjct: 63  AAAIDNMNESELFGRT-IRVNLAK 85

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 62  QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPT-LHLSNIPASVTEDELKEA 120
           Q+P   Q D             + ++       N  P     L ++ IP +V E +L++ 
Sbjct: 3   QIPLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQL 62

Query: 121 FTEKGFTVKGFKFFPKDR-----------KMALLQLDSIEEAITALIQMHNHQLSEQSHL 169
           F   G  ++  K    DR           K       S   A  A+  ++   +  +  L
Sbjct: 63  FERYG-PIESVKIV-CDRETRQSRGYGFVKF-----QSGSSAQQAIAGLNGFNILNKR-L 114

Query: 170 RVSFSKS 176
           +V+ + S
Sbjct: 115 KVALAAS 121

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MALLQLDSIEEAI 152
              TL + N+    + D L+  F + G  V      P++         A ++     +A 
Sbjct: 12  GMITLKVDNLTYRTSPDSLRRVFEKYG-RVGDVY-IPREPHTKAPRGFAFVRFHDRRDAQ 69

Query: 153 TALIQMHNHQLSEQSHLRVSFSK 175
            A   M   +L  +  LRV  ++
Sbjct: 70  DAEAAMDGAELDGRE-LRVQVAR 91

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 10/119 (8%)

Query: 65  KEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEK 124
           +  +P   + ++ +  P +         +  +      +++ +     T+ +L +     
Sbjct: 21  QSMEPPPPVRQEPSPKP-NNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSI 79

Query: 125 GFT-VKGFKFFPKDRK------MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           G   V   KF  ++R        A + + S       L  +    L+ +  + V  +  
Sbjct: 80  GVYDVVELKFA-ENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK-VDVRPATR 136

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFPKDRK------MALLQLDSIEEAITAL 155
           L++ N+    T+++L EA    G   +   KFF ++R        AL+ + S   +   +
Sbjct: 4   LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF-ENRANGQSKGFALVGVGSEASSKKLM 62

Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
             +   +L  Q+   V+ S  
Sbjct: 63  DLLPKRELHGQN-PVVTPSNK 82

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK--FFPKDRK-----MALLQLDSIEE 150
                + +  +P + T +E+   F +      G +   F           A +     E 
Sbjct: 21  ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEY 80

Query: 151 AITALIQMHNHQL 163
           A  AL + H   L
Sbjct: 81  AQNAL-RKHKDLL 92

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 8   YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG 67
           YG V    +    K  A +Q +    A  A++  +   + G+ + + ++       P   
Sbjct: 52  YGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK---PDRS 105

Query: 68  QPDAG 72
            P +G
Sbjct: 106 GPSSG 110

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK-----MALLQLDSIEEAI 152
               T+ ++N+   V   +LKE F+  G  V       +D+      +  +  +   EA+
Sbjct: 13  RLGSTVFVANLDYKVGWKKLKEVFSMAG-VVVRADIL-EDKDGKSRGIGTVTFEQSIEAV 70

Query: 153 TALIQMHNHQL 163
            A+   +   L
Sbjct: 71  QAISMFNGQLL 81

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK------MAL 142
           GS     +      L++  +   V +  L  AF   G  +   +  P D +       A 
Sbjct: 1   GSSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQ-IPLDYETEKHRGFAF 58

Query: 143 LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
           ++ +  E+A  A+  M+  +L  ++ +RV+ +K
Sbjct: 59  VEFELAEDAAAAIDNMNESELFGRT-IRVNLAK 90

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 102 TLHLSNIPASVTEDELKE----AFTEKGFTVKGFKFFPKDRK--MALLQLDSIEEAITAL 155
            + +SNI   ++  EL++    AF   G  VK  +  P       A++Q++++++AI A+
Sbjct: 11  DVQVSNIDYRLSRKELQQLLQEAFARHG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAV 69

Query: 156 IQMHNHQLSEQSHLRVSFSKSN 177
             +H +++  +  + VS +   
Sbjct: 70  NSLHRYKIGSKK-ILVSLATGA 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	100.0
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	100.0
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	100.0
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	100.0
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	100.0
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	100.0
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	100.0
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.98
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.97
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.97
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.97
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.97
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.97
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.97
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.97
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.97
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.96
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.96
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.96
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.95
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.95
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.93
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.9
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.88
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.88
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.88
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.88
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.87
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.87
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.86
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.86
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.86
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.85
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.85
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.85
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.85
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.85
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.84
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.84
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.84
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.84
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.84
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.84
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.84
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.84
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.84
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.84
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.84
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.84
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.83
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.83
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.83
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.83
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.83
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.83
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.83
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.83
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.83
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.83
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.83
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.83
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.83
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.83
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.83
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.83
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.82
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.82
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.82
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.82
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.82
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.82
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.82
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.82
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.82
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.82
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.82
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.82
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.82
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.82
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.82
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.82
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.82
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.82
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.82
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.82
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.82
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.81
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.81
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.81
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.81
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.81
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.81
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.81
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.81
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.81
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.81
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.81
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.81
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.81
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.81
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.81
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.81
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.81
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.81
2div_A	99	TRNA selenocysteine associated protein; structural	99.8
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.8
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.8
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.8
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.8
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.8
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.8
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.8
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.8
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.8
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.8
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.8
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.8
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.8
1x5p_A	97	Negative elongation factor E; structure genomics,	99.8
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.8
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.79
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.79
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.79
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.79
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.79
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.79
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.79
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.79
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.79
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.79
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.79
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.78
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.78
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.78
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.78
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.78
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.78
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.78
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.78
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.77
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.77
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.77
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.77
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.77
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.77
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.77
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.77
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.77
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.76
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.76
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.76
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.76
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.76
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.76
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.76
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.75
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.75
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.75
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.75
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.75
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.75
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.75
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.75
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.74
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.74
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.74
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.73
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.73
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.73
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.73
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.73
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.73
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.73
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.73
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.72
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.72
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.72
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.72
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.55
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.71
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.71
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.71
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.7
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.7
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.69
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.69
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.68
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.68
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.67
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.66
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.66
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.66
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.66
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.64
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.64
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.64
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.64
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.64
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.63
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.63
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.63
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.63
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.62
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.62
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.62
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.62
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.61
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.61
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.6
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.6
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.6
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.59
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.59
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.58
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.57
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.56
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.56
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.55
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.55
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.54
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.54
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.53
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.53
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.53
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.53
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.53
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.52
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.52
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.52
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.52
1x5p_A	97	Negative elongation factor E; structure genomics,	99.52
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.52
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.52
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.52
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.52
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.51
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.51
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.51
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.51
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.51
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.51
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.5
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.5
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.5
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.5
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.5
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.5
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.5
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.5
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.5
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.5
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.49
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.49
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.49
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.49
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.49
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.49
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.49
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.49
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.49
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.49
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.49
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.48
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.48
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.48
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.48
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.48
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.48
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.48
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.48
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.48
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.48
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.48
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.48
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.47
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.47
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.47
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.47
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.47
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.46
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.46
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.46
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.46
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.46
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.46
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.46
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.46
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.45
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.45
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.45
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.45
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.45
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.45
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.45
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.45
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.44
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.44
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.44
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.44
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.43
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.43
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.43
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.42
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.42
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.42
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.42
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.42
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.41
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.41
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.41
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.41
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.41
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.4
2div_A	99	TRNA selenocysteine associated protein; structural	99.4
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.4
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.39
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.39
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.39
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.39
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.38
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.38
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.38
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.38
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.38
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.38
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.37
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.37
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.37
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	99.37
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.37
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.36
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.36
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.36
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.36
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.36
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.35
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.35
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.35
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.35
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.34
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.34
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.33
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.33
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.32
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.31
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.31
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.31
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.3
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.29
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.29
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.29
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.28
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.28
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.28
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.28
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.28
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.28
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	98.94
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	99.26
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.25
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.25
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.24
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.23
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.22
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.22
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.22
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.21
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.21
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.17
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.17
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.16
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.15
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.12
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.1
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	99.1
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.09
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.09
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.09
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.08
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.02
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	98.53
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.49
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	98.29
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.1
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	98.05
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	97.98
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.88
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	97.77
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.6
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.54
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	97.42
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	97.1
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	96.98
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	96.96
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.62
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	96.58
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.43
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	94.64
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	94.18

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=100.00  E-value=2e-37  Score=228.00  Aligned_cols=171  Identities=28%  Similarity=0.454  Sum_probs=137.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCC---CCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG---QPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~---~~~~~~~~~~   77 (184)
                      |+++|++||+|.+|++++.++|+|||+|.++++|+.|++.|||..+.|++|+|.+++.... .|+..   .......+++
T Consensus        22 L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~-~p~~~~~~~~~~~~~~~~  100 (205)
T 3tyt_A           22 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI-MPGQSYGLEDGSCSYKDF  100 (205)
T ss_dssp             HHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC-CCCSCCBCTTSCBSEEEC
T ss_pred             HHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc-CCCcccccccCCcccccc
Confidence            6899999999999999988899999999999999999999999999999999999986654 22211   1112223555


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCce--eEEEEccC---CCceEEEEeCCHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTV--KGFKFFPK---DRKMALLQLDSIEEAI  152 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v--~~v~v~~~---~~~~afV~f~~~~~A~  152 (184)
                      ..++.+++..+.....++..+|+++|||+|||+++|+++|+++|++|| .|  .++++++.   .+++|||+|++.++|.
T Consensus       101 ~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G-~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~  179 (205)
T 3tyt_A          101 SESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG-VKRPTSVKVFSGKSERSSSGLLEWDSKSDAL  179 (205)
T ss_dssp             TTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT-CCCCSEEEECSCCSSSSEEEEEECSSHHHHH
T ss_pred             CCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEEEcCCCCCceEEEEEeCCHHHHH
Confidence            555555555433333345567899999999999999999999999999 88  89998863   2589999999999999


Q ss_pred             HHHHHhcCeecCCC---CeEEEEe
Q psy17274        153 TALIQMHNHQLSEQ---SHLRVSF  173 (184)
Q Consensus       153 ~Ai~~lng~~i~g~---~~l~v~~  173 (184)
                      +|+..|||+.+.|.   +++.|.|
T Consensus       180 ~Ai~~lng~~~~g~~~~~p~~vk~  203 (205)
T 3tyt_A          180 ETLGFLNHYQMKNPNGPYPYTLKL  203 (205)
T ss_dssp             HHHHHHTTCEECCSSSSSCEECEE
T ss_pred             HHHHHhCCCCccCCCCCcceEEEe
Confidence            99999999999984   2455544

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=100.00  E-value=2.5e-37  Score=226.05  Aligned_cols=177  Identities=67%  Similarity=1.060  Sum_probs=155.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.++|++||.|.+|+++...+|+|||+|.+.++|..|++.|||..+.|++|.|.+++......++......+...++...
T Consensus        21 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (198)
T 1qm9_A           21 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS  100 (198)
T ss_dssp             HHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCC
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCC
Confidence            57899999999999998877899999999999999999999999999999999999877665555554445556667666


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      +..++..+.........+|+++|+|+|||..+++++|+++|++||..|..++++++++|+|||+|.+.++|.+|+..|||
T Consensus       101 ~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g  180 (198)
T 1qm9_A          101 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN  180 (198)
T ss_dssp             CTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred             chhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC
Confidence            66677666666666677789999999999999999999999999956889999887899999999999999999999999


Q ss_pred             eecC-CCCeEEEEecCccc
Q psy17274        161 HQLS-EQSHLRVSFSKSNI  178 (184)
Q Consensus       161 ~~i~-g~~~l~v~~~~~~~  178 (184)
                      ..++ | ++|+|+|+++++
T Consensus       181 ~~~~~g-~~l~v~~a~~~i  198 (198)
T 1qm9_A          181 HDLGEN-HHLRVSFSKSTI  198 (198)
T ss_dssp             SCCSSC-CSCCEEEECCCC
T ss_pred             CccCCC-CeEEEEeecccC
Confidence            9999 8 899999999764

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=100.00  E-value=6.7e-37  Score=228.90  Aligned_cols=177  Identities=67%  Similarity=1.060  Sum_probs=154.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.++|++||.|.+|+++...+|||||+|.+.++|++|++.|||..+.|++|.|.+++......++..........++...
T Consensus        52 L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~  131 (229)
T 2adc_A           52 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS  131 (229)
T ss_dssp             HHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTC
T ss_pred             HHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccC
Confidence            57899999999999998877899999999999999999999999999999999999877665555444444555666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      +..++..+.........+|+++|||+|||+.+++++|+++|++||..|..++++++++++|||+|.+.++|.+|+..|||
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g  211 (229)
T 2adc_A          132 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN  211 (229)
T ss_dssp             SSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred             cccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCC
Confidence            66666666655555667789999999999999999999999999966899999877899999999999999999999999


Q ss_pred             eecC-CCCeEEEEecCccc
Q psy17274        161 HQLS-EQSHLRVSFSKSNI  178 (184)
Q Consensus       161 ~~i~-g~~~l~v~~~~~~~  178 (184)
                      ..++ | +.|+|+|+++++
T Consensus       212 ~~~~~g-~~l~v~~a~~~i  229 (229)
T 2adc_A          212 HDLGEN-HHLRVSFSKSTI  229 (229)
T ss_dssp             CBSSSS-CBCEEEECSSCC
T ss_pred             CccCCC-CeEEEEEecCCC
Confidence            9999 8 899999999864

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=100.00  E-value=1.5e-32  Score=210.87  Aligned_cols=174  Identities=21%  Similarity=0.337  Sum_probs=129.9

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-CCCC--------
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-EGQP--------   69 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-~~~~--------   69 (184)
                      |+++|++||.|.+|++++  .++|||||+|.+.++|.+|++.|||..+.|++|+|.+++........ .+..        
T Consensus        30 L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~  109 (282)
T 3pgw_A           30 LYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKRE  109 (282)
T ss_pred             HHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhh
Confidence            568999999999999887  46899999999999999999999999999999999998754421000 0000        


Q ss_pred             -------C----------CCcccccCCCCCC---------CC-------------C------CCCC--------------
Q psy17274         70 -------D----------AGLTKDYTASPLH---------RF-------------K------KPGS--------------   90 (184)
Q Consensus        70 -------~----------~~~~~~~~~~~~~---------~~-------------~------~~~~--------------   90 (184)
                             .          .............         ..             .      .++.              
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  189 (282)
T 3pgw_A          110 KRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ  189 (282)
T ss_pred             hhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccc
Confidence                   0          0000000000000         00             0      0000              


Q ss_pred             --------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCee
Q psy17274         91 --------KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ  162 (184)
Q Consensus        91 --------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~  162 (184)
                              .......+++++|||+|||..+|+++|+++|++|| .|.+|++.+..+|+|||+|.+.++|.+|+..|||..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~  268 (282)
T 3pgw_A          190 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP-GFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK  268 (282)
T ss_pred             cCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC-CeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcE
Confidence                    00012234678999999999999999999999999 999999997667999999999999999999999999


Q ss_pred             cC-CCCeEEEEecCc
Q psy17274        163 LS-EQSHLRVSFSKS  176 (184)
Q Consensus       163 i~-g~~~l~v~~~~~  176 (184)
                      +. | +.|+|+|++.
T Consensus       269 ~~~g-~~l~v~~akk  282 (282)
T 3pgw_A          269 ITQN-NAMKISFAKK  282 (282)
T ss_pred             eCCC-CEEEEEEecC
Confidence            99 9 8999999973

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-33  Score=196.14  Aligned_cols=141  Identities=16%  Similarity=0.273  Sum_probs=124.2

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD   76 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~   76 (184)
                      |.++|++||+|.+|+++.    .++|+|||+|.+.++|..|++.|||..+.|++|.|.++......              
T Consensus        17 l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~--------------   82 (166)
T 3md3_A           17 LKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS--------------   82 (166)
T ss_dssp             HHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC--------------
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC--------------
Confidence            568999999999999986    25689999999999999999999999999999999988632210              


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHH
Q psy17274         77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEA  151 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A  151 (184)
                                         ...++.+|+|+|||+.+|+++|+++|++|| .|..+.+...     .+|+|||+|.+.++|
T Consensus        83 -------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A  142 (166)
T 3md3_A           83 -------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDA  142 (166)
T ss_dssp             -------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred             -------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence                               011567899999999999999999999999 9999998753     257999999999999


Q ss_pred             HHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        152 ITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       152 ~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+|+..|||..++| ++|+|+|++.
T Consensus       143 ~~A~~~l~g~~~~g-~~i~v~~a~~  166 (166)
T 3md3_A          143 QNAMDSMQGQDLNG-RPLRINWAAK  166 (166)
T ss_dssp             HHHHHHHTTCEETT-EECEEEESCC
T ss_pred             HHHHHHhCCCccCC-cEEEEEecCC
Confidence            99999999999999 8999999873

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=100.00  E-value=7.9e-33  Score=204.66  Aligned_cols=142  Identities=18%  Similarity=0.259  Sum_probs=124.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||+|.+|++++     .++|||||+|.+.++|.+|++.+||..+.|+.|++.++.......            
T Consensus        32 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~------------   99 (213)
T 4f02_A           32 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR------------   99 (213)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH------------
T ss_pred             HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc------------
Confidence            578999999999999987     257999999999999999999999999999999998876322110            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAI  152 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~  152 (184)
                                           .....+|||+|||+.+|+++|+++|++|| .|..++|..+   ++|+|||+|.+.++|.
T Consensus       100 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~d~~~~~g~~fV~f~~~~~a~  157 (213)
T 4f02_A          100 ---------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAE  157 (213)
T ss_dssp             ---------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTEEEEEEEEEESSHHHHH
T ss_pred             ---------------------ccccccceECCcccccHHHHHHHHHhhcC-CeEEEEeeccCCCCceEEEEEeCCHHHHH
Confidence                                 00355799999999999999999999999 9999998753   3689999999999999


Q ss_pred             HHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        153 TALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       153 ~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +|++.|||..|+| ++|+|.|++++
T Consensus       158 ~Ai~~lng~~~~g-~~i~V~~a~~~  181 (213)
T 4f02_A          158 RAIEKMNGMLLND-RKVFVGRFKSR  181 (213)
T ss_dssp             HHHHHHTTCEETT-EECEEEECCCH
T ss_pred             HHHHHhCCCEECC-EEEEEEEcCCC
Confidence            9999999999999 89999999865

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=100.00  E-value=1e-31  Score=190.57  Aligned_cols=137  Identities=20%  Similarity=0.359  Sum_probs=120.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.++++|..|++.|+|..+.|++|.|.++......             
T Consensus        19 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~-------------   85 (167)
T 1fxl_A           19 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS-------------   85 (167)
T ss_dssp             HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG-------------
T ss_pred             HHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc-------------
Confidence            5789999999999999873     3489999999999999999999999999999999988622110             


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~  150 (184)
                                            .+..+|+|+|||+.+++++|+++|++|| .|..+++....     +|+|||+|.+.++
T Consensus        86 ----------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~  142 (167)
T 1fxl_A           86 ----------------------IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIE  142 (167)
T ss_dssp             ----------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred             ----------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC-CEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence                                  1456899999999999999999999999 99999987642     6899999999999


Q ss_pred             HHHHHHHhcCeecCCCCe--EEEEec
Q psy17274        151 AITALIQMHNHQLSEQSH--LRVSFS  174 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~--l~v~~~  174 (184)
                      |.+|+..|||..+.| +.  |+|+|+
T Consensus       143 A~~A~~~l~g~~~~g-~~~~i~v~~A  167 (167)
T 1fxl_A          143 AEEAIKGLNGQKPSG-ATEPITVKFA  167 (167)
T ss_dssp             HHHHHHHHTTCCCTT-CSSCCEEEEC
T ss_pred             HHHHHHHhcCCccCC-CccceEEEeC
Confidence            999999999999999 54  899886

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.98  E-value=1.6e-31  Score=190.02  Aligned_cols=138  Identities=18%  Similarity=0.324  Sum_probs=121.4

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||+|.+|+++..     ++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.....              
T Consensus        20 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~--------------   85 (168)
T 1b7f_A           20 LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE--------------   85 (168)
T ss_dssp             HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS--------------
T ss_pred             HHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc--------------
Confidence            5789999999999998873     469999999999999999999999999999999998862211              


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~  150 (184)
                                           ..++++|+|+|||..+++++|+++|++|| .|..+.+....     +|+|||+|.+.++
T Consensus        86 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~  143 (168)
T 1b7f_A           86 ---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREE  143 (168)
T ss_dssp             ---------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred             ---------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC-cEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence                                 01567899999999999999999999999 99999987632     4899999999999


Q ss_pred             HHHHHHHhcCeecCCC-CeEEEEec
Q psy17274        151 AITALIQMHNHQLSEQ-SHLRVSFS  174 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~-~~l~v~~~  174 (184)
                      |.+|+..|||..+.|. ++|+|+|+
T Consensus       144 A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          144 AQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHhcCCEecCCCeEEEEEeC
Confidence            9999999999999652 59999986

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.97  E-value=3.9e-31  Score=195.25  Aligned_cols=153  Identities=14%  Similarity=0.244  Sum_probs=126.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|.+|++.|||..+.|++|.|.++.......+.        ..
T Consensus        45 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~--------~~  116 (216)
T 2qfj_A           45 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI--------ID  116 (216)
T ss_dssp             HHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHH--------HH
T ss_pred             HHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchh--------hh
Confidence            578999999999999976     26899999999999999999999999999999999876532211000        00


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~  150 (184)
                      ..                .....+.++|||+|||..+|+++|+++|++|| .|..+++....     +++|||+|.+.++
T Consensus       117 ~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~  179 (216)
T 2qfj_A          117 QL----------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFG-KIKSATLARDPTTGKHKGYGFIEYEKAQS  179 (216)
T ss_dssp             HH----------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred             hh----------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccC-CeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence            00                00011567899999999999999999999999 99999998632     6899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSNIQ  179 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~~  179 (184)
                      |.+|+..|||..++| +.|+|.|++.+..
T Consensus       180 A~~A~~~l~g~~~~g-~~i~V~~a~~~~~  207 (216)
T 2qfj_A          180 SQDAVSSMNLFDLGG-QYLRVGKAVTPPM  207 (216)
T ss_dssp             HHHHHHHHTTCBCSS-SBCEEEECSSCSS
T ss_pred             HHHHHHHccCCEeCC-cEEEEEEecCCCC
Confidence            999999999999999 8999999998743

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.97  E-value=3.8e-30  Score=187.54  Aligned_cols=160  Identities=19%  Similarity=0.279  Sum_probs=126.0

Q ss_pred             ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC
Q psy17274          1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP   69 (184)
Q Consensus         1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~   69 (184)
                      |.++|++|    |       .|.++++. .++|||||+|.+.++|++|+ .|||..+.|++|.|.+++.........   
T Consensus        21 l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~---   95 (198)
T 2yh0_A           21 MMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMS---   95 (198)
T ss_dssp             HHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSS---
T ss_pred             HHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCc---
Confidence            56899999    5       77787764 46899999999999999999 899999999999999886442211000   


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEE
Q psy17274         70 DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQ  144 (184)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~  144 (184)
                      ....           ...|+. .......+.++|||+|||..+++++|+++|++|| .|..+++..+.     +|+|||+
T Consensus        96 ~~~~-----------~~~~~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~  162 (198)
T 2yh0_A           96 ENPS-----------VYVPGV-VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCE  162 (198)
T ss_dssp             SCSS-----------CCCTTS-SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS-CEEEEEEEECTTTCSEEEEEEEE
T ss_pred             CCCc-----------CCCCCC-ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CccEEEEeecCCCCCcceEEEEE
Confidence            0000           000000 0011123678999999999999999999999999 99999987642     6899999


Q ss_pred             eCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274        145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQ  179 (184)
Q Consensus       145 f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~  179 (184)
                      |.+.++|.+|+..|||..++| +.|+|+|++++..
T Consensus       163 f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~~  196 (198)
T 2yh0_A          163 YVDINVTDQAIAGLNGMQLGD-KKLLVQRASVGAK  196 (198)
T ss_dssp             ESSSSHHHHHHHHHTTCEETT-EECEEEESCCCCC
T ss_pred             ECCHHHHHHHHHHcCCCEECC-EEEEEEECCCCCC
Confidence            999999999999999999999 8999999987654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.97  E-value=1.6e-30  Score=185.84  Aligned_cols=140  Identities=19%  Similarity=0.306  Sum_probs=118.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-------CCCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCccccCCCCCCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-------KKDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQAVQLPKEGQPD   70 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~~~~~~~~~~~~   70 (184)
                      |.++|++||+|.+|++++.       ++|||||+|.+.++|+.|++.|+|..+.   ++++.+.++......        
T Consensus        20 l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------   91 (175)
T 3nmr_A           20 LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--------   91 (175)
T ss_dssp             HHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS--------
T ss_pred             HHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc--------
Confidence            5789999999999999872       4689999999999999999999998876   577777766522110        


Q ss_pred             CCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeC
Q psy17274         71 AGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLD  146 (184)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~  146 (184)
                                                ..+.++|||+|||+.+|+++|+++|++|| .|..+++..+    .+|+|||+|.
T Consensus        92 --------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~~~g~~~g~afV~f~  144 (175)
T 3nmr_A           92 --------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG-QIEECRILRGPDGLSRGCAFVTFT  144 (175)
T ss_dssp             --------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEES
T ss_pred             --------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC-CEEEEEEEECCCCCEEEEEEEEEC
Confidence                                      01467899999999999999999999999 9999999764    2679999999


Q ss_pred             CHHHHHHHHHHhcCeecCCC--CeEEEEecC
Q psy17274        147 SIEEAITALIQMHNHQLSEQ--SHLRVSFSK  175 (184)
Q Consensus       147 ~~~~A~~Ai~~lng~~i~g~--~~l~v~~~~  175 (184)
                      +.++|.+|+..|||..+.+.  ++|+|+|+.
T Consensus       145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            99999999999999988631  799999973

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.97  E-value=2.7e-30  Score=184.41  Aligned_cols=136  Identities=21%  Similarity=0.351  Sum_probs=119.1

Q ss_pred             ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC
Q psy17274          1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP   69 (184)
Q Consensus         1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~   69 (184)
                      |.++|++|    |       .|.++++.+ ++|+|||+|.++++|.+|+ .|||..+.|++|.|.++.....        
T Consensus        21 l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~--------   90 (172)
T 2g4b_A           21 MMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP--------   90 (172)
T ss_dssp             HHHHHHHHHHHTTCCSSSSCSEEEEEEET-TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC--------
T ss_pred             HHHHHHHHhhhcccccCCCCceeeeEecC-CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC--------
Confidence            46889999    7       888888654 6899999999999999999 8999999999999987652110        


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEE
Q psy17274         70 DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQ  144 (184)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~  144 (184)
                                                 ..+.++|+|+|||..+|+++|+++|++|| .|..+++..+.     +|+|||+
T Consensus        91 ---------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~  142 (172)
T 2g4b_A           91 ---------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCE  142 (172)
T ss_dssp             ---------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCSEEEEEEEE
T ss_pred             ---------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcC-CceEEEEEecCCCCCcceEEEEE
Confidence                                       00356799999999999999999999999 99999997642     6899999


Q ss_pred             eCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       145 f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      |.+.++|.+|+..|||..++| ++|+|+|+.
T Consensus       143 f~~~~~A~~A~~~l~g~~~~g-~~l~V~~As  172 (172)
T 2g4b_A          143 YVDINVTDQAIAGLNGMQLGD-KKLLVQRAS  172 (172)
T ss_dssp             ESSTTHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             eCCHHHHHHHHHHcCCCEECC-eEEEEEeCC
Confidence            999999999999999999999 899999974

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.97  E-value=3e-30  Score=187.79  Aligned_cols=145  Identities=14%  Similarity=0.226  Sum_probs=119.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|++. +|..+.|+.|.|.++.......            
T Consensus        30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~------------   96 (196)
T 1l3k_A           30 LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQ------------   96 (196)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------------
T ss_pred             HHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccccc------------
Confidence            5789999999999999873     468999999999999999966 9999999999999886332110            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                 .+      ....+.++|||+|||+++|+++|+++|++|| .|..+++...     .+|+|||+|.+.++
T Consensus        97 -----------~~------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~  158 (196)
T 1l3k_A           97 -----------RP------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDS  158 (196)
T ss_dssp             -----------------------CCSEEEEECCTTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred             -----------cc------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCccceEEEEECCHHH
Confidence                       00      0111567899999999999999999999999 9999999863     26899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      |.+|+.. +|..++| +.|+|.|+.++.
T Consensus       159 A~~A~~~-~~~~~~G-~~i~v~~a~~k~  184 (196)
T 1l3k_A          159 VDKIVIQ-KYHTVNG-HNCEVRKALSKQ  184 (196)
T ss_dssp             HHHHHHC-SCCEETT-EECEEEECC---
T ss_pred             HHHHHHh-CCcEECC-EEEEEEecCChh
Confidence            9999986 8999999 899999998763

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.97  E-value=6.9e-31  Score=188.17  Aligned_cols=141  Identities=16%  Similarity=0.237  Sum_probs=116.1

Q ss_pred             ChhhhccCCCeeEEEEe----eCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274          1 MFSLTGVYGDVLRVKIL----YNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD   76 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~----~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~   76 (184)
                      |.++|+.||.|..+.+.    ..++|||||+|.++++|.+|+ .|||..+.|++|.|.++......              
T Consensus        30 l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~--------------   94 (175)
T 1fje_B           30 LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSK--------------   94 (175)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCS--------------
T ss_pred             HHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcccc--------------
Confidence            45688888876552221    147899999999999999999 59999999999999988632110              


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHH
Q psy17274         77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI  156 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~  156 (184)
                                         ...++++|||+|||..+|+++|+++|++|| .|..+......+|+|||+|.+.++|.+|+.
T Consensus        95 -------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g-~v~~~~~~~~~~g~afV~f~~~~~A~~A~~  154 (175)
T 1fje_B           95 -------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL-EIRLVSQDGKSKGIAYIEFKSEADAEKNLE  154 (175)
T ss_dssp             -------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS-EEEEECSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred             -------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC-eEEEecCCCCCceEEEEEECCHHHHHHHHH
Confidence                               001567899999999999999999999999 887661112357999999999999999999


Q ss_pred             HhcCeecCCCCeEEEEecCcc
Q psy17274        157 QMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       157 ~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .|||..++| +.|+|+|++++
T Consensus       155 ~l~g~~~~g-~~i~v~~a~~k  174 (175)
T 1fje_B          155 EKQGAEIDG-RSVSLYYTGEK  174 (175)
T ss_dssp             HHTEEEETT-EEEEEEECSSC
T ss_pred             HhCCCEECC-eEEEEEecCCC
Confidence            999999999 89999999864

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.97  E-value=2.3e-30  Score=183.95  Aligned_cols=137  Identities=14%  Similarity=0.216  Sum_probs=119.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|++++     .++|||||+|.+.++|..|++.  +..+.|+.|.+.++......             
T Consensus        20 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~-------------   84 (167)
T 2cjk_A           20 LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQ-------------   84 (167)
T ss_dssp             HHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHH-------------
T ss_pred             HHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhc-------------
Confidence            568999999999999886     2579999999999999999984  67899999998877522110             


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                            .++++|||+|||+++|+++|+++|++|| .|..+++..+     ++|+|||+|.+.++
T Consensus        85 ----------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~  141 (167)
T 2cjk_A           85 ----------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG-TIIDAQLMLDKDTGQSRGFGFVTYDSADA  141 (167)
T ss_dssp             ----------------------HHCEEEEEEEECTTCCHHHHHHHHHTTS-CCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred             ----------------------cCCCeEEECCCCCCCCHHHHHHHHHhCc-cEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence                                  0456899999999999999999999999 9999998753     36899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      |.+|++ +||..++| +.|+|.|++++
T Consensus       142 a~~A~~-~~~~~~~g-~~i~V~~a~pk  166 (167)
T 2cjk_A          142 VDRVCQ-NKFIDFKD-RKIEIKRAEPR  166 (167)
T ss_dssp             HHHHHH-CSEECSSS-SCEEEEECCCC
T ss_pred             HHHHHh-CCCEEeCC-eEEEEeecCCC
Confidence            999998 89999999 89999999875

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.97  E-value=1e-29  Score=195.22  Aligned_cols=144  Identities=19%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.......            
T Consensus       112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~------------  179 (284)
T 3smz_A          112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP------------  179 (284)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT------------
T ss_pred             HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc------------
Confidence            4689999999999998862     46899999999999999999999999999999999986332210            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCC-CHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASV-TEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~  150 (184)
                                          ...+.++|||+|||+++ |+++|+++|++|| .|..+++..+    .+|+|||+|.+.++
T Consensus       180 --------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~  238 (284)
T 3smz_A          180 --------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH-SPTFCQLACGQDGQLKGFAVLEYETAEM  238 (284)
T ss_dssp             --------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS-CCSEEEEEECSSCCEEEEEEEECSSHHH
T ss_pred             --------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC-CeEEEEEEECCCCCcccEEEEEeCCHHH
Confidence                                00157789999999996 9999999999999 9999998763    26899999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      |.+|+..|||..++| ++|+|+|+++..
T Consensus       239 A~~A~~~l~g~~~~g-~~l~v~~a~~~~  265 (284)
T 3smz_A          239 AEEAQQQADGLSLGG-SHLRVSFCAPGP  265 (284)
T ss_dssp             HHHHHHHHTTCEETT-EECEEEECCSSS
T ss_pred             HHHHHHHhCCCccCC-eEEEEEEecCCC
Confidence            999999999999999 899999998763

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.96  E-value=3.2e-29  Score=193.19  Aligned_cols=146  Identities=16%  Similarity=0.258  Sum_probs=123.1

Q ss_pred             ChhhhccCC-CeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYG-DVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG-~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++|| .|.+|+++.    .++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.......            
T Consensus       134 l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~------------  201 (292)
T 2ghp_A          134 IRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK------------  201 (292)
T ss_dssp             HHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------
T ss_pred             HHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc------------
Confidence            568999999 999999876    368999999999999999999999999999999999987332210            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSI  148 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~  148 (184)
                              +.        .....++++|||+|||+. +|+++|+++|++|| .|..|++..+      .+|+|||+|.+.
T Consensus       202 --------~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~tg~~~g~afV~F~~~  264 (292)
T 2ghp_A          202 --------RT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFG-SIEKINIPAGQKEHSFNNCCAFMVFENK  264 (292)
T ss_dssp             ---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS-CEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred             --------cc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccC-CeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence                    00        001126789999999999 99999999999999 9999998753      368999999999


Q ss_pred             HHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        149 EEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       149 ~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++|.+|+ .|||..++| +.|+|+|++++
T Consensus       265 ~~A~~A~-~l~g~~~~g-~~i~V~~a~~k  291 (292)
T 2ghp_A          265 DSAERAL-QMNRSLLGN-REISVSLADKK  291 (292)
T ss_dssp             HHHHHHG-GGTTEEETT-EEEEEEECCCC
T ss_pred             HHHHHHH-HhcCCEECC-cEEEEEEecCC
Confidence            9999999 999999999 89999999875

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.96  E-value=1.4e-28  Score=188.98  Aligned_cols=133  Identities=16%  Similarity=0.245  Sum_probs=121.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.++|+.|| |.++++ ..++|+|||+|.++++|..|++.|||..+.|++|.|.++.                       
T Consensus        39 l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-----------------------   93 (284)
T 3smz_A           39 VHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-----------------------   93 (284)
T ss_dssp             HHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----------------------
T ss_pred             HHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----------------------
Confidence            578999999 999987 5578999999999999999999999999999999998753                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHH
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITAL  155 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai  155 (184)
                                        +..+|||+|||+.+|+++|+++|++|| .|..+++..+     ++|+|||+|.+.++|..|+
T Consensus        94 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~  154 (284)
T 3smz_A           94 ------------------TDALLCVANLPPSLTQQQFEELVRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK  154 (284)
T ss_dssp             ------------------CSCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred             ------------------CCCEEEEcCCCCcCCHHHHHHHHHhcC-CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence                              356899999999999999999999999 8999988753     2589999999999999999


Q ss_pred             HHhcCeecCCCCeEEEEecCccc
Q psy17274        156 IQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       156 ~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ..|||..++| +.|+|.|+....
T Consensus       155 ~~l~~~~~~g-~~i~v~~a~~~~  176 (284)
T 3smz_A          155 SDLLGKPLGP-RTLYVHWTDAGQ  176 (284)
T ss_dssp             HHHTTCEETT-EECEEEECCGGG
T ss_pred             HHhCCCEeCC-cEEEEEECCCCC
Confidence            9999999999 899999998764

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.96  E-value=6.9e-29  Score=188.79  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=119.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.++|++||.|.+|++.+ ++|+|||+|.+.++|..|++.|||..+.|++|.|.++.                       
T Consensus        39 l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~-----------------------   94 (261)
T 3sde_A           39 FKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT-----------------------   94 (261)
T ss_dssp             HHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-----------------------
T ss_pred             HHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-----------------------
Confidence            568999999999999865 67999999999999999999999999999999999886                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHH
Q psy17274         81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALI  156 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~  156 (184)
                                        ++.+|||+|||+.+|+++|+++|++|| .|..|.+..+    ++|+|||+|.+.++|.+|+.
T Consensus        95 ------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~  155 (261)
T 3sde_A           95 ------------------HGAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE  155 (261)
T ss_dssp             ------------------CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHH
T ss_pred             ------------------cCCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHH
Confidence                              456899999999999999999999999 9999998763    36899999999999999999


Q ss_pred             Hhc-CeecC---CCCeEEEEecCcc
Q psy17274        157 QMH-NHQLS---EQSHLRVSFSKSN  177 (184)
Q Consensus       157 ~ln-g~~i~---g~~~l~v~~~~~~  177 (184)
                      .|| |..+.   + ++|.|.++...
T Consensus       156 ~l~~~~~~~~~~~-r~i~v~~~~~~  179 (261)
T 3sde_A          156 RCGDGAFLLTTTP-RPVIVEPMEQF  179 (261)
T ss_dssp             HHHHSCEESSSSC-CBCEEEECCCE
T ss_pred             HhcCCeEEecCCC-ceEEEeecccc
Confidence            995 44444   7 89999998765

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.95  E-value=9.4e-28  Score=184.96  Aligned_cols=133  Identities=17%  Similarity=0.203  Sum_probs=119.3

Q ss_pred             ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |.++|+.||+|.+|+++..   ++|+|||+|.+.++|.+|+ .+||..+.|++|.|.++                     
T Consensus        58 l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~---------------------  115 (292)
T 2ghp_A           58 VYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL---------------------  115 (292)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC---------------------
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC---------------------
Confidence            5789999999999999873   5799999999999999999 59999999999999865                     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAIT  153 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~  153 (184)
                                           +.++|||+|||+.+++++|+++|++||..|..+.+...    .+|+|||+|.+.++|.+
T Consensus       116 ---------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~  174 (292)
T 2ghp_A          116 ---------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY  174 (292)
T ss_dssp             ---------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred             ---------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence                                 25579999999999999999999999956888888652    47999999999999999


Q ss_pred             HHHHhcCeecCCCCeEEEEecCcc
Q psy17274        154 ALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       154 Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      |+..|||..+.| +.|+|.|+.+.
T Consensus       175 A~~~l~g~~~~g-~~l~v~~a~~~  197 (292)
T 2ghp_A          175 CVEKLNGLKIEG-YTLVTKVSNPL  197 (292)
T ss_dssp             HHHHHTTCEETT-EECEEEECCCC
T ss_pred             HHHHhCCCEeCC-cEEEEEECCCC
Confidence            999999999999 89999998765

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.95  E-value=5.6e-27  Score=164.24  Aligned_cols=138  Identities=13%  Similarity=0.154  Sum_probs=112.1

Q ss_pred             CCCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q psy17274         19 NKKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIY   97 (184)
Q Consensus        19 ~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (184)
                      ..+|+++|+|.++++|++|++.| ||..+.| +|.+.++............                   +.........
T Consensus        11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~   70 (150)
T 2i2y_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDSC   70 (150)
T ss_dssp             SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSSS
T ss_pred             cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccCC
Confidence            35799999999999999999999 9999999 9999877643221100000                   0000001122


Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+.++|||+|||+.+|+++|+++|++|| .|..|++..+++|+|||+|.+.++|..|+..|||..+.| ++|+|+|++++
T Consensus        71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~  148 (150)
T 2i2y_A           71 PLDCKVYVGNLGNNGNKTELERAFGYYG-PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG-CRVRVELSNGE  148 (150)
T ss_dssp             TTSCEEEEESCCSCCSCHHHHHHHHHHS-CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSS-SCCEEEECCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEcCCC
Confidence            2678999999999999999999999999 999999987679999999999999999999999999999 89999999875


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus       149 ~  149 (150)
T 2i2y_A          149 K  149 (150)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.93  E-value=2.4e-25  Score=157.08  Aligned_cols=140  Identities=14%  Similarity=0.167  Sum_probs=104.6

Q ss_pred             EEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCC
Q psy17274         14 VKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGS   90 (184)
Q Consensus        14 v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (184)
                      ++++.   .++|||||+|.++++|++|++.+++....+..+.+.............                .      .
T Consensus         3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~------~   60 (158)
T 2kn4_A            3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------H------H   60 (158)
T ss_dssp             EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------C------C
T ss_pred             EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------c------c
Confidence            44444   468999999999999999999988754444443333211110000000                0      0


Q ss_pred             CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         91 KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        91 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      ........+..+|||+|||+.+|+++|+++|++|| .|..|++..+     .+|+|||+|.+.++|.+|+..|||..++|
T Consensus        61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g  139 (158)
T 2kn4_A           61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG  139 (158)
T ss_dssp             SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred             cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            00001112578999999999999999999999999 9999998753     46899999999999999999999999999


Q ss_pred             CCeEEEEecCcc
Q psy17274        166 QSHLRVSFSKSN  177 (184)
Q Consensus       166 ~~~l~v~~~~~~  177 (184)
                       +.|+|.|++++
T Consensus       140 -~~l~v~~a~~~  150 (158)
T 2kn4_A          140 -RELRVQMARYG  150 (158)
T ss_dssp             -SEEEEEEECCS
T ss_pred             -eEEEEEECCCC
Confidence             89999999876

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=133.83  Aligned_cols=77  Identities=26%  Similarity=0.434  Sum_probs=72.3

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCee--cCCCCeEEEEecC
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ--LSEQSHLRVSFSK  175 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~--i~g~~~l~v~~~~  175 (184)
                      +|+++|||+|||+++|+++|+++|++|| .|.++.+.+ .||+|||+|++.++|..|+..|||..  +.| ++|+|+||+
T Consensus        19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG-~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G-r~i~V~~S~   95 (100)
T 3r27_A           19 PASPVVHIRGLIDGVVEADLVEALQEFG-PISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAG-HPAFVNYST   95 (100)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETT-EEEEEEECS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHhccC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCC-cEEEEEecc
Confidence            4899999999999999999999999999 999999884 89999999999999999999999986  789 899999998


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ++
T Consensus        96 ~k   97 (100)
T 3r27_A           96 SQ   97 (100)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=131.74  Aligned_cols=76  Identities=20%  Similarity=0.399  Sum_probs=70.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+++|||+|||+++|+++|+++|++|| .|.++++..+     .+|+|||+|.+.++|.+|++.|||..++| ++|+|+|
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-r~l~V~~   95 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-KTIKVSY   95 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            567899999999999999999999999 9999998753     25899999999999999999999999999 8999999


Q ss_pred             cCc
Q psy17274        174 SKS  176 (184)
Q Consensus       174 ~~~  176 (184)
                      +++
T Consensus        96 AkP   98 (99)
T 4fxv_A           96 ARP   98 (99)
T ss_dssp             CCB
T ss_pred             eeC
Confidence            985

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.88  E-value=5.4e-22  Score=129.63  Aligned_cols=83  Identities=24%  Similarity=0.302  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh--cCeecCCCCeEEEEe
Q psy17274         96 IYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM--HNHQLSEQSHLRVSF  173 (184)
Q Consensus        96 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l--ng~~i~g~~~l~v~~  173 (184)
                      ..+|+++|||+|||+.+++++|+++|++|| .|..|.+.+ ++|+|||+|++.++|..|++.|  ++..+.| ++|+|.|
T Consensus        11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG-~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~   87 (101)
T 2cq1_A           11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRN-QPIYIQY   87 (101)
T ss_dssp             CSSCCSEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-cEEEEEE
Confidence            334889999999999999999999999999 999998875 6999999999999999999987  4678999 8999999


Q ss_pred             cCcccccc
Q psy17274        174 SKSNIQDI  181 (184)
Q Consensus       174 ~~~~~~~~  181 (184)
                      ++.+....
T Consensus        88 a~~~~~~~   95 (101)
T 2cq1_A           88 SNHKELKT   95 (101)
T ss_dssp             CSCSSCCC
T ss_pred             cCcccCcC
Confidence            99875443

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.88  E-value=5.8e-22  Score=130.21  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=72.7

Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe--ecCCCCeEEEEec
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH--QLSEQSHLRVSFS  174 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~--~i~g~~~l~v~~~  174 (184)
                      .+|+++|||+|||+.+++++|+++|++|| .|..|.+.+ .+++|||+|++.++|.+|++.||+.  .+.| ++|+|+|+
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG-~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G-r~l~V~~a   88 (104)
T 1wex_A           12 VSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG-QQAFFNYS   88 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS-SBCEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEc
Confidence            34789999999999999999999999999 999998875 7999999999999999999999765  4999 89999999


Q ss_pred             Ccccc
Q psy17274        175 KSNIQ  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      +.+..
T Consensus        89 ~~~~~   93 (104)
T 1wex_A           89 TSKRI   93 (104)
T ss_dssp             SSSSC
T ss_pred             cCccc
Confidence            87643

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.88  E-value=2.2e-22  Score=131.77  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l~v~~~~~  176 (184)
                      ++++|||+|||+++|+++|+++|++|| .|.+|++++ ++|+|||+|++.++|..|++.|+  +..+.| ++|+|+|++.
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~A~~   91 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFSNH   91 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETT-EECCBCCCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEcCC
Confidence            688999999999999999999999999 999999985 79999999999999999999886  478999 8999999998


Q ss_pred             cccc
Q psy17274        177 NIQD  180 (184)
Q Consensus       177 ~~~~  180 (184)
                      +...
T Consensus        92 ~~~~   95 (105)
T 1sjq_A           92 KELK   95 (105)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7443

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.87  E-value=5.3e-22  Score=129.68  Aligned_cols=76  Identities=13%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe--ecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH--QLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~--~i~g~~~l~v~~~~  175 (184)
                      |+++|||+|||+ .+|+++|+++|++|| .|.+|.+++ ++++|||+|++.++|..|+..||+.  .+.| ++|+|.|++
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG-~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~a~   90 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFG-KPVRVHLSQ   90 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECC-cEEEEEECC
Confidence            789999999999 999999999999999 999999884 7899999999999999999999975  5999 899999998


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ..
T Consensus        91 ~~   92 (102)
T 1x4d_A           91 KY   92 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.87  E-value=1.3e-21  Score=130.96  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=73.9

Q ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC--eecCCCCeEEEEec
Q psy17274         97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN--HQLSEQSHLRVSFS  174 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng--~~i~g~~~l~v~~~  174 (184)
                      .+|+++|||+|||+++|+++|+++|++|| .|.+|++.+ ++|+|||+|++.++|.+|++.|++  ..+.| ++|+|+|+
T Consensus        28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG-~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-r~l~V~~a  104 (119)
T 2ad9_A           28 GVPSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFS  104 (119)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHHHTTTS-CCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTT-BCCEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-eEEEEEEc
Confidence            34789999999999999999999999999 999999885 689999999999999999999985  68999 89999999


Q ss_pred             Cccccc
Q psy17274        175 KSNIQD  180 (184)
Q Consensus       175 ~~~~~~  180 (184)
                      +.+...
T Consensus       105 ~~k~~~  110 (119)
T 2ad9_A          105 NHKELK  110 (119)
T ss_dssp             SSSSCC
T ss_pred             cCCCCC
Confidence            987443

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.86  E-value=2e-21  Score=122.03  Aligned_cols=74  Identities=22%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .+.-|+|+||++.+|+++|+++|.+|| +|.++++.. ++|+|||+|.+.++|.+|++.|||..+.| ++|+|.++.
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G-~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-r~I~V~~A~   79 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHG-PLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLAN-TTIFAESPS   79 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEECCC
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhC-CEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEECC
Confidence            456799999999999999999999999 999999875 89999999999999999999999999999 899999985

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.86  E-value=1.9e-21  Score=128.85  Aligned_cols=78  Identities=17%  Similarity=0.322  Sum_probs=71.5

Q ss_pred             CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC--eecCCCCeEEEEe
Q psy17274         97 YPPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN--HQLSEQSHLRVSF  173 (184)
Q Consensus        97 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng--~~i~g~~~l~v~~  173 (184)
                      .+|+++|||+|||++ +++++|+++|++|| .|.+|.+. +++++|||+|++.++|..|+..||+  ..+.| ++|+|+|
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG-~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~   98 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQG-RCVKVDL   98 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS-SCCEEEE
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcC-CEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEE
Confidence            447899999999998 99999999999999 99999987 4799999999999999999999865  56999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus        99 a~~~  102 (112)
T 1x4f_A           99 SEKY  102 (112)
T ss_dssp             ECSC
T ss_pred             Cccc
Confidence            9865

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=126.01  Aligned_cols=79  Identities=15%  Similarity=0.368  Sum_probs=69.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEe
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSF  173 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~  173 (184)
                      +++|||+|||+++|+++|+++|++||..|.+|+++.     .++|+|||+|.+.++|.+|++.| |+..++| ++|+|.|
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g-r~i~V~~   79 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG-QKVSMHY   79 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-EEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC-EEEEEEE
Confidence            468999999999999999999999995588898875     24799999999999999999987 4668999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++++..
T Consensus        80 a~~~~~   85 (91)
T 2lxi_A           80 SDPKPK   85 (91)
T ss_dssp             CCSCCC
T ss_pred             cCCCCC
Confidence            987754

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.85  E-value=3.9e-21  Score=127.60  Aligned_cols=77  Identities=14%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |.++|||+|||+.+++++|+++|++|| .|.+|+|..+     ++|+|||+|++.++|.+|++.|||..+.| +.|+|.+
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-r~i~V~~   82 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRKYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG-NIIHAQL   82 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence            678999999999999999999999999 9999998752     36899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus        83 a~~~   86 (110)
T 3s8s_A           83 DIKG   86 (110)
T ss_dssp             CSTT
T ss_pred             CCCC
Confidence            9765

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.85  E-value=1.8e-21  Score=133.87  Aligned_cols=120  Identities=17%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             CeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17274         22 DSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSP  101 (184)
Q Consensus        22 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (184)
                      -++|++|++...|..|++.++|..-.|+.- ..++.                             .+.      ...+++
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------~~~------~~~~~~   48 (135)
T 2lea_A            5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------PPP------DVEGMT   48 (135)
T ss_dssp             -------------------------------CCSCC-----------------------------SCS------SGGGCC
T ss_pred             ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------CCC------CCCCCC
Confidence            467899999999999999999876555430 00000                             000      011567


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      +|||+|||..+|+++|+++|++|| .|..|++..+     .+|+|||+|.+.++|.+|+..|||..+.| ++|+|.|++.
T Consensus        49 ~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~a~~  126 (135)
T 2lea_A           49 SLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-RELRVQMARY  126 (135)
T ss_dssp             CEEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-SCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence            899999999999999999999999 9999998752     36899999999999999999999999999 8999999987


Q ss_pred             ccc
Q psy17274        177 NIQ  179 (184)
Q Consensus       177 ~~~  179 (184)
                      +..
T Consensus       127 ~~~  129 (135)
T 2lea_A          127 GRP  129 (135)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=3.4e-20  Score=121.59  Aligned_cols=80  Identities=19%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+   ++++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~   91 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG-KEVKVNWAT   91 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECC
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-CeEEEEECC
Confidence            678999999999999999999999999 9999998863   46899999999999999999999999999 899999999


Q ss_pred             ccccc
Q psy17274        176 SNIQD  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      .+...
T Consensus        92 ~~~~~   96 (103)
T 2cqi_A           92 TPSSQ   96 (103)
T ss_dssp             CTTCC
T ss_pred             CCccc
Confidence            87543

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.85  E-value=9.4e-21  Score=119.88  Aligned_cols=75  Identities=21%  Similarity=0.361  Sum_probs=70.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..+.+..+     .+++|||+|.+.++|.+|++.|||..++| ++|+|+|
T Consensus         6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~   83 (85)
T 3mdf_A            6 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL   83 (85)
T ss_dssp             CSSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence            678999999999999999999999999 9999988653     37899999999999999999999999999 8999999


Q ss_pred             cC
Q psy17274        174 SK  175 (184)
Q Consensus       174 ~~  175 (184)
                      ++
T Consensus        84 ak   85 (85)
T 3mdf_A           84 AK   85 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.85  E-value=8e-21  Score=127.13  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=70.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      +.+|||+|||+++|+++|+++|++|| .|.+|+|..+   ++|+|||+|.+.++|.+|++.|||..++| +.|+|.+++.
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-~~i~V~~a~~   82 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFKS   82 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESSC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccC-CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence            56799999999999999999999999 9999998763   26899999999999999999999999999 8999999876


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      +
T Consensus        83 ~   83 (115)
T 4f25_A           83 R   83 (115)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.84  E-value=1.3e-20  Score=122.71  Aligned_cols=78  Identities=24%  Similarity=0.439  Sum_probs=73.3

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++.++|||+|||+.+|+++|+++|++|| .|..+++. .++++|||+|.+.++|.+|+..|||..+.| ++|+|.|++.+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~~~   89 (99)
T 2cpj_A           13 TQRSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRG-KQLRVRFACHS   89 (99)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTT-BCCEEEESSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCC-ceEEEEEcCCC
Confidence            3678999999999999999999999999 99999987 479999999999999999999999999999 89999999876


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus        90 ~   90 (99)
T 2cpj_A           90 A   90 (99)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.84  E-value=1.5e-20  Score=121.72  Aligned_cols=78  Identities=22%  Similarity=0.402  Sum_probs=72.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |+++|||+|||..+++++|+++|++|| .|..+++..+     .+|+|||+|.+.++|.+|++.|||..++| +.|+|.|
T Consensus         1 P~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~   78 (96)
T 2x1f_A            1 PSRVVYLGSIPYDQTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-RFLKCGY   78 (96)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEE
Confidence            578999999999999999999999999 9999998753     27899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus        79 a~~~~   83 (96)
T 2x1f_A           79 SSNSD   83 (96)
T ss_dssp             CSCSS
T ss_pred             cCCCC
Confidence            98773

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=119.77  Aligned_cols=77  Identities=13%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||.++++++|+++|++|| .|.++++..+     .+++|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus         5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~   82 (87)
T 3bs9_A            5 SHFHVFVGDLSPEITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNW   82 (87)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEe
Confidence            577899999999999999999999999 9999998763     26899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++++
T Consensus        83 a~~k   86 (87)
T 3bs9_A           83 ATRK   86 (87)
T ss_dssp             EC--
T ss_pred             cCCC
Confidence            9875

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.84  E-value=1.9e-20  Score=121.47  Aligned_cols=77  Identities=23%  Similarity=0.418  Sum_probs=72.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC--CCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS--EQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~--g~~~l~v~~~~~  176 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..+.+.. .+++|||+|.+.++|.+|+..|||..+.  | +.|+|.|+++
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g-~~l~V~~a~~   92 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPD-RRLRVDFAKS   92 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSS-CBCEEEECCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCC-cEEEEEECCC
Confidence            678999999999999999999999999 999999885 6899999999999999999999999999  8 8999999987


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      +.
T Consensus        93 ~~   94 (97)
T 1why_A           93 GP   94 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=2e-20  Score=120.77  Aligned_cols=76  Identities=22%  Similarity=0.358  Sum_probs=70.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+.+++++|+++|++|| .|..+.+..+     .+++|||+|.+.++|.+|+..|||..+.| ++|+|.|
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~   91 (95)
T 2cqc_A           14 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRVSG   91 (95)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEe
Confidence            678999999999999999999999999 9999998753     25899999999999999999999999999 8999999


Q ss_pred             cCc
Q psy17274        174 SKS  176 (184)
Q Consensus       174 ~~~  176 (184)
                      +++
T Consensus        92 a~~   94 (95)
T 2cqc_A           92 PSS   94 (95)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            875

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.6e-20  Score=119.42  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=70.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~   92 (94)
T 2e5h_A           15 SKSTVYVSNLPFSLTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG-RVIKASI   92 (94)
T ss_dssp             CTTSEEEESCCTTSCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT-EEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEe
Confidence            678899999999999999999999999 9999998753     36899999999999999999999999999 8999999


Q ss_pred             cC
Q psy17274        174 SK  175 (184)
Q Consensus       174 ~~  175 (184)
                      ++
T Consensus        93 ak   94 (94)
T 2e5h_A           93 AI   94 (94)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=127.18  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |+++|||+|||+.+++++|+    ++|++|| .|..|.+..  ..+|+|||+|.+.++|..|+..|||..+.| ++|+|.
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G-~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-r~l~V~  105 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQG-DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG-NPLVIT  105 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT-SCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccCC-CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC-CEEEEE
Confidence            68899999999999999876    6999999 999998864  357999999999999999999999999999 899999


Q ss_pred             ecCccc
Q psy17274        173 FSKSNI  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      |++.+.
T Consensus       106 ~a~~~~  111 (127)
T 2a3j_A          106 FSETPQ  111 (127)
T ss_dssp             ECCCCC
T ss_pred             EccCcc
Confidence            999764

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=118.84  Aligned_cols=74  Identities=18%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+++.+ ++++|||+|.+.++|.+|+..| ||..+.| ++|+|.|++
T Consensus        11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g-~~l~v~~ak   85 (85)
T 2ytc_A           11 TITTLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNG-RRLNVKWGR   85 (85)
T ss_dssp             SCCCEEEECCTTTSCHHHHHHHHHTTS-CEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETT-EECCEEECC
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhCC-CEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECC-CEEEEEecC
Confidence            577899999999999999999999999 999999885 7899999999999999999999 9999999 899999986

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.84  E-value=2.2e-20  Score=126.64  Aligned_cols=83  Identities=29%  Similarity=0.403  Sum_probs=72.9

Q ss_pred             CCCE--EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCce-EEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEec
Q psy17274         99 PSPT--LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-ALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFS  174 (184)
Q Consensus        99 ~~~~--l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~-afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~  174 (184)
                      |+++  |||+||++.+|+++|+++|++|| .|.+|.++.+.+++ |||+|.+.++|..|++.|||..|.|. ++|+|+|+
T Consensus        25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG-~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a  103 (130)
T 3zzy_A           25 QSPVLRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS  103 (130)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTSS-CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred             CCceEEEEECCCCCCCCHHHHHHHHhCcC-CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence            4555  56999999999999999999999 99999998767787 99999999999999999999999872 48999999


Q ss_pred             Cccccccc
Q psy17274        175 KSNIQDIR  182 (184)
Q Consensus       175 ~~~~~~~~  182 (184)
                      +..-..+.
T Consensus       104 k~~~l~v~  111 (130)
T 3zzy_A          104 KLTSLNVK  111 (130)
T ss_dssp             SCSSCCCC
T ss_pred             CCCceeEE
Confidence            98754444

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.84  E-value=1.1e-20  Score=134.21  Aligned_cols=136  Identities=13%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             EEeCCHHHHHHHHHHhCCceec--CcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q psy17274         26 IQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTL  103 (184)
Q Consensus        26 V~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  103 (184)
                      .+|.+.++|..|+..|++....  |+.+....+.....          .......++... ...|.    .....++++|
T Consensus        11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~----------~~~~~~~~s~~~-~~~~~----~~~~~~~~~l   75 (165)
T 1rk8_A           11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAI----------HSYERVRNEDDD-ELEPG----PQRSVEGWIL   75 (165)
T ss_dssp             ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred             hhhhccccccccchhhccccccccCCCCCCCccccccc----------cCccccccCCCC-CCCCC----CCCCCCCCEE
Confidence            7899999999999999997665  55555544321100          000000000000 00000    0112257889


Q ss_pred             EEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        104 HLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       104 ~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ||+|||+.+++++|+++|++|| .|..|.+...     .+|+|||+|.+.++|..||..|||..|.| +.|+|.|++...
T Consensus        76 ~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~~  153 (165)
T 1rk8_A           76 FVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDWCFVKG  153 (165)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEESEECC
T ss_pred             EEeCCCCCCCHHHHHHHhhcCC-CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEecCCC
Confidence            9999999999999999999999 9999999863     26899999999999999999999999999 899999998664

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=2.4e-20  Score=122.03  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=73.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus        11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~   88 (102)
T 2cqb_A           11 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL   88 (102)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhccC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEe
Confidence            678899999999999999999999999 9999998753     47899999999999999999999999999 8999999


Q ss_pred             cCccccc
Q psy17274        174 SKSNIQD  180 (184)
Q Consensus       174 ~~~~~~~  180 (184)
                      ++++...
T Consensus        89 a~~~~~~   95 (102)
T 2cqb_A           89 AKPMRIK   95 (102)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9887543

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=4.3e-20  Score=119.64  Aligned_cols=79  Identities=25%  Similarity=0.446  Sum_probs=72.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..++|||+|||..+++++|+    ++|++|| .|.+|++..+  .+++|||+|.+.++|.+|++.|||..+.| ++|+|+
T Consensus         8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G-~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g-r~l~V~   85 (96)
T 2dgx_A            8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS-KKILVS   85 (96)
T ss_dssp             SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhccccC-cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEE
Confidence            46789999999999999999    9999999 9999999853  27899999999999999999999999999 899999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |++.+..
T Consensus        86 ~a~~~~~   92 (96)
T 2dgx_A           86 LATGASG   92 (96)
T ss_dssp             ECCCSSC
T ss_pred             EcCCCCC
Confidence            9987643

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=8.8e-20  Score=119.58  Aligned_cols=79  Identities=16%  Similarity=0.344  Sum_probs=73.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++..+   .+++|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~   91 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNAT   91 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcc
Confidence            678999999999999999999999999 9999999853   27899999999999999999999999999 899999999


Q ss_pred             cccc
Q psy17274        176 SNIQ  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      .+..
T Consensus        92 ~~~~   95 (103)
T 2cq3_A           92 ARVM   95 (103)
T ss_dssp             SSCC
T ss_pred             cCCC
Confidence            8754

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4.3e-20  Score=119.28  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=73.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~   81 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG-RPMRVGH   81 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEE
Confidence            678999999999999999999999999 9999998763     36899999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        82 a~~~~~   87 (95)
T 2dnz_A           82 VTERLD   87 (95)
T ss_dssp             SSCCCC
T ss_pred             cccccC
Confidence            987743

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=1e-19  Score=122.69  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=71.3

Q ss_pred             CCCEE--EEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCce-EEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEec
Q psy17274         99 PSPTL--HLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-ALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFS  174 (184)
Q Consensus        99 ~~~~l--~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~-afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~  174 (184)
                      |+++|  ||+|||+.+|+++|+++|++|| .|.+|.++.+ .|+ |||+|++.++|..|++.|||..|.|. +.|+|.|+
T Consensus        22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG-~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A   99 (124)
T 2e5i_A           22 GNKVLLLSIQNPLYPITVDVLYTVCNPVG-KVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA   99 (124)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTTS-CEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred             CCcEEEEEEcCcCCCCCHHHHHHHHHhcC-CEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence            66664  6899999999999999999999 9999999764 585 99999999999999999999999872 48999999


Q ss_pred             Ccccccc
Q psy17274        175 KSNIQDI  181 (184)
Q Consensus       175 ~~~~~~~  181 (184)
                      +.+...+
T Consensus       100 k~~~l~v  106 (124)
T 2e5i_A          100 RPTRLNV  106 (124)
T ss_dssp             SCSCCCC
T ss_pred             cCCccee
Confidence            9884443

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.3e-19  Score=120.02  Aligned_cols=78  Identities=15%  Similarity=0.347  Sum_probs=72.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++...  .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|++.
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~   98 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKYG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-YRLRVEFPRS   98 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT-EECEEECCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEccc
Confidence            678999999999999999999999999 9999998653  36899999999999999999999999999 8999999987


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      ..
T Consensus        99 ~~  100 (109)
T 1x4a_A           99 GR  100 (109)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=7.7e-20  Score=120.60  Aligned_cols=78  Identities=21%  Similarity=0.398  Sum_probs=72.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v  171 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+      .+++|||+|.+.++|.+|+..| ||..+.| +.|+|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g-~~l~v   91 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG-RRLVL   91 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS-CBCEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC-CEEEE
Confidence            678899999999999999999999999 9999998754      2799999999999999999999 9999999 89999


Q ss_pred             EecCccc
Q psy17274        172 SFSKSNI  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      .|++...
T Consensus        92 ~~a~~~~   98 (107)
T 2cph_A           92 EWADSEV   98 (107)
T ss_dssp             EECCCCC
T ss_pred             EeCCCCC
Confidence            9998764

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=5.1e-20  Score=120.47  Aligned_cols=79  Identities=15%  Similarity=0.356  Sum_probs=73.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus        11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~   88 (102)
T 1x5s_A           11 DEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-RQIRVDQ   88 (102)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-CCCEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence            678999999999999999999999999 9999999763     36899999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        89 a~~~~~   94 (102)
T 1x5s_A           89 AGKSSD   94 (102)
T ss_dssp             EECCCC
T ss_pred             CCCCCC
Confidence            987643

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.83  E-value=5.7e-20  Score=119.29  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=71.0

Q ss_pred             CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         98 PPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        98 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      +++++|||+|||. .+++++|+++|++|| .|..+++   .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|++.
T Consensus        20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~   94 (97)
T 2xnq_A           20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFG-KKLILEVSSS   94 (97)
T ss_dssp             CTTCEEEEESCCSSCCCHHHHHHHHGGGS-CEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETT-EECEEEECCC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEecCC
Confidence            3788999999998 999999999999999 9999987   37999999999999999999999999999 8999999987


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      +.
T Consensus        95 ~~   96 (97)
T 2xnq_A           95 NA   96 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=4.7e-20  Score=118.01  Aligned_cols=76  Identities=21%  Similarity=0.380  Sum_probs=71.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +.++|||+|||.++++++|+++|++|| .|..+++.   +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~~~   81 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFEQYG-KVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHG-VNINVEASKNKS   81 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEECSSCCC
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCC-cEEEEEECCCCC
Confidence            678999999999999999999999999 99999887   6899999999999999999999999999 899999998775


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        82 ~   82 (90)
T 2dnq_A           82 K   82 (90)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=122.27  Aligned_cols=76  Identities=24%  Similarity=0.346  Sum_probs=67.6

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCe----ecCCCCeE
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNH----QLSEQSHL  169 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~----~i~g~~~l  169 (184)
                      -.+|||+|||+.+|+++|+++|++||. .+.+|++..+     ++|+|||+|.+.++|.+|++.|||.    .++| |+|
T Consensus         9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-r~i   87 (95)
T 2lkz_A            9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-KTI   87 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-EEE
T ss_pred             cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-EEE
Confidence            468999999999999999999999993 2568887652     4789999999999999999999997    5899 999


Q ss_pred             EEEecCc
Q psy17274        170 RVSFSKS  176 (184)
Q Consensus       170 ~v~~~~~  176 (184)
                      +|+|+++
T Consensus        88 ~V~~Aks   94 (95)
T 2lkz_A           88 GVDFAKS   94 (95)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9999986

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.83  E-value=4e-20  Score=116.43  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=69.8

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .+|||+|||+++++++|+++|++|| .|..+.+..+     .+++|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~   79 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-RPLRINWAA   79 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC-cEEEEEecC
Confidence            5799999999999999999999999 9999998753     26899999999999999999999999999 899999998


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ++
T Consensus        80 ~~   81 (83)
T 3md1_A           80 KL   81 (83)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.4e-19  Score=117.79  Aligned_cols=77  Identities=22%  Similarity=0.360  Sum_probs=71.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +++++|||+|||..+|+++|+++|++|  | .|..+++.   +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g-~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~   87 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG-AVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDG-SPIEVTLAK   87 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTT-CEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETT-EEEEEECCC
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCC-cEEEEEECC
Confidence            368899999999999999999999999  7 89888764   6899999999999999999999999999 899999998


Q ss_pred             cccc
Q psy17274        176 SNIQ  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      +...
T Consensus        88 ~~~~   91 (99)
T 2cpd_A           88 PVDK   91 (99)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=117.67  Aligned_cols=78  Identities=26%  Similarity=0.446  Sum_probs=72.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..+++..+.    +++|||+|.+.++|.+|+..|||..++| +.|+|.|+
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a   93 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE-NIIKVAIS   93 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence            577899999999999999999999999 99999987632    5899999999999999999999999999 89999999


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      +++.
T Consensus        94 ~~~~   97 (100)
T 2do4_A           94 NSGP   97 (100)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            8764

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=6.9e-20  Score=119.22  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~   84 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-RMLHVLP   84 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-CEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence            678999999999999999999999999 9999998752     36899999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        85 a~~~~~   90 (99)
T 1whw_A           85 STIKKE   90 (99)
T ss_dssp             CCCCST
T ss_pred             cCCCcc
Confidence            998744

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=2.3e-20  Score=124.13  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..|.+. ..+++|||+|.+.++|..|+..|||+.+.| +.|+|.|++..
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~   84 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFG-SLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHH-VPLYLEWAPIG   84 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEEEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECC-eEEEEEECCCC
Confidence            467899999999999999999999999 99999877 488999999999999999999999999999 89999999865

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.8e-20  Score=120.44  Aligned_cols=78  Identities=21%  Similarity=0.356  Sum_probs=72.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||+.+|+++|+++|++|| .|..|++..+   .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~   91 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-KPLYVALAQ   91 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEec
Confidence            678899999999999999999999999 9999998853   36899999999999999999999999999 899999998


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      .+.
T Consensus        92 ~~~   94 (103)
T 2d9p_A           92 RKE   94 (103)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            764

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.83  E-value=4.6e-20  Score=117.36  Aligned_cols=77  Identities=19%  Similarity=0.332  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..++|||+|||.++|+++|+++|++|| .|..+.+..+      .+++|||+|.+.++|.+|+..|||..++| +.|+|+
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~   80 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-QEITAT   80 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-eEEEEE
Confidence            457899999999999999999999999 9999988652      47899999999999999999999999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      ++.++
T Consensus        81 ~a~~~   85 (88)
T 4a8x_A           81 AVLAP   85 (88)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            99765

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=1.2e-19  Score=119.26  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~   91 (105)
T 1x5u_A           14 QDATVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-KPIRVNK   91 (105)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-CBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEE
Confidence            678999999999999999999999999 9999998763     36899999999999999999999999999 8999999


Q ss_pred             cCccccc
Q psy17274        174 SKSNIQD  180 (184)
Q Consensus       174 ~~~~~~~  180 (184)
                      ++.....
T Consensus        92 a~~~~~~   98 (105)
T 1x5u_A           92 ASAHNKN   98 (105)
T ss_dssp             TTTTSCC
T ss_pred             CCCCCcC
Confidence            9877543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=3e-20  Score=120.75  Aligned_cols=79  Identities=27%  Similarity=0.383  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+        .+++|||+|.+.++|.+|+..|||..+.| +.|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~   81 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-HKLE   81 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-EECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-eEEE
Confidence            678899999999999999999999999 9999998742        25899999999999999999999999999 8999


Q ss_pred             EEecCcccc
Q psy17274        171 VSFSKSNIQ  179 (184)
Q Consensus       171 v~~~~~~~~  179 (184)
                      |.|++....
T Consensus        82 V~~a~~~~~   90 (98)
T 2cpf_A           82 VRISERATK   90 (98)
T ss_dssp             EECSSCSSC
T ss_pred             EEEccCCCC
Confidence            999987643

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=116.46  Aligned_cols=76  Identities=18%  Similarity=0.373  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..+++.   +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~   82 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKG-KRINVELSTKGQ   82 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEECCCCC
Confidence            577899999999999999999999999 99999887   3599999999999999999999999999 899999998774


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        83 ~   83 (90)
T 2dnp_A           83 K   83 (90)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=3.9e-20  Score=119.69  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=72.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE-EEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF-KFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v-~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+ ++..+     .+++|||+|.+.++|.+|+..|||..+.| ++|+|.
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~   81 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-RPITVS   81 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEE
Confidence            678999999999999999999999999 89888 88753     36899999999999999999999999999 899999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |++++..
T Consensus        82 ~a~~~~~   88 (96)
T 1x5t_A           82 YAFKKDS   88 (96)
T ss_dssp             ESCCCCC
T ss_pred             EecccCC
Confidence            9987643

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=6.6e-20  Score=121.45  Aligned_cols=78  Identities=14%  Similarity=0.368  Sum_probs=73.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++.. .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++...
T Consensus        24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~  100 (109)
T 1x4g_A           24 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEG-HVVKCYWGKESP  100 (109)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEECCCCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEecCCCC
Confidence            578999999999999999999999999 999999885 59999999999999999999999999999 899999999874


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus       101 ~  101 (109)
T 1x4g_A          101 D  101 (109)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.4e-20  Score=121.17  Aligned_cols=76  Identities=24%  Similarity=0.430  Sum_probs=71.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+++|||+|||..+++++|+++|++|| .|..+++. .++++|||+|.+.++|.+|+..|||..++| +.|+|.|++++
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~  101 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFG-FILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQG-RNLRTGWGKER  101 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTS-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETT-EECCCCBCCCC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCC-CEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEeccCC
Confidence            468999999999999999999999999 99999988 589999999999999999999999999999 89999999863

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=6.7e-20  Score=120.16  Aligned_cols=79  Identities=18%  Similarity=0.337  Sum_probs=72.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~   91 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-LILNVEW   91 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEE
Confidence            678999999999999999999999999 9999998753     25799999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        92 a~~~~~   97 (103)
T 2cq0_A           92 AKPSTN   97 (103)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            987643

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1.6e-19  Score=116.03  Aligned_cols=76  Identities=26%  Similarity=0.494  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+.+.   +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus         9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~~   83 (92)
T 2dgt_A            9 ASTKLHVGNISPTCTNQELRAKFEEYG-PVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQG-KRMHVQLSTSRL   83 (92)
T ss_dssp             SSEEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETT-EEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEccCCC
Confidence            678999999999999999999999999 99999887   3599999999999999999999999999 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        84 ~   84 (92)
T 2dgt_A           84 R   84 (92)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.82  E-value=1.7e-19  Score=120.56  Aligned_cols=78  Identities=14%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+.     +++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~   91 (115)
T 2dgo_A           14 NHFHVFVGDLSPEITTEDIKAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNW   91 (115)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            678999999999999999999999999 99999997632     5899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus        92 a~~~~   96 (115)
T 2dgo_A           92 ATRKP   96 (115)
T ss_dssp             SSCCC
T ss_pred             ccCCC
Confidence            98764

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.82  E-value=6.2e-20  Score=121.75  Aligned_cols=79  Identities=16%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ...+|||+|||+++++++|+++|++||..|..+.+. .+.+|+|||+|.+.++|.+|++.|||..+.| +.|+|.+++.+
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-r~i~V~~a~~~  105 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG-SVITVERDDNP  105 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT-EEEEEEESCC-
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECCCC
Confidence            456899999999999999999999999458888885 3468999999999999999999999999999 89999999876


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus       106 p  106 (111)
T 2jvr_A          106 P  106 (111)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.82  E-value=1.6e-19  Score=117.58  Aligned_cols=75  Identities=19%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      +..+|||+|||.++++++|+++|++|| .|..        +++..+     .+|+|||+|.+.++|.+|++.|||..+.|
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g   90 (99)
T 2la6_A           12 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG   90 (99)
T ss_dssp             CCSEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence            678999999999999999999999999 8988        888753     25899999999999999999999999999


Q ss_pred             CCeEEEEecC
Q psy17274        166 QSHLRVSFSK  175 (184)
Q Consensus       166 ~~~l~v~~~~  175 (184)
                       +.|+|.|++
T Consensus        91 -~~l~V~~A~   99 (99)
T 2la6_A           91 -NPIKVSFAT   99 (99)
T ss_dssp             -SBCEEEECC
T ss_pred             -cEEEEEecC
Confidence             899999975

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.82  E-value=3.9e-20  Score=119.93  Aligned_cols=80  Identities=23%  Similarity=0.393  Sum_probs=73.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |+++|||+|||..+++++|+    ++|++|| .|..|.+..  ..+|+|||+|.+.++|..|+..|||..+.| +.|+|+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G-~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~   84 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRIQ   84 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS-CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC-cEEEEE
Confidence            78899999999999999999    9999999 999998864  247999999999999999999999999999 899999


Q ss_pred             ecCccccc
Q psy17274        173 FSKSNIQD  180 (184)
Q Consensus       173 ~~~~~~~~  180 (184)
                      |++++...
T Consensus        85 ~a~~~~~~   92 (97)
T 1nu4_A           85 YAKTDSDI   92 (97)
T ss_dssp             ECSSCCTH
T ss_pred             EccCCCcc
Confidence            99987543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.82  E-value=1.2e-19  Score=118.91  Aligned_cols=76  Identities=25%  Similarity=0.449  Sum_probs=71.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..|++.   +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~   84 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFG-KLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEG-ENIEIVFAKPPD   84 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHS-CEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCC-CEEEEEEcCCCc
Confidence            678899999999999999999999999 99999876   4699999999999999999999999999 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        85 ~   85 (103)
T 2dgu_A           85 Q   85 (103)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.82  E-value=8.2e-20  Score=120.85  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=72.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+++..+     .+|+|||+|.+.++|.+|++.|||..++| +.|+|+|
T Consensus        25 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~  102 (108)
T 2jrs_A           25 GPMRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG-RPMKVGH  102 (108)
T ss_dssp             SCEEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            678999999999999999999999999 9999998753     25899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus       103 a~~k~  107 (108)
T 2jrs_A          103 VTERT  107 (108)
T ss_dssp             SCSSC
T ss_pred             cccCC
Confidence            98753

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.82  E-value=6.4e-20  Score=118.44  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..|++..+.    +++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus        15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a   92 (95)
T 2ywk_A           15 ADRTVFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-RPINVSGP   92 (95)
T ss_dssp             GGGEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-EECEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-CEEEEEEc
Confidence            678999999999999999999999999 99999987632    6899999999999999999999999999 89999998


Q ss_pred             Cc
Q psy17274        175 KS  176 (184)
Q Consensus       175 ~~  176 (184)
                      ++
T Consensus        93 ~~   94 (95)
T 2ywk_A           93 SS   94 (95)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.82  E-value=1.9e-19  Score=120.26  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=72.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+.     +++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~  101 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-KRLKVQL  101 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            678899999999999999999999999 99999987632     4799999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++++.
T Consensus       102 a~~~~  106 (115)
T 2cpz_A          102 KRSKN  106 (115)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            98764

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=3e-19  Score=118.52  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhc------CeecCCCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMH------NHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~ln------g~~i~g~~  167 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..||      |..+.| +
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-~   91 (111)
T 1x4h_A           14 EGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-R   91 (111)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-C
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC-E
Confidence            678899999999999999999999999 9999998753     47899999999999999999999      999999 8


Q ss_pred             eEEEEecCccc
Q psy17274        168 HLRVSFSKSNI  178 (184)
Q Consensus       168 ~l~v~~~~~~~  178 (184)
                      .|+|.|++++.
T Consensus        92 ~l~v~~a~~~~  102 (111)
T 1x4h_A           92 QLKVDLAVTRD  102 (111)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEEECCCCc
Confidence            99999998763

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=117.81  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=72.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|++ |||..+.| +.|+|.|
T Consensus         9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~l~V~~   85 (99)
T 2dgs_A            9 KSNKIFVGGIPHNCGETELREYFKKFG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-KKVEVKR   85 (99)
T ss_dssp             SCCEEEEESCCSSCCHHHHHHHHSSSS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-CBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC-eEEEEEE
Confidence            678999999999999999999999999 9999999753     47899999999999999999 99999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++++..
T Consensus        86 a~~~~~   91 (99)
T 2dgs_A           86 AEPRDS   91 (99)
T ss_dssp             CCCCCC
T ss_pred             CCCCcc
Confidence            987643

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=8.3e-20  Score=121.02  Aligned_cols=78  Identities=17%  Similarity=0.352  Sum_probs=72.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+++..+   .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~  105 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNAT  105 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECC
Confidence            678999999999999999999999999 9999998753   37999999999999999999999999999 899999998


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      .++
T Consensus       106 ~~~  108 (109)
T 2err_A          106 ARV  108 (109)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            764

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.82  E-value=1.1e-19  Score=127.53  Aligned_cols=79  Identities=28%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-CCceEEEEeCCHHHHHHHHHHhcCeecCC-CCeEEEEecCccc
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-DRKMALLQLDSIEEAITALIQMHNHQLSE-QSHLRVSFSKSNI  178 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g-~~~l~v~~~~~~~  178 (184)
                      ..|||+||++.+|+++|+++|++|| .|.+|.++.+ .+++|||+|++.++|.+|++.|||..|.| +++|+|.|++.+.
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG-~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~  125 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS  125 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHS-CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence            3478999999999999999999999 9999998754 36799999999999999999999999953 1699999999874


Q ss_pred             cc
Q psy17274        179 QD  180 (184)
Q Consensus       179 ~~  180 (184)
                      ..
T Consensus       126 l~  127 (164)
T 1sjr_A          126 LN  127 (164)
T ss_dssp             CC
T ss_pred             cc
Confidence            33

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.82  E-value=8.9e-20  Score=133.82  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=73.1

Q ss_pred             CCCEEEEeCCC-CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp-~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++++|||+||| ..+|+++|+++|++|| .|.+|+++.+.+|+|||+|.+.++|..|++.|||..+.| ++|+|.|++.+
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G-~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~v~~s~~~   80 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG-NVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFG-QKMNVCVSKQP   80 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTS-CEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECSCS
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcC-CeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEEEccCC
Confidence            67899999999 8999999999999999 999999997778999999999999999999999999999 89999999753

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.81  E-value=8.1e-20  Score=117.26  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+++...   .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~   84 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECG-HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG-REIDVRIDR   84 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-BCCCCEECS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence            678999999999999999999999999 9999998753   36899999999999999999999999999 899999998


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      .+.
T Consensus        85 ~~~   87 (92)
T 2dgv_A           85 NAS   87 (92)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            764

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.81  E-value=6e-20  Score=119.94  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQ  179 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~  179 (184)
                      ++|||+|||+++|+++|+++|++|| .|..+.+..+.+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++....
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~~~   77 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYG-PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICG-SRVRVELSTGMPR   77 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSS-CCCEEEESSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECC-cEEEEEEccCCCC
Confidence            3799999999999999999999999 999999886568999999999999999999999999999 8999999987643

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.81  E-value=1.2e-20  Score=152.70  Aligned_cols=78  Identities=15%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+|+++|.++|++|| .|..|.|+..     .+|+|||+|.+.++|..||..|||..|.| +.|.|.|
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g-r~i~V~~  178 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RRVLVDV  178 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            678999999999999999999999999 9999998753     37999999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus       179 a~~~~  183 (437)
T 3pgw_S          179 ERGRT  183 (437)
T ss_pred             eCCCC
Confidence            98653

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.81  E-value=8.8e-20  Score=120.70  Aligned_cols=76  Identities=26%  Similarity=0.444  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..+++.   +|+|||+|.+.++|.+|+..|||..++| +.|+|.|++.+.
T Consensus        30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~~  104 (108)
T 2jvo_A           30 SNTRLFVRPFPLDVQESELNEIFGPFG-PMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFAN-QPLEVVYSKLPA  104 (108)
T ss_dssp             SCSEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEESCSCCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEecCCC
Confidence            678999999999999999999999999 99999887   7999999999999999999999999999 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus       105 ~  105 (108)
T 2jvo_A          105 K  105 (108)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=6.3e-20  Score=121.70  Aligned_cols=76  Identities=13%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             CCCEEEE--eCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec-----CCCCeEEE
Q psy17274         99 PSPTLHL--SNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL-----SEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v--~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i-----~g~~~l~v  171 (184)
                      |+++|||  +||+.++|+++|+++|++|| .|..|.+. .++++|||+|++.++|.+|++.|||+.+     .| ++|.|
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g-~~l~v  100 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK-ITLYL  100 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE-EECEE
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC-cEEEE
Confidence            7889999  66999999999999999999 99999876 4799999999999999999999999998     67 79999


Q ss_pred             EecCcc
Q psy17274        172 SFSKSN  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      .|++.-
T Consensus       101 ~~a~~~  106 (114)
T 2cq2_A          101 NFVEKV  106 (114)
T ss_dssp             EEESCC
T ss_pred             EecccC
Confidence            999754

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.81  E-value=1.5e-19  Score=119.89  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=72.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..+.+..+     .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~  102 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDW  102 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence            678999999999999999999999999 9999998753     26999999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++++.
T Consensus       103 a~~~~  107 (110)
T 1oo0_B          103 CFVKG  107 (110)
T ss_dssp             SEESS
T ss_pred             cccCC
Confidence            98653

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.81  E-value=1.9e-19  Score=120.31  Aligned_cols=77  Identities=21%  Similarity=0.327  Sum_probs=71.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..+.+..+  .+|+|||+|.+.++|..|+..|||..+.| +.|+|.|+++
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~   84 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN-RYLVVLYYNA   84 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS-CBCEEEECCH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEecC
Confidence            678999999999999999999999999 9999998643  47899999999999999999999999999 8999999986


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      +
T Consensus        85 ~   85 (115)
T 3lqv_A           85 N   85 (115)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=118.58  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|.+..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~   89 (103)
T 2dnm_A           12 GMITLKVDNLTYRTSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-RELRVQV   89 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-BCCEEEE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence            678999999999999999999999999 9999998753     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus        90 a~~~~   94 (103)
T 2dnm_A           90 ARYGR   94 (103)
T ss_dssp             CSSCC
T ss_pred             CCcCC
Confidence            98764

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.81  E-value=1.1e-19  Score=120.71  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHH---HHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         99 PSPTLHLSNIPASVTEDELK---EAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      +.++|||+|||+.+++++|+   ++|++|| .|..|.+..+        .+|+|||+|++.++|.+|++.|||..+.| +
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-r   91 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-R   91 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-E
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-E
Confidence            56789999999999999999   9999999 9999998753        23799999999999999999999999999 8


Q ss_pred             eEEEEecCccc
Q psy17274        168 HLRVSFSKSNI  178 (184)
Q Consensus       168 ~l~v~~~~~~~  178 (184)
                      +|+|.|++++.
T Consensus        92 ~l~V~~a~~k~  102 (111)
T 2cpi_A           92 TLKASLGTTKY  102 (111)
T ss_dssp             EEEEESCCCCS
T ss_pred             EEEEEeccccc
Confidence            99999998875

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.1e-19  Score=119.65  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|.+..+     .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~   99 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW   99 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEe
Confidence            578899999999999999999999999 9999998753     26899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++++
T Consensus       100 a~~~  103 (106)
T 1p27_B          100 CFVR  103 (106)
T ss_dssp             SEES
T ss_pred             ecCC
Confidence            9865

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.81  E-value=9.3e-20  Score=118.03  Aligned_cols=75  Identities=20%  Similarity=0.315  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++++|||+|||+ .+++++|+++|++|| .|..+.+.   +++|||+|.+.++|..|+..|||..+.| +.|+|.|++..
T Consensus         9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~~   83 (96)
T 2kvi_A            9 PKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFG-KKLILEVSSSN   83 (96)
T ss_dssp             CCEEEEEESSTTSCCCHHHHHHHHTTTC-CCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBT-TTBCEEEEECC
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEEcCcC
Confidence            788999999998 999999999999999 99999874   6899999999999999999999999999 89999999765


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus        84 ~   84 (96)
T 2kvi_A           84 A   84 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.81  E-value=2.8e-19  Score=117.75  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=72.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeec---CCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQL---SEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i---~g~~~l~  170 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..|||..+   .| +.|+
T Consensus        12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~~l~   89 (106)
T 2dgp_A           12 DAIKLFIGQIPRNLDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-RPIQ   89 (106)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS-SCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC-ceEE
Confidence            678899999999999999999999999 9999998763     368999999999999999999999998   88 8999


Q ss_pred             EEecCcccc
Q psy17274        171 VSFSKSNIQ  179 (184)
Q Consensus       171 v~~~~~~~~  179 (184)
                      |.|++....
T Consensus        90 v~~a~~~~~   98 (106)
T 2dgp_A           90 VKPADSESR   98 (106)
T ss_dssp             EEECCCCSC
T ss_pred             EEECCcccc
Confidence            999987644

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=114.18  Aligned_cols=74  Identities=24%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CCCE-EEEeCCCCCCCHHH----HHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPT-LHLSNIPASVTEDE----LKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~-l~v~nlp~~~t~~~----l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |+.+ |||+|||..+++++    |+++|++||++|..|     ..|+|||+|.+.++|.+|++.|||..+.| |+|+|+|
T Consensus         7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G~~l~g-r~i~v~~   80 (96)
T 2diu_A            7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMENEDVFG-NRIIVSF   80 (96)
T ss_dssp             CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTTCCSSS-SCCEEES
T ss_pred             CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcCCccCC-ceEEEEe
Confidence            6777 89999999999988    558999994388877     23999999999999999999999999999 9999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus        81 A~~~s   85 (96)
T 2diu_A           81 TPKNR   85 (96)
T ss_dssp             SCCSC
T ss_pred             cCCCc
Confidence            99773

