Psyllid ID: psy17282

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MFSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKEQ
Secondary Structure (PSIPRED)
ccEEEHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mfsvsispgfvalftlpkvyennkaTIDANLEVVQGKIAEITSKVKaaipigkkeekkeq
Flexible Loop (DISEMBL)
mfsvsispgfVALFTLPKVYENNKATIDANLEVVQGKIAEItskvkaaipigkkeekkeq
Low Complexity Region (SEG)
MFSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKEQ
Disordered region (IsUnstruct)
*****ISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAI***********
Disordered Region (DISOPRED)
*FSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKA*************
Disordered Region (DISEMBL)
MFSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIG********
Disordered Region (DISPRO)
MFSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKEQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
270006218	211	hypothetical protein TcasGA2_TC008387 [T	0.866	0.246	0.773	1e-13
189236779	491	PREDICTED: similar to reticulon/nogo [Tr	0.866	0.105	0.773	1e-13
326368261	200	reticulon 1 isoform 2 [Acyrthosiphon pis	0.866	0.26	0.740	2e-13
326368263	220	reticulon 1 isoform 3 [Acyrthosiphon pis	0.866	0.236	0.740	2e-13
326368259	400	reticulon 1 isoform 1 [Acyrthosiphon pis	0.766	0.115	0.804	3e-13
158297273	218	AGAP007940-PA [Anopheles gambiae str. PE	0.8	0.220	0.75	9e-13
94468970	223	ER protein reticulon [Aedes aegypti]	0.8	0.215	0.708	8e-12
332373228	206	unknown [Dendroctonus ponderosae]	0.85	0.247	0.725	8e-12
157108519	493	reticulon/nogo [Aedes aegypti] gi|108884	0.8	0.097	0.708	2e-11
170037080	316	ER protein reticulon [Culex quinquefasci	0.866	0.164	0.653	2e-11

>gi|270006218|gb|EFA02666.1| hypothetical protein TcasGA2_TC008387 [Tribolium castaneum]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 47/53 (88%), Gaps = 1/53 (1%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKK-EEKKEQ 60
            +VALF+LPKVYE NK  IDANLE+V+ K+AEITSKVKAAIPIGKK EEKK+Q
Sbjct: 159 AWVALFSLPKVYETNKTQIDANLEIVRTKLAEITSKVKAAIPIGKKAEEKKDQ 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236779|ref|XP_967166.2| PREDICTED: similar to reticulon/nogo [Tribolium castaneum]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 47/53 (88%), Gaps = 1/53 (1%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKK-EEKKEQ 60
            +VALF+LPKVYE NK  IDANLE+V+ K+AEITSKVKAAIPIGKK EEKK+Q
Sbjct: 439 AWVALFSLPKVYETNKTQIDANLEIVRTKLAEITSKVKAAIPIGKKAEEKKDQ 491

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326368261|ref|NP_001191910.1| reticulon 1 isoform 2 [Acyrthosiphon pisum]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 47/54 (87%), Gaps = 2/54 (3%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKK--EEKKEQ 60
           GFVALFTLPKVYENNK  ID N+EVV+ KIAE+T+KV+AAIPIGKK  E KK++
Sbjct: 147 GFVALFTLPKVYENNKTQIDQNIEVVRSKIAELTNKVRAAIPIGKKNPETKKKE 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326368263|ref|NP_001191911.1| reticulon 1 isoform 3 [Acyrthosiphon pisum]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 47/54 (87%), Gaps = 2/54 (3%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKK--EEKKEQ 60
           GFVALFTLPKVYENNK  ID N+EVV+ KIAE+T+KV+AAIPIGKK  E KK++
Sbjct: 167 GFVALFTLPKVYENNKTQIDQNIEVVRSKIAELTNKVRAAIPIGKKNPETKKKE 220

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326368259|ref|NP_001191909.1| reticulon 1 isoform 1 [Acyrthosiphon pisum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 42/46 (91%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKK 54
           GFVALFTLPKVYENNK  ID N+EVV+ KIAE+T+KV+AAIPIGKK
Sbjct: 347 GFVALFTLPKVYENNKTQIDQNIEVVRSKIAELTNKVRAAIPIGKK 392

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297273|ref|XP_317538.3| AGAP007940-PA [Anopheles gambiae str. PEST] gi|157015115|gb|EAA43928.3| AGAP007940-PA [Anopheles gambiae str. PEST]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 42/48 (87%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
           GFVALFTLPKVYENNK +ID +LE+V+ KI EIT KVKAA+P+GKK E
Sbjct: 166 GFVALFTLPKVYENNKQSIDTHLEMVRSKIQEITEKVKAAVPLGKKTE 213

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468970|gb|ABF18334.1| ER protein reticulon [Aedes aegypti]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
            FVALFTLPKVYENNK +IDA LE+V+ KI E++ K+KAA+PIGKK E
Sbjct: 171 AFVALFTLPKVYENNKQSIDAYLELVRSKILEVSDKIKAAVPIGKKAE 218

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373228|gb|AEE61755.1| unknown [Dendroctonus ponderosae]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 42/51 (82%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKE 59
            +V LFTLPKVYE N+  ID NLE+V+ KIAEIT+KVKAAIPIGKK EK E
Sbjct: 156 AWVTLFTLPKVYEANQVQIDTNLEIVRIKIAEITTKVKAAIPIGKKGEKVE 206

