Psyllid ID: psy17286

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
cccccccHHHHcccccccccccccHHHHHHHccccEEEEEEcccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccEEEccccEEEEEEccEEEEEEcEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHccHHHHHHHcccccccc
ccccccccccHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHccccccccccHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEccHHHHHHHcccHHHHHHHHHHccccHHHHHcccccEcccccccEEcHHHcEEEEEccEEccccccccEcccccccccccEcEEEEEEccccHHHHHcccccHHHHHHHHHHHHHcccccccccHHccHHHHHHHHHHHHHHHHHHHc
msvlksdidkrkqisvrgiadveNVTTVKKYFNRHLHFTLVkdrnvatprdyyFVSSSIMSVLKSdidkrkqisvrgiadveNVTTVKKYFNRHLHFTLVkdrnvatprDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIkngeqteepddwlrygnpwekarpeymipvnfygrvaeigkgkkysycllrpkssiantRYLLFSVLffpavndgdYIQAVLDRNLAENisrvlypndnnfggkelRLKQEYFMCAATLQAEVL
msvlksdidkrkqisvrgiadvenvttvkkyfnrhlhftlvkdrnvatpRDYYFVSSSIMSvlksdidkrkqisvrgiadvenvttvkkyfnrhlhftlvkdrnvatPRDYYFALAYAVRDNLVSRWIRTqqhyfendpkrVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKngeqteepddwlRYGNPwekarpeymipVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
*************ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIK********DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL*****
************************VTTVKKYFNRHLHFTLVKDRNVATPRDYY******************************VTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
********DKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM************ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q9XTL9 844 Glycogen phosphorylase OS yes N/A 0.78 0.277 0.582 1e-87
Q9WUB3 842 Glycogen phosphorylase, m yes N/A 0.78 0.277 0.530 2e-76
P00489 843 Glycogen phosphorylase, m yes N/A 0.78 0.277 0.530 3e-76
P11217 842 Glycogen phosphorylase, m yes N/A 0.78 0.277 0.527 7e-76
O18751 842 Glycogen phosphorylase, m N/A N/A 0.78 0.277 0.524 1e-75
P79334 842 Glycogen phosphorylase, m yes N/A 0.78 0.277 0.524 1e-75
P11216 843 Glycogen phosphorylase, b no N/A 0.763 0.271 0.526 9e-75
P09812 842 Glycogen phosphorylase, m yes N/A 0.786 0.280 0.527 2e-74
Q5R5M6 843 Glycogen phosphorylase, b no N/A 0.763 0.271 0.526 3e-74
Q8HXW4 842 Glycogen phosphorylase, m N/A N/A 0.78 0.277 0.521 3e-74
>sp|Q9XTL9|PYG_DROME Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2 Back     alignment and function desciption
 Score =  323 bits (827), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/309 (58%), Positives = 199/309 (64%), Gaps = 75/309 (24%)

Query: 60  MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAV 119
           MS  +SD D+RKQISVRGIA+V NVT VKK FNRHLH+TLVKDRNV+T RDYYFALA  V
Sbjct: 1   MSKPQSDADRRKQISVRGIAEVGNVTEVKKNFNRHLHYTLVKDRNVSTLRDYYFALANTV 60

Query: 120 RDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ---KI 176
           +DN+V RWIRTQQHY+E DPKRVYYLSLEYYMGRSL NTMINLGIQS  +EAMYQ    I
Sbjct: 61  KDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTMINLGIQSECEEAMYQLGLDI 120

Query: 177 KNGE---------------------------------------------------QTEEP 185
           +N E                                                   Q EEP
Sbjct: 121 ENLEEMEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFAQKIKNGEQVEEP 180

Query: 186 DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKK-----------YSYCLLRPKSSIAN 234
           DDWLRYGNPWEKARPE+M+PVNFYGRV +  +GKK           Y   +    ++  N
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVNFYGRVIDTPEGKKWVDTQRVFAMPYDNPIPGYNNNHVN 240

Query: 235 TRYLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQE 287
           T  L        F++ FF   NDGDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQE
Sbjct: 241 TLRLWSAKSPIDFNLKFF---NDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQE 297