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=120.67  Aligned_cols=79  Identities=18%  Similarity=0.290  Sum_probs=72.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +.++|||+|||.++|+++|+++|++|| .|..|.+..+    .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|+
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a   83 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG-KAIKVEQA   83 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-SBCEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence            567899999999999999999999999 8999998763    36999999999999999999999999999 89999999


Q ss_pred             Ccccc
Q psy17274        175 KSNIQ  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      +.+..
T Consensus        84 ~~~~~   88 (116)
T 2fy1_A           84 KKPSF   88 (116)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            87743

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.81  E-value=1.8e-19  Score=118.85  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=70.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..|++...    .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus        28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a  105 (107)
T 3ulh_A           28 TGGKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-RPMNIQLV  105 (107)
T ss_dssp             CSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEe
Confidence            678999999999999999999999999 9999998753    26899999999999999999999999999 89999998


Q ss_pred             Cc
Q psy17274        175 KS  176 (184)
Q Consensus       175 ~~  176 (184)
                      ++
T Consensus       106 ~s  107 (107)
T 3ulh_A          106 TS  107 (107)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.81  E-value=4e-19  Score=119.23  Aligned_cols=76  Identities=24%  Similarity=0.418  Sum_probs=70.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ++.++|||+|||.++++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|++.|||..++| +.|+|.
T Consensus        38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~  115 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT-KRLKVQ  115 (118)
T ss_dssp             CCSEEEEEECSCTTCCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT-EECCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEE
Confidence            3678999999999999999999999999 9999999753     37899999999999999999999999999 899999


Q ss_pred             ecC
Q psy17274        173 FSK  175 (184)
Q Consensus       173 ~~~  175 (184)
                      |++
T Consensus       116 ~ak  118 (118)
T 2khc_A          116 LKK  118 (118)
T ss_dssp             EC-
T ss_pred             ecC
Confidence            985

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=5.4e-19  Score=114.62  Aligned_cols=77  Identities=22%  Similarity=0.359  Sum_probs=69.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+++|||+|||..+++++|+++|++|| .|. ++++ ...+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~   94 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELG-SVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-DTLRVALARQQ   94 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTT-CCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS-SCCEEEECCCC
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcC-CEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcCCC
Confidence            578999999999999999999999999 775 4443 3568999999999999999999999999999 89999999876


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus        95 ~   95 (97)
T 2e5j_A           95 R   95 (97)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.81  E-value=2.2e-19  Score=114.47  Aligned_cols=76  Identities=17%  Similarity=0.307  Sum_probs=70.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||+++++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.++
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-~~l~V~~a   82 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-RQIKVIPK   82 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-EECEEEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-cEEEEEEc
Confidence            57899999999999999999999999 9999998753     2789999999999999999 999999999 89999999


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      +++.
T Consensus        83 ~~~~   86 (89)
T 3ucg_A           83 RTNR   86 (89)
T ss_dssp             TTTS
T ss_pred             cCCC
Confidence            8764

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=118.14  Aligned_cols=77  Identities=12%  Similarity=0.300  Sum_probs=71.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee-EEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCe----
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK-GFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSH----  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~-~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~----  168 (184)
                      ++++|||+|||+.+++++|+++|++|| .|. .+++..+     .+++|||+|.+.++|.+|+..|||..+.| +.    
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~~   85 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG-ATPAKR   85 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS-CSSCEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC-CCccee
Confidence            678999999999999999999999999 898 9998753     24899999999999999999999999999 78    


Q ss_pred             EEEEecCcc
Q psy17274        169 LRVSFSKSN  177 (184)
Q Consensus       169 l~v~~~~~~  177 (184)
                      |+|.|++..
T Consensus        86 l~v~~a~~~   94 (99)
T 2div_A           86 FKLNYATYS   94 (99)
T ss_dssp             CCEEETTCC
T ss_pred             EEEeecCCC
Confidence            999999875

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=4.2e-19  Score=118.37  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+    .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus        14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a   91 (114)
T 2do0_A           14 LGSTVFVANLDYKVGWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-RPMHVKMD   91 (114)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-CEEEEEEc
Confidence            678999999999999999999999999 9999998763    26899999999999999999999999999 89999999


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +..
T Consensus        92 ~~~   94 (114)
T 2do0_A           92 ERA   94 (114)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            754

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.80  E-value=3.1e-19  Score=118.36  Aligned_cols=75  Identities=16%  Similarity=0.313  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++++|||+|||+. +++++|+++|++|| .|..|.+   .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~~  100 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAG-QTLDINMAGEP  100 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETT-EECCEEESCCC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECCCC
Confidence            5689999999999 99999999999999 9999988   57999999999999999999999999999 89999999865


Q ss_pred             c
Q psy17274        178 I  178 (184)
Q Consensus       178 ~  178 (184)
                      .
T Consensus       101 ~  101 (110)
T 1wf1_A          101 K  101 (110)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.80  E-value=2.5e-18  Score=116.33  Aligned_cols=79  Identities=22%  Similarity=0.288  Sum_probs=73.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+    .+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a  111 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQLV  111 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEEe
Confidence            678999999999999999999999999 9999998753    47899999999999999999999999999 89999999


Q ss_pred             Ccccc
Q psy17274        175 KSNIQ  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      .....
T Consensus       112 ~~~~~  116 (124)
T 2kt5_A          112 ASQID  116 (124)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            87643

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.80  E-value=9.4e-19  Score=114.98  Aligned_cols=80  Identities=19%  Similarity=0.288  Sum_probs=72.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCC--CeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQ--SHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~--~~l~v~  172 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+.    +++|||+|.+.++|.+|+..|||..+.|.  +.|+|.
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~   92 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK   92 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence            678999999999999999999999999 99999998632    68999999999999999999999999873  499999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |++....
T Consensus        93 ~a~~~~~   99 (105)
T 2dnh_A           93 FADTDKE   99 (105)
T ss_dssp             ESCSSCC
T ss_pred             ECccCcc
Confidence            9987654

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=1.5e-19  Score=117.44  Aligned_cols=78  Identities=17%  Similarity=0.316  Sum_probs=69.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+.++..     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~   91 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLVL   91 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence            567899999999999999999999999 8866555432     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus        92 a~~~~   96 (98)
T 2cqp_A           92 GSGPS   96 (98)
T ss_dssp             SSCSS
T ss_pred             cCCCC
Confidence            98764

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.80  E-value=3e-19  Score=121.19  Aligned_cols=78  Identities=17%  Similarity=0.308  Sum_probs=72.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..|.+..+.     +++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus        21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~   98 (126)
T 3ex7_B           21 EGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW   98 (126)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence            578999999999999999999999999 99999987532     7899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus        99 a~~~~  103 (126)
T 3ex7_B           99 CFVRG  103 (126)
T ss_dssp             SEESS
T ss_pred             ecCCC
Confidence            97653

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=5.1e-19  Score=117.80  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee--------EEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK--------GFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~--------~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      ++++|||+|||..+|+++|+++|++|| .|.        .|++..+     .+++|||+|.+.++|.+|+..|||..+.|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   92 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCG-VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   92 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTS-CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence            678999999999999999999999999 888        5888753     26899999999999999999999999999


Q ss_pred             CCeEEEEecCcccc
Q psy17274        166 QSHLRVSFSKSNIQ  179 (184)
Q Consensus       166 ~~~l~v~~~~~~~~  179 (184)
                       +.|+|.|++....
T Consensus        93 -~~l~V~~a~~~~~  105 (113)
T 2cpe_A           93 -SKLKVSLARKKPP  105 (113)
T ss_dssp             -EECEEECSSCCCC
T ss_pred             -CEEEEEECCCCCC
Confidence             8999999987643

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=1.1e-19  Score=119.16  Aligned_cols=78  Identities=26%  Similarity=0.435  Sum_probs=71.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+++....     +|+|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~   84 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-RALRVDN   84 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-SCBEEEE
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEe
Confidence            467899999999999999999999999 99999987532     6899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++++.
T Consensus        85 a~~~~   89 (104)
T 1p1t_A           85 AASEK   89 (104)
T ss_dssp             TTCTT
T ss_pred             CCCcc
Confidence            98763

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.80  E-value=3.3e-19  Score=121.53  Aligned_cols=77  Identities=22%  Similarity=0.397  Sum_probs=71.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..|||..+.| ++|+|.|
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-~~l~V~~  122 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRVDF  122 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEESC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            678999999999999999999999999 9999998752     47899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++.+
T Consensus       123 a~~~  126 (129)
T 2kxn_B          123 SITK  126 (129)
T ss_dssp             CSSS
T ss_pred             ecCC
Confidence            9865

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=2e-19  Score=118.02  Aligned_cols=78  Identities=18%  Similarity=0.269  Sum_probs=72.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCee-cCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQ-LSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~-i~g~~~l~v~  172 (184)
                      ++.+|||+|||+.+|+++|+++|++ || .|..|++..+    .+++|||+|.+.++|.+|+..|||.. +.| +.|+|.
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-~~l~v~   85 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-KPVRLS   85 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS-SCCCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC-EeEEEE
Confidence            6788999999999999999999999 99 9999999763    36899999999999999999999999 999 899999


Q ss_pred             ecCccc
Q psy17274        173 FSKSNI  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      |++...
T Consensus        86 ~a~~~~   91 (104)
T 2dhg_A           86 VAIPKA   91 (104)
T ss_dssp             BCCCCC
T ss_pred             EccCCC
Confidence            997663

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=1.8e-19  Score=115.91  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCc-eeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC-eecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFPKDRKMALLQLDSIEEAITALIQMHN-HQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~-v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng-~~i~g~~~l~v~~~~~  176 (184)
                      +.++|||+|||.++|+++|+++|++|| . |..+.+.  .+++|||+|.+.++|.+|+..||| ..+.| +.|+|.|+++
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~a~~   82 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRK-LPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHG-KIMEVDYSVS   82 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTT-CCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETT-EECEEEECCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC-CceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECC-EEEEEEEccC
Confidence            567899999999999999999999999 7 6666553  689999999999999999999999 99999 8999999987


Q ss_pred             ccc
Q psy17274        177 NIQ  179 (184)
Q Consensus       177 ~~~  179 (184)
                      +..
T Consensus        83 ~~~   85 (93)
T 2cqh_A           83 KKL   85 (93)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            643

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.80  E-value=8e-20  Score=117.98  Aligned_cols=76  Identities=20%  Similarity=0.333  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..+.++.     ..+++|||+|.+.++|.+|++.|||..+.| +.|+|.+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~l~v~~   91 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLSG   91 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSC-BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEe
Confidence            567899999999999999999999999 887666654     236899999999999999999999999999 8999999


Q ss_pred             cCc
Q psy17274        174 SKS  176 (184)
Q Consensus       174 ~~~  176 (184)
                      +++
T Consensus        92 a~s   94 (95)
T 2ek1_A           92 PSS   94 (95)
T ss_dssp             CC-
T ss_pred             ccC
Confidence            875

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=6.4e-19  Score=116.49  Aligned_cols=77  Identities=17%  Similarity=0.254  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCC-----CCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSE-----QSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g-----~~~l~v~~  173 (184)
                      +..+|||+|||+++|+++|+++|++|| .|..|++..+  ++|||+|.+.++|.+||+.|||..+.|     . .|+|.+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~-~i~V~~   89 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA-YIRVKV   89 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE-EEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce-EEEEEe
Confidence            467899999999999999999999999 9999999854  999999999999999999999999998     4 899999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++++..
T Consensus        90 a~~~~~   95 (108)
T 1x4c_A           90 DGPRSP   95 (108)
T ss_dssp             SSCCSC
T ss_pred             CCCCCC
Confidence            987643

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=1.5e-18  Score=112.55  Aligned_cols=76  Identities=20%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+||  .+|+++|+++|++|| .|..|.+. ..+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus        14 ~~~~l~V~n~--~~t~~~l~~~F~~~G-~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~~a~~~~   88 (97)
T 1x5p_A           14 KGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARKQP   88 (97)
T ss_dssp             CCSEEEEECS--SCCHHHHHHHHTTTS-CEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETT-EEEEEECCSSCC
T ss_pred             CCCEEEEcCC--CCCHHHHHHHHhhCC-CEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEECCCCC
Confidence            6789999996  899999999999999 99999885 589999999999999999999999999999 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        89 ~   89 (97)
T 1x5p_A           89 M   89 (97)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=4.2e-20  Score=116.95  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+.+++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|++++
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~~~   81 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA-QMAKQSG   81 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-ESCCSSC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee-EEEeecC
Confidence            678999999999999999999999999 9999998753     26899999999999999999999999999 8999988


Q ss_pred             cCc
Q psy17274        174 SKS  176 (184)
Q Consensus       174 ~~~  176 (184)
                      +++
T Consensus        82 ~~s   84 (85)
T 1x4e_A           82 PSS   84 (85)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.79  E-value=1.6e-18  Score=119.55  Aligned_cols=79  Identities=22%  Similarity=0.354  Sum_probs=72.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||.++++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~  118 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN-KRLKVAL  118 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS-CEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence            578999999999999999999999999 9999998753     26899999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++....
T Consensus       119 a~~~~~  124 (139)
T 1u6f_A          119 AASGHQ  124 (139)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            987643

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=2.7e-19  Score=117.29  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +.++|||+|||+++|+++|+++|++|| .|.+|++..+    ++|+|||+|.+.++|..|+. +||..++| +.|+|.++
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-r~l~V~~~   86 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-TDLLILFK   86 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-TTCEEEEH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC-EEEEEEEc
Confidence            567899999999999999999999999 9999998752    47999999999999999999 99999999 89999987


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +..
T Consensus        87 ~~~   89 (103)
T 1s79_A           87 DDY   89 (103)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            753

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.79  E-value=6.8e-19  Score=112.39  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec--CCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL--SEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i--~g~~~l~v~~~~~  176 (184)
                      +..+|||+|||+++|+++|+++|++|| .|.+|++..+++|+|||+|++.++|.+    |+|..+  .| +.|+|.++++
T Consensus        10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G-~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g-~~v~v~~a~~   83 (89)
T 3d2w_A           10 HGSKVFVGRCTEDMTAEELQQFFCQYG-EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKG-ISVHISNAEP   83 (89)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETT-EEEEEEECC-
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccC-CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCC-EEEEEEEcCC
Confidence            678999999999999999999999999 999999987789999999999999983    666655  48 8999999987


Q ss_pred             ccccc
Q psy17274        177 NIQDI  181 (184)
Q Consensus       177 ~~~~~  181 (184)
                      +...+
T Consensus        84 k~~~~   88 (89)
T 3d2w_A           84 KHNKL   88 (89)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            75544

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.79  E-value=1.5e-19  Score=117.88  Aligned_cols=78  Identities=17%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             CCCEEEEeCCCC------CCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         99 PSPTLHLSNIPA------SVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      .+++|||+|||.      .+++++|+++|++|| .|.+|++..+     ++|+|||+|.+.++|.+|+..|||..+.|.+
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r   83 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH   83 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence            467899999999      999999999999999 9999998742     3699999999999999999999999999735


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      .|+|.++++.
T Consensus        84 ~l~V~~a~~~   93 (100)
T 3ns6_A           84 RLFLYTMKDV   93 (100)
T ss_dssp             BCEEEESHHH
T ss_pred             EEEEEECchh
Confidence            9999998764

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=119.93  Aligned_cols=75  Identities=20%  Similarity=0.347  Sum_probs=69.1

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ++.++|||+|||+.+++++|+++|++|| .|..+++..+     .+++|||+|.+.++|.+|++.|||..++| +.|+|.
T Consensus        61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~  138 (140)
T 2ku7_A           61 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVN  138 (140)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-EEEEEE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence            3678999999999999999999999999 9999998753     37999999999999999999999999999 899999


Q ss_pred             ec
Q psy17274        173 FS  174 (184)
Q Consensus       173 ~~  174 (184)
                      |+
T Consensus       139 ~A  140 (140)
T 2ku7_A          139 LA  140 (140)
T ss_dssp             C-
T ss_pred             eC
Confidence            85

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=1.6e-18  Score=115.93  Aligned_cols=76  Identities=12%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+..||+ .+.| +.|+|.|
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-~~l~V~~   92 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-RKANVNL   92 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC-EEEEEEE
Confidence            678999999999999999999999999 9999999763     368999999999999999999999 8999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus        93 a~~~   96 (116)
T 2cqd_A           93 AYLG   96 (116)
T ss_dssp             STTT
T ss_pred             cccC
Confidence            9764

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.79  E-value=1.3e-19  Score=116.04  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +|||+|||.++|+++|+++|++||. .|.++++..+     ++|+|||+|.+.++|.+|++.|||..+.| +.|+|.+++
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-r~i~V~~~~   81 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVTPSN   81 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-CCCEECCC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC-EEEEEEECC
Confidence            6999999999999999999999994 4788888653     26899999999999999999999999999 899999998


Q ss_pred             ccccc
Q psy17274        176 SNIQD  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      ++...
T Consensus        82 ~~~~~   86 (90)
T 3p5t_L           82 KLEHH   86 (90)
T ss_dssp             -----
T ss_pred             CCccc
Confidence            87543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=113.58  Aligned_cols=76  Identities=26%  Similarity=0.361  Sum_probs=68.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||..+|+++|+++|++|| .|   ++...    .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a   88 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKAT-FI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG-RAIRLELQ   88 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCS-EE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT-EEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-EE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-eEEEEEEc
Confidence            678999999999999999999999999 76   33332    47999999999999999999999999999 89999999


Q ss_pred             Ccccc
Q psy17274        175 KSNIQ  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      +.+..
T Consensus        89 ~~~~~   93 (101)
T 2fc9_A           89 GPRGS   93 (101)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            87743

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=8e-19  Score=116.08  Aligned_cols=78  Identities=21%  Similarity=0.300  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCc-eeEEEEcc------CCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFP------KDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHL  169 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~-v~~v~v~~------~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l  169 (184)
                      +.++|||+|||..+|+++|+++|++|| . |..+.+..      ..+++|||+|.+.++|..|+..||  +..+.| +.|
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g-~~l   84 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVT-EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-HQI   84 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHS-TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT-BCC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc-CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC-CeE
Confidence            578899999999999999999999999 7 99998872      357999999999999999999996  599999 899


Q ss_pred             EEEecCccc
Q psy17274        170 RVSFSKSNI  178 (184)
Q Consensus       170 ~v~~~~~~~  178 (184)
                      +|.|+++..
T Consensus        85 ~V~~a~~~~   93 (109)
T 2dis_A           85 AVDWAEPEI   93 (109)
T ss_dssp             EEEESCSSC
T ss_pred             EEEEcCCCC
Confidence            999998763

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=4.5e-19  Score=118.27  Aligned_cols=76  Identities=16%  Similarity=0.320  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|||+|||..+++++|+++|++|| .|..|++..     ..+|+|||+|.+.++|.+|+ .|||..+.| +.|+|.|
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~  100 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-VPIIVQA  100 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-EEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-eEEEEEe
Confidence            357899999999999999999999999 999999974     24689999999999999999 999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus       101 a~~~  104 (114)
T 2cq4_A          101 SQAE  104 (114)
T ss_dssp             HHHH
T ss_pred             cCCC
Confidence            8765

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=112.95  Aligned_cols=71  Identities=17%  Similarity=0.298  Sum_probs=64.3

Q ss_pred             CCEEEEeCCCCCC------CHHHHHHHHHhcCCceeEEEEcc---CCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-eE
Q psy17274        100 SPTLHLSNIPASV------TEDELKEAFTEKGFTVKGFKFFP---KDRKMALLQLDSIEEAITALIQMHNHQLSEQS-HL  169 (184)
Q Consensus       100 ~~~l~v~nlp~~~------t~~~l~~~F~~~G~~v~~v~v~~---~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~l  169 (184)
                      +++|||+|||..+      ++++|+++|++|| .|..+.+.+   .++|+|||+|.+.++|.+|+..|||..+.| + +|
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~~l   78 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-QHTF   78 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS-SSCC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC-ceeE
Confidence            3689999999999      7799999999999 999998874   247999999999999999999999999999 8 88


Q ss_pred             EEE
Q psy17274        170 RVS  172 (184)
Q Consensus       170 ~v~  172 (184)
                      +|+
T Consensus        79 ~V~   81 (81)
T 2krb_A           79 RVN   81 (81)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            774

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=111.67  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEE-EccC-CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK-FFPK-DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~-v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ++++|||+|||+.+++++|+++|++|| .|..++ +..+ ..+.|||+|.+.++|.+|+..|||..+.| ++|+|.|+++
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~   91 (96)
T 2e44_A           14 RIRKLQIRNIPPHLQWEVLDSLLVQYG-VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN-FTLKVAYIPD   91 (96)
T ss_dssp             SCCCEEEEEECSSSCHHHHHHHHHHHS-CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEEECCC
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcCc
Confidence            467899999999999999999999999 999995 5542 34569999999999999999999999999 8999999987


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus        92 ~   92 (96)
T 2e44_A           92 E   92 (96)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.78  E-value=5.1e-19  Score=114.42  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +.++|||+|||..+++++|+++|++|| .|..+......+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g-~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~   92 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDAL-EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTGEKG   92 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEE-EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-EEEEEEECSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCC-cEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEcCCCC
Confidence            678999999999999999999999999 887772222347899999999999999999999999999 899999998764

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=2.3e-18  Score=114.97  Aligned_cols=79  Identities=27%  Similarity=0.337  Sum_probs=70.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCce----eEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v----~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|    ..+++.. ..+++|||+|.+.++|..|+..|||..+.| +.|+|.|
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~~  101 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQ-EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG-KILVIEF  101 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHH-HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS-CBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEE
Confidence            678999999999999999999999999 87    4555542 347999999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus       102 a~~~~~  107 (115)
T 2cpx_A          102 GKNKKQ  107 (115)
T ss_dssp             CCCCSC
T ss_pred             ccCCCC
Confidence            987643

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=1.5e-18  Score=113.93  Aligned_cols=77  Identities=21%  Similarity=0.418  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      +.++|||+|||..+++++|+++|++||  |..|++..+      .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~   89 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-KRIRVD   89 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC-cEEEEE
Confidence            678999999999999999999999999  888988753      2689999999999999999 999999999 899999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |++.+..
T Consensus        90 ~a~~~~~   96 (104)
T 1wi8_A           90 VADQAQD   96 (104)
T ss_dssp             ECCCCCC
T ss_pred             EccCCCC
Confidence            9987643

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.78  E-value=6.1e-19  Score=116.03  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             CCCEEEEeCCCCCC------CHHHHHHHHHhcCCceeEEEEcc---CCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-e
Q psy17274         99 PSPTLHLSNIPASV------TEDELKEAFTEKGFTVKGFKFFP---KDRKMALLQLDSIEEAITALIQMHNHQLSEQS-H  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~------t~~~l~~~F~~~G~~v~~v~v~~---~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~  168 (184)
                      .+++|||+|||..+      |+++|+++|++|| .|..|.+.+   .++|+|||+|.+.++|.+|+..|||..+.| + +
T Consensus        14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g-~~~   91 (105)
T 2nlw_A           14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-QHT   91 (105)
T ss_dssp             CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS-CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST-TCE
T ss_pred             CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC-CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC-Cce
Confidence            46789999999999      7899999999999 999998874   247999999999999999999999999999 8 9


Q ss_pred             EEEEecCc
Q psy17274        169 LRVSFSKS  176 (184)
Q Consensus       169 l~v~~~~~  176 (184)
                      |+|.++..
T Consensus        92 l~V~~a~~   99 (105)
T 2nlw_A           92 FRVNLFTD   99 (105)
T ss_dssp             EEEECSCC
T ss_pred             EEEEEcch
Confidence            99999874

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.78  E-value=1.2e-18  Score=122.44  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|..|+|..+     .+++|||+|.+.++|.+|+..|||..|.| +.|+|.|
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~  115 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD-RIIRTDW  115 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence            678999999999999999999999999 9999999753     25899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus       116 a~~~~  120 (156)
T 1h2v_Z          116 DAGFK  120 (156)
T ss_dssp             ESCCC
T ss_pred             CCCCC
Confidence            98753

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=4.1e-18  Score=113.55  Aligned_cols=77  Identities=21%  Similarity=0.349  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeec--------CCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQL--------SEQ  166 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i--------~g~  166 (184)
                      +.++|||+|||+.+|+++|+++|++|| .|..+++..+    .+++|||+|.+.++|.+|+..|||..+        .+ 
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~-  101 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT-  101 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS-
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC-
Confidence            568899999999999999999999999 9999998763    268999999999999999999999999        56 


Q ss_pred             CeEEEEecCcc
Q psy17274        167 SHLRVSFSKSN  177 (184)
Q Consensus       167 ~~l~v~~~~~~  177 (184)
                      ++|+|.|++++
T Consensus       102 ~~l~v~~a~p~  112 (114)
T 1x5o_A          102 EPLLCKFSGPS  112 (114)
T ss_dssp             SCBEEEECCCS
T ss_pred             CceeEEccCCC
Confidence            78999999854

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=2.5e-18  Score=112.64  Aligned_cols=77  Identities=17%  Similarity=0.371  Sum_probs=70.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++||  |..|++..+     .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~   89 (103)
T 2dng_A           14 PPYTAYVGNLPFNTVQGDIDAIFKDLS--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-RSLRVDI   89 (103)
T ss_dssp             SCEEEEEESCCTTCCHHHHHHHTTTSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT-EECEEEE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC--ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC-eEEEEEE
Confidence            678999999999999999999999997  888988753     2589999999999999999 899999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++....
T Consensus        90 a~~~~~   95 (103)
T 2dng_A           90 AEGRKQ   95 (103)
T ss_dssp             CCCCCC
T ss_pred             ecCCCC
Confidence            987644

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.77  E-value=1e-18  Score=118.18  Aligned_cols=81  Identities=14%  Similarity=0.268  Sum_probs=72.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++..+     .+|+|||+|.+.++|.+|+ .|||..++| +.|+|.|
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~  111 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-RTIKVLP  111 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEE
Confidence            467899999999999999999999999 9999998752     3689999999999999999 899999999 8999999


Q ss_pred             cCccccccc
Q psy17274        174 SKSNIQDIR  182 (184)
Q Consensus       174 ~~~~~~~~~  182 (184)
                      ++.......
T Consensus       112 a~~~~~~~~  120 (124)
T 2jwn_A          112 KRTNMPGIS  120 (124)
T ss_dssp             SSCCCSSCC
T ss_pred             CCCCCCCCC
Confidence            998765443

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.77  E-value=6.9e-19  Score=108.66  Aligned_cols=70  Identities=13%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +|||+|||+++++++|+++|++|| .|..+.+..+     ++|+|||+|.+.++|.+|++ |||..++| ++|+|.++
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-~~l~v~~A   75 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN-KMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTS-CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-CCCEEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC-EEEEEEeC
Confidence            489999999999999999999999 8999988753     26899999999999999998 99999999 89999875

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.77  E-value=1.7e-18  Score=115.56  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCce-eEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV-KGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v-~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+|+++|+++|++|| .| ..|+|..+    .+|+|||+|.+.++|.+|+.. ||..|.| +.|+|.+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g-r~i~v~~   90 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG-REAFVHV   90 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSC-CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-EEEEEEE
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCC-CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC-eEEEEEE
Confidence            578999999999999999999999999 88 78888742    479999999999999999997 9999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      +....
T Consensus        91 a~~~~   95 (114)
T 2cpy_A           91 VTLED   95 (114)
T ss_dssp             ECHHH
T ss_pred             CCHHH
Confidence            98653

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.77  E-value=2.9e-18  Score=108.86  Aligned_cols=73  Identities=14%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..+++..+     .+|+|||+|.+.++|.+|++ ++|..+.| +.|+|.+
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~i~v~~   86 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG-RVIDPKK   86 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT-EEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC-EEEEEEe
Confidence            678999999999999999999999999 9999998753     26899999999999999996 58899999 8999987


Q ss_pred             c
Q psy17274        174 S  174 (184)
Q Consensus       174 ~  174 (184)
                      +
T Consensus        87 A   87 (87)
T 3s7r_A           87 A   87 (87)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.77  E-value=1.4e-18  Score=110.71  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=69.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||+.+++++|+++|++|  .|..+++. ..+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|++...
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~~~   79 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-KDLIVQLQPTDA   79 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEEcCCCc
Confidence            46789999999999999999999999  47788875 578999999999999999999999999999 899999998763

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.77  E-value=4.4e-19  Score=118.61  Aligned_cols=89  Identities=13%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |.++|++||.|.+|+++..   ++|||||+|.+.++|++|++.|||..+.|++|.|.+++........            
T Consensus        22 L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~------------   89 (115)
T 4f25_A           22 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE------------   89 (115)
T ss_dssp             HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------
T ss_pred             HHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccc------------
Confidence            5789999999999999872   5799999999999999999999999999999999998733211000            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Q psy17274         78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDE  116 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~  116 (184)
                                ..     ........|||.|||+++|++-
T Consensus        90 ----------~~-----~~~~~~~~lyv~Nl~~~~T~~a  113 (115)
T 4f25_A           90 ----------LG-----ARAKEFTNVYIKNFGPGSTRAA  113 (115)
T ss_dssp             ---------------------------------------
T ss_pred             ----------cc-----cccCCCCceEeCCCCCCccccc
Confidence                      00     0001345699999999999763

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=118.89  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=70.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCe----ecCCCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--FKFFPK-----DRKMALLQLDSIEEAITALIQMHNH----QLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~----~i~g~~  167 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..  |+|+.+     .+|+|||+|.+. +|.+|+..|||.    .+.| +
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G-~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-r   98 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYA-VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-K   98 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGC-CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-C
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-E
Confidence            678999999999999999999999999 8966  888753     379999999999 999999999999    9999 8


Q ss_pred             eEEEEecCcccc
Q psy17274        168 HLRVSFSKSNIQ  179 (184)
Q Consensus       168 ~l~v~~~~~~~~  179 (184)
                      .|+|.|++....
T Consensus        99 ~l~V~~a~~~~~  110 (131)
T 2m2b_A           99 TINVEFAKGSKR  110 (131)
T ss_dssp             CCCCEECCCSCC
T ss_pred             EEEEEECCCCCC
Confidence            999999987643

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.77  E-value=3.2e-19  Score=114.03  Aligned_cols=75  Identities=17%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++|||+|||.++++++|+++|++|| .|..+++..+     ++|+|||+|.+.+ |.+|+..|||..++| +.|+|.++.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-~~l~V~~a~   78 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-RTIRVTEAN   78 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-SSCSEEEC-
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC-eEEEEEEcC
Confidence            4799999999999999999999999 9999998752     3789999999999 999999999999999 899999998


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      ...
T Consensus        79 ~~~   81 (90)
T 2ki2_A           79 PKK   81 (90)
T ss_dssp             ---
T ss_pred             CCC
Confidence            764

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.77  E-value=1.9e-18  Score=121.49  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..++|||+|||..+|+++|+++|++||. .|..|+++.+     .+|+|||+|.+.++|.+||..|||..|+| +.|+|.
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G-r~l~V~  132 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG-EKVDVR  132 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEeEEE
Confidence            4678999999999999999999999995 5888988753     26899999999999999999999999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      ++..+
T Consensus       133 ~a~~~  137 (156)
T 3n9u_C          133 PATRQ  137 (156)
T ss_dssp             ECCHH
T ss_pred             EcCCC
Confidence            99765

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=113.99  Aligned_cols=77  Identities=16%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||+.+++++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|+.. ||..+.| +.|+|.|
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-~~l~V~~   91 (105)
T 2dh8_A           15 EIGKLFVGGLDWSTTQETLRSYFSQYG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-RNIDPKP   91 (105)
T ss_dssp             SSSEECCBSCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-EEEBCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-EEEEEEE
Confidence            678999999999999999999999999 9999998763     258999999999999999999 9999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++++.
T Consensus        92 a~~~~   96 (105)
T 2dh8_A           92 CTPRG   96 (105)
T ss_dssp             SCCSS
T ss_pred             ccCCC
Confidence            98764

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.76  E-value=4.2e-18  Score=112.75  Aligned_cols=78  Identities=15%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++..+     .+|+|||+|.+.++|.+|+..+ |..++| +.|+|.+
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g-~~l~V~~  100 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS-KTIDPKV  100 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT-EEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-EEEEEEE
Confidence            567899999999999999999999999 9999999753     3689999999999999999986 599999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      +..+..
T Consensus       101 a~~~~~  106 (109)
T 2rs2_A          101 AFPRRA  106 (109)
T ss_dssp             CCCCCC
T ss_pred             ccCCCC
Confidence            987643

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.76  E-value=6.9e-19  Score=114.77  Aligned_cols=75  Identities=21%  Similarity=0.432  Sum_probs=67.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      +.++|||+|||.++++++|+++|++||  |..|++..+      .+|+|||+|.+.++|.+|+ .|||..++| +.|+|.
T Consensus        18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g-~~l~V~   93 (100)
T 2j76_E           18 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-RRIRVD   93 (100)
T ss_dssp             --CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT-BCCCCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC-eEEEEE
Confidence            678999999999999999999999999  888988753      2689999999999999999 899999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      +++..
T Consensus        94 ~a~~~   98 (100)
T 2j76_E           94 VADQA   98 (100)
T ss_dssp             ECCCS
T ss_pred             eccCC
Confidence            99864

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=4.9e-18  Score=110.97  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=66.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ++++|||+|||..+|+++|+++|++|+ .|.-+.-..  ..+++|||+|.+.++|.+|+..|||..|.| +.|+|.|+++
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~   91 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-NKVTLDWAKP   91 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCC
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCe-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEecC
Confidence            678899999999999999999999887 543332111  125899999999999999999999999999 8999999987


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      +.
T Consensus        92 ~~   93 (102)
T 2fc8_A           92 KG   93 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=1.1e-17  Score=109.56  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=69.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+++++|+++|++|| .|..|++..+.     +++|||+|.+.++|.+|+.  +++.+.| +.|+|.|
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-~~l~v~~   89 (103)
T 2cqg_A           14 KTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-RWCDCKL   89 (103)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-EEEEEEC
T ss_pred             CCCEEEEEcCCCcCCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC-eEEEEEe
Confidence            677899999999999999999999999 99999987632     5899999999999999999  5889999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus        90 a~~~~   94 (103)
T 2cqg_A           90 PNSKQ   94 (103)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            98764

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.76  E-value=2.6e-18  Score=114.82  Aligned_cols=75  Identities=17%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe-----EEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH-----LRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~-----l~v~~  173 (184)
                      ...+|||.|||+++|+++|+++|++|| .|..|.+..+  ++|||+|++.++|.+||+.|||..+.| +.     |+|..
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~~~~~~i~v~~   90 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRS-HEGETAYIRVKV   90 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCC-TTSCCCBCEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECC-cEeeeEEEEecc
Confidence            356899999999999999999999999 9999998754  999999999999999999999999999 78     77776


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus        91 ~~~~   94 (115)
T 3beg_B           91 DGPR   94 (115)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            6544

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=9e-18  Score=110.21  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|||+|||+++|+++|+++|++|| .|.. |.+..+    .+|+|||+|.+.++|.+|+.. ||..++| +.|+|.+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g-r~i~v~~   90 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH-RYIEIFK   90 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCC-EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-SCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC-cEEEEEE
Confidence            567899999999999999999999999 8876 776542    378999999999999999998 9999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        91 ~~~~   94 (104)
T 1wg5_A           91 SSRA   94 (104)
T ss_dssp             ECTT
T ss_pred             CCHH
Confidence            8765

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.75  E-value=2.5e-18  Score=119.12  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|..        +.+..  ..+|+|||+|.+.++|.+|+..|||..+.| +.
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~  121 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYV-DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-KP  121 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGC-CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT-EE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC-cE
Confidence            678999999999999999999999999 7765        33332  457999999999999999999999999999 89


Q ss_pred             EEEEecCccc
Q psy17274        169 LRVSFSKSNI  178 (184)
Q Consensus       169 l~v~~~~~~~  178 (184)
                      |+|.|+++..
T Consensus       122 l~V~~a~~~~  131 (143)
T 3egn_A          122 MVVQFARSAR  131 (143)
T ss_dssp             CEEEECCCSC
T ss_pred             EEEEECCCCC
Confidence            9999998753

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.75  E-value=1e-18  Score=114.08  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|||+|||.++|+++|+++|++|| .|.. .++.     ..+|+|||+|.+.++|.+|++ |||..+.| +.|+|.|
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~V~~   91 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELF-AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEK   91 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHH-HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-BCCEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-Ccce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-cEEEEEE
Confidence            567899999999999999999999999 7766 3332     357999999999999999999 99999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus        92 a~~~~   96 (101)
T 1fj7_A           92 PKGRD   96 (101)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            98753

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.75  E-value=1.4e-18  Score=107.75  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++|||+|||+++++++|+++|++|| .|..+.+..+     ++|+|||+|.+.++|.+|+..+| ..++| +.|+|.++
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-~~l~v~~a   76 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-KTIDPKVA   76 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-CCCEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC-EEEEEEec
Confidence            3699999999999999999999999 9999998753     26899999999999999999999 99999 89999986

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=2e-18  Score=116.83  Aligned_cols=76  Identities=12%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|||+|||+++|+++|+++|++|| .|..+.++.     ..+|+|||+|.+.++|.+||. |||..|+| +.|+|.+
T Consensus        24 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~V~~  100 (124)
T 1wel_A           24 AGFCVYLKGLPFEAENKHVIDFFKKLD-IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN-RFIQVHP  100 (124)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSC-BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT-SCBEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEEE
Confidence            567999999999999999999999999 876633332     136899999999999999999 99999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus       101 a~~~  104 (124)
T 1wel_A          101 ITKK  104 (124)
T ss_dssp             ECHH
T ss_pred             CCHH
Confidence            8765

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=5.6e-18  Score=113.26  Aligned_cols=78  Identities=13%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|..|++..+     .+|+|||+|.+.++|.+|+.. ||..+.| +.|+|.|
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~V~~  102 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-RVVEPKR  102 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-EEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-EEEEEEE
Confidence            458899999999999999999999999 9999998763     368999999999999999998 9999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++++..
T Consensus       103 a~~~~~  108 (116)
T 1x4b_A          103 AVAREE  108 (116)
T ss_dssp             CSSCCC
T ss_pred             CCCCcc
Confidence            987643

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=9.4e-18  Score=107.39  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ...+|||+|||.++++++|+++|++|+  |..|++..+    .+|+|||+|.+.++|.+|+. |||..++| +.|+|.++
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-r~i~v~~a   84 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG-RYIEVFRE   84 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTSC--CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT-EEEEEEEE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhCC--ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC-cEEEEEEC
Confidence            567899999999999999999999994  778888753    26899999999999999999 99999999 89999999


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      +.+.
T Consensus        85 ~~~~   88 (91)
T 2dgw_A           85 KSGP   88 (91)
T ss_dssp             SSCC
T ss_pred             CcCC
Confidence            8764

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.75  E-value=5.1e-18  Score=113.89  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=69.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ...+|||+|||+++|+++|+++|++|| .   |..|++..+    .+|+|||+|.+.++|.+|++ |||..|+| +.|+|
T Consensus        16 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~V   92 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQNFLSDCT-IHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH-RYIEV   92 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTSC-BTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT-EEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC-CccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC-eEEEE
Confidence            567899999999999999999999999 7   788888752    36899999999999999999 99999999 89999


Q ss_pred             EecCcc
Q psy17274        172 SFSKSN  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      .++...
T Consensus        93 ~~a~~~   98 (118)
T 2db1_A           93 FKSHRT   98 (118)
T ss_dssp             EEECHH
T ss_pred             EECCHH
Confidence            998754

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=119.89  Aligned_cols=81  Identities=21%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .++++|||+|||+.+++++|+++|++|| .|..|.+..+    .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus        86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-r~l~V~~  163 (177)
T 2f3j_A           86 ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQL  163 (177)
T ss_dssp             TTCEEEEEECCCSCCCHHHHHHHHHHTS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-SBCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            3578999999999999999999999999 9999998753    36899999999999999999999999999 8999999


Q ss_pred             cCccccc
Q psy17274        174 SKSNIQD  180 (184)
Q Consensus       174 ~~~~~~~  180 (184)
                      +......
T Consensus       164 a~~~~~~  170 (177)
T 2f3j_A          164 VASQIDL  170 (177)
T ss_dssp             ESSGGGG
T ss_pred             ecCCCCC
Confidence            9877544

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.74  E-value=3.1e-18  Score=117.51  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ...+|||+|||+++|+++|+++|++|| .   |..|+|..+    ++|+|||+|.+.++|.+|++ |||..++| +.|+|
T Consensus        43 ~~~~lfVgnLp~~~te~dL~~~F~~~G-~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-r~i~V  119 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNFLSDCT-IHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-RYIEV  119 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHTTTCC-CSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS-SEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC-EEEEE
Confidence            567899999999999999999999999 7   788888752    36899999999999999999 99999999 89999


Q ss_pred             EecCcc
Q psy17274        172 SFSKSN  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      .++...
T Consensus       120 ~~a~~~  125 (136)
T 2hgl_A          120 FKSHRT  125 (136)
T ss_dssp             EECCHH
T ss_pred             EECChH
Confidence            998755

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=6.5e-18  Score=108.84  Aligned_cols=75  Identities=23%  Similarity=0.356  Sum_probs=66.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCC-ceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR-KMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~-~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ..++|||+|||..+|+++|+++|++|| .|..| +..... .+|||+|.+.++|.+|+. |||..++| +.|+|.++...
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g-~~l~V~~a~~~   82 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-PVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG-HRLRVRPREQK   82 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTS-CEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT-EECCCBCSCCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC-EEEEEEECCcC
Confidence            467899999999999999999999999 89988 332222 299999999999999999 99999999 89999998755

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.73  E-value=1.3e-17  Score=122.94  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |.++|||+|||+++|+++|+++|++|| .|.+|+|..+     ++|+|||+|.+.++|.+|+..|||..+.| +.|++.+
T Consensus        14 p~~tlfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g-~~i~~~~   91 (213)
T 4f02_A           14 PMASLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG-KPVRIMW   91 (213)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC-ccccccc
Confidence            678999999999999999999999999 9999999753     35899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        92 ~~~~   95 (213)
T 4f02_A           92 SQRD   95 (213)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8765

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.73  E-value=1.8e-17  Score=123.34  Aligned_cols=78  Identities=26%  Similarity=0.355  Sum_probs=73.7

Q ss_pred             CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         98 PPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        98 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      +++++|||+|||+ ++++++|+++|++|| .|..|++..+.+++|||+|.+.++|.+|++.|||..+.| +.|+|.|++.
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~v~~a~~  109 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKH  109 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS-SBCEEECCSC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEecC
Confidence            3788999999999 999999999999999 999999997668999999999999999999999999999 8999999986


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus       110 ~  110 (229)
T 2adc_A          110 Q  110 (229)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.73  E-value=3.6e-17  Score=115.32  Aligned_cols=79  Identities=15%  Similarity=0.338  Sum_probs=71.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+++|+++|+++|++|| .|..+++..+.     +|+|||+|.+.++|..|++.|||..+.| +.|+|.|
T Consensus         1 s~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~   78 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-KTIKVSY   78 (167)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CcceEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC-ceEEEEe
Confidence            367899999999999999999999999 99999997632     4899999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      +++...
T Consensus        79 ~~~~~~   84 (167)
T 1fxl_A           79 ARPSSA   84 (167)
T ss_dssp             CCCCCG
T ss_pred             cCCCcc
Confidence            986643

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=4e-18  Score=108.46  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||.++|+++|+++|++|| .|..+++..+.+++|||+|.+.++|.+|+..  +..+.| +.|+|.+++++.
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g-~~l~v~~a~~~~   79 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYG-DVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKG-ISVHISNAEPKH   79 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTS-CCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETT-EEEEEECCCCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCC-EEEEEEecCCCC
Confidence            578999999999999999999999999 9999999876799999999999999764221  344588 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        80 ~   80 (88)
T 1wf0_A           80 N   80 (88)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.73  E-value=2.5e-17  Score=116.41  Aligned_cols=78  Identities=17%  Similarity=0.322  Sum_probs=71.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+++++++|+++|++|| .|.++++..+     .+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~   79 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-KRLKVSY   79 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC-cEEEEEe
Confidence            578999999999999999999999999 9999998763     25899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      +++..
T Consensus        80 ~~~~~   84 (168)
T 1b7f_A           80 ARPGG   84 (168)
T ss_dssp             CCCCS
T ss_pred             cCCCc
Confidence            98654

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.73  E-value=1.9e-17  Score=104.95  Aligned_cols=72  Identities=22%  Similarity=0.447  Sum_probs=65.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc----CC------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEK----GF------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      +.++|||+|||+++++++|+++|++|    |.      .|.++++. .++++|||+|.+.++|.+|+ .|||..+.| +.
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g-~~   81 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS   81 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETT-EE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECC-eE
Confidence            57899999999999999999999999    62      58888877 47999999999999999999 999999999 89


Q ss_pred             EEEEe
Q psy17274        169 LRVSF  173 (184)
Q Consensus       169 l~v~~  173 (184)
                      |+|+.
T Consensus        82 l~V~r   86 (87)
T 2hzc_A           82 LKIRR   86 (87)
T ss_dssp             CEEEC
T ss_pred             EEEeC
Confidence            99973