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108519|ref|XP_001650264.1| reticulon/nogo [Aedes aegypti] gi|108884024|gb|EAT48249.1| AAEL000713-PA [Aedes aegypti]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
            FVALFTLPKVYENNK +IDA LE+V+ KI E++ K+KAA+PIGKK E
Sbjct: 441 AFVALFTLPKVYENNKQSIDAYLELVRSKILEVSDKIKAAVPIGKKAE 488

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037080|ref|XP_001846388.1| ER protein reticulon [Culex quinquefasciatus] gi|167880095|gb|EDS43478.1| ER protein reticulon [Culex quinquefasciatus]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (82%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKEQ 60
            F+ALFTLPKVYENNK +IDA LE+V+ KI EIT KVKA++P+GKK E  ++
Sbjct: 264 AFIALFTLPKVYENNKQSIDAYLELVRSKILEITEKVKASVPLGKKVEADKE 315

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
FB|FBgn0053113	607	Rtnl1 "Reticulon-like1" [Droso	0.766	0.075	0.630	9.6e-11

FB|FBgn0053113 Rtnl1 "Reticulon-like1" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 29/46 (63%), Positives = 39/46 (84%)

Query:    10 FVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKE 55
             FV+LFTLPKVYENNK +ID +L++V+ K+ EIT K++ AIPIG K+
Sbjct:   551 FVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKK 596


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.336    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       60        60   0.00091  102 3  10 23  0.40    28
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  456 (49 KB)
  Total size of DFA:  83 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.17u 0.08s 10.25t   Elapsed:  00:00:05
  Total cpu time:  10.17u 0.08s 10.25t   Elapsed:  00:00:05
  Start:  Thu Aug 15 12:46:31 2013   End:  Thu Aug 15 12:46:36 2013

GO:0042048 "olfactory behavior" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0044432 "endoplasmic reticulum part" evidence=IDA

GO:0005790 "smooth endoplasmic reticulum" evidence=IDA

GO:0045169 "fusome" evidence=IDA

GO:0002121 "inter-male aggressive behavior" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	60
pfam02453	164	pfam02453, Reticulon, Reticulon	8e-06

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score = 39.9 bits (94), Expect = 8e-06
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAE 40
           G +  FT+P +YE  +  IDA +E  + K+ +
Sbjct: 133 GVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
KOG1792|consensus	230		99.68
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	99.21
COG4537	107	ComGC Competence protein ComGC [Intracellular traf	82.96

>KOG1792|consensus

Probab=99.68  E-value=6.8e-17  Score=108.68  Aligned_cols=55  Identities=31%  Similarity=0.504  Sum_probs=47.8

Q ss_pred             chHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCCCcch
Q psy17282          2 FSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKA----AIPIGKKEE   56 (60)
Q Consensus         2 flTLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~v~~----Kip~~~~k~   56 (60)
                      |+||+|+|++++||+|++||+|||+||.+++.+.++.+++++++.+    |+|+++.++
T Consensus       171 ~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  171 FLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             HHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            7999999999999999999999999999999887777776666665    599887664

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=99.21  E-value=2e-12  Score=80.30  Aligned_cols=39  Identities=31%  Similarity=0.545  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q psy17282          2 FSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAE   40 (60)
Q Consensus         2 flTLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~   40 (60)
                      ++||+|++++++||+|.+||+||++||++++++++++++
T Consensus       131 ~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~~~~~~~~~k  169 (169)
T PF02453_consen  131 FLTLLYLGVLGAFTVPKLYEKYQEEIDQYVAKVKEKVKK  169 (169)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999988764

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]

Probab=82.96  E-value=4.2  Score=24.93  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             CchHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Q psy17282          1 MFSVSISPGFVALFTLPKVYENNKATIDANLE   32 (60)
Q Consensus         1 ~flTLl~i~~v~~fTvP~lYekyq~~ID~~~~   32 (60)
                      |++-|++|+++++.++|-+=.+.+.-=|.-.+
T Consensus        19 MLiVLlIISiLlLl~iPNltKq~~~i~~kGc~   50 (107)
T COG4537          19 MLIVLLIISILLLLFIPNLTKQKEVIQDKGCE   50 (107)
T ss_pred             HHHHHHHHHHHHHHHccchhhhHHHHhcchHH
Confidence            67889999999999999998877766666433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d2pila_	158	Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}	85.74
d2axtl1	37	Photosystem II reaction center protein L, PsbL {Th	82.95

>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a+b)
fold: Pili subunits
superfamily: Pili subunits
family: Pilin
domain: Pilin Gc
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=85.74  E-value=1.2  Score=23.70  Aligned_cols=18  Identities=28%  Similarity=0.342  Sum_probs=15.9

Q ss_pred             chHHHHHHHHHHHhhHHH
Q psy17282          2 FSVSISPGFVALFTLPKV   19 (60)
Q Consensus         2 flTLl~i~~v~~fTvP~l   19 (60)
                      ..++.+||++.++.+|.+
T Consensus         7 lVViaIIgILaaia~P~~   24 (158)
T d2pila_           7 MIVIAIVGILAAVALPAY   24 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            568899999999999983

>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Photosystem II reaction center protein L, PsbL
family: PsbL-like
domain: Photosystem II reaction center protein L, PsbL
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=82.95  E-value=0.73  Score=21.29  Aligned_cols=20  Identities=15%  Similarity=0.394  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhhHHHHHhh
Q psy17282          4 VSISPGFVALFTLPKVYENN   23 (60)
Q Consensus         4 TLl~i~~v~~fTvP~lYeky   23 (60)
                      |-+|.|.++.|.+-+++..|
T Consensus        15 tsLy~GlLlifvl~vLFssY   34 (37)
T d2axtl1          15 TSLYLGLLLILVLALLFSSY   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            77899999999999998876