Query: 288 YFMCAATLQ 296
           YFMCAATLQ
Sbjct: 298 YFMCAATLQ 306
Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1
>sp|Q9WUB3|PYGM_MOUSE Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3 Back     alignment and function description
>sp|P00489|PYGM_RABIT Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3 Back     alignment and function description
>sp|P11217|PYGM_HUMAN Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6 Back     alignment and function description
>sp|O18751|PYGM_SHEEP Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3 Back     alignment and function description
>sp|P79334|PYGM_BOVIN Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3 Back     alignment and function description
>sp|P11216|PYGB_HUMAN Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5 Back     alignment and function description
>sp|P09812|PYGM_RAT Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5 Back     alignment and function description
>sp|Q5R5M6|PYGB_PONAB Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3 Back     alignment and function description
>sp|Q8HXW4|PYGM_MACFA Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
332024038 842 Glycogen phosphorylase [Acromyrmex echin 0.78 0.277 0.599 1e-91
310743896 852 glycogen phosphorylase [Marsupenaeus jap 0.78 0.274 0.582 1e-87
125985769 841 GA20213 [Drosophila pseudoobscura pseudo 0.78 0.278 0.582 4e-86
195034519 842 GH11425 [Drosophila grimshawi] gi|193904 0.78 0.277 0.579 5e-86
4689100 844 glycogen phosphorylase [Drosophila melan 0.78 0.277 0.582 7e-86
195470641 844 GE17935 [Drosophila yakuba] gi|194173716 0.78 0.277 0.582 7e-86
194854411 844 GG24830 [Drosophila erecta] gi|190660222 0.78 0.277 0.582 8e-86
24581010 844 glycogen phosphorylase, isoform A [Droso 0.78 0.277 0.582 8e-86
195433639 842 GK15132 [Drosophila willistoni] gi|19416 0.78 0.277 0.582 9e-86
195114628 842 GI14641 [Drosophila mojavensis] gi|19391 0.78 0.277 0.582 1e-85
>gi|332024038|gb|EGI64256.1| Glycogen phosphorylase [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 203/307 (66%), Gaps = 73/307 (23%)

Query: 60  MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAV 119
           MS+  SD +KRKQISVRGI DVENV   KK FNRHLH+TLVKDRNVAT RDY+FALA++V
Sbjct: 1   MSIPNSDHEKRKQISVRGIVDVENVGNFKKTFNRHLHYTLVKDRNVATSRDYFFALAHSV 60

Query: 120 RDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMY------ 173
           +DNLVSRWIRTQQHY+E DPKRVYYLSLEYYMGRSLQNTMINLGIQ A DEAMY      
Sbjct: 61  KDNLVSRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLQNTMINLGIQGACDEAMYQANIEE 120

Query: 174 ----------------------------------------------QKIKNGEQTEEPDD 187
                                                         QKIKNGEQ EEPDD
Sbjct: 121 LEELEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFAQKIKNGEQIEEPDD 180

Query: 188 WLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTR 236
           WLRYGNPWEKARPE+M+PVNFYG V +  +GKK+         P        K+++ NT 
Sbjct: 181 WLRYGNPWEKARPEFMLPVNFYGHVIDTSEGKKWVNTQVIFAMPYDSPIPGYKNNVVNTL 240

Query: 237 YLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYF 289
            L        F++ FF   NDGDYIQAV+DRNLAENISRVLYPNDN F GKELRLKQEYF
Sbjct: 241 RLWSAKSPIEFNLKFF---NDGDYIQAVIDRNLAENISRVLYPNDNFFEGKELRLKQEYF 297