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.73  E-value=3.3e-17  Score=107.60  Aligned_cols=77  Identities=21%  Similarity=0.335  Sum_probs=68.3

Q ss_pred             CCCEEEEeCCCC-----CCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         99 PSPTLHLSNIPA-----SVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~-----~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      |+++|+|.||..     .-++++|+++|++|| .|.+|.|...      ++|+|||+|.+.++|.+|+..|||+.+.| |
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-r   84 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-R   84 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-E
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-c
Confidence            789999999963     236899999999999 9999998742      37999999999999999999999999999 9


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      .|+|.|+...
T Consensus        85 ~i~v~~a~~~   94 (105)
T 2pe8_A           85 VVKACFYNLD   94 (105)
T ss_dssp             ECEEEECCHH
T ss_pred             EEEEEEcCHH
Confidence            9999998753

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.73  E-value=1.2e-17  Score=124.47  Aligned_cols=77  Identities=17%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             CCCEEEEeCCCCCC---------CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec------
Q psy17274         99 PSPTLHLSNIPASV---------TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL------  163 (184)
Q Consensus        99 ~~~~l~v~nlp~~~---------t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i------  163 (184)
                      ++++|||+|||..+         ++++|+++|++|| .|.+|+|+. ++|+|||+|.+.++|..|++.|||..|      
T Consensus       133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~  210 (240)
T 3u1l_A          133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-DIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK  210 (240)
T ss_dssp             CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-CEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred             CCceeecCCCChhhhcccccccCcHHHHHHHHHccC-CEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence            67899999999998         7999999999999 999999985 799999999999999999999999999      


Q ss_pred             ------CCCCeEEEEecCccc
Q psy17274        164 ------SEQSHLRVSFSKSNI  178 (184)
Q Consensus       164 ------~g~~~l~v~~~~~~~  178 (184)
                            .| +.|.|.|++...
T Consensus       211 e~~~~~~g-r~L~V~wA~~~p  230 (240)
T 3u1l_A          211 EWDDRREG-TGLLVKWANEDP  230 (240)
T ss_dssp             TGGGGGGS-CCCEEEECC---
T ss_pred             cccccCCC-CEEEEEEccCCC
Confidence                  88 899999998653

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.72  E-value=6.2e-18  Score=111.55  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=69.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ...+|||+|||+++|+++|+++|++|| .   |..|++..+    .+|+|||+|.+.++|.+|+. |||..++| +.|+|
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i~V   86 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ-RYVEV   86 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSC-BTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS-SCCCC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcC-CcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC-eEEEE
Confidence            567899999999999999999999999 7   888988752    47899999999999999999 99999999 89999


Q ss_pred             EecCcc
Q psy17274        172 SFSKSN  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      .++...
T Consensus        87 ~~a~~~   92 (107)
T 2lmi_A           87 YEINNE   92 (107)
T ss_dssp             EECCHH
T ss_pred             EECCHH
Confidence            998764

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=6.6e-18  Score=110.48  Aligned_cols=76  Identities=12%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +..+|||.|||+++|+++|+++|++|| .+ .|+|..+    .+++|||+|.+.++|.+||+ +|+..|+| +.|+|..+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i~V~~~   89 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLN-PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH-RYVELFLN   89 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC-CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS-SCCEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEEEC
Confidence            567899999999999999999999999 55 7888653    26899999999999999995 79999999 89999998


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      ....
T Consensus        90 ~~~~   93 (102)
T 1wez_A           90 STAG   93 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7653

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.72  E-value=5e-18  Score=104.74  Aligned_cols=70  Identities=13%  Similarity=0.284  Sum_probs=63.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +|||+|||+.+++++|+++|++|| .|..+.+..+     .+|+|||+|.+.++|.+|++. +|..+.| +.|+|.++
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~v~~a   75 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL-SKCEIKVA   75 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT-BCCCEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC-EEEEEEEC
Confidence            489999999999999999999999 8999988642     378999999999999999995 9999999 89999875

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.72  E-value=2.7e-17  Score=111.43  Aligned_cols=77  Identities=21%  Similarity=0.390  Sum_probs=65.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCe-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDS-ALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|++||.|.+|++..+++|+ |||+|.+.++|+.|++.|||..++|  ++|+|+|++.....+.....    ..+||
T Consensus        45 L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~~----~srDy  120 (130)
T 3zzy_A           45 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNND----KSRDY  120 (130)
T ss_dssp             HHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCSS----SEEET
T ss_pred             HHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecCC----CcccC
Confidence            67999999999999988877787 9999999999999999999999998  99999999988776654432    34566


Q ss_pred             CCCC
Q psy17274         78 TASP   81 (184)
Q Consensus        78 ~~~~   81 (184)
                      +++.
T Consensus       121 t~~~  124 (130)
T 3zzy_A          121 TRPD  124 (130)
T ss_dssp             TCTT
T ss_pred             CCCC
Confidence            6543

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.55  E-value=5.2e-19  Score=118.38  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      ++++|||+|||..+++++|+++|++|| .|..        |++..+     .+++|||+|.+.++|.+|+..|||..+.|
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   84 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG   84 (116)
Confidence            678899999999999999999999999 8887        777642     36899999999999999999999999999


Q ss_pred             CCeEEEEecCccc
Q psy17274        166 QSHLRVSFSKSNI  178 (184)
Q Consensus       166 ~~~l~v~~~~~~~  178 (184)
                       +.|+|.|++++.
T Consensus        85 -~~l~V~~a~~~~   96 (116)
T 2lcw_A           85 -NPIKVSFATRRA   96 (116)
Confidence             899999998764

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.71  E-value=1.6e-17  Score=123.68  Aligned_cols=78  Identities=19%  Similarity=0.260  Sum_probs=69.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..++|||+|||..+|+++|+++|++||. .|..|+|+.+     ++++|||+|.+.++|.+||+.|||+.|.| +.|+|.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G-r~l~V~  145 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVT  145 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT-BCCEEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC-EEeEEE
Confidence            4568999999999999999999999995 5889988753     36899999999999999999999999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |++.+
T Consensus       146 ~a~~~  150 (229)
T 3q2s_C          146 PVNKQ  150 (229)
T ss_dssp             ECCHH
T ss_pred             ECCCC
Confidence            98765

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.71  E-value=1.3e-16  Score=106.07  Aligned_cols=77  Identities=10%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             CCCEEEEeCCCCCCC-----------HHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274         99 PSPTLHLSNIPASVT-----------EDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSEQ  166 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t-----------~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~  166 (184)
                      ++++|+|.||....+           +++|+++|++|| .|..|.|.. ..+|+|||+|.+.++|.+|+..|||+.+.| 
T Consensus        14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-   91 (112)
T 2dit_A           14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG-QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG-   91 (112)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS-CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred             CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC-CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence            789999999954332           689999999999 999997643 347999999999999999999999999999 


Q ss_pred             CeEEEEecCcc
Q psy17274        167 SHLRVSFSKSN  177 (184)
Q Consensus       167 ~~l~v~~~~~~  177 (184)
                      ++|+|.|+...
T Consensus        92 r~l~v~~a~~~  102 (112)
T 2dit_A           92 RQITAQAWDGT  102 (112)
T ss_dssp             EECEEEECCSC
T ss_pred             cEEEEEEeCCC
Confidence            89999998764

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.71  E-value=3e-17  Score=119.26  Aligned_cols=77  Identities=26%  Similarity=0.358  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+++|||+|||+ .+++++|+++|++|| .|..|++..+.+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|++..
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~a~~~   79 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKHQ   79 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTC-CCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSS-CCCEEEECCCC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecC-eEEEEEEecCC
Confidence            357899999999 999999999999999 899999987668999999999999999999999999999 89999999865

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.5e-17  Score=113.87  Aligned_cols=76  Identities=20%  Similarity=0.350  Sum_probs=69.9

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ++|||+|||+++|+++|+++|++|| .|.++++..+    .+|+|||+|.+.++|.+|+..|||..+.| +.|+|.++..
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~i~v~~~~~   78 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-NIVKINWAFQ   78 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECCC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-CeeEEEEcCC
Confidence            4799999999999999999999999 9999998753    35899999999999999999999999999 8999999976


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      ..
T Consensus        79 ~~   80 (166)
T 3md3_A           79 SQ   80 (166)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=7.9e-17  Score=106.45  Aligned_cols=74  Identities=15%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ..+|||+|||+++|+++|+++|++|+  |..|+|..    +.+|+|||+|.+.++|.+|+ .|||..|+| |.|+|..+.
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-r~i~V~~a~   91 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGLR--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-RYVEVSPAT   91 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTSC--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT-EEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccCC--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEECC
Confidence            56899999999999999999999995  67888874    24799999999999999999 699999999 899998876


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ..
T Consensus        92 ~~   93 (109)
T 2dnn_A           92 ER   93 (109)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.69  E-value=1.7e-17  Score=108.41  Aligned_cols=75  Identities=13%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||..+++++|+++|++|| .|..+++..+    .+|+|||+|.+.++|.+|+.  ||..++| +.|.|.++
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-~~l~v~~a   83 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG-KKLKLGPA   83 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT-EECEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC-EEEEEEEC
Confidence            467899999999999999999999999 9999998763    36899999999999999999  9999999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ...
T Consensus        84 ~~~   86 (102)
T 2xs2_A           84 IRK   86 (102)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            754

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.69  E-value=1.1e-16  Score=105.03  Aligned_cols=77  Identities=13%  Similarity=0.311  Sum_probs=67.5

Q ss_pred             CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274         99 PSPTLHLSNI--PASVT--------EDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNH  161 (184)
Q Consensus        99 ~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~  161 (184)
                      |+++|.|.|+  |..+.        +++|+++|++|| .|.+|.|..+       ++|+|||+|.+.++|.+|+..|||+
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G-~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~   82 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG-LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR   82 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS-CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC-CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence            7999999998  44443        379999999999 9999998742       3699999999999999999999999


Q ss_pred             ecCCCCeEEEEecCcc
Q psy17274        162 QLSEQSHLRVSFSKSN  177 (184)
Q Consensus       162 ~i~g~~~l~v~~~~~~  177 (184)
                      .++| |+|+|+|....
T Consensus        83 ~f~G-R~i~v~~~~~~   97 (105)
T 3v4m_A           83 KFAN-RVVVTKYCDPD   97 (105)
T ss_dssp             EETT-EECEEEEECHH
T ss_pred             EeCC-CEEEEEEeCHH
Confidence            9999 99999998643

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.68  E-value=1.9e-16  Score=121.08  Aligned_cols=78  Identities=23%  Similarity=0.421  Sum_probs=72.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ++++|||+|||.++|+++|+    ++|++|| .|..|++..  +.+|+|||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus         8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~   85 (282)
T 3pgw_A            8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRIQ   85 (282)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhccC-CeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC-cEEEEE
Confidence            78899999999999999977    9999999 999999875  347999999999999999999999999999 899999


Q ss_pred             ecCccc
Q psy17274        173 FSKSNI  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      |++...
T Consensus        86 ~a~~~~   91 (282)
T 3pgw_A           86 YAKTDS   91 (282)
T ss_pred             EeccCc
Confidence            998754

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.6e-17  Score=110.34  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCce----eEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v----~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      ...+|||+|||+++|+++|+++|++|| .|    ..|.|..+    .+|+|||+|.+.++|.+|++. |++.|+| |.|+
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g-~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g-R~i~   98 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHC-PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK-RYIE   98 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTS-CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS-CEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhC-CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC-eEEE
Confidence            467899999999999999999999999 64    67887642    368999999999999999996 9999999 8999


Q ss_pred             EEecCcc
Q psy17274        171 VSFSKSN  177 (184)
Q Consensus       171 v~~~~~~  177 (184)
                      |..+...
T Consensus        99 V~~a~~~  105 (123)
T 2dha_A           99 LFRSTAA  105 (123)
T ss_dssp             CEEECHH
T ss_pred             EEECCHH
Confidence            9987654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.67  E-value=2.2e-16  Score=115.95  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||.++|+++|+++|++|| .|..|++..+     .+++|||+|.+.++|.+|++.|||..+.| +.|+|.+
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~~  104 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-RNIKVGR  104 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC--CCCEEEC
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC-eeEEEec
Confidence            467899999999999999999999999 9999999753     47999999999999999999999999999 8999998


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      +....
T Consensus       105 ~~~~~  109 (216)
T 2qfj_A          105 PSNIG  109 (216)
T ss_dssp             CSCCG
T ss_pred             CCCcc
Confidence            87653

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.66  E-value=5e-16  Score=117.75  Aligned_cols=76  Identities=24%  Similarity=0.389  Sum_probs=71.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      ++++|||+|||+++|+++|+++|++|| .|..|.+. .++|+|||+|.+.++|..|+..|||..+.| +.|+|.|+...
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~~~   96 (261)
T 3sde_A           21 QRCRLFVGNLPTDITEEDFKRLFERYG-EPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKS-RPLRIRFATHG   96 (261)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHTGGGC-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECC-ceeEeeecccC
Confidence            567899999999999999999999999 99999887 479999999999999999999999999999 89999999764

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=4.3e-16  Score=104.97  Aligned_cols=76  Identities=13%  Similarity=0.274  Sum_probs=62.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCe-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDS-ALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|++||.|.+|+++.+ .|+ |||+|.+.++|..|++.|||..++|  ++|+|++++...+.+....    ...+||
T Consensus        42 L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v~~n~----~~srDy  116 (124)
T 2e5i_A           42 LYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRND----NDSWDY  116 (124)
T ss_dssp             HHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCCSSCS----SSEEES
T ss_pred             HHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcceeecCC----CCCCCC
Confidence            6789999999999998775 595 9999999999999999999999988  6999999997766544332    245566


Q ss_pred             CCCC
Q psy17274         78 TASP   81 (184)
Q Consensus        78 ~~~~   81 (184)
                      +.+.
T Consensus       117 t~~~  120 (124)
T 2e5i_A          117 TKPY  120 (124)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.66  E-value=1.2e-16  Score=108.03  Aligned_cols=76  Identities=22%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee-EEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK-GFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~-~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|||+|||+++|+++|+++|++|+ .+. .|+|..+    .+|+|||+|.+.++|.+|++. ++..|+| |.|+|..
T Consensus        41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g-R~I~V~~  117 (126)
T 2hgm_A           41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH-RYIEVFK  117 (126)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT-BCCCCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC-EEEEEEE
Confidence            467899999999999999999999997 442 7887642    479999999999999999985 8899999 8999998


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus       118 a~~~  121 (126)
T 2hgm_A          118 SSQE  121 (126)
T ss_dssp             ECHH
T ss_pred             CCHH
Confidence            8654

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.66  E-value=4.1e-17  Score=112.28  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ..++|||.|||+++|+++|+++|++|| .+ .|+|..+    .+|+|||+|++.++|.+|| .+|+..++| +.|+|.++
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-R~i~V~~a  120 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLN-PV-RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH-RYIELFLN  120 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCC-CS-EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-CCCCCEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC-EEEEEEEC
Confidence            467899999999999999999999999 44 7887642    3789999999999999999 799999999 89999998


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      ..+.
T Consensus       121 ~~~~  124 (139)
T 2hgn_A          121 STTG  124 (139)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            7653

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.64  E-value=5.7e-16  Score=112.07  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+++|+++|+++|++|| .|..|++..+     ++|+|||+|.+.++|.+|+.. +|..+.| +.|+|.+
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-~~l~v~~   88 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-RVVEPKR   88 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC-EEeeeec
Confidence            578999999999999999999999999 9999998763     258999999999999999986 9999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        89 ~~~~   92 (196)
T 1l3k_A           89 AVSR   92 (196)
T ss_dssp             CCC-
T ss_pred             ccCc
Confidence            8765

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.64  E-value=6.5e-16  Score=109.69  Aligned_cols=78  Identities=15%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecC---CCCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLS---EQSH  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~---g~~~  168 (184)
                      .+++|||+|||+++|+++|+++|++|| .|.++++...       ++|+|||+|.+.++|.+|++.|||..+.   + +.
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~-~~   79 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH-HP   79 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS-SC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc-cc
Confidence            467899999999999999999999999 9999998752       3579999999999999999999998886   4 68


Q ss_pred             EEEEecCccc
Q psy17274        169 LRVSFSKSNI  178 (184)
Q Consensus       169 l~v~~~~~~~  178 (184)
                      +.+.++....
T Consensus        80 ~~~~~~~~~~   89 (175)
T 3nmr_A           80 IQMKPADSEK   89 (175)
T ss_dssp             CEEEECGGGC
T ss_pred             eEEccccccc
Confidence            8888877553

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.64  E-value=2.4e-16  Score=98.89  Aligned_cols=56  Identities=13%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.+||++||+|.++++.. ++|||||+|.++++|.+|++.|||..+.|++|+|+++.
T Consensus        24 L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~   79 (89)
T 2wbr_A           24 LRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS   79 (89)
T ss_dssp             HHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred             HHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence            578999999999999865 78999999999999999999999999999999999885

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.64  E-value=5e-16  Score=109.00  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=62.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY   77 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+++|++||+|.+|++..+ ++|+|||+|.+.++|+.|++.|||..++|  ++|+|+|++.....+....    ...+||
T Consensus        63 L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~nn----~rsrDy  138 (164)
T 1sjr_A           63 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNN----DKSRDY  138 (164)
T ss_dssp             HHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCCCS----SSEEES
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccccC----CCCccc
Confidence            5789999999999998763 57899999999999999999999999976  9999999997766544322    244566


Q ss_pred             CCCC
Q psy17274         78 TASP   81 (184)
Q Consensus        78 ~~~~   81 (184)
                      +.+.
T Consensus       139 t~p~  142 (164)
T 1sjr_A          139 TRPD  142 (164)
T ss_dssp             SCSC
T ss_pred             cCCC
Confidence            5543

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=5.6e-16  Score=103.22  Aligned_cols=71  Identities=14%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|. +.++.        ..+|+|||+|++.++|.+|++.|+  .++| +.|.
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G-~~~~   81 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFG-PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDG-KLYL   81 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTC-CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETT-EEEE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCC-cEEE
Confidence            467899999999999999999999999 888 66653        237899999999999999999993  2555 5555


Q ss_pred             EEec
Q psy17274        171 VSFS  174 (184)
Q Consensus       171 v~~~  174 (184)
                      +..+
T Consensus        82 ~~~~   85 (114)
T 2dnl_A           82 CVSS   85 (114)
T ss_dssp             EECC
T ss_pred             eccC
Confidence            5433

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.63  E-value=9.1e-16  Score=102.65  Aligned_cols=76  Identities=13%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCCEEEEeCCCC--CC---CHHHHHHHHHhcCCceeEEEEccCC---------CceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274         99 PSPTLHLSNIPA--SV---TEDELKEAFTEKGFTVKGFKFFPKD---------RKMALLQLDSIEEAITALIQMHNHQLS  164 (184)
Q Consensus        99 ~~~~l~v~nlp~--~~---t~~~l~~~F~~~G~~v~~v~v~~~~---------~~~afV~f~~~~~A~~Ai~~lng~~i~  164 (184)
                      |+++|+|.|+-.  .+   -++||++.|++|| .|.+|.|..+.         +|+|||+|.+.++|.+|+..|||+.++
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G-~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~   97 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA   97 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC-CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence            789999999842  22   2789999999999 99999987521         389999999999999999999999999


Q ss_pred             CCCeEEEEecCc
Q psy17274        165 EQSHLRVSFSKS  176 (184)
Q Consensus       165 g~~~l~v~~~~~  176 (184)
                      | |+|+|+|...
T Consensus        98 G-R~i~v~~~~~  108 (118)
T 3ue2_A           98 G-RKVVAEVYDQ  108 (118)
T ss_dssp             T-EECEEEEECH
T ss_pred             C-cEEEEEEcCh
Confidence            9 9999999864

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.63  E-value=2e-15  Score=100.30  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             CCCEEEEeCCCCCCC----------HHHHHHHHHhcCCceeEEEEccCC-CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274         99 PSPTLHLSNIPASVT----------EDELKEAFTEKGFTVKGFKFFPKD-RKMALLQLDSIEEAITALIQMHNHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~~v~~v~v~~~~-~~~afV~f~~~~~A~~Ai~~lng~~i~g~~  167 (184)
                      |+++|.|.|+-..-.          ++||++.|++|| .|.+|.|.... +|+|||+|.+.++|.+|+..|||+.++| |
T Consensus         6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG-~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-R   83 (114)
T 3s6e_A            6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG-GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-K   83 (114)
T ss_dssp             CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT-CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT-E
T ss_pred             CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC-CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-E
Confidence            789999999843221          568899999999 99999987543 7999999999999999999999999999 9


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      .|+|+|+...
T Consensus        84 ~i~v~~~~~~   93 (114)
T 3s6e_A           84 MITAAYVPLP   93 (114)
T ss_dssp             ECEEEEECHH
T ss_pred             EEEEEEEcHH
Confidence            9999998643

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.63  E-value=2.7e-16  Score=102.47  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|+++..++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        17 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A           17 LERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             HHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             HHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            568999999999999887678999999999999999999999999999999999998543

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.63  E-value=4.3e-16  Score=101.23  Aligned_cols=58  Identities=19%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++++     .++|||||+|.+.++|++|++.|||..+.|++|+|+|+++
T Consensus        36 L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            578999999999999986     2468999999999999999999999999999999999973

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.62  E-value=1.4e-15  Score=118.88  Aligned_cols=74  Identities=15%  Similarity=0.313  Sum_probs=66.9

Q ss_pred             CCCEEEEeC--CCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC---CCC--eEEE
Q psy17274         99 PSPTLHLSN--IPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS---EQS--HLRV  171 (184)
Q Consensus        99 ~~~~l~v~n--lp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~---g~~--~l~v  171 (184)
                      |+++|||+|  |+..+|+++|+++|++|| .|.+|.+. .+||+|||+|++.++|.+|++.|||..+.   | +  .|.+
T Consensus        17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G-~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g-~~~~ly~   93 (345)
T 3tht_A           17 ATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG-QKITLYL   93 (345)
T ss_dssp             CCSEEEEETCSGGGTCCHHHHHHHHHTTS-CEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTS-CEEECEE
T ss_pred             CCCEEEEEcCCCCCCCCHHHHHHHHHhcC-CeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccC-CceEEEE
Confidence            789999999  578999999999999999 99999776 48999999999999999999999999984   3 3  6889


Q ss_pred             EecC
Q psy17274        172 SFSK  175 (184)
Q Consensus       172 ~~~~  175 (184)
                      +|..
T Consensus        94 ~~~~   97 (345)
T 3tht_A           94 NFVE   97 (345)
T ss_dssp             EECS
T ss_pred             EEee
Confidence            9985

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.62  E-value=1.3e-15  Score=110.54  Aligned_cols=76  Identities=21%  Similarity=0.300  Sum_probs=67.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +.++|||+|||+.+|+++|+++|++|| .|..|++...    .+|+|||+|++.++|.+|+..++ ..++| +.|+|.++
T Consensus       108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-r~l~V~~~  184 (193)
T 2voo_A          108 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE-TDLLILFK  184 (193)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT-EECEEEET
T ss_pred             ccCEEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC-EEEEEEEh
Confidence            357899999999999999999999999 9999998752    36999999999999999998765 58999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +.-
T Consensus       185 ~~y  187 (193)
T 2voo_A          185 DDY  187 (193)
T ss_dssp             TTC
T ss_pred             HHH
Confidence            754

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.62  E-value=1.9e-15  Score=107.16  Aligned_cols=76  Identities=21%  Similarity=0.424  Sum_probs=67.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc----CC------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEK----GF------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      ++++|||+|||+++|+++|+++|++|    |.      .|..+.+. .++|+|||+|.+.++|.+|+ .|||..+.| ++
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~g-~~   79 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS   79 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEETT-EE
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEecC-ce
Confidence            57899999999999999999999999    52      46666665 47999999999999999999 899999999 89


Q ss_pred             EEEEecCcc
Q psy17274        169 LRVSFSKSN  177 (184)
Q Consensus       169 l~v~~~~~~  177 (184)
                      |+|.+++..
T Consensus        80 i~v~~~~~~   88 (172)
T 2g4b_A           80 LKIRRPHDY   88 (172)
T ss_dssp             CEEECCSSC
T ss_pred             eeecCCccc
Confidence            999998764

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.62  E-value=7.9e-16  Score=99.60  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLR--VFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|++++ .+|+|||+|.+.++|..|++.|+|..  +.|++|+|.||+.+.
T Consensus        38 L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~   98 (100)
T 3r27_A           38 LVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK   98 (100)
T ss_dssp             HHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred             HHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence            578999999999999875 67999999999999999999999986  679999999998654

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.7e-15  Score=96.26  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=64.2

Q ss_pred             CCEEEEeCCC-------CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        100 SPTLHLSNIP-------ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       100 ~~~l~v~nlp-------~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      .+.|.|.-..       +.+++++|+++|++|| .|..|.+....+|+|||+|++.++|..|+..+++  +.| ++|+|.
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G-~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g-~~l~V~   85 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG-EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVD-NPLKIS   85 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS-CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSS-SBCEEE
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcC-CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCC-CeEEEE
Confidence            3456665433       5689999999999999 9999999877899999999999999999998665  578 899999


Q ss_pred             ecCcccc
Q psy17274        173 FSKSNIQ  179 (184)
Q Consensus       173 ~~~~~~~  179 (184)
                      |++.+..
T Consensus        86 ~a~~~~~   92 (100)
T 2d9o_A           86 WLEGQPQ   92 (100)
T ss_dssp             CSSCCCC
T ss_pred             EccCCCC
Confidence            9987754

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.2e-15  Score=102.10  Aligned_cols=75  Identities=16%  Similarity=0.263  Sum_probs=65.2

Q ss_pred             CEEEEeCC----CCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCC----HHH----HHHHHH--HhcCe
Q psy17274        101 PTLHLSNI----PASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDS----IEE----AITALI--QMHNH  161 (184)
Q Consensus       101 ~~l~v~nl----p~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~----~~~----A~~Ai~--~lng~  161 (184)
                      ..|+|+||    |+++++++|+++|++|| +|.++.++.+     ++|+|||+|.+    +++    |.+|+.  .|||.
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~   81 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC   81 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence            46999999    99999999999999999 9999998752     36999999996    444    889999  89999


Q ss_pred             ecCCCCeEEEEecCcc
Q psy17274        162 QLSEQSHLRVSFSKSN  177 (184)
Q Consensus       162 ~i~g~~~l~v~~~~~~  177 (184)
                      .|+| ++|+|.+-+..
T Consensus        82 ~I~G-r~irV~ln~~g   96 (136)
T 2j8a_A           82 FIMG-FKFEVILNKHS   96 (136)
T ss_dssp             EETT-EEEEEEECCTT
T ss_pred             eecC-cEEEEEECccc
Confidence            9999 89999987655

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.60  E-value=4.1e-15  Score=107.67  Aligned_cols=76  Identities=20%  Similarity=0.368  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC----C------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKG----F------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G----~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      .+++|||+|||+++|+++|+++|++||    .      .|..+.+. .++|+|||+|.+.++|.+|+ .|||..+.| +.
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g-~~   79 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS   79 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETT-EE
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC-ce
Confidence            467999999999999999999999994    1      35556554 57999999999999999999 899999999 89


Q ss_pred             EEEEecCcc
Q psy17274        169 LRVSFSKSN  177 (184)
Q Consensus       169 l~v~~~~~~  177 (184)
                      |+|.+++..
T Consensus        80 i~v~~~~~~   88 (198)
T 2yh0_A           80 LKIRRPHDY   88 (198)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeCCCCC
Confidence            999998764

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.60  E-value=1.7e-15  Score=106.90  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+++|+++|+++|++|| .|.+|++..+     ++|+|||+|.+.++|.+|+..  +..+.| +.|+|.+
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-~~i~v~~   77 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG-KVIDPKR   77 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT-EECCCEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC-eEccccc
Confidence            567999999999999999999999999 9999998753     368999999999999999994  678999 8999998


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        78 ~~~~   81 (167)
T 2cjk_A           78 AIPR   81 (167)
T ss_dssp             CCCH
T ss_pred             ccch
Confidence            8764

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.60  E-value=1e-15  Score=108.99  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc----cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF----PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~----~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++++|||+|||..+|+++|+++|++|| .+..+.+.    ..++|+|||+|.+.++|.+|++ |||..+.| +.|+|.++
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g-~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~v~~~   88 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEKP   88 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHH-HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT-EEEEEECC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC-eEEEEecC
Confidence            578999999999999999999999999 65442221    1468999999999999999995 99999999 89999999


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +..
T Consensus        89 ~~~   91 (175)
T 1fje_B           89 KGR   91 (175)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            864

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=103.39  Aligned_cols=60  Identities=17%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |+++|++||+|.+|.+..  .++|||||+|.+.++|..|++.|||..+.|++|+|.|++...
T Consensus        50 L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~  111 (127)
T 2a3j_A           50 LYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ  111 (127)
T ss_dssp             HHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred             HHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence            467999999999998876  478999999999999999999999999999999999998543

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.59  E-value=9.5e-16  Score=102.14  Aligned_cols=83  Identities=17%  Similarity=0.312  Sum_probs=71.5

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT   78 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      |.++|++||.|.+|.++.  .++|+|||+|.+.++|..|++.|||..+.|++|.|.+++.....                
T Consensus        25 l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~----------------   88 (115)
T 3lqv_A           25 MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF----------------   88 (115)
T ss_dssp             HHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------
T ss_pred             HHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------
Confidence            568999999999999876  46799999999999999999999999999999999998732210                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Q psy17274         79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGF  126 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~  126 (184)
                                                 .+++...++++|..+|++||.
T Consensus        89 ---------------------------~~~~~~~~~~~l~~~~~~~g~  109 (115)
T 3lqv_A           89 ---------------------------QKMDTKKKEEQLKLLKEKYGI  109 (115)
T ss_dssp             ---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred             ---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence                                       246677889999999999993

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.58  E-value=7.5e-16  Score=100.95  Aligned_cols=69  Identities=16%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             EeCCCCCCCHHHHHHHH------------HhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274        105 LSNIPASVTEDELKEAF------------TEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus       105 v~nlp~~~t~~~l~~~F------------~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      +.|||..+++++|+++|            ++|| .|.+|.|..+    ++|+|||+|.+.++|.+|+..|||+.++| |+
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G-~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G-r~   97 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG-QP   97 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT-EE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC-EE
Confidence            34566666777776666            9999 9999999863    37999999999999999999999999999 89


Q ss_pred             EEEEecC
Q psy17274        169 LRVSFSK  175 (184)
Q Consensus       169 l~v~~~~  175 (184)
                      |+|.|+.
T Consensus        98 i~v~~sp  104 (104)
T 1jmt_A           98 IHAELSP  104 (104)
T ss_dssp             CCEEECC
T ss_pred             EEEEEcC
Confidence            9999974

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.57  E-value=3.6e-15  Score=98.67  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|++|++.|||..+.|++|.|+++...
T Consensus        23 L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A           23 LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            568999999999999986     35799999999999999999999999999999999998643

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=7.1e-15  Score=94.84  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEeeC--CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN--KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |+++|++||+|.+|+++..  .+|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        30 l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   90 (96)
T 2dgx_A           30 LQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA   90 (96)
T ss_dssp             HHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred             HHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            3589999999999999862  3899999999999999999999999999999999999743

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=93.26  Aligned_cols=55  Identities=24%  Similarity=0.362  Sum_probs=49.9

Q ss_pred             ChhhhccC-CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVY-GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~y-G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |+++|++| |+|.+|.     .|+|||+|.+.++|++|++.|||..++||+|+|.|++...
T Consensus        30 L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s   85 (96)
T 2diu_A           30 LRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR   85 (96)
T ss_dssp             HHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred             HHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence            57899999 5999982     3999999999999999999999999999999999998543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=7.7e-15  Score=95.59  Aligned_cols=57  Identities=32%  Similarity=0.440  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|++++ .+|||||+|.+.++|..|++.||+.  .+.|++|+|.+++.
T Consensus        33 L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   91 (102)
T 1x4d_A           33 LLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   91 (102)
T ss_dssp             HHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             HHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence            568999999999999876 5699999999999999999999875  59999999999984

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=1.2e-14  Score=95.19  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|.+++ .+|||||+|.+.++|..|++.|++.  .+.|++|+|+|++.+..
T Consensus        32 L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~   93 (104)
T 1wex_A           32 LVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI   93 (104)
T ss_dssp             HHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred             HHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence            568999999999999876 5899999999999999999998765  48999999999986554

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=3.8e-15  Score=97.30  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=53.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|++++ .+|||||+|.+.++|..|++.|++  ..+.|++|+|.+++.+..
T Consensus        33 L~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~   94 (105)
T 1sjq_A           33 VISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL   94 (105)
T ss_dssp             HHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred             HHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence            568999999999999886 589999999999999999998864  789999999999985544

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.54  E-value=1.2e-14  Score=95.30  Aligned_cols=58  Identities=12%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|.++.      .++|+|||+|.++++|.+|++.|||..|.||+|.|.++..
T Consensus        30 l~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           30 TKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL   93 (105)
T ss_dssp             HHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             HHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence            467899999999999986      2479999999999999999999999999999999999864

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=3.8e-14  Score=92.25  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh--CCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM--DKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|.+++ .+|||||+|.+.++|..|++.|  ++..+.|++|.|.|++....
T Consensus        32 L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~   93 (101)
T 2cq1_A           32 VIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL   93 (101)
T ss_dssp             HHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred             HHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence            568999999999998775 5899999999999999999977  46789999999999986554

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.53  E-value=1e-14  Score=91.79  Aligned_cols=57  Identities=21%  Similarity=0.437  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus        24 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           24 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            5689999999999998762     58999999999999999999999999999999999875

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.1e-14  Score=93.72  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        32 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (103)
T 2cq0_A           32 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST   96 (103)
T ss_dssp             HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence            5689999999999999873     46899999999999999999999999999999999998543

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=1.1e-14  Score=96.37  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee-----cCcEEEEEEccCcccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV-----FGKQMRVMISKHQAVQ   62 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-----~g~~l~v~~s~~~~~~   62 (184)
                      |.++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+     .|++|.|.|++.-...
T Consensus        44 L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~  109 (114)
T 2cq2_A           44 LLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS  109 (114)
T ss_dssp             HHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred             HHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence            568999999999998754 689999999999999999999999998     6899999999854443

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=3.2e-14  Score=92.85  Aligned_cols=60  Identities=17%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++.   .++|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2cqi_A           32 ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS   94 (103)
T ss_dssp             HHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred             HHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence            578999999999999987   367999999999999999999999999999999999998543

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=5.9e-14  Score=91.55  Aligned_cols=61  Identities=21%  Similarity=0.382  Sum_probs=55.2

Q ss_pred             ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++..   ++|+|||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus        32 l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   95 (103)
T 2cq3_A           32 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM   95 (103)
T ss_dssp             HHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence            5689999999999999873   489999999999999999999999999999999999985443

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.52  E-value=4.4e-14  Score=91.49  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        25 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (99)
T 1whw_A           25 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence            568999999999999876     257999999999999999999999999999999999998543

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.52  E-value=1.4e-14  Score=95.70  Aligned_cols=59  Identities=24%  Similarity=0.333  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|++++ ++|||||+|.+.++|..|++.|++  ..+.|++|+|.+++...
T Consensus        43 L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~  103 (112)
T 1x4f_A           43 VLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK  103 (112)
T ss_dssp             HHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred             HHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence            568999999999999875 689999999999999999998865  56899999999997443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=91.62  Aligned_cols=57  Identities=21%  Similarity=0.466  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|+++..     ++|+|||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus        33 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           33 LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence            5689999999999998862     57999999999999999999999999999999999975

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=5.6e-14  Score=90.73  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|.+. .++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        30 l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~   88 (97)
T 1x5p_A           30 LRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP   88 (97)
T ss_dssp             HHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred             HHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            56899999999999975 578999999999999999999999999999999999987443

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.52  E-value=2.2e-14  Score=89.81  Aligned_cols=58  Identities=12%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++..     ++|+|||+|.+.++|+.|++.|||..+.|++|+|++++.
T Consensus        18 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A           18 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            4689999999999998863     379999999999999999999999999999999999874

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.52  E-value=2.2e-14  Score=90.65  Aligned_cols=58  Identities=14%  Similarity=0.248  Sum_probs=53.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|+.|++.|||..+.|++|+|++++.
T Consensus        23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   85 (87)
T 3bs9_A           23 IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   85 (87)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred             HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence            4689999999999999873     478999999999999999999999999999999999874

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.52  E-value=1.9e-14  Score=94.37  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+|++.       ++|+|||+|.++++|.+|++.|||..|.||+|.|.++..
T Consensus        32 l~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           32 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence            4678999999999998862       479999999999999999999999999999999998753

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.52  E-value=1.8e-14  Score=95.68  Aligned_cols=58  Identities=12%  Similarity=0.102  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.+.|++||.|.+|.+.+. .+|+|||+|.+.++|.+|++.|||..|.||+|.|.|+..
T Consensus        34 l~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~   92 (114)
T 3s6e_A           34 VIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL   92 (114)
T ss_dssp             HHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence            4678999999999998774 589999999999999999999999999999999999863

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.5e-14  Score=92.14  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=51.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|.++..++|||||+|.+.++|..|++.+++  +.|++|+|.|++..
T Consensus        34 L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           34 LLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ   90 (100)
T ss_dssp             HHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred             HHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence            5689999999999999888899999999999999999998655  67999999998744

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.51  E-value=1.3e-14  Score=94.36  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=53.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC-cEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG-KQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|++|++.|||..+.| ++|+|.++..
T Consensus        29 L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~   92 (100)
T 3ns6_A           29 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD   92 (100)
T ss_dssp             HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred             HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence            468999999999999886     357999999999999999999999999999 9999999863

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7.1e-14  Score=89.75  Aligned_cols=59  Identities=17%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        22 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   85 (95)
T 2dnz_A           22 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER   85 (95)
T ss_dssp             HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred             HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence            5689999999999999873     5799999999999999999999999999999999999743

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.51  E-value=3.1e-14  Score=91.76  Aligned_cols=61  Identities=15%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus        19 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   84 (96)
T 2x1f_A           19 ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI   84 (96)
T ss_dssp             HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence            5689999999999998863     479999999999999999999999999999999999985543

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2.1e-14  Score=95.93  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++. .+|||||+|.+.++|..|++.|++  ..+.|++|+|.+++....
T Consensus        48 L~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~  109 (119)
T 2ad9_A           48 VISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL  109 (119)
T ss_dssp             HHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred             HHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence            568999999999999886 479999999999999999999984  689999999999986554

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.51  E-value=1.5e-14  Score=94.73  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             hhhh-ccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          2 FSLT-GVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         2 ~~lF-~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      .+.| ++||+|.+|++++.    ++|+|||+|.++++|.+|++.|||..+.|++|.|+|+
T Consensus        44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            4567 99999999999873    4899999999999999999999999999999999986

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.50  E-value=4.7e-14  Score=93.38  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=52.5

Q ss_pred             hhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          2 FSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      .++|++||+|.+|+++..        ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        36 ~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k  101 (111)
T 2cpi_A           36 PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTK  101 (111)
T ss_dssp             TTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCC
T ss_pred             HHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccc
Confidence            489999999999999862        2389999999999999999999999999999999998743

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=3.4e-14  Score=92.49  Aligned_cols=60  Identities=20%  Similarity=0.401  Sum_probs=54.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   93 (102)
T 2cqb_A           29 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR   93 (102)
T ss_dssp             HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence            5689999999999998763     68999999999999999999999999999999999998544

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.50  E-value=7.9e-14  Score=93.03  Aligned_cols=60  Identities=20%  Similarity=0.303  Sum_probs=54.7

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|.++..    ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        24 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   87 (116)
T 2fy1_A           24 LKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS   87 (116)
T ss_dssp             HHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            4689999999999999873    57999999999999999999999999999999999998544

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=7.1e-14  Score=88.97  Aligned_cols=57  Identities=25%  Similarity=0.444  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++   +|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus        25 l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   81 (90)
T 2dnq_A           25 IRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS   81 (90)
T ss_dssp             HHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred             HHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence            56899999999999986   6999999999999999999999999999999999987443

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=6.3e-14  Score=92.37  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|++..  .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        39 l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           39 IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             HHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            578999999999999876  35799999999999999999999999999999999998743

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=3e-14  Score=94.05  Aligned_cols=59  Identities=20%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.   .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        46 l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  107 (109)
T 2err_A           46 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR  107 (109)
T ss_dssp             HHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            568999999999999886   35899999999999999999999999999999999998743

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4.2e-14  Score=91.01  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             ChhhhccCCCeeEE-EEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRV-KILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v-~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+| +++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        22 l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   87 (96)
T 1x5t_A           22 LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD   87 (96)
T ss_dssp             HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred             HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence            56899999999999 88763     57999999999999999999999999999999999997443

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.50  E-value=2.1e-14  Score=92.64  Aligned_cols=59  Identities=19%  Similarity=0.371  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |+++|++||.|.+|.+..  .++|+|||+|.+.++|..|++.|||..+.|++|.|++++..
T Consensus        29 l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (97)
T 1nu4_A           29 LHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   89 (97)
T ss_dssp             HHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             HHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence            458999999999999875  46799999999999999999999999999999999999844

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-14  Score=93.26  Aligned_cols=58  Identities=17%  Similarity=0.357  Sum_probs=51.3

Q ss_pred             ChhhhccCCC--eeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCc----eecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGD--VLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKL----RVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~--V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.  |.+|++++     .++|||||+|.+.++|++|++.|||.    .+.|++|.|+|++.
T Consensus        26 L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           26 IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            5689999995  67898876     36899999999999999999999997    47899999999974

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.50  E-value=4.4e-14  Score=92.45  Aligned_cols=61  Identities=13%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecC---cEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFG---KQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++..    ++|||||+|.+.++|++|++.|||..+.|   ++|.|.+++....
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           32 VLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             HHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence            5689999999999999873    37999999999999999999999999998   9999999985443

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=4.1e-14  Score=93.69  Aligned_cols=59  Identities=14%  Similarity=0.123  Sum_probs=54.0

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|.+.. ++|+|||+|.+.++|+.|++.|||..+.|++|.|+|++...
T Consensus        27 L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   85 (111)
T 1whx_A           27 IQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             HHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             HHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence            568999999999998764 78999999999999999999999999999999999997543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=4.6e-14  Score=91.19  Aligned_cols=60  Identities=17%  Similarity=0.225  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..        ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        22 l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (98)
T 2cpf_A           22 LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT   89 (98)
T ss_dssp             HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence            5689999999999998862        35899999999999999999999999999999999987543

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=4.6e-14  Score=91.08  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec--CcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|++... +|||||+|.+.++|++|++.|||..+.  |++|+|++++.
T Consensus        34 l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~   92 (97)
T 1why_A           34 LAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             HHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             HHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence            5689999999999998764 799999999999999999999999999  99999999974

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.49  E-value=6.7e-14  Score=90.43  Aligned_cols=55  Identities=22%  Similarity=0.418  Sum_probs=51.5

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|++   ++|||||+|.+.++|.+|++.|||..+.|++|.|++++.
T Consensus        40 L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   94 (97)
T 2xnq_A           40 LFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS   94 (97)
T ss_dssp             HHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred             HHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence            5689999999999998   479999999999999999999999999999999999874

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.49  E-value=6.9e-15  Score=94.03  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             ChhhhccCC-CeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhC-CceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYG-DVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMD-KLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG-~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++|| .|.+|++++     .++|||||+|.+.++|++|++.++ +..+.|++|+|+|++.
T Consensus        18 l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~   82 (91)
T 2lxi_A           18 IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP   82 (91)
T ss_dssp             HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred             HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence            568999999 899999876     368999999999999999999875 5679999999999874

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4.5e-14  Score=92.11  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|.++.     .++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        30 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2dnm_A           30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR   94 (103)
T ss_dssp             HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence            568999999999999876     257999999999999999999999999999999999998543

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=6.9e-14  Score=92.22  Aligned_cols=59  Identities=12%  Similarity=0.312  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++.. +|||||+|.+.++|.+|++.|||..+.|++|.|.+++...
T Consensus        42 l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  100 (109)
T 1x4g_A           42 MRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP  100 (109)
T ss_dssp             HHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred             HHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence            5689999999999998764 8999999999999999999999999999999999998543

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=3.8e-14  Score=90.99  Aligned_cols=57  Identities=19%  Similarity=0.341  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|++.|||..+.|++|.|++++
T Consensus        32 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           32 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            5689999999999999862     46899999999999999999999999999999999986

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=89.19  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=51.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|++++ ++|+|||+|.+.++|..|++.| +|..+.|++|+|+|++
T Consensus        29 l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           29 LRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             HHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred             HHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence            468999999999999876 5799999999999999999989 9999999999999975

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=4e-14  Score=91.72  Aligned_cols=59  Identities=31%  Similarity=0.387  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|++.+ .+|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        32 l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           32 MRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   90 (99)
T ss_dssp             HHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             HHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence            578999999999999875 58999999999999999999999999999999999998543

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=1.1e-13  Score=91.67  Aligned_cols=58  Identities=10%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|.+.. .++|+|||+|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus        43 l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           43 LRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG  101 (112)
T ss_dssp             HHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred             HHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            467999999999997643 4689999999999999999999999999999999999874

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.5e-14  Score=91.06  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=54.6

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++.   .++|||||+|.+.++|+.|++.|||..+.|++|.|.+++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2d9p_A           32 LRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE   94 (103)
T ss_dssp             HHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred             HHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence            568999999999999886   357999999999999999999999999999999999998543

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.48  E-value=7e-15  Score=93.74  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             ChhhhccCC--CeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYG--DVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG--~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||  .|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|+|.++...
T Consensus        18 l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~   83 (90)
T 3p5t_L           18 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL   83 (90)
T ss_dssp             HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred             HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence            468999999  9999998872     4789999999999999999999999999999999988743

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=89.31  Aligned_cols=58  Identities=17%  Similarity=0.318  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++ |||..+.|++|.|++++..
T Consensus        27 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           27 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred             HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence            5689999999999999862     58999999999999999998 9999999999999999744

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.48  E-value=5.1e-14  Score=93.70  Aligned_cols=60  Identities=15%  Similarity=0.333  Sum_probs=54.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus        42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~  106 (115)
T 2cpz_A           42 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN  106 (115)
T ss_dssp             HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            5689999999999999873     35899999999999999999999999999999999987543

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.48  E-value=5.9e-14  Score=88.79  Aligned_cols=58  Identities=17%  Similarity=0.334  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..      ++|+|||+|.+.++|++|++.|||..+.|++|.|+++..
T Consensus        21 l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   84 (88)
T 4a8x_A           21 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA   84 (88)
T ss_dssp             HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence            4689999999999998762      689999999999999999999999999999999999863

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=9.3e-14  Score=91.15  Aligned_cols=60  Identities=10%  Similarity=0.308  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..      ++|||||+|.+.++|++|++.| ||..+.|++|.|++++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~   98 (107)
T 2cph_A           32 IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   98 (107)
T ss_dssp             HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence            5689999999999998764      4899999999999999999999 9999999999999998543

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.48  E-value=3.5e-14  Score=91.18  Aligned_cols=57  Identities=16%  Similarity=0.314  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|+++..    ++|+|||+|.+.++|.+|++.|||..+.|++|.|++++
T Consensus        33 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           33 LYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            5689999999999999873    36899999999999999999999999999999999886

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=6.1e-14  Score=90.99  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..    ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus        34 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           34 LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             HHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             HHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            5689999999999999873    369999999999999999999999999999999999874

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.48  E-value=3.6e-14  Score=93.04  Aligned_cols=57  Identities=14%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCc-EEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGK-QMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~s~   57 (184)
                      |.++|++||.|.+|++++   .++|||||+|.+.++|.+|++.|||..+.|+ +|.|.++.
T Consensus        38 l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           38 IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFT   98 (105)
T ss_dssp             HHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred             HHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence            467999999999999875   3689999999999999999999999999999 99999886

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=5.3e-14  Score=91.56  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|++.|||..+.|++|+|++++...
T Consensus        29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   93 (102)
T 1x5s_A           29 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS   93 (102)
T ss_dssp             HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            5689999999999999872     57999999999999999999999999999999999997443

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=8.3e-14  Score=91.12  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=54.4

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (105)
T 1x5u_A           32 LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN   96 (105)
T ss_dssp             HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            5689999999999998772     57999999999999999999999999999999999997543

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.48  E-value=3.5e-14  Score=93.95  Aligned_cols=58  Identities=7%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             ChhhhccCC-CeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYG-DVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG-~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++|| .|..+++.. .++|||||+|.+.++|++|++.|||..+.|++|+|++++.
T Consensus        45 L~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           45 LKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             HHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             HHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            568999999 999999863 5789999999999999999999999999999999999873

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=87.35  Aligned_cols=57  Identities=28%  Similarity=0.412  Sum_probs=52.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++   ++||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus        27 l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   83 (92)
T 2dgt_A           27 LRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL   83 (92)
T ss_dssp             HHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred             HHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence            46899999999999985   5799999999999999999999999999999999997543

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=2.4e-13  Score=85.38  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=63.1

Q ss_pred             CCCCEEEEeCCC----CCCCH----HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274         98 PPSPTLHLSNIP----ASVTE----DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL  169 (184)
Q Consensus        98 ~~~~~l~v~nlp----~~~t~----~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l  169 (184)
                      ||..||.|.-.|    .+.-+    .+|.+.|++|| .|..+++.. +  .+||+|.+.++|.+|++ |||..+.| |.|
T Consensus         5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~-d--~~fVtF~d~~sAlaAi~-mnG~~v~G-r~L   78 (91)
T 2dnr_A            5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE-D--KMWVTFLEGSSALNVLS-LNGKELLN-RTI   78 (91)
T ss_dssp             CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS-S--SEEEEESSHHHHHHGGG-GTTCEETT-EEE
T ss_pred             CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec-C--CEEEEECChHHHHHHHh-cCCeEeCC-eEE
Confidence            477888888766    23333    67899999999 999999985 3  39999999999999999 99999999 999


Q ss_pred             EEEecCcc
Q psy17274        170 RVSFSKSN  177 (184)
Q Consensus       170 ~v~~~~~~  177 (184)
                      +|.++++.
T Consensus        79 kV~lkt~d   86 (91)
T 2dnr_A           79 TIALKSPS   86 (91)
T ss_dssp             EEEECCCS
T ss_pred             EEEeCCCC
Confidence            99998865

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=5.8e-14  Score=90.49  Aligned_cols=57  Identities=21%  Similarity=0.388  Sum_probs=52.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|.+.   +|||||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus        28 l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   84 (96)
T 2kvi_A           28 LFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA   84 (96)
T ss_dssp             HHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred             HHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence            56899999999999984   7999999999999999999999999999999999997543

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.47  E-value=4.9e-14  Score=92.89  Aligned_cols=58  Identities=16%  Similarity=0.344  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus        43 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  105 (108)
T 2jrs_A           43 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE  105 (108)
T ss_dssp             HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred             HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence            4689999999999999862     468999999999999999999999999999999999874

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.47  E-value=2.8e-13  Score=90.07  Aligned_cols=60  Identities=13%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|+|.+++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   96 (115)
T 2dgo_A           32 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP   96 (115)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence            5689999999999999873     36899999999999999999999999999999999997543

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.46  E-value=6.3e-14  Score=97.57  Aligned_cols=58  Identities=22%  Similarity=0.300  Sum_probs=54.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..++|||||+|.+.++|..|++.|||..+.|++|+|++++.
T Consensus        90 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A           90 LERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             HHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             HHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            5689999999999999887799999999999999999999999999999999999874

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=4.6e-14  Score=91.73  Aligned_cols=57  Identities=19%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus        44 l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  100 (101)
T 2la4_A           44 LIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE  100 (101)
T ss_dssp             HHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred             HHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence            46899999999999987 4789999999999999999999999999999999998873

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.46  E-value=9.8e-14  Score=91.42  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=52.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++   +|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        48 L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  103 (108)
T 2jvo_A           48 LNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP  103 (108)
T ss_dssp             HHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred             HHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence            56899999999999987   799999999999999999999999999999999998743

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=5.8e-14  Score=92.01  Aligned_cols=58  Identities=16%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus        40 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           40 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            5689999999999999862     369999999999999999999999999999999999874

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.46  E-value=3e-13  Score=89.04  Aligned_cols=57  Identities=12%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecC-----cEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFG-----KQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++..  |||||+|.+.++|++||+.|||..+.|     ++|.|++++..
T Consensus        32 l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~   93 (108)
T 1x4c_A           32 LKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR   93 (108)
T ss_dssp             HHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred             HHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence            5689999999999998765  999999999999999999999999999     99999998743

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.46  E-value=6.4e-14  Score=93.60  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus        57 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           57 LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred             HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            568999999999999986     248999999999999999999999999999999999875

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.46  E-value=3e-14  Score=88.94  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCc-EEEE
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGK-QMRV   53 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v   53 (184)
                      |.++|++||+|.+|++.+   .++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus        24 l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A           24 IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             HHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             HHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            467999999999999875   3689999999999999999999999999999 8876

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.45  E-value=5.3e-14  Score=89.84  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..   ++|+|||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        25 l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   86 (92)
T 2dgv_A           25 LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA   86 (92)
T ss_dssp             HHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred             HHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            5689999999999998872   5799999999999999999999999999999999999743

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.45  E-value=8.7e-14  Score=92.98  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             ChhhhccCCCeeEEEEeeC---------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN---------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.+.|++||+|.+|+|.+.         ++|+|||+|.++++|.+|++.|||..|.||+|.|.|+..
T Consensus        42 l~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~  108 (118)
T 3ue2_A           42 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  108 (118)
T ss_dssp             HHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence            4678999999999999873         238999999999999999999999999999999999753

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.45  E-value=1e-13  Score=91.43  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|..|++.|||..+.|++|.|++++.
T Consensus        43 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           43 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            5689999999999998762     479999999999999999999999999999999999874

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.45  E-value=1.1e-13  Score=90.88  Aligned_cols=57  Identities=16%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..    ++|+|||+|.+.++|++|++.|||..+.|++|.|+++.
T Consensus        46 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           46 IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             HHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            5689999999999998863    47899999999999999999999999999999999985

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.45  E-value=8.3e-14  Score=90.22  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             ChhhhccCCCeeE--------EEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLR--------VKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~--------v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+        |+++..     ++|+|||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus        30 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~   99 (99)
T 2la6_A           30 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT   99 (99)
T ss_dssp             HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence            4689999999999        988863     36899999999999999999999999999999999874

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.45  E-value=1.2e-13  Score=93.94  Aligned_cols=58  Identities=21%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.     ..+|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus        63 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           63 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            568999999999999986     3689999999999999999999999999999999999874

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.45  E-value=1.3e-13  Score=90.99  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=52.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|++   ++|||||+|.+.++|+.|++.|||..+.|++|.|++++..
T Consensus        45 l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~  100 (110)
T 1wf1_A           45 VETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP  100 (110)
T ss_dssp             HHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred             HHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            5689999999999998   5799999999999999999999999999999999999743

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=8.9e-14  Score=90.77  Aligned_cols=59  Identities=17%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        25 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           25 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence            5689999999999999863     3799999999999999999999999999999999998744

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.44  E-value=3.1e-13  Score=91.06  Aligned_cols=61  Identities=16%  Similarity=0.249  Sum_probs=55.3

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++..    ++|+|||+|.+.++|.+|++.|||..+.|++|+|+++.....
T Consensus        52 l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  116 (124)
T 2kt5_A           52 IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID  116 (124)
T ss_dssp             HHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred             HHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence            4689999999999999873    689999999999999999999999999999999999985444

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.44  E-value=1.8e-13  Score=86.74  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=52.4

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|+ .|||..+.|++|.|++++.
T Consensus        23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A           23 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred             HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence            4689999999999998863     4899999999999999999 9999999999999999874

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.44  E-value=2e-13  Score=93.79  Aligned_cols=60  Identities=17%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|+.||.|.+|+++..     ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++...
T Consensus        59 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  123 (139)
T 1u6f_A           59 LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH  123 (139)
T ss_dssp             HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred             HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            5689999999999999863     37899999999999999999999999999999999998543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.44  E-value=3.8e-13  Score=87.74  Aligned_cols=58  Identities=28%  Similarity=0.353  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|+++   ++||||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus        28 l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   85 (103)
T 2dgu_A           28 LEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ   85 (103)
T ss_dssp             HHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             HHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence            56899999999999985   58999999999999999999999999999999999975443

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=3.7e-13  Score=88.81  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhC------CceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMD------KLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|.+|++.||      |..+.|++|.|.+++..
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           32 LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR  101 (111)
T ss_dssp             HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence            568999999999999885     258999999999999999999999      99999999999998744

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.2e-13  Score=85.86  Aligned_cols=56  Identities=27%  Similarity=0.403  Sum_probs=51.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++   +++|||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        26 l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A           26 LRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             HHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             HHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            56899999999999986   579999999999999999999999999999999999744

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=1.3e-12  Score=87.06  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCC-HHHHHHHHHHh--cCeecCCCCeEEEEe
Q psy17274         98 PPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS-IEEAITALIQM--HNHQLSEQSHLRVSF  173 (184)
Q Consensus        98 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~-~~~A~~Ai~~l--ng~~i~g~~~l~v~~  173 (184)
                      +++.+|+|+||++. +++++|+++|++|| .|..|.+.. +...|||+|.+ .++|..|+..|  +|..|.| ..+++..
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G-~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g-~~~~~ev   92 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHG-EIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRN-KEVTWEV   92 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSC-CEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS-SSEEEEE
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcC-CEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeC-cEEEEEE
Confidence            37889999999999 99999999999999 999999875 66789999999 89999999999  4889999 6888876


Q ss_pred             cC
Q psy17274        174 SK  175 (184)
Q Consensus       174 ~~  175 (184)
                      ..
T Consensus        93 L~   94 (121)
T 1owx_A           93 LE   94 (121)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=1.7e-13  Score=89.50  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|.++.    .++|||||+|.+.++|..|++ ++|..+.|++|.|.++..
T Consensus        28 L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           28 IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             HHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred             HHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence            468999999999999986    368999999999999999998 899999999999998753

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.42  E-value=4.2e-13  Score=90.39  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=52.7

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|+ .|||..+.|++|.|++++..
T Consensus        53 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~  115 (124)
T 2jwn_A           53 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN  115 (124)
T ss_dssp             HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence            5689999999999998862     4799999999999999999 89999999999999998743

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=6.8e-13  Score=85.84  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=51.4

Q ss_pred             ChhhhccC--CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVY--GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~y--G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++|  |.|.+|++   .+|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        32 l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpd_A           32 IEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV   89 (99)
T ss_dssp             HHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred             HHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            56899999  99999987   4699999999999999999999999999999999999743

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.8e-13  Score=89.84  Aligned_cols=58  Identities=19%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..    ++|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus        32 l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           32 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             HHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            5689999999999998873    368999999999999999999999999999999999874

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=88.37  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|. +.++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus        36 l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           36 LKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             HHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             HHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            468999999997 55554 6789999999999999999999999999999999999874

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.41  E-value=2.9e-13  Score=88.65  Aligned_cols=59  Identities=15%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCcee---cCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRV---FGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|++.|||..+   .|++|.|.+++..
T Consensus        30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~   96 (106)
T 2dgp_A           30 LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE   96 (106)
T ss_dssp             HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred             HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence            5689999999999998872     579999999999999999999999988   8899999999744

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.41  E-value=2.1e-13  Score=92.13  Aligned_cols=60  Identities=15%  Similarity=0.262  Sum_probs=54.3

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+|.++..     ++|+|||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus        39 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  103 (126)
T 3ex7_B           39 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG  103 (126)
T ss_dssp             HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence            5689999999999998763     48999999999999999999999999999999999997443

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=7.1e-13  Score=88.24  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|++ .+.|++|.|++++..
T Consensus        34 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~   96 (116)
T 2cqd_A           34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG   96 (116)
T ss_dssp             HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred             HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence            5689999999999999872     579999999999999999999999 899999999999744

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.41  E-value=9.7e-14  Score=85.24  Aligned_cols=55  Identities=5%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+|+++..     ++|+|||+|.+.++|++|++ |||..+.|++|.|+++
T Consensus        16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           16 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence            4689999999999998762     47999999999999999997 9999999999999864

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=2.9e-13  Score=89.85  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus        42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~  104 (114)
T 2cq4_A           42 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE  104 (114)
T ss_dssp             HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred             HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence            568999999999999985     36799999999999999999 99999999999999998743

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.40  E-value=3.8e-13  Score=89.14  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             ChhhhccCCCee--------EEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVL--------RVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~--------~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.        .|+++..     ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        32 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  103 (113)
T 2cpe_A           32 LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK  103 (113)
T ss_dssp             HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence            568999999999        6888762     4799999999999999999999999999999999998743

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-13  Score=88.55  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             ChhhhccCCCee-EEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcE----EEEEEccCc
Q psy17274          1 MFSLTGVYGDVL-RVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQ----MRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~-~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~----l~v~~s~~~   59 (184)
                      |.++|++||.|. +|+++..     ++|||||+|.+.++|++|++.|||..+.|+.    |+|.|++..
T Consensus        26 l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           26 ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred             HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence            568999999999 9998873     4589999999999999999999999999999    999998743

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.40  E-value=1.1e-13  Score=89.40  Aligned_cols=58  Identities=9%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.++.++.     .++|+|||+|.+.++|++|++.|||..+.|++|+|++++.
T Consensus        32 l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            468999999998776665     2479999999999999999999999999999999999873

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.39  E-value=1e-13  Score=88.16  Aligned_cols=59  Identities=24%  Similarity=0.462  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|+++.     .++|+|||+|.+.+ |..|++.|||..+.|++|+|+++....
T Consensus        18 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~   81 (90)
T 2ki2_A           18 VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK   81 (90)
T ss_dssp             HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred             HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            467999999999999886     35899999999999 999999999999999999999987543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.39  E-value=5e-13  Score=93.69  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=54.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|.+|++.|||..+.|++|.|.+++..
T Consensus        87 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A           87 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            568999999999999876     26899999999999999999999999999999999999843

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.39  E-value=3.3e-13  Score=94.57  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             ChhhhccCC--CeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYG--DVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG--~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||  .|.+|+++.     .++|||||+|.+.++|++||+.|||..+.|++|.|.++...
T Consensus        72 L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~  137 (156)
T 3n9u_C           72 LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ  137 (156)
T ss_dssp             HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred             HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence            568999999  999999986     25789999999999999999999999999999999998643

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-13  Score=87.88  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++|| |.+|+++..      ++|+|||+|.+.++|.+|+ .|||..+.|++|+|++++.
T Consensus        36 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           36 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred             HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence            468999999 999998763      4799999999999999999 9999999999999999874

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=87.88  Aligned_cols=59  Identities=10%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             Chhhhcc-CCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCce-ecCcEEEEEEccCc
Q psy17274          1 MFSLTGV-YGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLR-VFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~-yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l~v~~s~~~   59 (184)
                      |.++|++ ||.|.+|+++..    ++|||||+|.+.++|.+|++.|||.. +.|++|.|++++..
T Consensus        26 l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~   90 (104)
T 2dhg_A           26 LYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK   90 (104)
T ss_dssp             HHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred             HHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence            5689999 999999999873    57999999999999999999999999 99999999998643

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=91.94  Aligned_cols=56  Identities=20%  Similarity=0.426  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus        80 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           80 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            5689999999999998762     5899999999999999999999999999999999875

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.38  E-value=1.5e-13  Score=88.24  Aligned_cols=57  Identities=9%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.++.++.     .++|+|||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus        32 l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            468999999999887776     247999999999999999999999999999999999875

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=6e-13  Score=86.88  Aligned_cols=57  Identities=11%  Similarity=0.131  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++|| |.+|+++..      ++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus        32 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           32 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence            568999999 999998862      3799999999999999999 99999999999999998743

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=1.1e-13  Score=87.13  Aligned_cols=57  Identities=14%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|+.|++.+++
T Consensus        22 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A           22 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            4689999999999998862     48999999999999999999999999999998876554

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=4.8e-13  Score=85.55  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             ChhhhccCCC-eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGD-VLRVKILYNKKDSALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~-V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||. |..+.+.  ++|||||+|.+.++|++|++.||| ..+.|++|+|++++..
T Consensus        25 l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A           25 LRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             HHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence            4689999999 6666653  579999999999999999999999 9999999999999743

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=6.5e-13  Score=88.24  Aligned_cols=60  Identities=15%  Similarity=0.355  Sum_probs=52.6

Q ss_pred             ChhhhccCCCe----eEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDV----LRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V----~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|    ..+++.. .++|||||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus        42 l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~  106 (115)
T 2cpx_A           42 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK  106 (115)
T ss_dssp             HHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred             HHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence            56899999999    5666554 468999999999999999999999999999999999998544

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.37  E-value=7e-13  Score=92.82  Aligned_cols=59  Identities=14%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        56 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  119 (156)
T 1h2v_Z           56 IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF  119 (156)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            5689999999999999873     4689999999999999999999999999999999999753

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.37  E-value=4.5e-13  Score=91.69  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~  127 (135)
T 2lea_A           64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG  127 (135)
T ss_dssp             HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred             HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            568999999999999876     35799999999999999999999999999999999999843

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=1.7e-12  Score=81.83  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             CCCCEEEEeCCCCC-----CCH----HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274         98 PPSPTLHLSNIPAS-----VTE----DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus        98 ~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      ||..||.|.-++++     .-+    .+|.+.|++|| .|..+++.. ++  +||+|.+.++|.+||+ |||..++| |.
T Consensus        13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~-d~--~fVtF~d~~sAl~AI~-ldG~~v~G-r~   86 (95)
T 1ufw_A           13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQ-GQ--MLVTFADSHSALSVLD-VDGMKVKG-RA   86 (95)
T ss_dssp             CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEET-TE--EEEECSCSHHHHHHHH-GGGSEETT-EE
T ss_pred             CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEec-Cc--EEEEEcChHHHHHHHh-cCCeeeCC-eE
Confidence            47889999988743     222    56899999999 999999885 33  9999999999999999 99999999 99


Q ss_pred             EEEEecCc
Q psy17274        169 LRVSFSKS  176 (184)
Q Consensus       169 l~v~~~~~  176 (184)
                      |+|++..+
T Consensus        87 L~V~~k~~   94 (95)
T 1ufw_A           87 VKISGPSS   94 (95)
T ss_dssp             EEEECCCC
T ss_pred             EEEeccCC
Confidence            99998654

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=1.2e-12  Score=85.25  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++|| |.+|+++..     ++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus        32 l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dng_A           32 IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR   93 (103)
T ss_dssp             HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred             HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence            568999997 999999873     3689999999999999999 99999999999999998743

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5e-13  Score=87.40  Aligned_cols=59  Identities=10%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|+++..     ++|||||+|.+.++|++|++. +|..+.|++|.|++++...
T Consensus        33 l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~   96 (105)
T 2dh8_A           33 LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG   96 (105)
T ss_dssp             HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred             HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence            5689999999999999873     368999999999999999988 9999999999999887443

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.36  E-value=7.9e-13  Score=83.74  Aligned_cols=58  Identities=21%  Similarity=0.285  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++| .|.+|++. .++|+|||+|.+.++|++|++.|||..+.|++|+|+++....
T Consensus        22 l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           22 VHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             HHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             HHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            46899999 99999985 578999999999999999999999999999999999987543

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.36  E-value=4.5e-13  Score=82.56  Aligned_cols=55  Identities=7%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+|.++..     ++|+|||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus        17 l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A           17 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            4689999999999998863     47999999999999999999999 9999999999876

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=1.6e-12  Score=86.53  Aligned_cols=58  Identities=7%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++. +|..+.|++|.|++++..
T Consensus        44 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           44 LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence            5689999999999999872     579999999999999999987 999999999999998744

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.36  E-value=7.4e-13  Score=98.59  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee------------cCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV------------FGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~------------~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|+++. ++|+|||+|.+.++|+.|++.|+|..+            .|+.|.|.|++...
T Consensus       160 L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p  230 (240)
T 3u1l_A          160 IRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP  230 (240)
T ss_dssp             HHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred             HHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence            568999999999999886 679999999999999999999999999            89999999998544

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=1.1e-12  Score=87.08  Aligned_cols=57  Identities=12%  Similarity=0.258  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCcee--------cCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRV--------FGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~--------~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..    ++|||||+|.+.++|++|++.|||..+        .|++|.|.|+.
T Consensus        42 l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           42 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             HHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred             HHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence            4689999999999999873    468999999999999999999999999        57889999987

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.35  E-value=7.9e-13  Score=93.46  Aligned_cols=59  Identities=17%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|.++..     ++|||||+|.+.++|..||+.|||..+.|++|.|.|+...
T Consensus        89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  152 (165)
T 1rk8_A           89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK  152 (165)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred             HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            5689999999999999873     4799999999999999999999999999999999998743

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.35  E-value=1.8e-12  Score=85.39  Aligned_cols=57  Identities=7%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|.+|++.+ |..+.|++|.|+++..
T Consensus        42 L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~  103 (109)
T 2rs2_A           42 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFP  103 (109)
T ss_dssp             HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred             HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence            5689999999999999862     5799999999999999999876 5999999999999873

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.35  E-value=1.1e-12  Score=82.78  Aligned_cols=55  Identities=11%  Similarity=0.199  Sum_probs=48.9

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||.|.+|+++..     ++|+|||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus        28 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           28 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred             HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence            5689999999999999863     47899999999999999995 5888999999999875

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=8.4e-13  Score=86.84  Aligned_cols=60  Identities=15%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             ChhhhccCCC-eeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhC--CceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGD-VLRVKILY------NKKDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~-V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||. |.+|.++.      .++|||||+|.+.++|..|++.|+  +..+.|++|.|++++...
T Consensus        25 l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~   93 (109)
T 2dis_A           25 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI   93 (109)
T ss_dssp             HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred             HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence            4689999999 99999872      468999999999999999999996  589999999999997543

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=83.69  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEE-Eee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVK-ILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~-~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+ ++. ...|.|||+|.+.++|..|++.|||..+.|++|.|++++..
T Consensus        32 l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           32 LDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             HHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             HHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            468999999999995 665 34566999999999999999999999999999999999754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.9e-12  Score=82.43  Aligned_cols=56  Identities=13%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++| .|.+|+++..    ++|+|||+|.+.++|++|++ |||..+.|++|.|.+++.
T Consensus        27 l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           27 VMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             HHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred             HHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence            46899999 9999999873    47899999999999999999 999999999999999874

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.33  E-value=1.9e-12  Score=86.14  Aligned_cols=55  Identities=13%  Similarity=0.262  Sum_probs=49.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-----EEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-----MRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-----l~v~~s~   57 (184)
                      |.++|++||+|.+|.++..  |||||+|.+.++|+.||+.|||..+.|++     |+|..+.
T Consensus        33 l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~   92 (115)
T 3beg_B           33 LKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG   92 (115)
T ss_dssp             HHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred             HHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence            5689999999999998754  99999999999999999999999999998     6666554

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.32  E-value=6.8e-13  Score=85.31  Aligned_cols=58  Identities=10%  Similarity=0.040  Sum_probs=50.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|..+.....++|+|||+|.+.++|..|++.|||..+.|++|.|++++.
T Consensus        33 l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           33 LKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             HHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             HHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            4689999999988822224689999999999999999999999999999999999874

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4e-12  Score=82.42  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|   +++.    .++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus        32 l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           32 LQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             HHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             HHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            56899999988   3333    36899999999999999999999999999999999999754

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.31  E-value=7.1e-13  Score=90.21  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             ChhhhccCCCeeE--EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCc----eecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLR--VKILY-----NKKDSALIQMAESHQAHLAMMHMDKL----RVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~--v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|..  |+++.     .++|||||+|.+. +|.+|++.|||.    .+.|++|.|++++...
T Consensus        40 L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~  109 (131)
T 2m2b_A           40 ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK  109 (131)
T ss_dssp             HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred             HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence            5689999999976  88887     2589999999999 999999999999    9999999999997543

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.9e-12  Score=81.46  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+| ++.. ...||||+|.+.++|+.|++ |||..+.|++|.|+++..
T Consensus        25 l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           25 LSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             HHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred             HHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence            46899999999998 3332 22299999999999999999 999999999999987753

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.30  E-value=3.2e-12  Score=91.38  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=55.1

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|.+..    .++|+|||+|.+.++|..|++.|||..+.|++|.|+++.....
T Consensus       105 L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~  169 (177)
T 2f3j_A          105 IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID  169 (177)
T ss_dssp             HHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred             HHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            468999999999999876    3579999999999999999999999999999999999975543

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.29  E-value=2.5e-12  Score=88.73  Aligned_cols=59  Identities=22%  Similarity=0.358  Sum_probs=51.4

Q ss_pred             ChhhhccCCCeeE--------EEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLR--------VKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~--------v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+        |++..  .++|||||+|.+.++|..|++.|||..+.|++|.|.+++..
T Consensus        62 L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~  130 (143)
T 3egn_A           62 LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA  130 (143)
T ss_dssp             HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred             HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            4689999999876        44443  57899999999999999999999999999999999999743

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.29  E-value=1.4e-12  Score=96.90  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=54.0

Q ss_pred             ChhhhccCC--CeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYG--DVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG--~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||  .|.+|+|+..     ++|||||+|.+.++|++||+.|||..|.|++|+|.+++..
T Consensus        85 L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~  150 (229)
T 3q2s_C           85 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ  150 (229)
T ss_dssp             HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred             HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence            578999999  9999999872     5799999999999999999999999999999999998644

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=5.2e-12  Score=79.27  Aligned_cols=53  Identities=9%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.+.|++||+|..+++..   +.+||+|.+.++|.+|++ |||..+.||.|+|.+.+
T Consensus        32 L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt   84 (91)
T 2dnr_A           32 LLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS   84 (91)
T ss_dssp             HHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred             HHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence            467899999999999865   559999999999999997 99999999999999876

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.28  E-value=3.6e-12  Score=83.23  Aligned_cols=59  Identities=15%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeE-EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLR-VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~-v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||.|.+ |.++.    .++|+|||+|.+.++|++|++. ||..+.|+.|.|.++....
T Consensus        32 l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~   95 (104)
T 1wg5_A           32 IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             HHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred             HHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence            5689999999997 87765    3589999999999999999987 9999999999999886443

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.28  E-value=2.3e-12  Score=85.56  Aligned_cols=59  Identities=14%  Similarity=0.126  Sum_probs=52.7

Q ss_pred             ChhhhccCCCe-eEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDV-LRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V-~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|+.||.| .+|+++.    .++|||||+|.+.++|++|++. ||..+.|++|.|.++....
T Consensus        32 l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           32 VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             HHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred             HHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence            56899999999 8899876    3689999999999999999977 9999999999999987543

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.28  E-value=7.5e-13  Score=81.17  Aligned_cols=55  Identities=13%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+|.++.     .++|+|||+|.++++|++|++ ++|..+.|++|.|+++
T Consensus        16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           16 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence            468999999999999875     358999999999999999997 4999999999999864

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.28  E-value=8.5e-12  Score=81.17  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+|+++..     ++|||||+|.+.++|++|++  ++..+.|++|.|.++...
T Consensus        32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~   93 (103)
T 2cqg_A           32 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSK   93 (103)
T ss_dssp             HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence            5689999999999999873     36899999999999999998  578999999999998743

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.28  E-value=6.9e-12  Score=79.59  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee--cCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV--FGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..++|||||+|.+.++|+.    |+|..+  .|++|.|.++..
T Consensus        28 L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A           28 LQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP   83 (89)
T ss_dssp             HHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred             HHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence            568999999999999988889999999999999983    566655  489999998863

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.28  E-value=1.9e-12  Score=86.54  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|+.||.   |.+|+++.    .++|+|||+|.+.++|++|++ |||..+.|+.|+|.++....
T Consensus        34 l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~   99 (118)
T 2db1_A           34 VQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE   99 (118)
T ss_dssp             HHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred             HHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence            5689999999   89999886    257899999999999999998 99999999999999986443

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=98.94  E-value=3.5e-13  Score=89.77  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             ChhhhccCCCeeE--------EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLR--------VKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~--------v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+        |+++.     .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        24 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           24 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR   95 (116)
Confidence            5789999999998        87775     25799999999999999999999999999999999998744

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=8.6e-11  Score=75.58  Aligned_cols=70  Identities=13%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhc-----CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEK-----GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~-----G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      .++|-+.|||+++++..++.+.+++     | .+..|.+.+ +.+-|+|+|.+...|.+|.-.|||..+.| ++|++.
T Consensus        21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g-~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~g-r~Lr~g   95 (117)
T 2l9w_A           21 ETLICLFPLSDKVSPSLICQFLQEEIHINEK-DIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQG-KVIRSG   95 (117)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHTCCCTT-TCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETT-EEEEEE
T ss_pred             CcEEEEecCCCCCCHHHHHHHHhhhhccCcc-ceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecC-eEEEec
Confidence            5789999999999999999999999     9 899998886 77889999999999999999999999999 899997

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.25  E-value=2.3e-12  Score=88.17  Aligned_cols=58  Identities=12%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.   |.+|+++.    .++|+|||+|.+.++|++|++ |||..+.|+.|.|.++...
T Consensus        61 L~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~  125 (136)
T 2hgl_A           61 VQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT  125 (136)
T ss_dssp             HHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred             HHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence            5689999999   88999886    357899999999999999998 9999999999999988643

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.25  E-value=8.7e-13  Score=85.61  Aligned_cols=56  Identities=11%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+ .++.     .++|||||+|.+.++|++|++ |||..+.|++|.|.+++.
T Consensus        34 l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~   94 (101)
T 1fj7_A           34 LKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG   94 (101)
T ss_dssp             HHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred             HHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence            4679999999877 3332     468999999999999999998 999999999999999873

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.24  E-value=1.2e-12  Score=88.22  Aligned_cols=58  Identities=7%  Similarity=0.029  Sum_probs=50.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||.|.++.++.     .++|||||+|.+.++|.+|++ |||..+.|++|.|.++...
T Consensus        42 l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~  104 (124)
T 1wel_A           42 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK  104 (124)
T ss_dssp             HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred             HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence            568999999998743333     357999999999999999998 9999999999999998744

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.9e-11  Score=80.44  Aligned_cols=56  Identities=11%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|+.| .|.+|+++.    .++|+|||+|.+.++|++|+ .+||..+.|+.|.|..+..
T Consensus        33 l~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~   92 (109)
T 2dnn_A           33 VRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE   92 (109)
T ss_dssp             HHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred             HHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence            56899999 899999986    36899999999999999999 7999999999999988763

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.22  E-value=1.4e-11  Score=99.58  Aligned_cols=61  Identities=23%  Similarity=0.428  Sum_probs=55.5

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|..|.|+..     ++|||||+|.+.++|..||+.|||..|.|++|.|.+++....
T Consensus       119 L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~  184 (437)
T 3pgw_S          119 LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV  184 (437)
T ss_pred             HHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            5789999999999999862     589999999999999999999999999999999999986543

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.22  E-value=1.2e-11  Score=77.90  Aligned_cols=52  Identities=23%  Similarity=0.380  Sum_probs=47.9

Q ss_pred             ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q psy17274          1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVM   54 (184)
Q Consensus         1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~   54 (184)
                      |.++|++|    |       .|.++++.. .+|||||+|.+.++|++|+ .|||..+.|++|+|+
T Consensus        23 l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           23 MMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR   85 (87)
T ss_dssp             HHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred             HHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence            46789999    8       999999765 5899999999999999999 999999999999997

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.22  E-value=7.7e-12  Score=81.42  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.| +|+++..    ++|+|||+|.+.++|++|+ .+|+..+.|+.|.|.++..
T Consensus        32 l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~   91 (102)
T 1wez_A           32 IYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST   91 (102)
T ss_dssp             HHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred             HHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence            56899999955 9998872    5789999999999999999 5799999999999998763

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=80.49  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.|+.   |+++.     .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus        32 l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           32 LKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK   92 (102)
T ss_dssp             HHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence            4678888864   44444     24699999999999999999999999999999999999843

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.21  E-value=3.6e-12  Score=83.66  Aligned_cols=58  Identities=12%  Similarity=0.179  Sum_probs=51.8

Q ss_pred             ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||.   |.+|+++.    .++|+|||+|.+.++|++|++ +||..+.|+.|.|.++...
T Consensus        28 l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~   92 (107)
T 2lmi_A           28 VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE   92 (107)
T ss_dssp             HHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred             HHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence            4689999998   89999886    368999999999999999998 9999999999999988643

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.5e-11  Score=82.22  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCC----HHH----HHHHHH--HhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAE----SHQ----AHLAMM--HMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~----~~~----A~~Ai~--~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||+|.++.++.     .++|+|||+|.+    +++    |.+|+.  .|||..+.|++|+|.+.+..
T Consensus        23 Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g   96 (136)
T 2j8a_A           23 IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS   96 (136)
T ss_dssp             HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred             HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence            468999999999999887     368999999996    433    899998  89999999999999987643

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.17  E-value=1.5e-11  Score=77.71  Aligned_cols=56  Identities=20%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|+++..++|||||+|.+.++|++|+..  +..+.|++|.|.+++.
T Consensus        22 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~   77 (88)
T 1wf0_A           22 LREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP   77 (88)
T ss_dssp             HHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred             HHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence            5689999999999999877899999999999999764321  2344789999998874

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.16  E-value=1.1e-11  Score=80.58  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..    ++|||||+|.+.++|++|++  +|..+.|++|.|.++.
T Consensus        26 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~   84 (102)
T 2xs2_A           26 IRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI   84 (102)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred             HHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence            4689999999999999873    57999999999999999997  9999999999999876

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.15  E-value=8.9e-12  Score=85.53  Aligned_cols=57  Identities=16%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++|| |.+|+++.    .++|||||+|.+.++|++|+ .+|+..+.|+.|.|.++...
T Consensus        63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~  123 (139)
T 2hgn_A           63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT  123 (139)
T ss_dssp             HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred             HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence            568999999 77999886    36899999999999999999 89999999999999987643

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.12  E-value=6.9e-11  Score=85.55  Aligned_cols=57  Identities=11%  Similarity=0.095  Sum_probs=49.8

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+|++.+    .++|+|||+|.+.++|..|++.++ ..+.|++|.|.+.+.
T Consensus       126 L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~  186 (193)
T 2voo_A          126 IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD  186 (193)
T ss_dssp             HHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred             HHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence            467999999999999886    357999999999999999997665 589999999998763

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.10  E-value=1.8e-10  Score=85.03  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCC-----CCCCHHHHHHHHHhcCCceeEEEEcc---------CCCceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274         99 PSPTLHLSNIP-----ASVTEDELKEAFTEKGFTVKGFKFFP---------KDRKMALLQLDSIEEAITALIQMHNHQLS  164 (184)
Q Consensus        99 ~~~~l~v~nlp-----~~~t~~~l~~~F~~~G~~v~~v~v~~---------~~~~~afV~f~~~~~A~~Ai~~lng~~i~  164 (184)
                      ++.++.+.|+-     ..-.+++|++.|++|| .|.++.|..         ..+|++||+|.+.++|.+|+..|||+.++
T Consensus       123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G-~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~  201 (222)
T 3dxb_A          123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA  201 (222)
T ss_dssp             BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             ccccchhhcCCCHHHHHHHHHHHHHHHHHccC-CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence            45667777764     2234789999999999 999999863         23589999999999999999999999999


Q ss_pred             CCCeEEEEecCc
Q psy17274        165 EQSHLRVSFSKS  176 (184)
Q Consensus       165 g~~~l~v~~~~~  176 (184)
                      | |.|+++|...
T Consensus       202 g-r~i~~~~~~~  212 (222)
T 3dxb_A          202 G-RKVVAEVYDQ  212 (222)
T ss_dssp             S-SBCEEEECCH
T ss_pred             C-eEEEEEEcCH
Confidence            9 9999999763

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=4.7e-11  Score=75.27  Aligned_cols=52  Identities=25%  Similarity=0.462  Sum_probs=46.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.+.|++||+|..|++..   +.+||+|.+.++|.+||+ |||..+.||.|+|.+-
T Consensus        41 L~~~F~~~G~Vilvr~v~---d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k   92 (95)
T 1ufw_A           41 LMQTLGSYGTIVLVRINQ---GQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP   92 (95)
T ss_dssp             HHHHHHHHSCCSEEEEET---TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred             HHHHHHHCCCEEEEEEec---CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence            467899999999999875   449999999999999998 9999999999999753

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.09  E-value=9e-11  Score=86.61  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             ChhhhccCCCeeEEEEee---------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY---------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |++.|++||+|.+|.+.+         .++|++||+|.+.++|.+|++.|||+.|.||+|.+.|+.
T Consensus       146 l~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          146 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             HHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence            467899999999999874         246899999999999999999999999999999999975

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.7e-10  Score=76.39  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=42.5

Q ss_pred             ChhhhccCCCeeEEEEee--------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY--------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||.|. +.++.        .++|||||+|.+.++|++|++.|+  .+.|+.|.+..+
T Consensus        25 L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~   85 (114)
T 2dnl_A           25 ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS   85 (114)
T ss_dssp             HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred             HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence            568999999999 76664        248999999999999999999983  366666666543

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.09  E-value=1.2e-10  Score=91.08  Aligned_cols=56  Identities=11%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec---Cc--EEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF---GK--QMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~--~l~v~~s~   57 (184)
                      |.++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|||..+.   |+  +|.+.|..
T Consensus        37 L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           37 LLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE   97 (345)
T ss_dssp             HHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred             HHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence            568999999999998654 7899999999999999999999999884   55  67788764

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=2.8e-11  Score=81.35  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             ChhhhccCCCe----eEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDV----LRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V----~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|    .+|+++.    .++|+|||+|.+.++|++|++. |+..+.|+.|.|..+...
T Consensus        40 l~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~  105 (123)
T 2dha_A           40 VVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA  105 (123)
T ss_dssp             HHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred             HHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence            56899999986    6888876    3579999999999999999975 999999999999887643

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.02  E-value=1.3e-10  Score=78.35  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             ChhhhccCCCee--EEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVL--RVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~--~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++| .|.  +|+++.    .++|||||+|.++++|++|++ +++..+.|+.|.|..+..
T Consensus        59 L~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~  120 (126)
T 2hgm_A           59 IVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ  120 (126)
T ss_dssp             HHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred             HHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence            56899999 676  898876    368999999999999999997 578999999999988763

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.53  E-value=1.6e-07  Score=60.15  Aligned_cols=74  Identities=14%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             CEEEEeCCCCCC-C----HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASV-T----EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~-t----~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++|++.||+..+ .    .+.++++|..|+ ++.....++ +=.-..|.|.++++|.+|-..||+..+.| +.|+|.|+.
T Consensus         6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~-~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g-~~~r~YFgq   82 (104)
T 1wey_A            6 SGLIACVANDDVFSESETRAKFESLFRTYD-KDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLG-KEMKLYFAQ   82 (104)
T ss_dssp             CEEEEECCCGGGGSTTTHHHHHHHHHHTTC-SSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETT-EECEEECCC
T ss_pred             ceEEEecCCHHHcCCHHHHHHHHHHHHhhC-cCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecC-ceeEEEecC
Confidence            469999998755 3    256799999999 777776664 54568999999999999999999999999 899999997


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      +.
T Consensus        83 ~~   84 (104)
T 1wey_A           83 TL   84 (104)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.49  E-value=2.5e-07  Score=61.47  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCC-HHHHHHHHHHhC--CceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAE-SHQAHLAMMHMD--KLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~-~~~A~~Ai~~l~--g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|..|.+... ...|||+|.+ +++|..|+..||  |..+.|..+.++...
T Consensus        36 Lke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~   94 (121)
T 1owx_A           36 LHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE   94 (121)
T ss_dssp             HHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred             HHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence            4679999999999998764 4589999999 799999999994  778899888888654

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=1e-05  Score=51.55  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh----cCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~----~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..++|.|.|||+.++++.|.-.|+.    -|+.|..++..+   +.|+|+|.+.+.|.+.++. ..+.+.+ ..|.|.
T Consensus         7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~-~~LsV~   79 (104)
T 2dhx_A            7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHG-AQLSLR   79 (104)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSS-SBCEEE
T ss_pred             CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecC-eEEEEE
Confidence            3568999999999999999999988    344899998765   8899999999999998873 3677777 588775

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.10  E-value=3.9e-06  Score=54.03  Aligned_cols=52  Identities=17%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             hhhccC-----CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274          3 SLTGVY-----GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI   55 (184)
Q Consensus         3 ~lF~~y-----G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~   55 (184)
                      ++.++|     |.+.+|.+.... +=|+|+|.|...|-+|.-.|+|.+|.|++|+|.-
T Consensus        40 ~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT   96 (117)
T 2l9w_A           40 QFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT   96 (117)
T ss_dssp             HHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             HHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence            566777     999999865544 6699999999999999999999999999999973

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=98.05  E-value=4.4e-05  Score=47.91  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-------CceEEEEeCCHHHHHHHHHHhcCeecCCC----CeEE
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-------RKMALLQLDSIEEAITALIQMHNHQLSEQ----SHLR  170 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-------~~~afV~f~~~~~A~~Ai~~lng~~i~g~----~~l~  170 (184)
                      .|.|.+||+++|++++.+..+... .+......+..       ...|+|.|.+.+++..-.+.++|+.+.++    .+-.
T Consensus         3 KvVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~   81 (91)
T 1uw4_A            3 KVVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI   81 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred             EEEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence            588999999999999999999998 77766665421       36899999999999999999999988664    2446