Query: 290 MCAATLQ 296
           M AATLQ
Sbjct: 298 MVAATLQ 304

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|310743896|dbj|BAJ23879.1| glycogen phosphorylase [Marsupenaeus japonicus] Back     alignment and taxonomy information
>gi|125985769|ref|XP_001356648.1| GA20213 [Drosophila pseudoobscura pseudoobscura] gi|195147884|ref|XP_002014904.1| GL18703 [Drosophila persimilis] gi|54644973|gb|EAL33713.1| GA20213 [Drosophila pseudoobscura pseudoobscura] gi|194106857|gb|EDW28900.1| GL18703 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195034519|ref|XP_001988914.1| GH11425 [Drosophila grimshawi] gi|193904914|gb|EDW03781.1| GH11425 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|4689100|gb|AAD27759.1|AF073178_1 glycogen phosphorylase [Drosophila melanogaster] gi|4689102|gb|AAD27760.1|AF073179_1 glycogen phosphorylase [Drosophila melanogaster] gi|5305433|gb|AAD41649.1|AF073177_1 glycogen phosphorylase [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195470641|ref|XP_002087615.1| GE17935 [Drosophila yakuba] gi|194173716|gb|EDW87327.1| GE17935 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194854411|ref|XP_001968355.1| GG24830 [Drosophila erecta] gi|190660222|gb|EDV57414.1| GG24830 [Drosophila erecta] Back     alignment and taxonomy information
>gi|24581010|ref|NP_722762.1| glycogen phosphorylase, isoform A [Drosophila melanogaster] gi|78706832|ref|NP_001027219.1| glycogen phosphorylase, isoform B [Drosophila melanogaster] gi|14916636|sp|Q9XTL9.2|PYG_DROME RecName: Full=Glycogen phosphorylase gi|5679162|gb|AAD46887.1|AF160947_1 LD24485p [Drosophila melanogaster] gi|7296006|gb|AAF51303.1| glycogen phosphorylase, isoform A [Drosophila melanogaster] gi|72151016|gb|AAZ66442.1| glycogen phosphorylase, isoform B [Drosophila melanogaster] gi|220943620|gb|ACL84353.1| GlyP-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195433639|ref|XP_002064815.1| GK15132 [Drosophila willistoni] gi|194160900|gb|EDW75801.1| GK15132 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195114628|ref|XP_002001869.1| GI14641 [Drosophila mojavensis] gi|193912444|gb|EDW11311.1| GI14641 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
WB|WBGene00020696 882 T22F3.3 [Caenorhabditis elegan 0.46 0.156 0.652 6.9e-82
UNIPROTKB|F1P832 842 PYGM "Phosphorylase" [Canis lu 0.446 0.159 0.701 6.3e-81
MGI|MGI:97830 842 Pygm "muscle glycogen phosphor 0.446 0.159 0.701 3.5e-80
UNIPROTKB|G3V8V3 842 Pygm "Phosphorylase" [Rattus n 0.446 0.159 0.701 3.5e-80
UNIPROTKB|P11216 843 PYGB "Glycogen phosphorylase, 0.43 0.153 0.682 5.7e-80
UNIPROTKB|E1C0G9 839 PYGB "Phosphorylase" [Gallus g 0.446 0.159 0.671 1.1e-79
ZFIN|ZDB-GENE-040928-2 843 pygb "phosphorylase, glycogen; 0.446 0.158 0.664 4.4e-79
RGD|3461 842 Pygm "phosphorylase, glycogen, 0.446 0.159 0.694 9.4e-79
RGD|3460 838 Pygb "phosphorylase, glycogen; 0.43 0.153 0.674 1.4e-78
UNIPROTKB|P53534 838 Pygb "Glycogen phosphorylase, 0.43 0.153 0.674 1.4e-78
WB|WBGene00020696 T22F3.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
 Identities = 90/138 (65%), Positives = 114/138 (82%)

Query:    56 SSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFAL 115
             S  + S++ +D D+RKQISVRGIA VENV+ +KK FNRHLHF+++KDRNVAT RDYYFAL
Sbjct:    31 SPKLFSMITNDHDRRKQISVRGIAQVENVSNIKKAFNRHLHFSIIKDRNVATDRDYYFAL 90

Query:   116 AYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQK 175
             A  VRD+LVSRWIRTQQHY++ DPKRVYYLSLE+YMGR+L NTM+NLGIQ+ +DEA+YQ 
Sbjct:    91 ANTVRDHLVSRWIRTQQHYYDKDPKRVYYLSLEFYMGRTLSNTMMNLGIQATVDEALYQL 150

Query:   176 IKNGEQTEEPDDWLRYGN 193
               + E+ +E ++    GN
Sbjct:   151 GLDIEELQEIEEDAGLGN 168
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0008184 "glycogen phosphorylase activity" evidence=IEA
GO:0004645 "phosphorylase activity" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0051301 "cell division" evidence=IMP
GO:0000910 "cytokinesis" evidence=IMP
UNIPROTKB|F1P832 PYGM "Phosphorylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:97830 Pygm "muscle glycogen phosphorylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V8V3 Pygm "Phosphorylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P11216 PYGB "Glycogen phosphorylase, brain form" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0G9 PYGB "Phosphorylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040928-2 pygb "phosphorylase, glycogen; brain" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|3461 Pygm "phosphorylase, glycogen, muscle" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|3460 Pygb "phosphorylase, glycogen; brain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P53534 Pygb "Glycogen phosphorylase, brain form" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P00489PYGM_RABIT2, ., 4, ., 1, ., 10.53070.780.2775yesN/A
Q9XTL9PYG_DROME2, ., 4, ., 1, ., 10.58250.780.2772yesN/A
P79334PYGM_BOVIN2, ., 4, ., 1, ., 10.52420.780.2779yesN/A
Q9WUB3PYGM_MOUSE2, ., 4, ., 1, ., 10.53070.780.2779yesN/A
P11217PYGM_HUMAN2, ., 4, ., 1, ., 10.52750.780.2779yesN/A
P09812PYGM_RAT2, ., 4, ., 1, ., 10.52760.78660.2802yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
cd04300 797 cd04300, GT1_Glycogen_Phosphorylase, This is a fam 3e-79
TIGR02093 794 TIGR02093, P_ylase, glycogen/starch/alpha-glucan p 9e-67
pfam00343 712 pfam00343, Phosphorylase, Carbohydrate phosphoryla 9e-42
PRK14986 815 PRK14986, PRK14986, glycogen phosphorylase; Provis 2e-40
COG0058 750 COG0058, GlgP, Glucan phosphorylase [Carbohydrate 7e-37
PRK14985 798 PRK14985, PRK14985, maltodextrin phosphorylase; Pr 2e-16
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases Back     alignment and domain information 
 Score =  255 bits (654), Expect = 3e-79
 Identities = 112/284 (39%), Positives = 141/284 (49%), Gaps = 77/284 (27%)

Query: 88  KKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSL 147
           KK    HL +TL KD   AT RD Y ALAYAVRD LV RW RTQQ+Y++ D KRVYYLSL
Sbjct: 1   KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60

Query: 148 EYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTE--EPD------------------- 186
           E+ MGR L N ++NLG+   + EA+ +   + E  E  EPD                   
Sbjct: 61  EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120

Query: 187 ---------------------------------DWLRYGNPWEKARPEYMIPVNFYGRVA 213
                                            +WLRYGNPWE  RP+  +PV F GRV 
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVE 180

Query: 214 EIGKGKKYSYCLLRPKSSIA---------------NT-RYLLFSV-----LFFPAVNDGD 252
               G +     +  ++ +A               NT R  L+S          A N GD
Sbjct: 181 HYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLR--LWSAEASEEFDLDAFNRGD 238

Query: 253 YIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
           YI+AV ++N AENIS+VLYPND+   GKELRLKQ+YF  +A+LQ
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQ 282

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase Back     alignment and domain information
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
KOG2099|consensus 843 100.0
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 100.0
PRK14986 815 glycogen phosphorylase; Provisional 100.0
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 100.0
PRK14985 798 maltodextrin phosphorylase; Provisional 100.0
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 100.0
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 99.57
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 99.43
KOG2099|consensus 843 97.84
PRK14986 815 glycogen phosphorylase; Provisional 92.82
PRK14985 798 maltodextrin phosphorylase; Provisional 90.46
PF11897118 DUF3417: Protein of unknown function (DUF3417); In 83.47
>KOG2099|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-93  Score=711.00  Aligned_cols=240  Identities=71%  Similarity=1.104  Sum_probs=234.0

Q ss_pred             CCCCCCchhhhcceeeeccccccchHHHHHhhhcccceEEecccCCCCccceeeeeccccccccCcHhhhhhhhhhccCC
Q psy17286          1 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIAD   80 (300)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (300)
                      |+.|++|+++|||||+|||++|+||+++|++||||||||+||||||+||||||||+|                       
T Consensus         1 ~~~~~~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a-----------------------   57 (843)
T KOG2099|consen    1 MSKPLIDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALA-----------------------   57 (843)
T ss_pred             CCccccccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHH-----------------------
Confidence            789999999999999999999999999999999999999999999999999998877                       