Q ss_pred             EEecCcc
Q psy17274        171 VSFSKSN  177 (184)
Q Consensus       171 v~~~~~~  177 (184)
                      |.||..+
T Consensus        82 VE~AP~q   88 (91)
T 1uw4_A           82 VEFAPFQ   88 (91)
T ss_dssp             EEECSSC
T ss_pred             EEEcCCC
Confidence            7776544

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=97.98  E-value=3.8e-05  Score=48.39  Aligned_cols=56  Identities=20%  Similarity=0.343  Sum_probs=47.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH  159 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln  159 (184)
                      ...+++| +.|+...-.||.++|++|| .| .|+.+  +-..|||.|.+++.|..|+..++
T Consensus        15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv-~I~Wi--dDTsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCSEEEE-ECCTTCCHHHHHHHHTTTC-SC-CCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred             CCeEEEE-eCChhhhhHHHHHHhhccC-CE-EEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence            3567777 9999999999999999998 55 36555  34689999999999999999774

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.88  E-value=8.7e-05  Score=48.73  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      ..-|.|.+.|+.. ...+.+.|++|| .|.+... +...+.-.|+|.++.+|.+||. .||..++|.-.|-|.
T Consensus        24 ~~wVtVFGFp~~~-~~~VL~~F~~~G-~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~   92 (119)
T 1wwh_A           24 DTWVTVFGFPQAS-ASYILLQFAQYG-NILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK   92 (119)
T ss_dssp             GGEEEEECCCGGG-HHHHHHHHHTTS-CEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHhhC-cEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence            4569999999886 567888999999 9988865 4567899999999999999999 599999873233333

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=97.77  E-value=2.4e-05  Score=49.42  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=47.0

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH  159 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln  159 (184)
                      ..+++| +.|+...-.||.++|++|| .| .|+.+  +-..|||.|.+++.|..|+..++
T Consensus         6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv-~I~Wi--dDTsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEEE-ECCTTCCHHHHHHHTTTSE-EE-EEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred             CeEEEE-eCChhhhhHHHHHHHhccC-CE-EEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence            456777 9999999999999999999 55 46666  34689999999999999999875

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.60  E-value=0.00014  Score=46.51  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      -+||..|+++.+...+++- .-..|.|.++++|.+|-..|++..|.|+.|+|.++.
T Consensus        28 e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq   82 (104)
T 1wey_A           28 ESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ   82 (104)
T ss_dssp             HHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred             HHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence            4689999999998877743 468999999999999999999999999999999987

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.54  E-value=0.00021  Score=46.88  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=44.7

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecC-cEEEEEEcc
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFG-KQMRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~v~~s~   57 (184)
                      .+.|++||+|.+... .....+-.|.|.++.+|++|+ ..||..+.| -.|=|....
T Consensus        41 L~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~   95 (119)
T 1wwh_A           41 LLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI   95 (119)
T ss_dssp             HHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred             HHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence            467999999999875 346799999999999999999 679999975 556676644

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=97.42  E-value=0.00042  Score=43.75  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecCCC----Ce
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLSEQ----SH  168 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~----~~  168 (184)
                      +-.|.|+.||+++||+++.+.+++.- .+......+.       .-..|+|.|.+.++...-.+..+|+.+-++    .+
T Consensus         9 ~~KvVIRrLPP~Ltee~F~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~   87 (97)
T 2l08_A            9 SHMVVIRRLPPGLTKEQLEEQLRPLP-AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP   87 (97)
T ss_dssp             CCCEEEECCCSCSCHHHHTTTTSCCS-SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred             ceeEEEeCCCCCCCHHHHHHHhCCcC-ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence            44599999999999999988888765 5443333321       125799999999999999999999998764    24


Q ss_pred             EEEEecCc
Q psy17274        169 LRVSFSKS  176 (184)
Q Consensus       169 l~v~~~~~  176 (184)
                      -.|.||..
T Consensus        88 a~VE~APy   95 (97)
T 2l08_A           88 AVVEFAPF   95 (97)
T ss_dssp             EEEEECCC
T ss_pred             eEEEecCC
Confidence            55666653

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=97.10  E-value=0.00034  Score=56.62  Aligned_cols=57  Identities=12%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ  157 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~  157 (184)
                      ..+.|+|. .|..+++.+|.+.|++|| .|.++........+|.|||.+.+++..++..
T Consensus        52 a~rsv~v~-~~~~~~~~~l~~y~~~~g-~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           52 AQRTVLIH-CPEKISENKFLKYLSQFG-PINNHFFYESFGLYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             HHTEEEEE-ECCC---CHHHHHHGGGS-CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred             hcceEEEE-cCCCCCHHHHHHHHHhcC-CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence            35679998 799999999999999999 9999988764557999999999988876543

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=96.98  E-value=0.0013  Score=43.84  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEc----------------c--CCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFF----------------P--KDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~----------------~--~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      ...|.|.+.|++.++ .+.+.|++|| .|.. +...                |  ...+.-.|+|+++.+|.+||. -||
T Consensus         7 e~~VtVFGFp~~~~~-~VI~~Fs~~G-~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG   83 (132)
T 3p3d_A            7 ELAILVFGYPETMAN-QVIAYFQEFG-TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG   83 (132)
T ss_dssp             -CEEEEECCCGGGHH-HHHHHHGGGS-CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred             ceEEEEEecCHHHHH-HHHHHHHhhc-eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence            446889999888754 5678899999 7655 2211                1  124677999999999999998 799


Q ss_pred             eecCCCCeEEEEec
Q psy17274        161 HQLSEQSHLRVSFS  174 (184)
Q Consensus       161 ~~i~g~~~l~v~~~  174 (184)
                      ..++| .-|-|..=
T Consensus        84 ~ii~G-~mIGV~Py   96 (132)
T 3p3d_A           84 AVFNG-VLLGVIPY   96 (132)
T ss_dssp             CEETT-EECEEEEC
T ss_pred             eEeCc-EEEEEEEC
Confidence            99999 56666543

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=96.96  E-value=0.00033  Score=46.65  Aligned_cols=57  Identities=14%  Similarity=0.125  Sum_probs=44.7

Q ss_pred             hhhhccCCCeeEE-EEee------------------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          2 FSLTGVYGDVLRV-KILY------------------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         2 ~~lF~~yG~V~~v-~~~~------------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      .+.|++||.|.+- ...+                  ...++-.|+|.++.+|.+|+ ..||..+.|..|-|.+....
T Consensus        24 I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py~~~   99 (132)
T 3p3d_A           24 IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPYTKD   99 (132)
T ss_dssp             HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEECCHH
T ss_pred             HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEECCHH
Confidence            4689999999772 1110                  13678899999999999999 67999999998888876544

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.62  E-value=0.00089  Score=42.28  Aligned_cols=39  Identities=18%  Similarity=0.465  Sum_probs=32.2

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD   42 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~   42 (184)
                      |.++|++||   -|.|.+-.-..|||.|.+++.|..|+.++.
T Consensus        22 i~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A           22 LYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             HHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred             HHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence            578999999   455555456889999999999999998875

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.58  E-value=0.0092  Score=37.96  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=35.4

Q ss_pred             CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274          9 GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI   55 (184)
Q Consensus         9 G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~   55 (184)
                      |+|.+|....   +.|+|+|.+.+.|++.++. ....|.|.+|.|..
T Consensus        38 G~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P   80 (104)
T 2dhx_A           38 GPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP   80 (104)
T ss_dssp             CCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred             ceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence            7899998754   8899999999999999943 35678888888864

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.43  E-value=0.0011  Score=41.72  Aligned_cols=39  Identities=18%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD   42 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~   42 (184)
                      |.++|++||.|.   |.+-.-..|||.|.+++.|..|+.+++
T Consensus        32 I~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           32 LYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             HHHHHTTTCSCC---CEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHhhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence            578999999543   223245889999999999999998764

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=94.64  E-value=0.0098  Score=48.14  Aligned_cols=40  Identities=5%  Similarity=-0.000  Sum_probs=31.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHH
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMH   40 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~   40 (184)
                      |++.|++||+|.++......+-||.|+|.+.+++..++..
T Consensus        69 l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           69 FLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             HHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred             HHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence            4678999999999987777778999999999999977643

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=94.18  E-value=0.14  Score=42.01  Aligned_cols=56  Identities=20%  Similarity=0.346  Sum_probs=46.6

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      ..+++|+ .|..+...+|.++|+.|| .+ .|+.+  +...|||.|.+.+.|..++..++.
T Consensus       440 ~~vl~v~-f~~~~~~~~i~~~fs~fg-~v-~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~  495 (507)
T 3d45_A          440 DHVLHVT-FPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVQIAVNTSKY  495 (507)
T ss_dssp             GGEEEEE-CCTTCCHHHHHHHGGGGC-CC-EEEEC--SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CcEEEEe-CCCCCCHHHHHHHHHhcC-CE-EEEEE--cCCeEEEEECCHHHHHHHHHHHHh
Confidence            4567776 899999999999999999 54 45544  567899999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2adca2	88	d.58.7.1 (A:444-531) Polypyrimidine tract-binding	6e-23
d2adca1	109	d.58.7.1 (A:335-443) Polypyrimidine tract-binding	4e-21
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	1e-13
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	2e-06
d1wexa_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	2e-11
d1whya_	97	d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb	2e-10
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	3e-10
d2b0ga1	83	d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosoph	1e-08
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	1e-08
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	4e-08
d2cq2a1	101	d.58.7.1 (A:25-125) Alkylation repair AlkB homolog	7e-08
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	1e-07
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	1e-07
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	1e-07
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	2e-07
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	3e-07
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	3e-07
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	3e-07
d1nu4a_	91	d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo	3e-07
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	3e-07
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	4e-07
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	4e-07
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	4e-07
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	5e-07
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	6e-07
d2cq0a1	90	d.58.7.1 (A:231-320) Eukaryotic translation initia	6e-07
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	6e-07
d2cq3a1	93	d.58.7.1 (A:110-202) RNA-binding protein 9 {Human	1e-06
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	1e-06
d2ghpa1	81	d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici	2e-06
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	2e-06
d2cpda1	86	d.58.7.1 (A:223-308) APOBEC1 stimulating protein {	4e-06
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	4e-06
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	4e-06
d1x5ta1	83	d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu	7e-06
d2cq1a1	88	d.58.7.1 (A:51-138) Polypyrimidine tract-binding p	1e-05
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	3e-05
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	3e-05
d1wi8a_	104	d.58.7.1 (A:) Eukaryotic translation initiation fa	3e-05
d2cpxa1	102	d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41	4e-05
d2disa1	96	d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {	6e-05
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	7e-05
d1x4da1	89	d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [	8e-05
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	9e-05
d2bz2a1	79	d.58.7.1 (A:35-113) Negative elongation factor E,	9e-05
d1wg1a_	88	d.58.7.1 (A:) Probable RNA-binding protein KIAA157	1e-04
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	1e-04
d2cpea1	101	d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma	1e-04
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	2e-04
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	3e-04
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	4e-04
d1wg4a_	98	d.58.7.1 (A:) Splicing factor, arginine/serine-ric	5e-04
d2cqha1	80	d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is	0.001
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	0.002
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	0.002
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	0.002
d1x4ha1	98	d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (	0.003
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	0.003
d1x5sa1	90	d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote	0.003
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	0.004

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 6e-23
 Identities = 61/88 (69%), Positives = 71/88 (80%)

Query: 91  KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEE 150
           KNFQNI+PPS TLHLSNIP SV+E++LK  F+  G  VKGFKFF KDRKMAL+Q+ S+EE
Sbjct: 1   KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 60

Query: 151 AITALIQMHNHQLSEQSHLRVSFSKSNI 178
           A+ ALI +HNH L E  HLRVSFSKS I
Sbjct: 61  AVQALIDLHNHDLGENHHLRVSFSKSTI 88

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 4e-21
 Identities = 59/90 (65%), Positives = 74/90 (82%)

Query: 1   MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
           +F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++  ++ GK +R+ +SKHQ 
Sbjct: 20  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79

Query: 61  VQLPKEGQPDAGLTKDYTASPLHRFKKPGS 90
           VQLP+EGQ D GLTKDY  SPLHRFKKPGS
Sbjct: 80  VQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 99  PSPTLHL--SNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
            SP L +   N+   VT D L + F++ G  +K   F   ++  ALLQ      A  A +
Sbjct: 4   QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 63

Query: 157 QMHNHQLSEQS-HLRVSFSKSNIQDIRDN 184
            +    +      LR+ FSK    +++ N
Sbjct: 64  SLDGQNIYNACCTLRIDFSKLTSLNVKYN 92

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 1   MFSLTGVYGDVLRVKILYNK-KDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISK 57
           +  +   +G VL++       +  AL+Q A+   A  A + +D   +      +R+  SK
Sbjct: 24  LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 83

Query: 58  HQAVQLPKEGQPDAGLTKDYTASPL 82
             ++ +          ++DYT   L
Sbjct: 84  LTSLNVKYNNDK----SRDYTRPDL 104

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (134), Expect = 2e-11
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148
           GS    +    SP +H+  +  SV E +L EA  + G            ++ AL++ ++I
Sbjct: 4   GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY--VMMMPFKRQALVEFENI 61

Query: 149 EEAITALIQMHNHQLSEQSH-LRVSFSKS 176
           + A   +    +  +         ++S S
Sbjct: 62  DSAKECVTFAADVPVYIAGQQAFFNYSTS 90

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (127), Expect = 2e-10
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
            P+  L +  +  + +   L   F   G          K    A +Q +S++ A  A  +
Sbjct: 15  NPTTRLWVGGLGPNTSLAALAREFDRFGSIR--TIDHVKGDSFAYIQYESLDAAQAACAK 72

Query: 158 MHNHQLSEQSH-LRVSFSKSN 177
           M    L      LRV F+KS 
Sbjct: 73  MRGFPLGGPDRRLRVDFAKSG 93

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 3e-10
 Identities = 11/91 (12%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 91  KNFQNIY----PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
             F+++     P + T++   I + +T+  +++ F+  G  ++       ++  + ++  
Sbjct: 5   LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--IRVFPEKGYSFVRFS 62

Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
           + E A  A++ ++   +     ++  + K +
Sbjct: 63  THESAAHAIVSVNGTTIEGH-VVKCYWGKES 92

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 47.9 bits (113), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           PP+  L L+N+P    E  L      +    K  +  P    +A ++  +  ++  A   
Sbjct: 6   PPNQILFLTNLPEETNEMMLSM-LFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA 64

Query: 158 MHNHQLSEQSHLRVSFSK 175
           +   +++    ++++F+K
Sbjct: 65  LQGFKITPTHAMKITFAK 82

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 94  QNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKMALLQLDSIE 149
           + +   S TL++ N+    TE+++ E F++ G   K      K          ++  S  
Sbjct: 1   EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60

Query: 150 EAITALIQMHNHQLSEQSHLRVSFSKS 176
           +A  A+  ++  +L ++  +R  +   
Sbjct: 61  DAENAMRYINGTRLDDR-IIRTDWDAG 86

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 4e-08
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
                +++ N+P  +   ++++ F + G       K        A ++ +   +A  A+ 
Sbjct: 12  NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 71

Query: 157 QMHNHQLSEQSHLRVSFSKSN 177
               +       LRV F +S 
Sbjct: 72  GRDGYDYDGY-RLRVEFPRSG 91

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 7e-08
 Identities = 7/87 (8%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 98  PPSPTLHLS--NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
             + +L ++   +   V+ ++L     +    +      P ++  +  +  + EE+  A 
Sbjct: 16  YATQSLVVANGGLGNGVSRNQLLPVLEK--CGLVDALLMPPNKPYSFARYRTTEESKRAY 73

Query: 156 IQMHNHQLSEQSHLRVSFSKSNIQDIR 182
           + ++  ++ +    +++   + ++ ++
Sbjct: 74  VTLNGKEVVDDLGQKITLYLNFVEKVQ 100

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFT-----VKGFKFFPKDRKMALLQLDSIEEAI 152
             +  + + NIP    + E++E F+  G        K        R    +   + ++A 
Sbjct: 6   QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65

Query: 153 TALIQMHNHQLSEQSHLRVSFSKSNI 178
            A   + +        L + ++ S +
Sbjct: 66  KAFNALCHSTHLYGRRLVLEWADSEV 91

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
               T+++  +   V+E  L E F + G  V       +     +    ++  S E+A  
Sbjct: 7   NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66

Query: 154 ALIQMHNHQLSEQSHLRVSFSKSNIQDI 181
           A+  M   +L  +  +RV+ + ++ +++
Sbjct: 67  AIKIMDMIKLYGK-PIRVNKASAHNKNL 93

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 103 LHLSNIPASVTEDELKEAFTEKG-------FTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
           L + N+  S TE+ LK  F++ G          K             ++    E+A  AL
Sbjct: 1   LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60

Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
            Q+  H + +   L V  S+ 
Sbjct: 61  KQLQGHTV-DGHKLEVRISER 80

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148
           G K F         L + N+P  +TE+E+++ F + G       F  KD+    ++L++ 
Sbjct: 1   GEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDKGFGFIRLETR 54

Query: 149 EEAITALIQMHNHQLSEQSHLRVSFSKSN 177
             A  A +++ N  L  +  LRV F+  +
Sbjct: 55  TLAEIAKVELDNMPLRGK-QLRVRFACHS 82

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
            P+  L +  +    TE +L+E F++ G        + +     R  A +  +++++A  
Sbjct: 7   DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66

Query: 154 ALIQMHNHQLSEQSHLRV 171
           A  + +  +L  +  +RV
Sbjct: 67  AKERANGMELDGR-RIRV 83

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
             +  L++ N+P  +T +E+ + F + G          P+ R  A +  + I +A  A  
Sbjct: 5   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64

Query: 157 QMHNHQLSEQSHLRVSFSKSN 177
            +    +  + +L V +  +N
Sbjct: 65  HLSGFNVCNR-YLVVLYYNAN 84

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFT--VKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159
            + + N+  S+    L + F+  G     K        +    +  ++ E A  A+ +M+
Sbjct: 10  NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69

Query: 160 NHQLSEQSHLRVSFSKS 176
              L+++  + V   KS
Sbjct: 70  GMLLNDR-KVFVGRFKS 85

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTE-----KGFTVKGFKFFPKDRKMALLQLDSIEEAIT 153
           P+ T++++N+   + +DELK++                    K R  A +    +  A  
Sbjct: 2   PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61

Query: 154 ALIQMHNHQLSEQSHLRVSFSKSN 177
           AL  M      ++  +R+ ++K++
Sbjct: 62  ALRSMQGFPFYDK-PMRIQYAKTD 84

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.3 bits (104), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKG----FTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
            L +++I     EDE++E F + G      +   +     +  AL++ ++ ++A+ A   
Sbjct: 9   ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68

Query: 158 MHNHQLSEQSHLRVSFSKS 176
           ++  ++  Q  ++V +   
Sbjct: 69  LNGAEIMGQ-TIQVDWCFV 86

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMA 141
           +  G+   Q   P    L + ++P    + +L + F   G  V    F        +   
Sbjct: 4   QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 63

Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
            +  D+   A  A+  M+  Q+  +  L+V   +S
Sbjct: 64  FVSYDNPVSAQAAIQSMNGFQIGMK-RLKVQLKRS 97

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 43.8 bits (103), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
            L ++ +P  +T+ EL   F   G                   A +   S  ++  A+  
Sbjct: 4   NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63

Query: 158 MHNHQLSEQSHLRVSFSK 175
           ++   +  +  L+VS+++
Sbjct: 64  LNGITVRNK-RLKVSYAR 80

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 43.8 bits (103), Expect = 4e-07
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQ 157
            L+++N+P ++T+D+L   F + G  V+      K        A ++ +  EEA  A+  
Sbjct: 8   NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67

Query: 158 MHNHQLSEQSH-LRVSF 173
           ++N      S  L V  
Sbjct: 68  LNNVIPEGGSQPLSVRL 84

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-07
 Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
            L ++ +P ++T++E +  F   G          K          +     ++A  A+  
Sbjct: 4   NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63

Query: 158 MHNHQLSEQSHLRVSFSK 175
           ++  +L  +  ++VS+++
Sbjct: 64  LNGLRLQTK-TIKVSYAR 80

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 6e-07
 Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQ 157
            L++S +P ++T+ EL++ F++ G  +       +   +      ++ D   EA  A+  
Sbjct: 8   NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67

Query: 158 MHNHQLSEQSH-LRVSFS 174
           ++  + S  +  + V F+
Sbjct: 68  LNGQKPSGATEPITVKFA 85

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 6e-07
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
             + T+ ++N+     E +L+E F   G   + +    K     +  A +     E+A  
Sbjct: 6   DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65

Query: 154 ALIQMHNHQLSEQSHLRVSFSK 175
           A+  +          L V ++K
Sbjct: 66  AIAGVSGFGYDHL-ILNVEWAK 86

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 6e-07
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKG---FKFFPKDRKMALLQLDSIEEAITALIQMH 159
           L +SN+   V++ +++E F E G   K    +    +    A +  +   +A+ A+ Q +
Sbjct: 3   LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62

Query: 160 NHQLSEQSHLRVSFSKS 176
              L  +  + +    S
Sbjct: 63  GVPLDGRP-MNIQLVTS 78

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITAL 155
                LH+SNIP    + +L++ F + G  +     F +   +    +  ++  +A  A 
Sbjct: 9   STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68

Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
            ++H   +  +  + V+ + +
Sbjct: 69  EKLHGTVVEGR-KIEVNNATA 88

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKG----FTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           +L++ ++   VTE  L E F+  G      V       +    A +      +A  AL  
Sbjct: 2   SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61

Query: 158 MHNHQLSEQSHLRVSFSKSN 177
           M+   +  +  +R+ +S+ +
Sbjct: 62  MNFDVIKGK-PVRIMWSQRD 80

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFPKDRKMALLQLDSIEEAITALIQ 157
           TL ++N P S T+  +++   +              F   R+ A + + S E+A   + +
Sbjct: 3   TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62

Query: 158 MHNHQLSEQSHLRVSFSK 175
           ++  ++ E   L    S 
Sbjct: 63  LNGLKI-EGYTLVTKVSN 79

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
             S  L + N+  + +E++L++ F+  G   +            +  A +     E A+ 
Sbjct: 6   SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65

Query: 154 ALIQMHNHQLSEQSHLRVSFSKS 176
           A  ++       +  L V  S  
Sbjct: 66  AYAEVDGQVFQGR-MLHVLPSTI 87

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
            L++ N+  S +E+ +++ F          +   K R  A +   + E+A+ A+  ++  
Sbjct: 10  ILYVRNLMLSTSEEMIEKEF-NNIKPGAVER-VKKIRDYAFVHFSNREDAVEAMKALNGK 67

Query: 162 QLSEQSHLRVSFSK 175
            L     + V+ +K
Sbjct: 68  VLDGS-PIEVTLAK 80

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITAL 155
               TL++ N+   VTE  + + F++ G                   ++     +A  AL
Sbjct: 6   GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAAL 65

Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
             M+  ++  +  ++V+++ +
Sbjct: 66  AAMNGRKILGK-EVKVNWATT 85

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
            + TL   N+  ++TEDELKE F E    ++      K + +A ++  S  +A   L + 
Sbjct: 15  AARTLLAKNLSFNITEDELKEVF-EDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 73

Query: 159 HNHQLSEQSHLRVSFSKS 176
              ++  +  + + ++  
Sbjct: 74  QGAEIDGR-SVSLYYTGE 90

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 7e-06
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-----PKDRKMALLQLDSIEEAITALIQ 157
           + + N+   + E  L + F+  G  ++  K          +  A +   S + +  A+  
Sbjct: 1   IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60

Query: 158 MHNHQLSEQSHLRVSFSKS 176
           M+   L  +  + VS++  
Sbjct: 61  MNGQYLCNR-PITVSYAFK 78

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
            PS  LH+  +P  VTE E+        F         K +  A L+L + E AIT +  
Sbjct: 6   APSRVLHIRKLPGEVTETEVIALG--LPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63

Query: 158 MHNHQLSEQSH-LRVSFSKS 176
                   ++  + + +S  
Sbjct: 64  YSAVTPHLRNQPIYIQYSNH 83

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
            L++  +   V +  L  AF   G           +    R  A ++ +  E+A  A+  
Sbjct: 7   VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66

Query: 158 MHNHQLSEQSHLRVSFSK 175
           M+  +L  +  +RV+ +K
Sbjct: 67  MNESELFGR-TIRVNLAK 83

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 103 LHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
           L +  +P  + +D++KE  T     K F +         +  A  +   I     A+  +
Sbjct: 4   LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63

Query: 159 HNHQLSEQSHLRVSFSKSN 177
           +  QL ++  L V  +   
Sbjct: 64  NGMQLGDK-KLLVQRASVG 81

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD---SIEEAITAL 155
           P  T  L N+P  VTE+ +KE F     +       P + +             +++ + 
Sbjct: 14  PPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73

Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
           + ++   L  +  +RV  +  
Sbjct: 74  LSLNEESLGNK-RIRVDVADQ 93

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 86  KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMA 141
           K P   ++ N   P+  L+L N+   VTE +L   F      KG  ++      + R  A
Sbjct: 5   KIPMFSSY-NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63

Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
            +   + E A  AL  ++ ++L  +  L + F K+
Sbjct: 64  FITFPNKEIAWQALHLVNGYKLYGK-ILVIEFGKN 97

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 6e-05
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD------RKMALLQLDSIEEAITAL 155
            L +  IP     +E+ E   +    V     +         R  A ++ +S   A  A 
Sbjct: 3   RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62

Query: 156 IQMHNHQLSEQSH-LRVSFSK 175
            ++   ++    H + V +++
Sbjct: 63  RKLMPGRIQLWGHQIAVDWAE 83

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 62  QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSP-TLHLSNIPASVTEDELKEA 120
           Q+P   Q D             + ++       N  P     L ++ IP +V E +L++ 
Sbjct: 3   QIPLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQL 62

Query: 121 F----TEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
           F      +   +   +   + R    ++  S   A  A+  ++   +  +  L+V+ + S
Sbjct: 63  FERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK-RLKVALAAS 121

Query: 177 NIQ 179
             Q
Sbjct: 122 GHQ 124

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 8e-05
 Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 2/80 (2%)

Query: 99  PSPTLHLSNIP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
               +H+ +         +L +     G           +     +      +A      
Sbjct: 7   TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYT 66

Query: 158 MHNHQLSEQSHLRVSFSKSN 177
                +  +  +RV  S+  
Sbjct: 67  TTPALVFGK-PVRVHLSQKY 85

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 89  GSKNFQNIYPPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147
           GS    +    +  + + N+    V + +++  F++ G  + G          A +Q  +
Sbjct: 4   GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG-KIVGCSVHK---GFAFVQYVN 59

Query: 148 IEEAITALIQMHNHQLSEQSHLRVSFSKS 176
              A  A+       ++ Q  L ++ +  
Sbjct: 60  ERNARAAVAGEDGRMIAGQ-VLDINLAAE 87

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 9e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
              TL++      +T   L+ AF+   F           R  A +  + +E A  A+ ++
Sbjct: 4   KGNTLYVYGED--MTPTLLRGAFSP--FGNIIDLSMDPPRNCAFVTYEKMESADQAVAEL 59

Query: 159 HNHQLSEQSHLRVSFSK 175
           +  Q+     L+V+ ++
Sbjct: 60  NGTQVESV-QLKVNIAR 75

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
             S  + + N+P      E+ +   +            +   +    L + E+A  A+  
Sbjct: 3   SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFV---TLLNGEQAQNAIQM 59

Query: 158 MHNHQLSEQSHLRVSFSKSN 177
            H +    +  L V    ++
Sbjct: 60  FHQYSFRGK-DLIVQLQPTD 78

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQM 158
           + +  +    T++ L+E F + G   +         K       +            +  
Sbjct: 3   MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61

Query: 159 HNHQL 163
             H+L
Sbjct: 62  SRHEL 66

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKG------FTVKGFKFFPKDRK------MALLQL 145
             +  +++  +  SVT D+L + F + G       T +       D++       A +  
Sbjct: 6   SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65

Query: 146 DSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
           +    A  A+             L+VS ++  
Sbjct: 66  EDPPTAKAAVEWFDGKDFQGS-KLKVSLARKK 96

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 86  KKPGSKNFQNIYPPSP---TLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDR 138
           K P  +   N+ P      T+    + A +   +L++ F+  G          +   + +
Sbjct: 1   KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60

Query: 139 KMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
            +A ++   I+      I +   +L     + V  S++
Sbjct: 61  GIAYVEFCEIQSV-PLAIGLTGQRLLGV-PIIVQASQA 96

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
           ++ + NIP   TE++LK+ F+E G  V     + ++          +    E A++A+  
Sbjct: 10  SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69

Query: 158 MHNHQLSEQSHLRVSFSKS 176
           ++  + S +  LRV  + S
Sbjct: 70  LNGREFSGR-ALRVDNAAS 87

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 98  PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAIT 153
           P    + + N+P +V+ DE+ + F               ++ M    A++  +S +EA  
Sbjct: 7   PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 66

Query: 154 ALIQMHNHQLSEQSHLRVSF 173
           A+I +++  +  +  +++  
Sbjct: 67  AVIDLNDRPIGSR-KVKLVL 85

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 98  PPSP----TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAIT 153
           PP+      + +S +P S +  +LK+   E G          +   M +++    E+   
Sbjct: 9   PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDV---CYADVQKDGMGMVEYLRKEDMEY 65

Query: 154 ALIQMHNHQLSEQSHLRVSFSK 175
           AL ++ + +         S+ +
Sbjct: 66  ALRKLDDTKFRSHE-GETSYIR 86

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
            L++ N+  +VT D+L++ F ++   +            A +       AI A+  +   
Sbjct: 3   KLYIGNLSPAVTADDLRQLFGDRKLPLA--GQVLLKSGYAFVDYPDQNWAIRAIETLSGK 60

Query: 162 QLSEQSHLRVSFSKS 176
                  + V +S S
Sbjct: 61  VELHGKIMEVDYSVS 75

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQ 157
            L +  +    TE+ L+  + + G                R    +   S+ E   A + 
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA-MA 80

Query: 158 MHNHQLSEQSHLRVSFSKS 176
              H +  +  +    + +
Sbjct: 81  ARPHSIDGRV-VEPKRAVA 98

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
            L +  +    T++ L+  F + G           +    R    +   ++EE   A + 
Sbjct: 8   KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA-MN 66

Query: 158 MHNHQL 163
              H++
Sbjct: 67  ARPHKV 72

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 99  PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITA 154
            +  L +  +P   TE +LKE F+  G  +                  ++    E  +  
Sbjct: 7   KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66

Query: 155 LIQMH 159
           + Q H
Sbjct: 67  MSQRH 71

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (76), Expect = 0.003
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 9/84 (10%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
           T+ + N+     E+ L E   + G           D    +  A  Q  + E A   L  
Sbjct: 10  TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69

Query: 158 MHNHQLSEQS-----HLRVSFSKS 176
                           L+V  + +
Sbjct: 70  ASLEAEGGGLKLDGRQLKVDLAVT 93

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 6/65 (9%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQM 158
           + +  +     E++++E F   G                     +     E      ++ 
Sbjct: 2   IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-MEK 60

Query: 159 HNHQL 163
             H +
Sbjct: 61  KYHNV 65

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQ 157
            L +  +     E  L++ F++ G   +      +     R    +  ++I++A  A++ 
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 158 MHNHQLSEQSHLRVSFSKS 176
           M+   +  +  +RV  +  
Sbjct: 67  MNGKSVDGR-QIRVDQAGK 84

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (74), Expect = 0.004
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQM 158
           + +  +  + T +++K  F + G        F K     R    +  +S +       ++
Sbjct: 2   IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEI 60

Query: 159 HNHQL 163
           H H++
Sbjct: 61  HFHEI 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.95
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.91
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.91
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.9
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.88
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.88
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.88
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.87
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.87
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.87
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.87
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.87
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.87
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.87
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.87
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.87
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.86
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.86
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.86
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.86
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.86
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.86
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.86
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.86
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.86
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.86
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.86
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.86
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.85
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.85
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.85
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.85
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.85
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.85
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.85
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.85
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.84
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.84
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.84
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.84
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.84
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.84
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.84
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.84
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.84
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.83
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.83
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.83
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.82
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.82
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.82
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.82
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.82
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.82
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.82
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.81
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.81
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.81
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.81
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.8
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.8
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.8
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.8
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.79
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.79
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.79
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.79
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.78
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.78
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.78
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.78
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.77
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.77
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.76
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.75
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.74
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.73
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.68
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.68
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.66
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.65
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.65
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.64
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.64
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.64
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.63
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.62
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.62
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.61
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.61
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.61
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.61
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.6
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.6
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.6
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.59
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.59
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.59
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.59
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.58
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.58
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.58
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.58
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.58
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.58
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.57
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.57
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.57
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.56
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.55
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.55
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.55
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.55
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.54
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.54
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.54
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.53
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.53
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.53
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.53
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.53
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.53
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.53
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.53
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.51
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.51
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.51
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.5
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.5
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.49
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.48
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.48
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.48
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.48
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.47
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.45
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.44
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.44
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.43
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.43
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.43
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.42
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.42
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.42
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.41
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.41
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.41
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.41
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.4
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.4
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.39
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.38
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.38
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.36
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.36
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.35
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.32
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.29
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.28
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.28
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.22
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.21
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.17
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.15
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.02
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.97
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	98.65
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	98.37
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	98.26
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	98.08
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	98.01
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	96.0
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	93.29

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=168.29  Aligned_cols=145  Identities=14%  Similarity=0.205  Sum_probs=117.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK   75 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~   75 (184)
                      |.++|++||+|.+++++.     .++|+|||+|.+.++|..|+.. ++..+.++.+.+...........           
T Consensus        23 L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------   90 (183)
T d1u1qa_          23 LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQR-----------   90 (183)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCCTTGGGS-----------
T ss_pred             HHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHh-cCCcccccchhhhhhhhcccccc-----------
Confidence            578999999999999886     3578999999999999999964 56667788877765432211100           


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274         76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~  150 (184)
                                  +      ....+.++|||+|||..+|+++|+++|+.|| .|..+.+...     ++|+|||+|.+.++
T Consensus        91 ------------~------~~~~~~~~i~V~~lp~~~te~~L~~~f~~~G-~v~~~~i~~~~~~~~~~g~~fV~f~~~e~  151 (183)
T d1u1qa_          91 ------------P------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDS  151 (183)
T ss_dssp             ------------T------TTTCCCSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred             ------------c------ccccccceeEEccCCCcCCHHHHhhhhccCC-ceeeeeeecccccCccceeEEEEECCHHH
Confidence                        0      0111567899999999999999999999999 9999988752     25799999999999


Q ss_pred             HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        151 AITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      |.+|++ ++|..+.| +.|+|.++.++.
T Consensus       152 A~~Al~-~~~~~~~G-~~i~V~~A~~k~  177 (183)
T d1u1qa_         152 VDKIVI-QKYHTVNG-HNCEVRKALSKQ  177 (183)
T ss_dssp             HHHHHT-SSCEEETT-EEEEEEECCCHH
T ss_pred             HHHHHH-hCCCeECC-EEEEEEecCCcc
Confidence            999997 79999999 899999987653

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=137.26  Aligned_cols=84  Identities=63%  Similarity=0.912  Sum_probs=74.3

Q ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeec-CCCCeEE
Q psy17274         93 FQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQL-SEQSHLR  170 (184)
Q Consensus        93 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i-~g~~~l~  170 (184)
                      ...+.||+++|||+|||+++|+++|+++|++|| .|..+.+.. +++++|||+|++.++|.+|+..|||+.+ +| ++|+
T Consensus         3 ~~~~~pPs~tL~V~NLp~~~te~~l~~~F~~~G-~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g-~~l~   80 (88)
T d2adca2           3 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN-HHLR   80 (88)
T ss_dssp             GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSS-CBCE
T ss_pred             ccCCCCCCCEEEEECCCCCCCHHHHHHHhhccC-CEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCC-CEEE
Confidence            345667999999999999999999999999999 777666554 4589999999999999999999999999 48 8999


Q ss_pred             EEecCccc
Q psy17274        171 VSFSKSNI  178 (184)
Q Consensus       171 v~~~~~~~  178 (184)
                      |+|||+++
T Consensus        81 v~~sk~~i   88 (88)
T d2adca2          81 VSFSKSTI   88 (88)
T ss_dssp             EEECSSCC
T ss_pred             EEeCCCCC
Confidence            99999763

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.91  E-value=6e-24  Score=132.76  Aligned_cols=78  Identities=19%  Similarity=0.409  Sum_probs=72.4

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ||+++|||+|||..+|+++|+++|++|| .|..+++.+..+++|||+|.+.++|..|+..|||+.+.++++|+|+||+.
T Consensus         6 pP~~tl~V~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~akk   83 (83)
T d2b0ga1           6 PPNQILFLTNLPEETNEMMLSMLFNQFP-GFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK   83 (83)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTST-TEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHhhhccCc-cEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEecC
Confidence            4899999999999999999999999999 99999999877899999999999999999999999995327999999973

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=133.82  Aligned_cols=78  Identities=14%  Similarity=0.368  Sum_probs=73.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||..+++++|+++|++|| .|.+|++.+ ++|+|||+|.+.++|..|+..|||..++| +.|+|+|+++.+
T Consensus        17 ~~~~l~v~nL~~~~te~~L~~~F~~fG-~i~~v~i~~-~kg~afV~f~~~~~A~~Ai~~l~~~~i~g-~~l~v~~ak~~p   93 (96)
T d1x4ga1          17 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEG-HVVKCYWGKESP   93 (96)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEECCCCCC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHhC-CceEEEEEe-cceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcCCCC
Confidence            467899999999999999999999999 999999985 79999999999999999999999999999 899999999865


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        94 ~   94 (96)
T d1x4ga1          94 D   94 (96)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.88  E-value=1.1e-22  Score=126.72  Aligned_cols=75  Identities=17%  Similarity=0.351  Sum_probs=69.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      +++|||+|||+++|+++|+++|++|| .|.++++..+     .+++|||+|.+.++|.+|++.|||..++| ++|+|+|+
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g-~~l~v~~a   79 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-KRLKVSYA   79 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhC-CcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECC-EEEEEEEc
Confidence            46799999999999999999999999 9999998752     26899999999999999999999999999 89999999


Q ss_pred             Cc
Q psy17274        175 KS  176 (184)
Q Consensus       175 ~~  176 (184)
                      ++
T Consensus        80 ~p   81 (82)
T d1b7fa1          80 RP   81 (82)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=127.36  Aligned_cols=79  Identities=19%  Similarity=0.332  Sum_probs=72.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.++|||+|||+++|+++|+++|++|| .|.+|++..+   .+++|||+|.+.++|..|+..|||..+.| +.|+|.|++
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g-~~i~v~~a~   84 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG-KEVKVNWAT   84 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-CceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECC-EEEEEEEcC
Confidence            567899999999999999999999999 9999998752   36899999999999999999999999999 899999998


Q ss_pred             cccc
Q psy17274        176 SNIQ  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      ++..
T Consensus        85 ~~~~   88 (90)
T d2cqia1          85 TPSS   88 (90)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            7643

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=132.68  Aligned_cols=76  Identities=26%  Similarity=0.370  Sum_probs=71.4

Q ss_pred             CCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        100 SPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       100 ~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      +++|||+|||+ .+|+++|+++|++|| .|.+|+|+++.+|+|||+|++.++|.+|++.|||..+.| +.|+|+|++.+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG-~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g-~~l~v~~s~~~   78 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKHQ   78 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS-SBCEEECCSCC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhcc-ccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEECCCC
Confidence            57899999965 699999999999999 999999998778999999999999999999999999999 89999999865

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-22  Score=124.98  Aligned_cols=74  Identities=16%  Similarity=0.363  Sum_probs=68.8

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++|||+|||+++++++|+++|++|| .|..+++..+     .+|+|||+|.+.++|..|++.|||..++| ++|+|+|++
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~Ak   80 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-KTIKVSYAR   80 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhC-CcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEee
Confidence            4699999999999999999999999 9999998752     25799999999999999999999999999 899999998


Q ss_pred             c
Q psy17274        176 S  176 (184)
Q Consensus       176 ~  176 (184)
                      +
T Consensus        81 P   81 (82)
T d1fxla1          81 P   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.9e-22  Score=126.98  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||..+|+++|+++|++|| .|.+|.+..+     .+|+|||+|.+.++|..|++.|||..++| ++|+|+|
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-r~i~V~~   83 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD-RIIRTDW   83 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHC-CcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            678999999999999999999999999 9999998753     25799999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        84 a~~~   87 (93)
T d1h2vz_          84 DAGF   87 (93)
T ss_dssp             ESCC
T ss_pred             cCCC
Confidence            8765

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.8e-22  Score=127.53  Aligned_cols=79  Identities=23%  Similarity=0.388  Sum_probs=73.0

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEecCc
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFSKS  176 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~~~  176 (184)
                      +|+++|||+|||+++++++|+++|++|| .|..+++.+ ++++|||+|.+.++|..|++.|||..|.|. ++|+|+|+++
T Consensus        15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~-~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhhc-ccceEeeec-cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            3789999999999999999999999999 999999885 789999999999999999999999999873 4899999987


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      ..
T Consensus        93 ~~   94 (97)
T d1whya_          93 GP   94 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2e-21  Score=126.17  Aligned_cols=81  Identities=22%  Similarity=0.293  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh--cCeecCCCCeEEEEe
Q psy17274         96 IYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM--HNHQLSEQSHLRVSF  173 (184)
Q Consensus        96 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l--ng~~i~g~~~l~v~~  173 (184)
                      ..+|+++|||+|||+.+|+++|+++|++|| .|.++.+.+ .+++|||+|++.++|..|+..|  ++..++| ++|+|+|
T Consensus        11 ~~~ps~~l~v~nlp~~~te~~l~~~F~~fG-~I~~~~~~~-~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g-~~l~v~~   87 (104)
T d1wexa_          11 KVSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG-QQAFFNY   87 (104)
T ss_dssp             CCCCCSEEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS-SBCEEEE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHhhhhcc-cceEEEEEe-cceeEEEEeCCHHHHHHHHHHHcCCCcEEee-EEEEEEE
Confidence            334899999999999999999999999999 999999874 8999999999999999999988  4567889 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        88 s~~~~~   93 (104)
T d1wexa_          88 STSKRI   93 (104)
T ss_dssp             CSSSSC
T ss_pred             cCCCcc
Confidence            987643

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-22  Score=127.89  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=71.7

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |++++|||+|||+++++++|+++|++|| .|.++++..+     .+|+|||+|.+.++|..|+..|||..++| ++|+|.
T Consensus        16 p~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~~i~V~   93 (102)
T d2cpza1          16 PEGANLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-KRLKVQ   93 (102)
T ss_dssp             STTCCEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhc-cccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence            4677899999999999999999999999 8888888752     25799999999999999999999999999 899999


Q ss_pred             ecCccc
Q psy17274        173 FSKSNI  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      |+++..
T Consensus        94 ~a~~k~   99 (102)
T d2cpza1          94 LKRSKN   99 (102)
T ss_dssp             CCCCSC
T ss_pred             EeCCCC
Confidence            998753

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.4e-22  Score=123.46  Aligned_cols=78  Identities=19%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ..++|||+|||+++|+++|+++|++|| .|..+.+. ..+|+|||+|.++++|..|+..|||..++| +.|+|+|++++.
T Consensus         7 ~~k~l~V~nLp~~~te~~l~~~F~~~g-~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g-~~i~V~~akP~~   83 (86)
T d2cpda1           7 SVKILYVRNLMLSTSEEMIEKEFNNIK-PGAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKVLDG-SPIEVTLAKPVD   83 (86)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTS-TTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEEETT-EEEEEECCCCCC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHhhcccc-eeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCCCEECC-EEEEEEeccCCC
Confidence            568999999999999999999999999 77777665 478999999999999999999999999999 899999998764


Q ss_pred             c
Q psy17274        179 Q  179 (184)
Q Consensus       179 ~  179 (184)
                      .
T Consensus        84 ~   84 (86)
T d2cpda1          84 K   84 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9.1e-22  Score=121.25  Aligned_cols=73  Identities=22%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .|||+|||+.+++++|+++|++|| .|.++++..+    .+|+|||+|.+.++|..|++.|||..++| ++|+|+++.+
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G-~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g-~~l~V~~a~S   78 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-RPMNIQLVTS   78 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHS-CEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC-CCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEeeC
Confidence            499999999999999999999999 9999999752    36899999999999999999999999999 8999999864

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.6e-22  Score=125.66  Aligned_cols=77  Identities=22%  Similarity=0.355  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|||+|||+++|+++|+++|++|| .|.++++..     ..+|+|||+|.+.++|..|++.|||..++| ++|+|.|
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g-~~l~v~~   81 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL   81 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCC-eEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            467899999999999999999999999 999999875     236899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++++
T Consensus        82 a~p~   85 (89)
T d2cqba1          82 AKPM   85 (89)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            9865

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4e-22  Score=126.21  Aligned_cols=77  Identities=18%  Similarity=0.345  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||.++|+++|+++|++|| .|.++++..+     .+|+|||+|.+.++|.+|++.|||..++| +.|+|+|
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~i~v~~   84 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-LILNVEW   84 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhc-ccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECC-EEEEEEe
Confidence            567899999999999999999999999 9999998752     25799999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++++
T Consensus        85 akp~   88 (90)
T d2cq0a1          85 AKPS   88 (90)
T ss_dssp             SSCC
T ss_pred             eeCC
Confidence            9865

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-22  Score=123.73  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .|||+|||+.+|+++|+++|++|| .|.+++|..+     ++|+|||+|.++++|..|++.|||..++| ++|+|+|++.
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~g-r~i~v~~a~~   79 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG-KPVRIMWSQR   79 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETT-EECEEEECCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhC-CEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECC-EEEEEEEeCC
Confidence            599999999999999999999999 9999999862     25899999999999999999999999999 8999999864

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.5e-22  Score=125.17  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +.++|||+|||..+|+++|+++|++|| .|.++++..+     .+|+|||+|.+.++|..|++.|||+.++| +.|+|.|
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~   85 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-KPIRVNK   85 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-CBCEEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhC-CccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            467899999999999999999999999 9999998752     36899999999999999999999999999 8999999


Q ss_pred             cCccccc
Q psy17274        174 SKSNIQD  180 (184)
Q Consensus       174 ~~~~~~~  180 (184)
                      +++.-.+
T Consensus        86 A~~~~~n   92 (93)
T d1x5ua1          86 ASAHNKN   92 (93)
T ss_dssp             TTTTSCC
T ss_pred             cCCCCCC
Confidence            9876543

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.4e-22  Score=124.48  Aligned_cols=76  Identities=25%  Similarity=0.451  Sum_probs=71.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      .++|||+|||.++++++|+++|++|| .|.+|++. +++++|||+|++.++|..|+..|||..+.| ++|+|+|+....
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~i~~~-~~k~~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~V~~A~~~~   83 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRG-KQLRVRFACHSA   83 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTT-BCCEEEESSCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhC-CceEeeee-cccceEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEECCCcC
Confidence            45799999999999999999999999 99999988 479999999999999999999999999999 899999998764

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-21  Score=123.48  Aligned_cols=78  Identities=17%  Similarity=0.353  Sum_probs=71.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ..++|||+|||+.+++++|+++|++|| .|..|++..+   .+++|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g-~~l~V~~A~   87 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNAT   87 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcc-eeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECC-EEEEEEecC
Confidence            456799999999999999999999999 9999998753   36899999999999999999999999999 899999998


Q ss_pred             ccc
Q psy17274        176 SNI  178 (184)
Q Consensus       176 ~~~  178 (184)
                      ++.
T Consensus        88 ~r~   90 (93)
T d2cq3a1          88 ARV   90 (93)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            763

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.2e-22  Score=122.29  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=70.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      .+++|||+|+|  +|+++|+++|++|| .|.++++. +.+++|||+|.+.++|..|+..|||..++| ++|+|+|+++++
T Consensus         4 ~~~ti~V~~~~--~te~~L~~~F~~~G-~I~~v~~~-~~~~~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~V~~a~~~P   78 (79)
T d2bz2a1           4 KGNTLYVYGED--MTPTLLRGAFSPFG-NIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARKQP   78 (79)
T ss_dssp             CCCEEEEECSS--CCHHHHHHHHSTTC-CCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSS-CBCEEEECCSSC
T ss_pred             CCCEEEEECCC--CCHHHHHHHHhccC-ccceeeec-cCCCEEEEEEcccHHHHHHHHHhCCCEECC-EEEEEEEecCCC
Confidence            46799999986  89999999999999 99999987 478999999999999999999999999999 899999998764

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=6.9e-22  Score=124.57  Aligned_cols=77  Identities=18%  Similarity=0.340  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      .+.+|||+|||..+|+++|+++|++|| .|.+|++..+     .+|+|||+|.+.++|..|+..|||..+.| +.|+|+|
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g-~~l~V~~   83 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDW   83 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-CcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            467899999999999999999999999 9999998753     25899999999999999999999999999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +.++
T Consensus        84 a~~k   87 (88)
T d1rk8a_          84 CFVK   87 (88)
T ss_dssp             SEEC
T ss_pred             ecCC
Confidence            9764

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.1e-21  Score=125.20  Aligned_cols=78  Identities=21%  Similarity=0.398  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v  171 (184)
                      ++++|||+|||+.+++++|+++|++|| .|.++++..+      .+|+|||+|.+.++|.+|+..| ||..+.| ++|+|
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~G-r~l~V   84 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG-RRLVL   84 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS-CBCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECC-EEEEE
Confidence            567799999999999999999999999 9999998642      3689999999999999999998 8999999 89999


Q ss_pred             EecCccc
Q psy17274        172 SFSKSNI  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      .|++...
T Consensus        85 ~~A~~~~   91 (94)
T d2cpha1          85 EWADSEV   91 (94)
T ss_dssp             EECCCCC
T ss_pred             EEcCCCC
Confidence            9998764

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-21  Score=123.80  Aligned_cols=79  Identities=25%  Similarity=0.350  Sum_probs=72.2

Q ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh--cCeecCCCCeEEEEecC
Q psy17274         98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM--HNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l--ng~~i~g~~~l~v~~~~  175 (184)
                      +|+++|||+|||+++++++|+++|++|| .|..+++.+ ++++|||+|.+.++|..|++.|  ++..+.| ++|+|.||+
T Consensus         6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~-~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g-~~l~v~~sk   82 (88)
T d2cq1a1           6 APSRVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRN-QPIYIQYSN   82 (88)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccc-ccccccccc-cceEEEEEeCCHHHHHHHHHHHccCCCccCC-CEEEEEECC
Confidence            3899999999999999999999999999 999998874 7899999999999999999966  5779999 899999998


Q ss_pred             cccc
Q psy17274        176 SNIQ  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      .+.-
T Consensus        83 ~~~l   86 (88)
T d2cq1a1          83 HKEL   86 (88)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            7643

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=9.1e-22  Score=122.17  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=67.4

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      ++|||+|||+++|+++|+++|++|| .|..+.++.     ..+|+|||+|.+.++|.+|++.|||+.++| ++|+|.|++
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g-~~i~V~~a~   79 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDIN-VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-YTLVTKVSN   79 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTT-CCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhC-cEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcc
Confidence            5899999999999999999999999 888777764     236899999999999999999999999999 899999997


Q ss_pred             c
Q psy17274        176 S  176 (184)
Q Consensus       176 ~  176 (184)
                      +
T Consensus        80 P   80 (81)
T d2ghpa1          80 P   80 (81)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-22  Score=124.93  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ..+|||+|||+++|+++|+++|++|| .|..+++..+   ++|+|||+|++.++|.+|++.|||..++| +.|+|+++++
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~i~V~~a~~   85 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFKS   85 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTS-CEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETT-EEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence            45799999999999999999999999 9999998753   36899999999999999999999999999 8999999986


Q ss_pred             cc
Q psy17274        177 NI  178 (184)
Q Consensus       177 ~~  178 (184)
                      +.
T Consensus        86 ~~   87 (89)
T d1cvja2          86 RK   87 (89)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-21  Score=124.22  Aligned_cols=77  Identities=16%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      ++++|||+|||+++|+++|+++|++|| .|..+.+...  .+++|||+|++.++|..||+.|||+.+.| ++|+|+|++.
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g-~~l~V~~a~~   90 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-YRLRVEFPRS   90 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT-EECEEECCCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCC-ceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEeccC
Confidence            567899999999999999999999999 8998887643  47899999999999999999999999999 8999999986


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus        91 ~   91 (95)
T d1x4aa1          91 G   91 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-21  Score=128.51  Aligned_cols=77  Identities=19%  Similarity=0.304  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+++|||+|||..+|+++|+++|++|| .|.+|++...  .+|+|||+|.+.++|..|++.|||+.|.| +.|+|.|+..
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~~G-~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~g-r~l~V~~a~~   83 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGKYG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCN-RYLVVLYYNA   83 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECCH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcC-CeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcCC
Confidence            467999999999999999999999999 9999998753  47999999999999999999999999999 8999999875


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      .
T Consensus        84 ~   84 (114)
T d2f9da1          84 N   84 (114)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.5e-21  Score=128.28  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      .+++|||+|||+.+++++|+++|++|| .|..|.+. +.+++|||+|.+.++|.+|++.|||..+.| ++|+|.|++...
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG-~I~~v~l~-~~kg~afV~f~~~~~A~~A~~~lng~~~~g-r~l~v~~a~~~~   85 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFG-SLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHH-VPLYLEWAPIGV   85 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEEEETTT
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccC-CccEEEee-ccCceEEEEEcCHHHHHHHHHHHcCCccCC-CeEEEEECCCCc
Confidence            457899999999999999999999999 99999875 588999999999999999999999999999 899999987653

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=122.34  Aligned_cols=76  Identities=21%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .|||+|||..+|+++|+++|++|| +|.++++..+     ++++|||+|.++++|..|+..|||..++| ++|+|.|++.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G-~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g-~~l~V~~A~~   80 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-KKLLVQRASV   80 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSS-CEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSS-SCCEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcC-ccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEECCC
Confidence            599999999999999999999999 9999999752     37999999999999999999999999999 8999999987


Q ss_pred             ccc
Q psy17274        177 NIQ  179 (184)
Q Consensus       177 ~~~  179 (184)
                      ...
T Consensus        81 ~~~   83 (85)
T d2u2fa_          81 GAK   83 (85)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.6e-21  Score=122.20  Aligned_cols=74  Identities=27%  Similarity=0.402  Sum_probs=67.8

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      |||+|||.++|+++|+++|++|| .|.++++..+        ++|+|||+|.+.++|..|++.|||..++| +.|+|.|+
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g-~~i~V~~a   78 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-HKLEVRIS   78 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-EECEEECS
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhC-CccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence            79999999999999999999999 9999998751        25799999999999999999999999999 89999998


Q ss_pred             Cccc
Q psy17274        175 KSNI  178 (184)
Q Consensus       175 ~~~~  178 (184)
                      +...
T Consensus        79 ~~~~   82 (85)
T d2cpfa1          79 ERAT   82 (85)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            7643

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.85  E-value=1.6e-21  Score=124.87  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||.++|+++|+++|++|| .|..++.....+++|||+|.+.++|.+|++.|||..++| ++|+|.|+.++.
T Consensus        15 ~~~~l~V~nL~~~~te~~l~~~F~~~g-~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g-r~i~V~~a~~k~   92 (96)
T d1fjca_          15 AARTLLAKNLSFNITEDELKEVFEDAL-EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTGEKG   92 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEE-EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-EEEEEEECSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcc-cceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECC-EEEEEEEeCCCC
Confidence            578999999999999999999999999 888777654568999999999999999999999999999 899999998764

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.7e-21  Score=122.93  Aligned_cols=78  Identities=18%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++++|||+|||+.+|+++|+++|++|| .|.++++..+     .+|+|||+|.+.++|..|++.|||+.++| ++|+|.+
T Consensus         7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-r~i~V~~   84 (99)
T d1whwa_           7 GSGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-RMLHVLP   84 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-CEEEEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcC-CceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            456799999999999999999999999 9999998642     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++.+.
T Consensus        85 a~~~~   89 (99)
T d1whwa_          85 STIKK   89 (99)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            98764

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=128.03  Aligned_cols=81  Identities=28%  Similarity=0.338  Sum_probs=71.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-CCceEEEEeCCHHHHHHHHHHhcCeecC--CCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-DRKMALLQLDSIEEAITALIQMHNHQLS--EQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~--g~~~l~v~~~~  175 (184)
                      |..+|||+|||+++|+++|+++|++|| .|.++.+..+ .+|+|||+|.++++|..|+..|||..+.  | +.|+|.|++
T Consensus         6 ~~~~v~V~NL~~~vte~~L~~~F~~~G-~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~-~~l~v~~s~   83 (108)
T d2adba1           6 PVLRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFSK   83 (108)
T ss_dssp             CEEEEESCSCCSTTHHHHHHHHHTTTS-CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTC-CCCEEEECS
T ss_pred             CeEEEEEeCcCCCCCHHHHHHHHccCC-cEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCC-cEEEEEecC
Confidence            566789999999999999999999999 9999988763 4789999999999999999999999994  5 799999998


Q ss_pred             cccccc
Q psy17274        176 SNIQDI  181 (184)
Q Consensus       176 ~~~~~~  181 (184)
                      ....++
T Consensus        84 ~~~~~~   89 (108)
T d2adba1          84 LTSLNV   89 (108)
T ss_dssp             SCSCCC
T ss_pred             Cccccc
Confidence            764443

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=123.44  Aligned_cols=78  Identities=22%  Similarity=0.402  Sum_probs=70.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |+++|||+|||+.++++||+    ++|++|| .|.+|++...  .+|+|||+|++.++|..|++.|||..+.| +.|+|.
T Consensus         2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G-~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g-~~l~v~   79 (91)
T d1nu4a_           2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRIQ   79 (91)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS-CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhcccc-cccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence            78899999999999999986    4689999 9999987642  47999999999999999999999999999 899999


Q ss_pred             ecCccc
Q psy17274        173 FSKSNI  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      |++...
T Consensus        80 ~ak~~~   85 (91)
T d1nu4a_          80 YAKTDS   85 (91)
T ss_dssp             ECSSCC
T ss_pred             EeCCCc
Confidence            998764

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.7e-21  Score=119.40  Aligned_cols=71  Identities=21%  Similarity=0.384  Sum_probs=65.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      |+++|||+|||+.+|+++|+++|++|| .|.++++..+     .+|+|||+|.+.++|..|+..|||..++| ++|+|
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-r~i~V   83 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRV   83 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC-CCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECC-EEeEC
Confidence            678899999999999999999999999 9999998752     25799999999999999999999999999 89987

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-21  Score=121.58  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=67.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe-ecCCCCeEEEEecCccc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH-QLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~-~i~g~~~l~v~~~~~~~  178 (184)
                      +|||+|||+++|+++|+++|++|| .|..+++.. .+|+|||+|.+.++|..|++.|||. .++| ++|+|.|+.++.
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~-~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G-~~i~V~~a~~k~   77 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRK-LPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGKVELHG-KIMEVDYSVSKK   77 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTT-CCCSSCEEE-ETTEEEECCSCHHHHHHHHHHHTTTCEETT-EECEEEECCCCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC-cEEEeEEec-ccceEEEEECCHHHHHHHHHHhCCCeEECC-EEEEEEEcCCcC
Confidence            599999999999999999999999 887777664 7899999999999999999999996 6999 899999998754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=127.29  Aligned_cols=89  Identities=65%  Similarity=1.058  Sum_probs=80.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS   80 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+++|++||+|.+|++++.++|+|||+|.+.++|.+|++.|||..+.|++|+|+|++......+.......+..+++..+
T Consensus        20 L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~s   99 (109)
T d2adca1          20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS   99 (109)
T ss_dssp             HHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTC
T ss_pred             HHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCCCccccCCCcccccCCC
Confidence            67999999999999999888999999999999999999999999999999999999988777776666667778889998


Q ss_pred             CCCCCCCCC
Q psy17274         81 PLHRFKKPG   89 (184)
Q Consensus        81 ~~~~~~~~~   89 (184)
                      +.+|+..|+
T Consensus       100 ~~~rf~~p~  108 (109)
T d2adca1         100 PLHRFKKPG  108 (109)
T ss_dssp             SSCCCCSTT
T ss_pred             CCCCCCCCC
Confidence            889988765

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.1e-21  Score=121.04  Aligned_cols=76  Identities=18%  Similarity=0.331  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274         99 PSPTLHLSNIPASVT-EDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV  171 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t-~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v  171 (184)
                      ..++|||+|||++++ +++|+++|++|| .|.+++|...      .+|+|||+|.+.++|..|++ |||+.++| +.|+|
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G-~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~g-r~l~V   79 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFG-SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGN-REISV   79 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGS-CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEETT-EEEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhh-hccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEECC-EEEEE
Confidence            367899999999876 566999999999 9999998542      36899999999999999996 99999999 89999


Q ss_pred             EecCcc
Q psy17274        172 SFSKSN  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      +|++++
T Consensus        80 ~~a~~k   85 (86)
T d2ghpa3          80 SLADKK   85 (86)
T ss_dssp             EECCCC
T ss_pred             EEcCCC
Confidence            999865

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.8e-21  Score=120.78  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh--cCeecCCCCeEEEEec
Q psy17274         98 PPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM--HNHQLSEQSHLRVSFS  174 (184)
Q Consensus        98 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l--ng~~i~g~~~l~v~~~  174 (184)
                      .++++|||+|||.. +|++||.++|++|| .|.++.+.+ ++++|||+|++.++|..|++.|  ++..+.| ++|+|+||
T Consensus         6 ~~sr~v~v~nl~~~~~t~~eL~~lF~~fG-~I~~i~i~~-~k~~afV~f~~~~~A~~A~~~l~~~~~~~~g-r~l~V~~s   82 (89)
T d1x4da1           6 ETRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFG-KPVRVHLS   82 (89)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEEE
T ss_pred             CCCcEEEEECCCCCcCCHHHHHHHHHhhC-CeEEEEeec-cceEEEEEEcchhhHHHHHHHHhhCCCccCC-ceEEEEEC
Confidence            37899999999986 88999999999999 999999985 7899999999999999999966  6778999 89999999


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ++.
T Consensus        83 ~~~   85 (89)
T d1x4da1          83 QKY   85 (89)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            854

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.4e-21  Score=119.01  Aligned_cols=74  Identities=22%  Similarity=0.404  Sum_probs=66.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEe
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSF  173 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~  173 (184)
                      +++|||+|||+.+|+++|+++|++|| .|.+++++.+     .+|+|||+|.+.++|..|++.|||..+.|. ++|+|.|
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhC-CccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            56799999999999999999999999 9999999752     257999999999999999999999999983 4699998


Q ss_pred             c
Q psy17274        174 S  174 (184)
Q Consensus       174 ~  174 (184)
                      |
T Consensus        85 A   85 (85)
T d1fxla2          85 A   85 (85)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.6e-21  Score=120.87  Aligned_cols=78  Identities=15%  Similarity=0.357  Sum_probs=70.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|||+|||+++|+++|+++|++|| .|..+.+...     .+|+|||+|.+.++|..|+..|||+.++| ++|+|.+
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g-~~l~V~~   81 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-RQIRVDQ   81 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-CCCEEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccc-cccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            356799999999999999999999999 8999987652     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      +.++.
T Consensus        82 a~~~~   86 (90)
T d1x5sa1          82 AGKSS   86 (90)
T ss_dssp             EECCC
T ss_pred             cCCCC
Confidence            87654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-20  Score=115.32  Aligned_cols=72  Identities=22%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      |||+|||+++++++|+++|++||  +..+.+. ..+++|||+|.+.++|.+|+..|||..++| ++|+|+|++...
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g--~~~~~~~-~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g-~~l~V~~a~~d~   72 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE--LKYCFVD-KYKGTAFVTLLNGEQAEAAINTFHQSRLRE-RELSVQLQPTDA   72 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC--EEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEECCSTT
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc--ccceeec-ccceeEEEEECCHHHHHHHHHHhCCccCCC-CEEEEEEeCCCC
Confidence            79999999999999999999999  4455554 589999999999999999999999999999 899999998653

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.84  E-value=2.7e-20  Score=126.91  Aligned_cols=78  Identities=21%  Similarity=0.347  Sum_probs=71.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ..++|||+|||.++|+++|+++|++|| .|.+|+|+.+     .+|+|||+|.+.++|..|++.|||..|+| ++|+|.|
T Consensus        41 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~g-r~l~V~~  118 (139)
T d1u6fa1          41 VLRNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN-KRLKVAL  118 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS-CEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence            457899999999999999999999999 9999998752     36899999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++...
T Consensus       119 a~~~~  123 (139)
T d1u6fa1         119 AASGH  123 (139)
T ss_dssp             SSCCC
T ss_pred             cCCCC
Confidence            97653

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-21  Score=121.60  Aligned_cols=76  Identities=17%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||++++++||+++|++||.  ..+.+. ..+++|||+|.+.++|..|+..|||+.+.| ++|+|+|++...
T Consensus         4 ~s~~i~V~nLp~~~t~~~l~~lF~~~G~--~~~~~~-~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G-~~l~V~~a~~~~   79 (88)
T d1wg1a_           4 GSSGILVKNLPQDSNCQEVHDLLKDYDL--KYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-KDLIVQLQPTDA   79 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSSCC--CCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred             CCCEEEEeCCCCccChHHHHHHHHhcCc--eeeeee-ccCCceEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcCCCC
Confidence            4678999999999999999999999993  234333 478999999999999999999999999999 899999998653

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.5e-21  Score=122.29  Aligned_cols=74  Identities=14%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CCCEEEEeCCC-CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274         99 PSPTLHLSNIP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus        99 ~~~~l~v~nlp-~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .+.+|||+||| ..+++++|+++|++|| .|.++++   .+++|||+|++.++|.+|++.|||+.+.| ++|+|.|++.+
T Consensus        14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G-~i~~~~i---~rg~aFV~f~~~~~A~~Ai~~lng~~~~g-~~l~V~~a~~~   88 (98)
T d1wf2a_          14 MNSRVFIGNLNTLVVKKSDVEAIFSKYG-KIVGCSV---HKGFAFVQYVNERNARAAVAGEDGRMIAG-QVLDINLAAEP   88 (98)
T ss_dssp             CCCCEEEEEECTTTCCHHHHHHSSTTSS-CEEEEEE---ETEEEEEEESSHHHHHHHHHTTTTCEETT-EECEEEETTSC
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHhhcC-CEEEEEE---eCCeEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCCC
Confidence            45679999997 5788999999999999 9999987   46999999999999999999999999999 89999999865

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.83  E-value=1.1e-20  Score=118.29  Aligned_cols=75  Identities=23%  Similarity=0.378  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~  172 (184)
                      .+++|||+|||.++++++|+++|++|| .|..++++.+     ++|+|||+|.+.++|.+|++.|||..+.|. ++|+|.
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G-~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~   83 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR   83 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhC-CEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEE
Confidence            456799999999999999999999999 9999998752     258999999999999999999999999763 689999


Q ss_pred             ec
Q psy17274        173 FS  174 (184)
Q Consensus       173 ~~  174 (184)
                      |+
T Consensus        84 ~A   85 (85)
T d1b7fa2          84 LA   85 (85)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-21  Score=125.05  Aligned_cols=78  Identities=27%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |+++|||+|||..+++++|+++|++|| .|..+.+..     +.+++|||+|.+.++|..|++.|||..+.| ++|+|+|
T Consensus        17 ps~tl~V~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~   94 (102)
T d2cpxa1          17 PNKVLYLKNLSPRVTERDLVSLFARFQ-EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG-KILVIEF   94 (102)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHH-HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS-CBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcc-ceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECC-EEEEEEe
Confidence            788999999999999999999999999 887776653     347999999999999999999999999999 8999999


Q ss_pred             cCccc
Q psy17274        174 SKSNI  178 (184)
Q Consensus       174 ~~~~~  178 (184)
                      ++++-
T Consensus        95 ak~k~   99 (102)
T d2cpxa1          95 GKNKK   99 (102)
T ss_dssp             CCCCS
T ss_pred             CCCcc
Confidence            99764

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=117.70  Aligned_cols=73  Identities=18%  Similarity=0.348  Sum_probs=65.3

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEE-EEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGF-KFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v-~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      |||+|||+++|+++|+++|++|| .|.++ ++..     +++|+|||+|.+.++|.+|++.|||..++| ++|+|+|+.+
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~g-r~l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-RPITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-EECEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhC-ceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECC-EEEEEEEecC
Confidence            79999999999999999999999 77554 5553     236899999999999999999999999999 8999999876


Q ss_pred             c
Q psy17274        177 N  177 (184)
Q Consensus       177 ~  177 (184)
                      +
T Consensus        79 k   79 (83)
T d1x5ta1          79 K   79 (83)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.8e-21  Score=120.37  Aligned_cols=72  Identities=15%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN  177 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~  177 (184)
                      .|||+|||+++|+++|+++|++|| .|.++++.  ..|+|||+|.+.++|.+||..|||..+.| +.|+|.|.+..
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G-~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~i~v~~~~~~   73 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAG-DVCYADVY--RDGTGVVEFVRKEDMTYAVRKLDNTKFRS-HEGETAYIRVK   73 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGS-CEEEEEEC--TTSEEEEEESSHHHHHHHHHHHTTCBCCC-TTSCCCBCEEE
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhc-cccccccc--ccceeeEEeCCHHHHHHHHHHhCCCEECC-cEeEEeEEecC
Confidence            599999999999999999999999 99999986  45899999999999999999999999999 89999887654

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.8e-21  Score=122.90  Aligned_cols=76  Identities=26%  Similarity=0.452  Sum_probs=69.9

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||.++|+++|+++|++|| .|.+|++..+     .+|+|||+|.+.++|..|++.|||..+.| +.|+|.|+
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G-~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-~~i~V~~a   85 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-RALRVDNA   85 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-SCBEEEET
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccc-cccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECC-EEEEEEEC
Confidence            46899999999999999999999999 9999998752     25799999999999999999999999999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ...
T Consensus        86 ~~~   88 (104)
T d1p1ta_          86 ASE   88 (104)
T ss_dssp             TCT
T ss_pred             CCC
Confidence            765

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.1e-20  Score=118.06  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      +..+|||+|||+++++++|+++|++|| .|..+++.  .+++|||+|.+.++|.+||+.|||..+.| +.|+|.|.+...
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G-~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~lng~~~~g-~~i~v~~~~~~~   89 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAG-DVCYADVQ--KDGMGMVEYLRKEDMEYALRKLDDTKFRS-HEGETSYIRVYP   89 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSS-CEEEEEEE--TTTEEEEEESSHHHHHHHHHHHSSEEEEC-TTSCEEEEEEEC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhc-cccccccc--ccceEEEEECCHHHHHHHHHHhCCCEeCC-eEEEEEEEecCC
Confidence            456799999999999999999999999 99999886  56899999999999999999999999999 899999987654

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.2e-20  Score=119.28  Aligned_cols=76  Identities=16%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHH--HhcCeecCCCCeEEEEecC
Q psy17274         99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI--QMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus        99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~--~lng~~i~g~~~l~v~~~~  175 (184)
                      ++++|||+|||. .+|+++|+++|++|| .|.++.+.+ ++++|||+|++.++|..|++  .+++..++| +.|+|+||+
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG-~V~~v~~~~-~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~g-r~l~V~~s~   93 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQG-RCVKVDLSE   93 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS-SCCEEEEEC
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhcccc-ceeEEEEee-cCCcEEEEecchHHHHHHHHHHhcCCceECC-EEEEEEEcC
Confidence            678999999997 589999999999999 999999884 78999999999999999998  578889999 899999997


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      ..
T Consensus        94 ~~   95 (99)
T d1x4fa1          94 KY   95 (99)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.82  E-value=5.3e-21  Score=121.11  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ...+|||+|||+++|+++|+++|++|| .|..+++..    +++|+|||+|.+.++|.+||+ |||..++| +.|+|.++
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G-~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g-~~i~V~~a   88 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEKP   88 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHH-HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT-EEEEEECC
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCC-cEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-cCCcEECC-EEEEEEec
Confidence            356899999999999999999999999 887777653    457999999999999999996 99999999 89999999


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +.+
T Consensus        89 k~k   91 (91)
T d1fjeb1          89 KGR   91 (91)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            863

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.8e-21  Score=119.92  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI  178 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~  178 (184)
                      ++++|||+|||+++|+++|+++|++|| .|..+++....+++|||+|++.++|.+|+.  +++.|.| ++|+|.+++++.
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~~~~~~~gfafV~f~~~~~a~~a~~--~~~~i~g-~~l~v~~a~~k~   79 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYG-DVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKG-ISVHISNAEPKH   79 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTS-CCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETT-EEEEEECCCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-CceEEEEeeccCceEEEEECCHHHHHHHHh--CCCEECC-EEeEEEeCCCCC
Confidence            578999999999999999999999999 999998877778999999999999999985  8999999 899999997653

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=120.40  Aligned_cols=75  Identities=16%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||..+|+++|+++|++|| .|.+|+++.+     ++|+|||+|.+.++|.+|+. |||..+.| +.|+|.++
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G-~~l~V~~a   94 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLG-VPIIVQAS   94 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETT-EEEEEEEH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCC-eEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECC-EEEEEEEC
Confidence            46899999999999999999999999 9999999862     37899999999999999995 99999999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ++.
T Consensus        95 ~~~   97 (101)
T d2cq4a1          95 QAE   97 (101)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            653

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1e-19  Score=116.77  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=69.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhc------CeecCCCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMH------NHQLSEQS  167 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~ln------g~~i~g~~  167 (184)
                      .+++|||+|||+++|+++|+++|++|| .|..+.+...     ++|+|||+|.+.++|..|++.||      |..+.| +
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~g-r   84 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-R   84 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-C
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccc-cceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECC-E
Confidence            467899999999999999999999999 8988888652     36899999999999999999987      788999 8


Q ss_pred             eEEEEecCcc
Q psy17274        168 HLRVSFSKSN  177 (184)
Q Consensus       168 ~l~v~~~~~~  177 (184)
                      .|+|+|++++
T Consensus        85 ~l~v~~a~~k   94 (98)
T d1x4ha1          85 QLKVDLAVTR   94 (98)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999999865

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.9e-20  Score=118.08  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             CCEEEEeCCCCCCCHHHH---HHHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274        100 SPTLHLSNIPASVTEDEL---KEAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQSH  168 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l---~~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~  168 (184)
                      .++|||+|||+++++++|   +++|++|| .|..|.+..+        .+++|||+|++.++|.+|++.|||..++| ++
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G-~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~g-r~   85 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-RT   85 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-EE
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccC-CceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECC-EE
Confidence            457999999999999999   77899999 9999998752        13789999999999999999999999999 89


Q ss_pred             EEEE
Q psy17274        169 LRVS  172 (184)
Q Consensus       169 l~v~  172 (184)
                      |+||
T Consensus        86 lkvS   89 (89)
T d2cpia1          86 LKAS   89 (89)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9997

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.9e-20  Score=119.97  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=68.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      ..++|||+|||..+|+++|+++|++|| .|..        +.+..     ..+++|||+|.+.++|.+|++.|||..++|
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCG-VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTS-CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCc-eEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            567899999999999999999999999 7643        33222     235899999999999999999999999999


Q ss_pred             CCeEEEEecCcccc
Q psy17274        166 QSHLRVSFSKSNIQ  179 (184)
Q Consensus       166 ~~~l~v~~~~~~~~  179 (184)
                       +.|+|+|++++..
T Consensus        86 -r~i~V~~a~~~~p   98 (101)
T d2cpea1          86 -SKLKVSLARKKPP   98 (101)
T ss_dssp             -EECEEECSSCCCC
T ss_pred             -EEEEEEEcCCCCC
Confidence             8999999987643

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=117.60  Aligned_cols=75  Identities=12%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||+.+|+++|+++|++|| .|.+|++..+     ++|+|||+|.+.++|.+|++.+|+ .+.| ++|+|.++
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~G-r~l~V~~a   86 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-RKANVNLA   86 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-EECEEEES
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcc-cccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCC-EEEEEEEc
Confidence            46799999999999999999999999 9999999752     478999999999999999999987 6999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ...
T Consensus        87 ~~~   89 (103)
T d2cqda1          87 YLG   89 (103)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=114.14  Aligned_cols=75  Identities=19%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++.+|||+|||+++|+++|+++|++|| .|..|++..+     ++|+|||+|.+.++|.+|++.  ++.|+| +.|+|.+
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~--~~~l~G-r~i~v~~   82 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDG-RWCDCKL   82 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETT-EEEEEEC
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHhhc-ccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhc--CCccCC-EEeEEEe
Confidence            567799999999999999999999999 9999998752     268999999999999999984  458999 8999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +.++
T Consensus        83 a~~k   86 (90)
T d2cqga1          83 PNSK   86 (90)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            8875

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.6e-20  Score=118.20  Aligned_cols=75  Identities=13%  Similarity=0.259  Sum_probs=68.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||+++|+++|+++|++|| .|..+.|..     ..+|+|||+|.+.++|..|++ ++|+.|+| +.|+|.++
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l~G-~~i~V~~a   96 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDG-RVVEPKRA   96 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEETT-EEEEEECC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhC-cccceeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeECC-EEEEEEEC
Confidence            46899999999999999999999999 999999864     247999999999999999996 79999999 89999998


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      +++
T Consensus        97 ~~k   99 (103)
T d1x4ba1          97 VAR   99 (103)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            865

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=9.4e-20  Score=111.23  Aligned_cols=70  Identities=13%  Similarity=0.266  Sum_probs=63.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .|||+|||+++|+++|+++|++|| .|..+.+...     .+++|||+|.+.++|..|++ |||+.++| ++|+|.++
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~g-r~i~V~~A   75 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN-KMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTS-CCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTT-BCCEEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhC-CcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECC-eEEEEEEC
Confidence            389999999999999999999999 8888877542     36899999999999999997 99999999 89999875

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.3e-20  Score=113.24  Aligned_cols=70  Identities=16%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .|||+|||+++|+++|+++|++|| .|.++++..     .++|+|||+|.+.++|.+|++ +|++.++| +.|+|..+
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~G-r~i~V~~A   76 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDS-KTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSS-CCCEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhC-CcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECC-eEEEEEEC
Confidence            599999999999999999999999 999998865     247999999999999999997 79999999 89999865

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=117.24  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=68.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .++|||+|||+++|+++|+++|++|| .|..+.+...    ++|+|||+|.+.++|.+|++.|||..|.| +++.|.+++
T Consensus        18 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~g-r~~~v~~~~   95 (101)
T d1x5oa1          18 PTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT-PPGVSAPTE   95 (101)
T ss_dssp             TTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC-CTTSCCCSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhcc-cccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECC-cCCccCCCC
Confidence            46799999999999999999999999 8988887753    25799999999999999999999999999 899988776


Q ss_pred             cc
Q psy17274        176 SN  177 (184)
Q Consensus       176 ~~  177 (184)
                      +=
T Consensus        96 Pl   97 (101)
T d1x5oa1          96 PL   97 (101)
T ss_dssp             CB
T ss_pred             Cc
Confidence            53

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.5e-19  Score=111.64  Aligned_cols=73  Identities=15%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||.++|+++|+++|++|| .|..+++..+     ++|+|||+|.+.++|.+|++ ++|+.|.| +.|+|..+
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~G-r~i~V~~A   82 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDG-RVVEPKRA   82 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETT-EECEEEEC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhc-cccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECC-EEEEEEee
Confidence            46899999999999999999999999 9999998752     26899999999999999997 69999999 89999876


Q ss_pred             C
Q psy17274        175 K  175 (184)
Q Consensus       175 ~  175 (184)
                      .
T Consensus        83 ~   83 (84)
T d1l3ka1          83 V   83 (84)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.2e-19  Score=109.51  Aligned_cols=71  Identities=15%  Similarity=0.288  Sum_probs=64.5

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ++|||+|||+++++++|+++|++|| .|..+++.++   .+++|||+|++.++|.+|+. |||+.|+| ++|.|+..
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G-~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~-~~~~~i~g-~~i~V~~~   74 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCG-PIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQ-NEIIVSHL   74 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGS-CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETT-EECEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCC-ceEEEEEEeeccccceEEEEEEcchHHhHHHHH-hcCcEECC-EEEEEEEC
Confidence            4799999999999999999999999 9999998763   25799999999999999985 89999999 89999854

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-19  Score=110.26  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      |||+|||+++|+++|+++|++|| .|..+++..+     ++|+|||+|.+.++|.+|++ +++..|+| +.|+|..
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G-~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~G-r~i~V~r   74 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFG-EVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNG-KVIDPKR   74 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTT-BCCEECC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhc-cccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECC-CEEEeeE
Confidence            89999999999999999999999 9999998752     37999999999999999997 79999999 8999853

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=110.56  Aligned_cols=72  Identities=15%  Similarity=0.312  Sum_probs=64.5

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .+.|||+|||+++|+++|+++|++|| .|..+.+..+     ++|+|||+|.++++|.+|++ |||+.|+| +.|+|..+
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l~G-r~i~V~~A   78 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNG-HNCEVRKA   78 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETT-EECEEEEC
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhc-cccccccccCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEECC-EEEEEEEC
Confidence            36799999999999999999999999 8999988753     25899999999998888885 89999999 99999865

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.7e-20  Score=118.95  Aligned_cols=78  Identities=15%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCCC-CH----HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASV-TE----DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~-t~----~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ++.+|||+||++++ ++    ++|+++|++|| .|.++++++ ++++|||+|++.++|.+|+..|||+.++| ++|+|.|
T Consensus         4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G-~i~~~~~~k-~~~~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~v~~   80 (104)
T d1weya_           4 GSSGLIACVANDDVFSESETRAKFESLFRTYD-KDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLG-KEMKLYF   80 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTC-SSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETT-EECEEEC
T ss_pred             CCceEEEEeCCchhcCcHHHHHHHHHHhcccc-cceEEEEec-CCCEEEEEECCHHHHHHHHHHhcccccCC-CEeEEee
Confidence            56789999999886 43    56999999999 999999884 89999999999999999999999999999 8999999


Q ss_pred             cCcccc
Q psy17274        174 SKSNIQ  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      ++.+..
T Consensus        81 a~~~~~   86 (104)
T d1weya_          81 AQTLHI   86 (104)
T ss_dssp             CCCSSC
T ss_pred             cccCCC
Confidence            987643

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-19  Score=114.55  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=64.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS  172 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~  172 (184)
                      |..+|||+|||.++|+++|+++|++||  |..++++..      .+|+|||+|.+.++|.+|+ .|||+.+.| +.|+|.
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g--~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~g-r~l~V~   89 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-KRIRVD   89 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT-EECEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc--cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECC-EEEEEE
Confidence            567899999999999999999999999  445666542      2579999999999998666 599999999 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |++..
T Consensus        90 ~a~~~   94 (104)
T d1wi8a_          90 VADQA   94 (104)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98865

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-19  Score=110.86  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=66.7

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .++|||+|||.++|+++|+++|+.|| .|..|++...    .+|+|||+|.+.++|.+|++ ++|..+.| +.|+|.|++
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G-~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g-~~l~v~~~~   82 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-TDLLILFKD   82 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT-CCCCEETT-EECEEEEGG
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhc-ccccceeeeeccCCcceEEEEEEcCHHHHHHHHH-HCCCEECC-EEEEEEEcC
Confidence            57899999999999999999999999 8999998653    25899999999999999996 79999999 899999875

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-19  Score=113.47  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=66.3

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc------CCCceEEEEeCCHHHHHHHHHHhcCe--ecCCCCeEEEE
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP------KDRKMALLQLDSIEEAITALIQMHNH--QLSEQSHLRVS  172 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~------~~~~~afV~f~~~~~A~~Ai~~lng~--~i~g~~~l~v~  172 (184)
                      +.|||+|||..+|+++|+++|++||..|..+++.+      .++|+|||+|.+.++|..|++.|++.  .++| +.|+|+
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g-~~i~V~   80 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-HQIAVD   80 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT-BCCEEE
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECC-EEEEEE
Confidence            46999999999999999999999993388898864      23689999999999999999999755  4568 899999


Q ss_pred             ecCcc
Q psy17274        173 FSKSN  177 (184)
Q Consensus       173 ~~~~~  177 (184)
                      |+++.
T Consensus        81 ~A~p~   85 (96)
T d2disa1          81 WAEPE   85 (96)
T ss_dssp             ESCSS
T ss_pred             EcCCC
Confidence            99865

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.9e-20  Score=110.99  Aligned_cols=66  Identities=14%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274        103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus       103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      |||+|||+++|+++|+++|++|| .|..+++...     .+|+|||+|.+.++|.+|++.|||..+.| +.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~G-r~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA-QMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-ESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhc-cccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECC-EECc
Confidence            79999999999999999999999 8999988652     46899999999999999999999999999 6764

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.5e-19  Score=113.16  Aligned_cols=74  Identities=18%  Similarity=0.342  Sum_probs=63.9

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|+|+|||.+++++||+++|+.|| .+.. +.+..+    .+|+|||+|.+.++|.+|+..|||+.++| |+|+|++
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~-~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~g-r~i~v~l   85 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLVL   85 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcc-cceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECC-EEEEEEE
Confidence            445799999999999999999999999 6543 344432    26899999999999999999999999999 8999997


Q ss_pred             c
Q psy17274        174 S  174 (184)
Q Consensus       174 ~  174 (184)
                      +
T Consensus        86 ~   86 (86)
T d2cqpa1          86 G   86 (86)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=108.66  Aligned_cols=70  Identities=13%  Similarity=0.270  Sum_probs=62.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .|||+|||+++|+++|+++|++|| .|..+++..+     ++|+|||+|.+.++|.+|++ ++++.++| +.|+|..+
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G-~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g-~~i~vk~A   75 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL-SKCEIKVA   75 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHS-CEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTT-BCCEEECC
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhC-CcccccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECC-EEeEEEEC
Confidence            489999999999999999999999 9999998752     37899999999999999997 47889999 89998754

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.7e-18  Score=110.00  Aligned_cols=76  Identities=18%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc-cC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-PK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~-~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ...+|||+|||+++|+++|+++|+++| .+....++ .+    .+|+|||+|.++++|.+|++ +|++.|+| |.|+|.+
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g-~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~g-R~i~V~~   90 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGH-RYIEIFK   90 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCC-EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSS-SCCEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcc-eEEEEEE
Confidence            456899999999999999999999999 66554333 32    36899999999999999996 99999999 9999999


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      ++..
T Consensus        91 ~~~~   94 (104)
T d1wg5a_          91 SSRA   94 (104)
T ss_dssp             ECTT
T ss_pred             CCHH
Confidence            8876

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=111.86  Aligned_cols=77  Identities=12%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      ...+|||.|||+++|+++|+++|+.+| .+ .+.+..+.    +++|||+|.+.++|.+|++ ||++.|+| |.|+|.++
T Consensus        14 ~~~~v~v~nLp~~~te~dl~~~F~~~~-~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~g-R~I~V~~s   89 (102)
T d1weza_          14 TGHCVHMRGLPYRATENDIYNFFSPLN-PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH-RYVELFLN   89 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCC-CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS-SCCEEEEE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHhccC-cc-eeeeEEecCCcceEEEEEEECCHHHHHHHHH-cCCCEECC-EEEEEEEc
Confidence            467899999999999999999999998 43 55555422    6899999999999999986 89999999 99999999


Q ss_pred             Ccccc
Q psy17274        175 KSNIQ  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      +.+..
T Consensus        90 ~~~~~   94 (102)
T d1weza_          90 STAGT   94 (102)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87643

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-18  Score=110.39  Aligned_cols=65  Identities=15%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             CCCEEEEeC--CCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274         99 PSPTLHLSN--IPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSE  165 (184)
Q Consensus        99 ~~~~l~v~n--lp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g  165 (184)
                      |+++|+|.|  ||+++|+++|+++|++|| .|..+.+.+ ++++|||+|.+.++|..|+..|||+.+..
T Consensus        17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G-~i~~i~~~~-~k~~aFV~f~~~e~A~~A~~~lng~~i~~   83 (101)
T d2cq2a1          17 ATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD   83 (101)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred             CCceEEEECCCCCCCCCHHHHHHHHHhhC-cccEEeecc-CccEEEEEECCHHHHHHHHHHhCCCCCCC
Confidence            788999966  999999999999999999 999998874 78999999999999999999999998843

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.7e-18  Score=110.33  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      ...+|||+|||+++|+++|+++|+.|| .|.. +.+..    ..+|+|||+|.+.++|.+|+. |||..|+| +.|.|.+
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g-~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~g-r~i~V~~   83 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNG-REAFVHV   83 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSC-CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETT-EEEEEEE
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccc-eEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECC-cEEEEEE
Confidence            467899999999999999999999999 6654 44433    237899999999999999996 99999999 8999998


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        84 ~~~~   87 (103)
T d2cpya1          84 VTLE   87 (103)
T ss_dssp             ECHH
T ss_pred             CCHH
Confidence            7543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-19  Score=111.64  Aligned_cols=72  Identities=22%  Similarity=0.435  Sum_probs=62.4

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274        101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR  170 (184)
Q Consensus       101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~  170 (184)
                      ++|||+|||..+|+++|+++|++|| .+..+.+.+          .++++|||+|.+.++|..|+. |||+.+.| +.|+
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g-~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~~G-r~l~   78 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQM-RLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQG-QSLK   78 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHH-TTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCSSS-SCCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhC-cEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEECC-EEEE
Confidence            5799999999999999999999999 665554432          357999999999999999985 99999999 8999


Q ss_pred             EEecC
Q psy17274        171 VSFSK  175 (184)
Q Consensus       171 v~~~~  175 (184)
                      |+.++
T Consensus        79 V~r~k   83 (90)
T d1u2fa_          79 IRRPH   83 (90)
T ss_dssp             CBCTT
T ss_pred             ECCCC
Confidence            97544

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.7e-17  Score=106.26  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             CCCE-EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCH-HHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274         99 PSPT-LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI-EEAITALIQMHNHQLSEQSHLRVSFSKS  176 (184)
Q Consensus        99 ~~~~-l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~-~~A~~Ai~~lng~~i~g~~~l~v~~~~~  176 (184)
                      .+.. +||+|||+++|+++|+++|++|| +|..|+++ .++++|||+|.++ ++|..|+..|||..+.+ +.+.|.+...
T Consensus         9 ~g~~~~fvgnL~~~~tee~Lk~~F~~fG-~V~~v~i~-~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~-~~~~v~~~~~   85 (113)
T d1owxa_           9 IGCLLKFSGDLDDQTCREDLHILFSNHG-EIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQL-RNKEVTWEVL   85 (113)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSC-CEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCT-TSSSEEEEEC
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHhcC-ChheEEEe-cCCceEEEEecCcHHHHHHHHHHhcCCceec-CceEEEEeec
Confidence            3444 48999999999999999999999 99999998 4899999999995 78999999999999988 6666666543

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.3e-17  Score=106.75  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE-EEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274         99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF-KFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF  173 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v-~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~  173 (184)
                      +..+|||+|||+++|+++|+++|+.+| .+..+ .+..    ..+|+|||+|.+.++|.+|+. |||..|+| |.|+|..
T Consensus        17 ~~~~i~v~nLp~~~t~~di~~~F~~~g-~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i~g-R~i~V~~   93 (112)
T d1wela1          17 AGFCVYLKGLPFEAENKHVIDFFKKLD-IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN-RFIQVHP   93 (112)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSC-BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT-SCBEEEE
T ss_pred             CCeEEEEecCCCcCcHHHHhhHHhhcc-ccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcCCC-EEEEEEE
Confidence            466899999999999999999999999 66442 2222    125899999999999999996 99999999 8999988


Q ss_pred             cCcc
Q psy17274        174 SKSN  177 (184)
Q Consensus       174 ~~~~  177 (184)
                      +...
T Consensus        94 ~~~~   97 (112)
T d1wela1          94 ITKK   97 (112)
T ss_dssp             ECHH
T ss_pred             cChH
Confidence            7544

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=103.46  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=56.7

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceec--CcEEEEEEccCccccCC
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKHQAVQLP   64 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~~~~~~~   64 (184)
                      |+++|++||.|.+|.++. +++|+|||+|.++++|+.|++.|||..+.  |++|+|.|++......+
T Consensus        24 L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~~~~~   90 (108)
T d2adba1          24 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK   90 (108)
T ss_dssp             HHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSCSCCCC
T ss_pred             HHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCcccccc
Confidence            678999999999999887 56899999999999999999999999985  78999999987665443

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=100.78  Aligned_cols=77  Identities=12%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCceeEEEEccC-CCceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274         99 PSPTLHLSNI--PASVT---------EDELKEAFTEKGFTVKGFKFFPK-DRKMALLQLDSIEEAITALIQMHNHQLSEQ  166 (184)
Q Consensus        99 ~~~~l~v~nl--p~~~t---------~~~l~~~F~~~G~~v~~v~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g~  166 (184)
                      .+++|+|.||  |.++.         .+||++.|++|| .|..|.+..+ .+|+|||+|++.++|.+|+..|||+.++| 
T Consensus         7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G-~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~g-   84 (99)
T d2dita1           7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG-QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG-   84 (99)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS-CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred             CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcc-cEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECC-
Confidence            6889999999  54432         368999999999 9999988753 37999999999999999999999999999 


Q ss_pred             CeEEEEecCcc
Q psy17274        167 SHLRVSFSKSN  177 (184)
Q Consensus       167 ~~l~v~~~~~~  177 (184)
                      |+|+|+|....
T Consensus        85 r~i~v~~~~g~   95 (99)
T d2dita1          85 RQITAQAWDGT   95 (99)
T ss_dssp             EECEEEECCSC
T ss_pred             EEEEEEEeCCc
Confidence            99999997643

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-17  Score=108.18  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=65.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      .++|.+++..+++++|+++|++|| .|.+|+|..+    .+|+|||+|.+.++|.+|+..|||+.++| |+|+|+|+.
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G-~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~g-r~i~v~~sP  104 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYG-EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG-QPIHAELSP  104 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT-EECCEEECC
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCC-CEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECC-EEEEEEECC
Confidence            477888899999999999999999 9999998752    36999999999999999999999999999 899999974

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=98.04  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|++.+ .+|+|||+|.+.++|..|++.|||..+.|++|+|+|++.+
T Consensus        20 L~~~F~~~G~I~~v~~~~-~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1          20 LRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             HHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred             HHHHHhccCccceeeecc-CCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            578999999999999765 6799999999999999999999999999999999999854

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=98.45  Aligned_cols=77  Identities=13%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcC
Q psy17274         98 PPSPTLHLSNI--PASVT--------EDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHN  160 (184)
Q Consensus        98 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng  160 (184)
                      +|+++|.|.|+  |..+.        .+||++.|++|| .|.+|.|.+.       ..|++||+|.+.++|.+|+..|||
T Consensus         2 ~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G-~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~G   80 (104)
T d1o0pa_           2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG-LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   80 (104)
T ss_dssp             CCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTS-CEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccC-ceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCC
Confidence            38999999999  55443        457899999999 9999988641       247999999999999999999999


Q ss_pred             eecCCCCeEEEEecCc
Q psy17274        161 HQLSEQSHLRVSFSKS  176 (184)
Q Consensus       161 ~~i~g~~~l~v~~~~~  176 (184)
                      +.++| |+|+++|...
T Consensus        81 r~f~g-R~v~v~f~~~   95 (104)
T d1o0pa_          81 RKFAN-RVVVTKYCDP   95 (104)
T ss_dssp             CCSSS-SCCEEEEECH
T ss_pred             CEECC-eEEEEEEcCH
Confidence            99999 9999999864

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-16  Score=100.40  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++   ++|||||+|.+.++|++|++.|||..+.|++|+|++++.
T Consensus        33 L~~~F~~~G~i~~~~i---~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          33 VEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             HHHSSTTSSCEEEEEE---ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             HHHHHhhcCCEEEEEE---eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            5789999999999998   579999999999999999999999999999999999974

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-16  Score=97.02  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=53.0

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|++++.     ++|+|||+|.++++|..|++.|||..+.|++|+|.|++
T Consensus        17 l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1          17 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            5689999999999999972     46999999999999999999999999999999999986

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.62  E-value=3.1e-16  Score=96.93  Aligned_cols=58  Identities=14%  Similarity=0.295  Sum_probs=53.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.++++.+     .++|||||+|.++++|++|++.|||..+.|++|+|+|+++
T Consensus        19 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          19 LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            568999999999999876     2579999999999999999999999999999999999873

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-16  Score=99.32  Aligned_cols=57  Identities=12%  Similarity=0.322  Sum_probs=53.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++++ .+|||||+|.+.++|..|++.|||..+.|++|+|.|++.
T Consensus        35 L~~~F~~fG~i~~v~i~~-~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          35 MRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   91 (96)
T ss_dssp             HHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHHHhCCceEEEEEe-cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            578999999999999876 589999999999999999999999999999999999874

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=4.7e-16  Score=95.16  Aligned_cols=57  Identities=16%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.++++..    .++|+|||+|.++++|++|++.|||..+.|++|+|+++.
T Consensus        17 l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          17 IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             HHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            578999999999999987    367899999999999999999999999999999999875

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.9e-16  Score=97.68  Aligned_cols=58  Identities=17%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|.+|++.|||..+.|++|+|+|+++
T Consensus        25 l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp   87 (90)
T d2cq0a1          25 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP   87 (90)
T ss_dssp             HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             HHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeC
Confidence            578999999999999887     2578999999999999999999999999999999999984

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.7e-16  Score=96.06  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++++     .++|||||+|.++++|+.|++.|||..+.|++|+|+|+++
T Consensus        19 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          19 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            568999999999999986     3568999999999999999999999999999999999873

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.60  E-value=6.1e-16  Score=95.77  Aligned_cols=57  Identities=16%  Similarity=0.310  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|++++.++|+|||+|.+.++|..|++.|+|..+. |++|+|.||+
T Consensus        25 l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          25 LSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             HHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             HHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            57899999999999998888899999999999999999999999885 6899999997

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=96.33  Aligned_cols=58  Identities=21%  Similarity=0.364  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.   .++|||||+|.++++|.+|++.|||..+.|++|+|++++.
T Consensus        28 L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          28 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             HHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             HHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            578999999999999887   3689999999999999999999999999999999999974

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=4e-16  Score=97.68  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|++|++.|||..+.|++|+|+|+..
T Consensus        24 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~   86 (88)
T d1rk8a_          24 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV   86 (88)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             HHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEecC
Confidence            568999999999999887     2478999999999999999999999999999999999873

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=95.86  Aligned_cols=58  Identities=17%  Similarity=0.331  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++..   ..+|||||+|.+.++|..|++.|||..+.|++|+|.|++.
T Consensus        25 l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~   85 (90)
T d2cqia1          25 ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   85 (90)
T ss_dssp             HHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            578999999999999876   4689999999999999999999999999999999999974

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.2e-16  Score=97.20  Aligned_cols=59  Identities=19%  Similarity=0.354  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|++++     .++|||||+|.+.++|+.|++.|||..+.|++|+|++++..
T Consensus        26 l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          26 LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             HHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            568999999999999876     36799999999999999999999999999999999998743

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=95.13  Aligned_cols=58  Identities=12%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++++     .++|||||+|.++++|..|++.|||..+.|++|.|++++.
T Consensus        18 l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_          18 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             HHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             HHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            568999999999999986     3589999999999999999999999999999999999974

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=99.71  Aligned_cols=58  Identities=17%  Similarity=0.362  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |+++|++||.|.+|++..  .++|||||+|.+.++|..|++.|||..+.|++|.|.++..
T Consensus        24 l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          24 MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             HHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             HHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            578999999999999876  4689999999999999999999999999999999999863

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7e-16  Score=96.76  Aligned_cols=58  Identities=16%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+++++.   .++|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus        25 l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          25 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             HHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             HHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            578999999999999987   3679999999999999999999999999999999999873

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.1e-15  Score=95.29  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|++.+ .+|||||+|.+.++|..|++.|||..+.|++|+|+|+.+.
T Consensus        25 l~~~F~~~G~i~~i~~~~-~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~   82 (86)
T d2cpja1          25 MRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   82 (86)
T ss_dssp             HHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             HHHHHHHhCCceEeeeec-ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCc
Confidence            568999999999999765 6799999999999999999999999999999999999754

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.5e-16  Score=96.13  Aligned_cols=59  Identities=20%  Similarity=0.403  Sum_probs=54.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|+.|++.|||..+.|++|.|+++++.
T Consensus        22 l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p~   85 (89)
T d2cqba1          22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM   85 (89)
T ss_dssp             HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            568999999999999886     36899999999999999999999999999999999999743

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.5e-15  Score=96.75  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.++++++ ++++|||+|.++++|.+|++.|||..+.|++|+|.|++...
T Consensus        27 l~~lF~~~G~i~~~~~~k-~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~   85 (104)
T d1weya_          27 FESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH   85 (104)
T ss_dssp             HHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred             HHHHhcccccceEEEEec-CCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCC
Confidence            357999999999999875 67999999999999999999999999999999999997443

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=4.1e-15  Score=91.25  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe-EEEEecCc
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH-LRVSFSKS  176 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~-l~v~~~~~  176 (184)
                      .+-|+|+++|++.+++.| ++|++|| .|.++++. +++++|||+|.++++|.+|++ +||..++| +. |.|.-...
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~~G-~I~~~~~~-~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g-~~~vgV~~~~~   76 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQYG-NILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGE-SIMIGVKPCID   76 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHTTS-CEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETT-TEECEEEECCC
T ss_pred             ccEEEEECCChHHHHHHH-HHHHhhh-hhheEEec-CCCCEEEEEEcccHHHHHHHh-cCCCeECC-cEEEEEEeCCC
Confidence            346999999999987655 5799999 99999876 478999999999999999996 99999999 64 56765443

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-15  Score=94.88  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=52.3

Q ss_pred             ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.+|+++..        ++|||||+|.+.++|.+|++.|||..+.|++|.|++++
T Consensus        15 l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~   79 (85)
T d2cpfa1          15 LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   79 (85)
T ss_dssp             HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             HHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            5689999999999998861        36899999999999999999999999999999999986

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.6e-15  Score=96.01  Aligned_cols=59  Identities=10%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++.      .++|||||+|.+.++|.+|++.| ||..+.|++|.|+|++.+
T Consensus        25 l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~   90 (94)
T d2cpha1          25 IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE   90 (94)
T ss_dssp             HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             HHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCC
Confidence            568999999999999865      25899999999999999999998 899999999999999744

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.2e-16  Score=98.84  Aligned_cols=56  Identities=13%  Similarity=0.274  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+|+|++    .++|+|||+|.+.++|.+|++.|||+.+.|++|.|+|+
T Consensus        44 l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            356899999999999986    36799999999999999999999999999999999986

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.4e-15  Score=94.68  Aligned_cols=57  Identities=12%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++..      .++|+|||+|.+.++|..|++ |||..+.|++|+|++++.
T Consensus        22 l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3          22 LRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLADK   84 (86)
T ss_dssp             HHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEECCC
T ss_pred             HHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEcCC
Confidence            468999999999999764      257899999999999999995 999999999999999873

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.7e-15  Score=94.78  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|..|++.|||..+.|++|+|+|+.
T Consensus        24 l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_          24 IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             HHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            568999999999999987     246899999999999999999999999999999999986

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=8.1e-15  Score=93.61  Aligned_cols=59  Identities=19%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|+.|++.|||..+.|++|+|.+++..
T Consensus        25 l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          25 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             HHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            568999999999999876     36899999999999999999999999999999999998744

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.7e-15  Score=94.05  Aligned_cols=62  Identities=15%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC--CceecCcEEEEEEccCccccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISKHQAVQL   63 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~s~~~~~~~   63 (184)
                      |+++|++||.|.+|++.+ .+|+|||+|.+.++|+.|++.|+  +..+.|++|+|.|++.+....
T Consensus        32 l~~~F~~fG~I~~~~~~~-~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~~~~   95 (104)
T d1wexa_          32 LVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR   95 (104)
T ss_dssp             HHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCC
T ss_pred             HHHhhhhcccceEEEEEe-cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCccCC
Confidence            578999999999999765 67999999999999999999884  556789999999998765543

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=6.2e-15  Score=92.30  Aligned_cols=53  Identities=21%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             hhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q psy17274          2 FSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVM   54 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~   54 (184)
                      +++|++||+|.+|.+++.        .+|+|||+|.++++|.+|++.|||..+.|++|+|.
T Consensus        29 ~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          29 PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             TTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             HHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            678999999999999862        24899999999999999999999999999999984

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-15  Score=94.79  Aligned_cols=58  Identities=19%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             hhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          2 FSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      +++|++||+|.+|++.+  .++|+|||+|.+.++|..|++.|||..+.|++|.|.|++.+
T Consensus        25 ~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~   84 (91)
T d1nu4a_          25 HAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   84 (91)
T ss_dssp             HHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             HHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            57899999999999766  36899999999999999999999999999999999999843

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.54  E-value=4.4e-15  Score=100.65  Aligned_cols=59  Identities=17%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|++++     .++|||||+|.+.++|.+|++.|||..+.|++|+|++++..
T Consensus        59 l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          59 LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             HHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            578999999999999986     25789999999999999999999999999999999998743

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.2e-15  Score=91.99  Aligned_cols=57  Identities=16%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|..+.++.     .++|+|||+|.+.++|++|++.|||..+.|++|.|++++
T Consensus        18 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1          18 IRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             HHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            468999999999887764     468999999999999999999999999999999999987

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-15  Score=96.13  Aligned_cols=59  Identities=15%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||.|.+++++.     .++|||||+|.+.++|+.|++.|||..+.|++|+|+|++..
T Consensus        35 l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          35 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK   98 (102)
T ss_dssp             HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             HHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            578999999999999886     24689999999999999999999999999999999998743

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-15  Score=92.48  Aligned_cols=56  Identities=18%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s   56 (184)
                      |.++|++||+|.+++++.     .++|||||+|.+.++|..|++.|||..+.|  ++|.|.||
T Consensus        23 L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          23 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            578999999999999986     257899999999999999999999999998  56999875

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.5e-15  Score=91.49  Aligned_cols=58  Identities=24%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~~   58 (184)
                      |.++|++||.|.++.+.. .++|+|||+|.+.++|.+|+..|+|..+. |++|+|+||+.
T Consensus        27 l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          27 LKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             HHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             HHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            568999999999887665 56899999999999999999999999985 89999999984

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=9.1e-15  Score=95.24  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++||+|.+|.+. .++|||||+|.+.++|++|++.|||..|.|++|.|+|+....
T Consensus        27 L~~~F~~fG~I~~v~l~-~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~~   85 (111)
T d1whxa_          27 IQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             HHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             HHhhhhccCCccEEEee-ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCCc
Confidence            57899999999999864 578999999999999999999999999999999999987543

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.4e-15  Score=92.83  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|..+.+..  ..+++|||+|.+.++|+.||+.|||..+.|++|+|+|++.
T Consensus        31 l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          31 IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             HHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            578999999999999776  4689999999999999999999999999999999999873

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.53  E-value=4.9e-15  Score=92.01  Aligned_cols=56  Identities=18%  Similarity=0.383  Sum_probs=50.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s   56 (184)
                      |.++|++||+|.++++++     .++|||||+|.+.++|..|++.|||..+.|  ++|+|+|+
T Consensus        23 l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          23 LDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             HHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            568999999999999987     256899999999999999999999999987  88999885

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.6e-14  Score=87.50  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++|| +..+++. .++|+|||+|.++++|++|++.|||..+.|++|+|++++.+.
T Consensus        15 l~~~F~~~g-~~~~~~~-~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d~   72 (75)
T d1wi6a1          15 VHDLLSDYE-LKYCFVD-KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDA   72 (75)
T ss_dssp             HHHHTTTSC-EEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCSTT
T ss_pred             HHHHHhccc-ccceeec-ccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCCC
Confidence            578999999 5555543 578999999999999999999999999999999999997543

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.8e-15  Score=91.64  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEE-EEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRV-KILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v-~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.++ ++++     .++|||||+|.++++|.+|++.|||..+.|++|+|+++.
T Consensus        15 l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~   77 (83)
T d1x5ta1          15 LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   77 (83)
T ss_dssp             HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             HHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEec
Confidence            57899999999764 5654     357999999999999999999999999999999999987

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-15  Score=96.20  Aligned_cols=58  Identities=17%  Similarity=0.299  Sum_probs=53.1

Q ss_pred             ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++..     ++|||||+|.+.++|+.|++.|||..+.|++|+|+++..
T Consensus        25 l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_          25 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             HHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            5789999999999998872     468999999999999999999999999999999999864

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.1e-14  Score=91.11  Aligned_cols=57  Identities=32%  Similarity=0.437  Sum_probs=51.5

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh--CCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM--DKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~s~~   58 (184)
                      |+++|++||.|.+|+++. .+++|||+|.+.++|..|++.|  ++..+.|++|+|.||+.
T Consensus        26 L~~lF~~fG~I~~i~i~~-~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          26 LLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             HHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             HHHHHHhhCCeEEEEeec-cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            678999999999999876 5689999999999999999966  67789999999999973

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.7e-15  Score=90.68  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=48.8

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV   53 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v   53 (184)
                      |.++|++||.|.+|+++.     .++|||||+|.+.++|..|++.|||..+.|++|+|
T Consensus        26 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          26 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             HHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            578999999999999886     24689999999999999999999999999999987

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-14  Score=89.49  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh--CCceecCcEEEEEEccCccc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM--DKLRVFGKQMRVMISKHQAV   61 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~s~~~~~   61 (184)
                      |.++|++||.|.+|++++ .+++|||+|.+.++|+.|++.+  ++..+.|++|+|.||+.+.+
T Consensus        25 L~~~f~~~G~i~~v~~~~-~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~~l   86 (88)
T d2cq1a1          25 VIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL   86 (88)
T ss_dssp             HHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred             HHHHHhcccccccccccc-cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCCCC
Confidence            578999999999999765 6799999999999999999865  57789999999999986554

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.9e-15  Score=92.30  Aligned_cols=57  Identities=23%  Similarity=0.326  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||.|.++.++.     .++|+|||+|.+.++|+.|++.|||..+.|++|+|+++.
T Consensus        22 l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~   83 (90)
T d1x5sa1          22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG   83 (90)
T ss_dssp             HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred             HHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            568999999999998876     368999999999999999999999999999999999986

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.6e-15  Score=91.55  Aligned_cols=57  Identities=23%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc-eecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL-RVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+++++. ++|||||+|.++++|++|++.|||. .+.|++|+|+|+.+
T Consensus        18 L~~~F~~~G~i~~~~~~~-~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1          18 LRQLFGDRKLPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             HHHHHHHTTCCCSSCEEE-ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             HHHHHHHhCcEEEeEEec-ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            578999999999887765 5799999999999999999999996 69999999999874

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=93.02  Aligned_cols=56  Identities=23%  Similarity=0.342  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|+.||+|.+|++++     .++|||||+|.+.++|++|+ .|||..+.|++|.|.+++
T Consensus        35 l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~-~l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          35 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred             HHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHH-HHCCCEECCEEEEEEECC
Confidence            468999999999999987     36899999999999999999 599999999999999875

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.8e-14  Score=91.86  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHH--HhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMM--HMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~--~l~g~~~~g~~l~v~~s~~   58 (184)
                      |+++|++||.|.+|.+++ .+|+|||+|.+.++|.+|++  .+++..+.|++|+|.||+.
T Consensus        36 l~~~F~~fG~V~~v~~~~-~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~   94 (99)
T d1x4fa1          36 VLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK   94 (99)
T ss_dssp             HHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             HHhhhccccceeEEEEee-cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCC
Confidence            578999999999999875 57999999999999999998  5788899999999999963

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.5e-15  Score=91.07  Aligned_cols=55  Identities=9%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.++++.  +.|+|||+|.+.++|++||+.|||..|.|+.|.|.+.+
T Consensus        17 l~~~F~~~G~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~   71 (87)
T d3begb1          17 LKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   71 (87)
T ss_dssp             HHHHHGGGSCEEEEEEC--TTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             HHHHHhhhccccccccc--ccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEe
Confidence            57899999999999975  45999999999999999999999999999999998765

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.9e-14  Score=90.98  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|++|++.+|+ .+.|++|.|+++...
T Consensus        27 l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          27 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG   89 (103)
T ss_dssp             HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred             HHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCEEEEEEEcCCC
Confidence            578999999999999986     3689999999999999999999886 699999999998743

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=88.05  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|..+.+. .++|||||+|.+.++|..|++.|||..+.|++|.|+|+++
T Consensus        25 l~~~F~~~g~i~~~~~~-~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP   81 (86)
T d2cpda1          25 IEKEFNNIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP   81 (86)
T ss_dssp             HHHHHHTTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred             HHHhhcccceeeeEEEc-cccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccC
Confidence            56899999999888764 4789999999999999999999999999999999999873

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-14  Score=88.91  Aligned_cols=58  Identities=19%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|++|| +..+.+ ..++|+|||+|.++++|+.|++.|||..+.|++|+|++++.+.
T Consensus        22 l~~lF~~~G-~~~~~~-~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~~   79 (88)
T d1wg1a_          22 VHDLLKDYD-LKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             HHHHTCSSC-CCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             HHHHHHhcC-ceeeee-eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            578999999 333443 3468999999999999999999999999999999999997544

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.6e-14  Score=90.17  Aligned_cols=57  Identities=19%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~   58 (184)
                      |.++|++||.|.++++.+ .+++|||+|.+.++|..|++.|||..+.|  ++|+|+|++.
T Consensus        34 l~~~f~~~G~i~~~~~~~-~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          34 LAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             HHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             HHHHHHhhcccceEeeec-cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            578999999999999875 57999999999999999999999999986  5899999984

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.5e-14  Score=89.57  Aligned_cols=57  Identities=11%  Similarity=0.199  Sum_probs=52.5

Q ss_pred             ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |++.|++||.|.+|++.. ..+|+|||+|.++++|.+|++.|||..|.|++|.|++..
T Consensus        36 v~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~   93 (99)
T d2dita1          36 LRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD   93 (99)
T ss_dssp             HHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             HHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeC
Confidence            357899999999999877 468999999999999999999999999999999999875

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-14  Score=85.94  Aligned_cols=54  Identities=13%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI   55 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~   55 (184)
                      |.++|++||+|.+++++.     .++|||||+|.++++|+.|++ +++..+.|++|.|+.
T Consensus        16 l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~V~r   74 (75)
T d1hd0a_          16 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKR   74 (75)
T ss_dssp             HHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCEECC
T ss_pred             HHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEEeeE
Confidence            578999999999999887     368999999999999999996 799999999999853

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3e-14  Score=86.68  Aligned_cols=55  Identities=7%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+++++.     .++|||||+|.++++|++|++ +|+..+.|++|.|+.+
T Consensus        17 l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          17 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred             HHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCeEEEEEEC
Confidence            568999999999999876     368999999999999999996 7999999999999875

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=7.1e-14  Score=88.90  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.++++.  ++|+|||+|.+.++|++||+.|||..|.|+.|+|.+.+.
T Consensus        32 L~~~F~~~G~v~~~~i~--~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~   87 (98)
T d1wg4a_          32 LKDHMREAGDVCYADVQ--KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV   87 (98)
T ss_dssp             HHHHHTTSSCEEEEEEE--TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEE
T ss_pred             HHHHHHhhccccccccc--ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEec
Confidence            57899999999999975  569999999999999999999999999999999999863

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.44  E-value=7e-15  Score=92.43  Aligned_cols=57  Identities=11%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.+++++.    .++|||||+|.+.++|++|++ |||..+.|++|+|++++.
T Consensus        30 l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          30 LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCC
T ss_pred             HHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEecCC
Confidence            578999999999887765    478999999999999999995 999999999999999873

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.43  E-value=2.2e-14  Score=90.99  Aligned_cols=58  Identities=10%  Similarity=0.040  Sum_probs=52.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|..++....++|||||+|.+.++|..|++.|||..+.|++|+|+|+..
T Consensus        33 l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~   90 (96)
T d1fjca_          33 LKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             HHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             HHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            5789999999988876546789999999999999999999999999999999999874

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-14  Score=92.41  Aligned_cols=57  Identities=11%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.++.+..    .++|||||+|.+.++|++|++.|||..+.|+++.|.+++
T Consensus        35 L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~   95 (101)
T d1x5oa1          35 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE   95 (101)
T ss_dssp             HHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred             HHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCC
Confidence            578999999999998876    247899999999999999999999999999998886654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-14  Score=93.26  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||.|.++.++.     .++|||||+|.++++|..|++.|||..+.|++|+|+|++.
T Consensus        35 l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          35 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             HHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             HHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            578999999999887764     4689999999999999999999999999999999999984

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=85.67  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=50.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.++++|++|++ ++|..+.|++|+|..+.
T Consensus        23 l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1          23 LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECC
T ss_pred             HHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCEEEEEEeee
Confidence            578999999999999887     358999999999999999996 69999999999998764

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-14  Score=85.66  Aligned_cols=52  Identities=15%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMR   52 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   52 (184)
                      |.++|++||+|.++++..     .++|+|||+|.++++|++|++.|||..+.|+.|+
T Consensus        15 l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1          15 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             HHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            468999999999999876     3689999999999999999999999999998763

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=88.04  Aligned_cols=56  Identities=7%  Similarity=0.134  Sum_probs=51.1

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.++.|..     .++|||||+|.+.++|+.|+ .++|..+.|++|.|.++.
T Consensus        37 L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al-~~~~~~l~G~~i~V~~a~   97 (103)
T d1x4ba1          37 LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAV   97 (103)
T ss_dssp             HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHH-TSCSEEETTEEEEEECCS
T ss_pred             HHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHH-HhCCCeECCEEEEEEECc
Confidence            578999999999999876     36899999999999999999 579999999999999876

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.5e-14  Score=87.69  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|++...++|||||+|.+.++|++|+.  ++..+.|++|.|++++.
T Consensus        22 L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~--~~~~i~g~~l~v~~a~~   77 (88)
T d1wf0a_          22 LREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP   77 (88)
T ss_dssp             HHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred             HHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHh--CCCEECCEEeEEEeCCC
Confidence            578999999999999887889999999999999999984  88899999999999863

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=86.39  Aligned_cols=56  Identities=14%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.++++|++|++.  +..+.|+.|.|+++..
T Consensus        25 l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~--~~~l~Gr~i~v~~a~~   85 (90)
T d2cqga1          25 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNS   85 (90)
T ss_dssp             HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCT
T ss_pred             HHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhc--CCccCCEEeEEEeCCC
Confidence            578999999999999987     3579999999999999999985  4478999999998863

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.9e-13  Score=93.71  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=62.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274        100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS  174 (184)
Q Consensus       100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~  174 (184)
                      .++|||+|||+++|+++|+++|++|| .|.++.+..+     .+|+|||+|.+.++|..|+.. ++..+++ +.+.+...
T Consensus         6 ~r~lfV~nLp~~~te~~L~~~F~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~-~~~~~~~~   82 (183)
T d1u1qa_           6 LRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-RVVEPKRA   82 (183)
T ss_dssp             HHEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-EECEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHcC-CEEEEEeeecccCCCccCceecccCCHHHHHHHHHh-cCCcccc-cchhhhhh
Confidence            36899999999999999999999999 9999998742     368999999999999999985 5555666 57777655


Q ss_pred             Ccc
Q psy17274        175 KSN  177 (184)
Q Consensus       175 ~~~  177 (184)
                      ...
T Consensus        83 ~~~   85 (183)
T d1u1qa_          83 VSR   85 (183)
T ss_dssp             CCT
T ss_pred             hhc
Confidence            443

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2e-13  Score=86.75  Aligned_cols=58  Identities=19%  Similarity=0.341  Sum_probs=51.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhC------CceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMD------KLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+|.++.++.     .++|||||+|.+.++|..|++.||      |..+.|++|+|++++.
T Consensus        25 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          25 LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT   93 (98)
T ss_dssp             HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred             HHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCC
Confidence            578999999999998876     268999999999999999999887      6678899999999874

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2.7e-13  Score=81.90  Aligned_cols=55  Identities=16%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|+.||.|.+|++..   .++++|||+|.++++|++|+ .+||..+.|++|.|+.+
T Consensus        17 l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al-~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          17 VYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             HHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred             HHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHH-HhcCcEECCEEEEEEEC
Confidence            468999999999999887   35689999999999999999 58999999999999753

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.2e-13  Score=83.50  Aligned_cols=55  Identities=5%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||.|..+.+..     .++|+|||+|.+.++|+.|++ |||..+.|++|+|+++
T Consensus        16 l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          16 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             HHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence            568999999999998766     368999999999999999996 9999999999999864

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=84.55  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|+.||+|.+|++..    .++|+|||+|.++++|++|++ ++|..+.|++|.|++..
T Consensus        23 l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~   82 (85)
T d1zh5a2          23 IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD   82 (85)
T ss_dssp             HHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT-CCCCEETTEECEEEEGG
T ss_pred             HHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHH-HCCCEECCEEEEEEEcC
Confidence            568999999999999876    246899999999999999994 79999999999999865

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-13  Score=82.46  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||.|.++++..     .++|+|||+|.++++|.+|+ .+||..+.|++|.|+.+
T Consensus        19 l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al-~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          19 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HCSCCEETTEECEEEEC
T ss_pred             HHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHH-HhCCCEECCEEEEEEEC
Confidence            568999999999999887     25799999999999999999 58999999999999864

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-13  Score=86.94  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             ChhhhccCCCeeE--------EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGDVLR--------VKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~V~~--------v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~   58 (184)
                      |.++|+.||.|..        +.+..     .++|+|||+|.+.++|..|++.|||..+.|++|+|++++.
T Consensus        25 l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~   95 (101)
T d2cpea1          25 LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK   95 (101)
T ss_dssp             HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred             HHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            4689999999853        33332     2469999999999999999999999999999999999874

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-13  Score=85.09  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             ChhhhccCCC-eeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEEEccC
Q psy17274          1 MFSLTGVYGD-VLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRVMISKH   58 (184)
Q Consensus         1 L~~lF~~yG~-V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~s~~   58 (184)
                      |.++|++||+ |.+|++++      .++|||||+|.+.++|..|++.|++.  .+.|++|.|+|+++
T Consensus        18 l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p   84 (96)
T d2disa1          18 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP   84 (96)
T ss_dssp             HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred             HHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCC
Confidence            5689999996 89999875      36799999999999999999999754  55799999999974

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.5e-13  Score=85.61  Aligned_cols=56  Identities=11%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             hhhhccCCCeeEEEEee-------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          2 FSLTGVYGDVLRVKILY-------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      .+.|++||.|.+|.|.+       ...|++||+|.++++|.+|++.|||+.|.||+|.+.|..
T Consensus        32 ~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~   94 (104)
T d1o0pa_          32 RDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   94 (104)
T ss_dssp             HHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred             HHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence            46799999999999875       135899999999999999999999999999999999975

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-13  Score=83.01  Aligned_cols=55  Identities=13%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|++||+|.+|+++.     .++|||||+|.+.++|++|++ +++..+.|+.|.|+.+
T Consensus        16 l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1          16 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             HHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTTBCCEEECC
T ss_pred             HHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECCEEeEEEEC
Confidence            568999999999999887     368999999999999999995 5778899999998753

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=83.34  Aligned_cols=57  Identities=11%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.|| |.+++++.      .++|||||+|.+.++|++|+ .|||..+.|++|+|+++...
T Consensus        32 l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~gr~l~V~~a~~~   94 (104)
T d1wi8a_          32 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             HHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECCEEEEEEECCCC
Confidence            578999999 77777665      25689999999999998777 69999999999999998743

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=5.1e-13  Score=82.80  Aligned_cols=56  Identities=11%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             ChhhhccCCCeeE-EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274          1 MFSLTGVYGDVLR-VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS   56 (184)
Q Consensus         1 L~~lF~~yG~V~~-v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s   56 (184)
                      |.++|+.||.|.+ +.+..    .++|+|||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus        26 i~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          26 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             HHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            4689999999976 44443    35799999999999999999999999999999999864

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-12  Score=82.78  Aligned_cols=46  Identities=11%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF   47 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~   47 (184)
                      |.++|++||.|.+|.++. .++||||+|.+.++|..|++.|||..+.
T Consensus        37 L~~~F~~~G~i~~i~~~~-~k~~aFV~f~~~e~A~~A~~~lng~~i~   82 (101)
T d2cq2a1          37 LLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVV   82 (101)
T ss_dssp             HHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHhhCcccEEeecc-CccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence            578999999999998765 6799999999999999999999999884

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.5e-12  Score=78.58  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEccC
Q psy17274          2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMISKH   58 (184)
Q Consensus         2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s~~   58 (184)
                      ...|++||+|.++++. ..+|||||+|.++++|++|++ +||..+.|+. |.|.....
T Consensus        21 l~~F~~~G~I~~~~~~-~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~~vgV~~~~~   76 (81)
T d1wwha1          21 LLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID   76 (81)
T ss_dssp             HHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred             HHHHHhhhhhheEEec-CCCCEEEEEEcccHHHHHHHh-cCCCeECCcEEEEEEeCCC
Confidence            3579999999999865 467999999999999999995 9999999985 56877654

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.4e-12  Score=81.02  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||. .+|.++.    ..+|||||+|.+.++|++|++ ||+..+.||.|+|.++...
T Consensus        32 l~~~F~~~~~-~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~I~V~~s~~~   92 (102)
T d1weza_          32 IYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             HHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred             HHHHHhccCc-ceeeeEEecCCcceEEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEcCCC
Confidence            5689999985 4676666    257899999999999999995 8999999999999998743

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.7e-12  Score=79.64  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA   60 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~   60 (184)
                      |.++|+.||.|..+.++.     .++|+|||+|.++++|++|++ +|+..|.||.|+|.+++...
T Consensus        32 I~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~gR~i~V~~~~~~~   95 (104)
T d1wg5a_          32 IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             HHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSSSCCEEEEECTTT
T ss_pred             HHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcceEEEEEECCHHH
Confidence            578999999998754444     367999999999999999995 89999999999999987544

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7e-12  Score=80.16  Aligned_cols=58  Identities=14%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             ChhhhccCCCeeE-EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274          1 MFSLTGVYGDVLR-VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ   59 (184)
Q Consensus         1 L~~lF~~yG~V~~-v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~   59 (184)
                      |.++|+.||.|.. +.+..    .++|+|||+|.++++|++|++ |||..|.|++|.|.++...
T Consensus        25 l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr~i~V~~~~~~   87 (103)
T d2cpya1          25 VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGREAFVHVVTLE   87 (103)
T ss_dssp             HHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETTEEEEEEEECHH
T ss_pred             HhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECCcEEEEEECCHH
Confidence            4689999999976 44433    368999999999999999995 9999999999999987533

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=80.31  Aligned_cols=56  Identities=11%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCH-HHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAES-HQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~-~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|++||+|.+|.+++ .+|+|||.|.++ ++|..|+..||+..+.++.+.|.+..
T Consensus        28 Lk~~F~~fG~V~~v~i~~-~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~   84 (113)
T d1owxa_          28 LHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   84 (113)
T ss_dssp             HHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             HHHHHHhcCChheEEEec-CCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence            568999999999999886 579999999997 68999999999999988777776654

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.3e-12  Score=81.66  Aligned_cols=56  Identities=13%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             ChhhhccCCCeeEEEEee----------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY----------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|+.||.|.++.+..          .++|||||+|.+.++|+.|+ .|||..+.|++|+|..++
T Consensus        18 l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~-~l~g~~~~Gr~l~V~r~k   83 (90)
T d1u2fa_          18 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH   83 (90)
T ss_dssp             HHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG-GGSSCCSSSSCCCCBCTT
T ss_pred             HHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH-hhCCcEECCEEEEECCCC
Confidence            468999999987765432          46899999999999999999 599999999999996443

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.8e-11  Score=77.82  Aligned_cols=56  Identities=7%  Similarity=0.015  Sum_probs=47.3

Q ss_pred             ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.++|+.||.|..+.++.     ..+|+|||+|.+.++|++|+ .|||..|.|+.|.|..+.
T Consensus        35 i~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al-~~~~~~i~gR~i~V~~~~   95 (112)
T d1wela1          35 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPIT   95 (112)
T ss_dssp             HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHH-TSCSBCSTTSCBEEEEEC
T ss_pred             HhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHH-HcCCCcCCCEEEEEEEcC
Confidence            468999999997643333     35799999999999999999 499999999999998765

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-07  Score=54.23  Aligned_cols=59  Identities=27%  Similarity=0.508  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcCCceeEEEEccCC--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274        115 DELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK  175 (184)
Q Consensus       115 ~~l~~~F~~~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~  175 (184)
                      +.|.+.|+++| .|.++.+.+.+  .-.|-|...+.++|.-|+..|+-+.|++ ++|.|+|+.
T Consensus        11 q~L~~~f~~h~-~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~-KRI~Vs~~~   71 (73)
T d2dgxa1          11 QLLQEAFARHG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS-KKILVSLAT   71 (73)
T ss_dssp             HHHHHHHHHHS-CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECC
T ss_pred             HHHHHHHHhhe-eEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCC-eEEEEEEec
Confidence            34557799999 99999998744  4689999999999999999999999999 999999975

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.5e-07  Score=51.58  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274          1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK   57 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~   57 (184)
                      |.+.|+++|.|.++.+..  .-.-.|-|...+.++|..|+..|+-..+.+++|.|.++.
T Consensus        13 L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1          13 LQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             HHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             HHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            568999999999999876  345679999999999999999999999999999999875

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2e-06  Score=51.72  Aligned_cols=71  Identities=13%  Similarity=0.170  Sum_probs=56.2

Q ss_pred             CCCEEEEeCCCCCCC---------HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274         99 PSPTLHLSNIPASVT---------EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL  169 (184)
Q Consensus        99 ~~~~l~v~nlp~~~t---------~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l  169 (184)
                      |..||.|.=..++..         -.+|.+.|..|| +|.-|++..   +...|+|.+-+.|.+|+. ++|.++.| +.|
T Consensus        14 pDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~G-eViLvRFv~---d~mwVTF~dG~SAL~al~-l~g~~v~G-~~l   87 (95)
T d1ufwa_          14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQ---GQMLVTFADSHSALSVLD-VDGMKVKG-RAV   87 (95)
T ss_dssp             TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEET---TEEEEECSCSHHHHHHHH-GGGSEETT-EEE
T ss_pred             CCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCC-eEEEEEEeC---CeEEEEECCcHHHHHHhc-cCCeEEcc-eEE
Confidence            666777753332222         246788899999 998888875   678999999999999988 99999999 999


Q ss_pred             EEEecC
Q psy17274        170 RVSFSK  175 (184)
Q Consensus       170 ~v~~~~  175 (184)
                      +|+...
T Consensus        88 ~It~~~   93 (95)
T d1ufwa_          88 KISGPS   93 (95)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            998643

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2e-06  Score=51.73  Aligned_cols=51  Identities=25%  Similarity=0.512  Sum_probs=46.0

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI   55 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~   55 (184)
                      |.+.|..||+|.-|++.   .+..+|+|.+-++|-+|+ .++|.++.|+.|.|..
T Consensus        41 Llq~l~~~GeViLvRFv---~d~mwVTF~dG~SAL~al-~l~g~~v~G~~l~It~   91 (95)
T d1ufwa_          41 LMQTLGSYGTIVLVRIN---QGQMLVTFADSHSALSVL-DVDGMKVKGRAVKISG   91 (95)
T ss_dssp             HHHHHHHHSCCSEEEEE---TTEEEEECSCSHHHHHHH-HGGGSEETTEEEEEEC
T ss_pred             HHHHHhhCCeEEEEEEe---CCeEEEEECCcHHHHHHh-ccCCeEEcceEEEEec
Confidence            46789999999999986   488999999999999999 7899999999999964

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3e-05  Score=47.05  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=61.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-------CceEEEEeCCHHHHHHHHHHhcCeecCCC----CeEE
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-------RKMALLQLDSIEEAITALIQMHNHQLSEQ----SHLR  170 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-------~~~afV~f~~~~~A~~Ai~~lng~~i~g~----~~l~  170 (184)
                      .|.|..||+++|++++.+.++..| .+......+..       -..|+|.|.+.++...-.+..+|+.+-+.    .+-.
T Consensus         3 KvVvRrLPP~Lte~~F~~~l~~~~-~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~~g~~~~a~   81 (91)
T d1uw4a_           3 KVVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI   81 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred             eEEEecCCCCCCHHHHHHHhCCcC-ceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcCCCCEeeeE
Confidence            589999999999999999999998 88777666521       36899999999999999999999998664    2456


Q ss_pred             EEecCcc
Q psy17274        171 VSFSKSN  177 (184)
Q Consensus       171 v~~~~~~  177 (184)
                      |.|+..+
T Consensus        82 VE~AP~q   88 (91)
T d1uw4a_          82 VEFAPFQ   88 (91)
T ss_dssp             EEECSSC
T ss_pred             EEEcCcc
Confidence            7776554

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.016  Score=34.88  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274        102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH  159 (184)
Q Consensus       102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln  159 (184)
                      .+|.-..|......||.++|++|| .|. |..+  +-..|||.-.+.++|..++..+.
T Consensus        17 HVf~~tFP~~Wk~~dI~~lFSpfG-~V~-VswI--ddTSa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          17 HVLHVTFPKEWKTSDLYQLFSAFG-NIQ-ISWI--DDTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             SEEEEECCTTCCHHHHHHHHTTTC-SCC-CEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred             eeEEEeCCcccchhHHHHHhcCCC-ceE-EEEe--cCceEEEEecCHHHHHHHHHHhc
Confidence            466677999999999999999999 553 4444  33589999999999999988655

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.043  Score=32.97  Aligned_cols=39  Identities=18%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274          1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD   42 (184)
Q Consensus         1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~   42 (184)
                      |.+||++||.|.=-.|   ....|||...+.++|+.++..++
T Consensus        32 I~~lFSpfG~V~VswI---ddTSa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          32 LYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             HHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCceEEEEe---cCceEEEEecCHHHHHHHHHHhc
Confidence            4689999999864444   34789999999999999997654