Q ss_pred             CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHH
Q psy17286         81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMI  160 (300)
Q Consensus        81 ~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLi  160 (300)
                                                          .+|||.++.+|++|+++|++.++||||||||||||||+|+|.++
T Consensus        58 ------------------------------------~tvRD~Lv~~W~rTqqhy~~~dpKrvYYLSlEf~mGRaL~Ntm~  101 (843)
T KOG2099|consen   58 ------------------------------------HTVRDHLVGRWIRTQQHYYEKDPKRVYYLSLEFYMGRALQNTMI  101 (843)
T ss_pred             ------------------------------------HHHHHHHHHHHHHHHHHHhccCCceeeEeehHHhhhhHHHHHHH
Confidence                                                48999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecCc
Q psy17286        161 NLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEPD  186 (300)
Q Consensus       161 NLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~PD  186 (300)
                      ||||.+.|.|||.+                                                      +|.+|||+|.||
T Consensus       102 Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~~d  181 (843)
T KOG2099|consen  102 NLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEEPD  181 (843)
T ss_pred             hccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccchH
Confidence            99999999999998                                                      999999999999


Q ss_pred             ccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee---------cC--CCCcceeeEeecee-----cCCcCcCC
Q psy17286        187 DWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL---------RP--KSSIANTRYLLFSV-----LFFPAVND  250 (300)
Q Consensus       187 ~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~---------~P--~~~tVNtLRL~WsA-----Fdl~~fn~  250 (300)
                      +||++|||||+.|||.++||+|||+|+..++|.+|++++.         +|  +|++|||||| |||     |||..||.
T Consensus       182 dWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n~vntlRL-Wsaka~~df~l~~fN~  260 (843)
T KOG2099|consen  182 DWLRYGNPWEKARPEVMLPVHFYGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNNTVNTLRL-WSAKAPNDFDLKDFNV  260 (843)
T ss_pred             HHHHcCCchhhcCcceEeEEEEEEEEEeCCCcceeecceeEEEeccCCCCCCcccCcceeeee-eccCCCCCCCHHhccC
Confidence            9999999999999999999999999999999999999998         34  8999999999 999     99999999


Q ss_pred             chhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286        251 GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL  300 (300)
Q Consensus       251 GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~  300 (300)
                      |||++||.+++.||+||+||||||+..+||+||||||||+|||||||||+
T Consensus       261 Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIir  310 (843)
T KOG2099|consen  261 GDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIR  310 (843)
T ss_pred             chHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999984

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>KOG2099|consensus Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2pyd_A 843 The Crystal Structure Of Glycogen Phosphorylase In 2e-77
1pyg_A 842 Structural Basis For The Activation Of Glycogen Pho 3e-77
2g9q_A 842 The Crystal Structure Of The Glycogen Phosphorylase 3e-77
1noi_A 842 Complex Of Glycogen Phosphorylase With A Transition 4e-77
1z6p_A 842 Glycogen Phosphorylase Amp Site Inhibitor Complex L 4e-77
7gpb_A 842 Structural Mechanism For Glycogen Phosphorylase Con 4e-77
3nc4_A 841 The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbaz 4e-77
1c8l_A 842 Synergistic Inhibition Of Glycogen Phosphorylase A 1e-76
1gpa_A 842 Structural Mechanism For Glycogen Phosphorylase Con 1e-76
1z8d_A 842 Crystal Structure Of Human Muscle Glycogen Phosphor 2e-76
1abb_A 828 Control Of Phosphorylase B Conformation By A Modifi 1e-75
4ej2_A 825 Crystal Structure Of Gpb In Complex With Dk10 Lengt 2e-74
2gm9_A 825 Structure Of Rabbit Muscle Glycogen Phosphorylase I 2e-74
2ffr_A 825 Crystallographic Studies On N-Azido-Beta-D-Glucopyr 2e-74
2gj4_A 824 Structure Of Rabbit Muscle Glycogen Phosphorylase I 2e-74
1c50_A 830 Identification And Structural Characterization Of A 7e-74
1fc0_A 846 Human Liver Glycogen Phosphorylase Complexed With N 2e-73
1xoi_A 846 Human Liver Glycogen Phosphorylase A Complexed With 2e-73
1em6_A 847 Human Liver Glycogen Phosphorylase A Complexed With 2e-73
2zb2_A 849 Human Liver Glycogen Phosphorylase A Complexed With 2e-73
1fa9_A 846 Human Liver Glycogen Phosphorylase A Complexed With 6e-73
3dds_A 848 Crystal Structure Of Glycogen Phosphorylase Complex 6e-73
2qll_A 847 Human Liver Glycogen Phosphorylase- Gl Complex Leng 7e-73
3ceh_A 809 Human Liver Glycogen Phosphorylase (Tense State) In 2e-66
1ygp_B 879 Phosphorylated Form Of Yeast Glycogen Phosphorylase 4e-20
1l5v_A 796 Crystal Structure Of The Maltodextrin Phosphorylase 8e-17
1qm5_A 796 Phosphorylase Recognition And Phosphorylysis Of Its 2e-16
1ahp_A 797 Oligosaccharide Substrate Binding In Escherichia Co 5e-16
2ecp_A 796 The Crystal Structure Of The E. Coli Maltodextrin P 5e-16
2c4m_A 796 Starch Phosphorylase: Structural Studies Explain Ox 9e-08
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex With Glucose At 100 K Length = 843 Back     alignment and structure 
Iteration: 1

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/309 (53%), Positives = 188/309 (60%), Gaps = 75/309 (24%)
Query: 60  MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAV 119
           MS   SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ V
Sbjct: 1   MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 120 RDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN---------------------- 157
           RD+LV RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN                      
Sbjct: 61  RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 158 --------------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEP 185
                                     +M  LG+ +      Y      QKI  G Q EE 
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 186 DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIAN 234
           DDWLRYGNPWEKARPE+ +PV+FYGRV    +G K+      L  P        ++++ N
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 235 TRYLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQE 287
           T  L        F++  F   N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQE
Sbjct: 241 TMRLWSAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQE 297
Query: 288 YFMCAATLQ 296
           YF+ AATLQ
Sbjct: 298 YFVVAATLQ 306
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen Phosphorylase B By Adenosine Monophosphate Length = 842 Back     alignment and structure
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab Complex Length = 842 Back     alignment and structure
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State Analogue Nojirimycin Tetrazole And Phosphate In The T And R States Length = 842 Back     alignment and structure
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex Length = 842 Back     alignment and structure
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives To Glycogen Phosphorylase: A New Class Of Inhibitors Length = 841 Back     alignment and structure
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A Potential Antidiabetic Drug And Caffeine Length = 842 Back     alignment and structure
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842 Back     alignment and structure
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate Length = 828 Back     alignment and structure
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10 Length = 825 Back     alignment and structure
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Thienopyrrole Length = 825 Back     alignment and structure
>pdb|2FFR|A Chain A, Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D- Glucopyranosylamine Length = 825 Back     alignment and structure
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand Length = 824 Back     alignment and structure
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel Allosteric Binding Site Of Glycogen Phosphorylase B Length = 830 Back     alignment and structure
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846 Back     alignment and structure
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846 Back     alignment and structure
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847 Back     alignment and structure
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849 Back     alignment and structure
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846 Back     alignment and structure
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848 Back     alignment and structure
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847 Back     alignment and structure
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809 Back     alignment and structure
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase Complexed With Glucose-1-Phosphate Length = 796 Back     alignment and structure
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question Length = 796 Back     alignment and structure
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli Maltodextrin Phsphorylase Length = 797 Back     alignment and structure
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin Phosphorylase Complex Length = 796 Back     alignment and structure
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion- Dependent Kinetic Stability And Regulatory Control. Length = 796 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 5e-81
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 2e-75
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 4e-71
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 4e-70
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824 Back     alignment and structure
 Score =  260 bits (666), Expect = 5e-81
 Identities = 157/296 (53%), Positives = 181/296 (61%), Gaps = 73/296 (24%)

Query: 72  QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
           QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1   QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60

Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTE--EPDDWL 189
           QHY+E DPKR+YYLSLE+YMGR+LQNTM+NL +++A DEA YQ   + E+ E  E D  L
Sbjct: 61  QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120

Query: 190 ----------------------------RY------------------------GNPWEK 197
                                       RY                        GNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180

Query: 198 ARPEYMIPVNFYGRVAEIGKGKK---YSYCLLRP--------KSSIANT-RYLLFSV--- 242
           ARPE+ +PV+FYGRV    +G K       L  P        ++++ NT R  L+S    
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMR--LWSAKAP 238

Query: 243 --LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
                   N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 239 NDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 294
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796 Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 100.0
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 100.0
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 100.0
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 100.0
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 98.01
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 94.09
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 93.48
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 92.32
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
Probab=100.00  E-value=1.6e-70  Score=571.18  Aligned_cols=228  Identities=70%  Similarity=1.115  Sum_probs=210.3

Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeecccc
Q psy17286         72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYM  151 (300)
Q Consensus        72 ~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLm  151 (300)
                      |||++|++...++++|+++|.+||++++|+++.+||++++|.|||.+|||+++++|++|+++|.+.++|+||||||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~~~~~w~~t~~~~~~~~~k~vyYlS~Efl~   80 (824)
T 2gj4_A            1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYM   80 (824)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCEEE
T ss_pred             CcccccccccccHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEEchhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHhcCcHHHHHHHHHh------------------------------------------------------ccc
Q psy17286        152 GRSLQNTMINLGIQSAIDEAMYQ------------------------------------------------------KIK  177 (300)
Q Consensus       152 GR~L~NNLiNLGl~~~vkeaL~e------------------------------------------------------kI~  177 (300)
                      ||+|.|||+||||+++|+|||++                                                      +|.
T Consensus        81 gr~L~n~l~nlg~~~~~~~~l~~~g~~l~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~  160 (824)
T 2gj4_A           81 GRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIC  160 (824)
T ss_dssp             ECCHHHHHHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEE
T ss_pred             hhhhHHHHHHCCCHHHHHHHHHHhCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEee
Confidence            99999999999999999999998                                                      899


Q ss_pred             CCeeeecCcccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee---------cC--CCCcceeeEeecee----
Q psy17286        178 NGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL---------RP--KSSIANTRYLLFSV----  242 (300)
Q Consensus       178 dG~QvE~PD~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~---------~P--~~~tVNtLRL~WsA----  242 (300)
                      ||+|+|.||+||++|||||++||+.+++|+|||+|+...+|.+|++++.         +|  +|++|||||| |+|    
T Consensus       161 dG~Q~E~~d~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRl-W~a~~~~  239 (824)
T 2gj4_A          161 GGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRL-WSAKAPN  239 (824)
T ss_dssp             TTEEEEECCCTTTTCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEE-EEEECCC
T ss_pred             CCEEEEcCccccccCCcccccCCCceEEEEeCCEEEecCCCceecccceEEEeeccCCcCCCCCCceEEEEE-EEeecCc
Confidence            9999999999999999999999999999999999986566768999885         23  8899999999 999    


Q ss_pred             -cCCcCcCCchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286        243 -LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL  300 (300)
Q Consensus       243 -Fdl~~fn~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~  300 (300)
                       |||..||.|+|..|+.+++.+||||+||||||++++||+|||||||||||||+||||+
T Consensus       240 ~f~~~~fn~G~~~~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqdilr  298 (824)
T 2gj4_A          240 DFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR  298 (824)
T ss_dssp             ----------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhccCccHHHHHhcccchhhcCcCCCCCCCccchHhHhhhhhhhhhhhHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999973
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d2gj4a1 824 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit 6e-70
d1ygpa_ 876 c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas 2e-54
d1l5wa_ 796 c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E 6e-50
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  229 bits (585), Expect = 6e-70
 Identities = 155/295 (52%), Positives = 180/295 (61%), Gaps = 69/295 (23%)

Query: 72  QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
           QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1   QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60

Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSA------------------------ 167
           QHY+E DPKR+YYLSLE+YMGR+LQNTM+NL +++A                        
Sbjct: 61  QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120

Query: 168 ------------IDEA------------MY------QKIKNGEQTEEPDDWLRYGNPWEK 197
                       +D               Y      QKI  G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180

Query: 198 ARPEYMIPVNFYGRV-----------AEIGKGKKYSYCLLRPKSSIANTRYLLFSV---- 242
           ARPE+ +PV+FYGRV            ++     Y   +   ++++ NT  L  +     
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240

Query: 243 LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQA 297
                 N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ 
Sbjct: 241 FNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD 295
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 100.0
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 100.0
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 100.0
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 97.94
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 95.4
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure