Psyllid ID: psy17305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAESTK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccEEEEEccccccccEEEEEEccccccccccccccccccEEEEEccEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEccccEEEcccccccccccccccccEEccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccEEEEEccccccccEEEEEEcccccccccccccccccccEEEEccEEEEccccccccHHHHHHHHHHHHHHccccccEEEEEEEccEEEccccccccccHccHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccc
Coil and Loop (DISEMBL)
MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVsssvqhrpqtINMIHYFADKLKQLGATVEIcdignqtlpngesikyppvilgnlgndkakHTVLVYghldvqpaekedgwntepfvltlkdeklygrgasddkgpvLGWLHAIEAFQQtkknvpvnikevtgknvlllpmgasddgahsqnekidvrNYIEGTKLLAAYLYEISKVTQAELEEAESTK
Flexible Loop (DISEMBL)
MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDvqpaekedgwntePFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFqqtkknvpvnIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTqaeleeaestk
Low Complexity Region (SEG)
MASSAEYLAEISEYVESNKNKFIENLKEAVAIEsvsssvQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAESTK
Disordered region (IsUnstruct)
*************YV****NKFIENLKEAVAIESV****QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMG***********KIDVRNYIEGTKLLAAYLYEISKV************
Disordered Region (DISOPRED)
******Y*AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAES**
Disordered Region (DISEMBL)
********AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQA*********
Disordered Region (DISPRO)
****AEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAESTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q3ZC84	475	Cytosolic non-specific di	yes	N/A	0.690	0.324	0.519	6e-46
Q96KP4	475	Cytosolic non-specific di	yes	N/A	0.690	0.324	0.5	2e-44
Q5R432	475	Cytosolic non-specific di	yes	N/A	0.690	0.324	0.493	9e-44
Q6Q0N1	475	Cytosolic non-specific di	yes	N/A	0.690	0.324	0.487	2e-43
Q9D1A2	475	Cytosolic non-specific di	yes	N/A	0.690	0.324	0.480	3e-43
Q66HG3	492	Beta-Ala-His dipeptidase	no	N/A	0.699	0.317	0.487	8e-42
Q8BUG2	492	Beta-Ala-His dipeptidase	no	N/A	0.739	0.335	0.479	3e-41
Q96KN2	507	Beta-Ala-His dipeptidase	no	N/A	0.708	0.311	0.487	4e-41
Q5AKA5	485	Cys-Gly metallodipeptidas	N/A	N/A	0.726	0.334	0.476	5e-38
Q9P6I2	476	Cys-Gly metallodipeptidas	yes	N/A	0.690	0.323	0.435	2e-36

>sp|Q3ZC84|CNDP2_BOVIN Cytosolic non-specific dipeptidase OS=Bos taurus GN=CNDP2 PE=2 SV=1

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 116/156 (74%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +YV+ N++++++ L E VAI+SVS+  + R +   M+   A  +KQLG +V++ D
Sbjct: 4   LTTLFKYVDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADIKQLGGSVQLVD 63

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  +D 
Sbjct: 64  IGTQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           KL+GRGA+DDKGPV GW++A+EAFQ+TK+ VPVN++
Sbjct: 124 KLFGRGATDDKGPVAGWINALEAFQKTKQEVPVNVR 159

Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 8

>sp|Q96KP4|CNDP2_HUMAN Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 115/156 (73%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +Y++ N++++I+ L + VAI+SVS+  + R +   M+   A  +KQLG +VE+ D
Sbjct: 4   LTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVD 63

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  +D 
Sbjct: 64  IGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 124 KLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVR 159

Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly. Isoform 2 may be play a role as tumor suppressor in hepatocellular carcinoma (HCC) cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 8

>sp|Q5R432|CNDP2_PONAB Cytosolic non-specific dipeptidase OS=Pongo abelii GN=CNDP2 PE=2 SV=1

 Score =  176 bits (447), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 115/156 (73%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +Y++ N++++I+ L + VAI+SVS+  + R +   M+   A  +KQLG +VE+ D
Sbjct: 4   LTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVD 63

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  +D 
Sbjct: 64  IGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           KL+GRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 124 KLHGRGSTDDKGPVAGWINALEAYQKTDQEIPVNVR 159

Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 8

>sp|Q6Q0N1|CNDP2_RAT Cytosolic non-specific dipeptidase OS=Rattus norvegicus GN=Cndp2 PE=1 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 114/156 (73%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +Y++ N+++F++ L E VAI+SVS+  + R +   M    A  +++LG +VE+ D
Sbjct: 4   LKAVFQYIDENQDRFVKKLAEWVAIQSVSAWPEKRGEIRRMTEAAAADVQRLGGSVELVD 63

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  ++ 
Sbjct: 64  IGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREG 123

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 124 KLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 159

Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 8

>sp|Q9D1A2|CNDP2_MOUSE Cytosolic non-specific dipeptidase OS=Mus musculus GN=Cndp2 PE=1 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 115/156 (73%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +Y++ N++++++ L E VAI+SVS+  + R +   M+   A  +++LG +VE+ D
Sbjct: 4   LKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVD 63

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  ++ 
Sbjct: 64  IGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREG 123

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 124 KLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 159

Hydrolyzes a variety of dipeptides including L-carnosine. Has a strong preference for Cys-Gly.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 8

>sp|Q66HG3|CNDP1_RAT Beta-Ala-His dipeptidase OS=Rattus norvegicus GN=Cndp1 PE=2 SV=1

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 117/162 (72%), Gaps = 6/162 (3%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQT----INMIHYFADKLKQLGATV 63
           L ++ +Y++ ++++F++ LKE VAIES   SVQ  P+       M+   ADKL+ LGA V
Sbjct: 10  LEKLFQYIDLHQDEFVQTLKEWVAIES--DSVQPMPRLRQELFRMMALAADKLRNLGARV 67

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           +  D+G+Q +P+G+S+  PP+IL  LGND  K +V  YGHLDVQPA+KEDGW T+P+ LT
Sbjct: 68  DSVDLGSQQMPDGQSLPTPPIILAELGNDPKKPSVCFYGHLDVQPAQKEDGWLTDPYTLT 127

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
             D KLYGRGA+D+KGPVL W++A+  F+  ++++PVN+K +
Sbjct: 128 EVDGKLYGRGATDNKGPVLAWINAVSTFRALQQDLPVNVKFI 169

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q8BUG2|CNDP1_MOUSE Beta-Ala-His dipeptidase OS=Mus musculus GN=Cndp1 PE=2 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 119/169 (70%), Gaps = 4/169 (2%)

Query: 1   MASSAE--YLAEISEYVESNKNKFIENLKEAVAIES--VSSSVQHRPQTINMIHYFADKL 56
           M SSA    L ++  Y++ ++++F++ LKE VAIES  V    + R +   M+   ADKL
Sbjct: 1   MFSSAHSGLLEKLFHYIDLHQDEFVQTLKEWVAIESDSVQPVPRLRQKLFQMMALAADKL 60

Query: 57  KQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWN 116
           + LGA VE  D+G+Q +P+G+S+  PP++L  LG+D  K TV  YGHLDVQPA+K+DGW 
Sbjct: 61  RNLGAGVESIDLGSQQMPDGQSLPIPPILLAELGSDPEKPTVCFYGHLDVQPAQKDDGWL 120

Query: 117 TEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           T+P+ LT  D KLYGRGA+D+KGPVL W++A+  F+  ++++PVNIK +
Sbjct: 121 TDPYTLTEVDGKLYGRGATDNKGPVLAWINAVSTFRALQQDLPVNIKFI 169

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q96KN2|CNDP1_HUMAN Beta-Ala-His dipeptidase OS=Homo sapiens GN=CNDP1 PE=1 SV=4

 Score =  167 bits (424), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 115/160 (71%), Gaps = 2/160 (1%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIES--VSSSVQHRPQTINMIHYFADKLKQLGATVEI 65
           L ++ +Y++ ++++F++ LKE VAIES  V    + R +   M+   AD L++LGA V  
Sbjct: 35  LEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVAS 94

Query: 66  CDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLK 125
            D+G Q LP+G+S+  PP+IL  LG+D  K TV  YGHLDVQPA++ DGW T+P+VLT  
Sbjct: 95  VDMGPQQLPDGQSLPIPPIILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV 154

Query: 126 DEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           D KLYGRGA+D+KGPVL W++A+ AF+  ++++PVNIK +
Sbjct: 155 DGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFI 194

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q5AKA5|DUG1_CANAL Cys-Gly metallodipeptidase DUG1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DUG1 PE=1 SV=1

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 8/170 (4%)

Query: 1   MASSAEY----LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKL 56
           M++S  Y    L  + + +E  K KFIE L++A+AI SVSS    RP+ + M ++  D+L
Sbjct: 1   MSTSTTYEKLPLQPLFDTIEELKPKFIERLQKAIAIPSVSSDESLRPKVVEMANFLVDEL 60

Query: 57  KQLGAT-VEICDIGNQTLP-NGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDG 114
           K LG T +++ ++G Q  P    +++ PP++LG  GND AK TVLVYGH DVQPA K+DG
Sbjct: 61  KTLGFTDIQLKELGTQPPPVQDANLQLPPIVLGRFGNDPAKKTVLVYGHYDVQPALKDDG 120

Query: 115 WNTEPFVLTLKDEK--LYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           W TEPF +    EK  LYGRG++DDKGPV+GWL+ IEA  +    +PVN+
Sbjct: 121 WKTEPFTMHYDKEKEILYGRGSTDDKGPVVGWLNVIEAHNKLGWELPVNL 170

Catalytic component of the GSH degradosomal complex involved in the degradation of glutathione (GSH) and other peptides containing a gamma-glu-X bond. Functions also as a dipeptidase with high specificity for Cys-Gly and no activity toward tri- or tetrapeptides.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9P6I2|DUG1_SCHPO Cys-Gly metallodipeptidase dug1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dug1 PE=2 SV=2

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L ++ E ++  K++F+  L  AV+I SVS+ V  RP+ + M  +   +  +LGA +E  D
Sbjct: 5   LDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKRD 64

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG   + +G+ +  PP++LG  GND +K TVL+Y H DVQPA  EDGW+T+PF LT+ ++
Sbjct: 65  IGYHQM-DGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 123

Query: 128 -KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
            +++GRGA+DDKGP++GW+ AIEA ++   + PVN+
Sbjct: 124 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNL 159

Catalytic component of the GSH degradosomal complex involved in the degradation of glutathione (GSH) and other peptides containing a gamma-glu-X bond. Has a Gly-Cys dipeptidase activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
170064276	480	glutamate carboxypeptidase [Culex quinqu	0.708	0.329	0.601	2e-50
157120235	483	glutamate carboxypeptidase [Aedes aegypt	0.735	0.339	0.579	4e-50
321469667	474	hypothetical protein DAPPUDRAFT_303911 [	0.699	0.329	0.594	9e-50
332373434	477	unknown [Dendroctonus ponderosae]	0.708	0.331	0.613	2e-49
312370763	483	hypothetical protein AND_23078 [Anophele	0.708	0.327	0.588	2e-48
158285341	484	AGAP007619-PA [Anopheles gambiae str. PE	0.708	0.326	0.582	3e-48
193657361	478	PREDICTED: cytosolic non-specific dipept	0.721	0.336	0.567	5e-48
242022308	484	Cytosolic nonspecific dipeptidase, putat	0.681	0.314	0.578	6e-48
291244614	214	PREDICTED: Patterned Expression Site fam	0.717	0.747	0.543	6e-48
345494946	477	PREDICTED: cytosolic non-specific dipept	0.708	0.331	0.556	8e-48

>gi|170064276|ref|XP_001867458.1| glutamate carboxypeptidase [Culex quinquefasciatus] gi|167881720|gb|EDS45103.1| glutamate carboxypeptidase [Culex quinquefasciatus]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 122/158 (77%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  +  ++++NK K+I  L E VAI+SVS+  + RP+   M+++ AD+L+ LGAT+E+ D
Sbjct: 9   LKTLFSHIDANKAKYIAALAETVAIKSVSAWPESRPEIFRMVNWVADRLRTLGATIELAD 68

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +G QTLP+G  I  P VILG LGND AK TV++YGHLDVQPA  EDGW++EPFVLT +D 
Sbjct: 69  VGKQTLPDGRVIDLPNVILGTLGNDPAKKTVVLYGHLDVQPALLEDGWDSEPFVLTERDG 128

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KLYGRGASDDKGPVLGW+HAIEAFQ   + VPVN+K V
Sbjct: 129 KLYGRGASDDKGPVLGWIHAIEAFQAIGEPVPVNLKFV 166

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120235|ref|XP_001653563.1| glutamate carboxypeptidase [Aedes aegypti] gi|108883076|gb|EAT47301.1| AAEL001588-PA [Aedes aegypti]

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 125/164 (76%)

Query: 2   ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA 61
           A+  + L  +  ++++NK+K+I  L EAVAI+SVS+    RP+   M+++ AD+LK LG+
Sbjct: 6   AALPDVLKNLFSHIDANKSKYISALAEAVAIKSVSAWPDSRPEIFRMVNWVADRLKALGS 65

Query: 62  TVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV 121
           TVE+ D+G QT P+G  +  P VILG LGND AK TV++YGHLDVQPA  EDGW+TEPFV
Sbjct: 66  TVELADVGKQTFPDGRVLDLPNVILGTLGNDPAKKTVVLYGHLDVQPAILEDGWDTEPFV 125

Query: 122 LTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           LT KD KL+GRGASDDKGPVLGW+HAIEA+Q   + +PVN+K V
Sbjct: 126 LTEKDGKLFGRGASDDKGPVLGWIHAIEAYQAIGEPLPVNLKFV 169

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469667|gb|EFX80646.1| hypothetical protein DAPPUDRAFT_303911 [Daphnia pulex]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 122/158 (77%)

Query: 6   EYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEI 65
           E L  +  Y++SNK KFI+NL EAVAI+SVS+  + RP+   M+ + A KL+ LGAT E+
Sbjct: 3   EALKPVFSYIDSNKGKFIKNLDEAVAIKSVSAWPETRPEIFKMVKWVAAKLELLGATTEL 62

Query: 66  CDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLK 125
            D+G Q + +G  +  PPV+ G LG+D  K TV+VYGHLDVQPA KEDGW+T+PFVLT  
Sbjct: 63  KDVGKQKMHDGSILDLPPVLFGKLGSDPNKKTVMVYGHLDVQPALKEDGWDTDPFVLTEV 122

Query: 126 DEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           D KLYGRG++DDKGPVLGW+HAIEAFQQT +++PVN+K
Sbjct: 123 DGKLYGRGSTDDKGPVLGWIHAIEAFQQTGQDLPVNLK 160

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373434|gb|AEE61858.1| unknown [Dendroctonus ponderosae]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 120/158 (75%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  +   ++ NK K+IENL+EAVAI+SVS+  Q+RP    MI + ADKL+ LGATV+I D
Sbjct: 7   LTNLFRKIDENKLKYIENLREAVAIKSVSAWPQNRPDVKRMIEWAADKLRALGATVDIRD 66

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           IG Q L +G  I  PPV+LG LG D  K TVLVYGHLDVQPA K+DGW+TEPFVLT KD 
Sbjct: 67  IGRQKLDDGSEIPLPPVLLGTLGTDPKKKTVLVYGHLDVQPALKDDGWDTEPFVLTEKDG 126

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KL+GRGASDDKGPV+GW+HA+EA+     ++PVN+K V
Sbjct: 127 KLFGRGASDDKGPVVGWIHALEAYAAIGADIPVNLKFV 164

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370763|gb|EFR19090.1| hypothetical protein AND_23078 [Anopheles darlingi]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 119/158 (75%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L ++  ++++N+ K+IE L+EAVAI+SVS+    RP+   M+ + AD+LK+LGATVE+ D
Sbjct: 10  LQKLFSHIDANRTKYIEALREAVAIKSVSAWPDSRPEIFRMVDWVADRLKKLGATVELAD 69

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +G Q L +G  +  P VILG LG D AK TV +YGHLDVQPA  EDGW TEPFVLT KD 
Sbjct: 70  VGKQKLSDGRELNLPKVILGVLGTDPAKKTVCLYGHLDVQPAILEDGWATEPFVLTEKDG 129

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KL+GRG+SDDKGPVLGWLHAIE FQ   + +PVN+K V
Sbjct: 130 KLFGRGSSDDKGPVLGWLHAIEGFQAIGEPLPVNLKFV 167

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285341|ref|XP_308252.4| AGAP007619-PA [Anopheles gambiae str. PEST] gi|157019945|gb|EAA03960.4| AGAP007619-PA [Anopheles gambiae str. PEST]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 121/158 (76%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L ++  ++++NK+K+I+ L+EAVAI+SVS+  + RP+   M+ + A++L++LGATVE+ D
Sbjct: 10  LTKLFSHIDANKSKYIDALREAVAIKSVSAWPESRPEIFRMVEWVAERLRKLGATVELAD 69

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +G Q L +G  +  P VILG LG D AK TV +YGHLDVQPA  EDGW TEPFVLT KD 
Sbjct: 70  VGKQKLSDGRELDLPKVILGVLGTDPAKKTVCLYGHLDVQPAILEDGWATEPFVLTEKDG 129

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KL+GRG+SDDKGPVLGWLHAIE FQ   + +PVNIK V
Sbjct: 130 KLFGRGSSDDKGPVLGWLHAIEGFQAIGEPLPVNIKFV 167

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193657361|ref|XP_001949193.1| PREDICTED: cytosolic non-specific dipeptidase-like [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 4   SAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATV 63
           SA  L ++ +YV+ +KNKF+E+L +AV+I+S+S+  + R +   M+ +   KLK LGA V
Sbjct: 3   SAHPLTDVFQYVDDHKNKFVESLSQAVSIKSISADPELRNEVNKMMEWAQAKLKALGADV 62

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           E+CDIG QTL N + ++ PPV++G LG DK+K T+ +YGHLDVQPA+  DGW +EPFVLT
Sbjct: 63  ELCDIGQQTL-NEKKVQLPPVLIGTLGTDKSKTTICLYGHLDVQPADISDGWASEPFVLT 121

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
            ++ KLYGRG+SDDKGPVLGWLHAIEAFQ T  ++PVN+K V
Sbjct: 122 ERNGKLYGRGSSDDKGPVLGWLHAIEAFQNTGTDLPVNLKFV 163

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022308|ref|XP_002431582.1| Cytosolic nonspecific dipeptidase, putative [Pediculus humanus corporis] gi|212516890|gb|EEB18844.1| Cytosolic nonspecific dipeptidase, putative [Pediculus humanus corporis]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 118/152 (77%)

Query: 14  YVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL 73
           Y+ES+KN ++ NLKEAV I+SVS+   HR + + M+ +  +KLK+LG   E+ ++GN+ L
Sbjct: 20  YIESHKNDYVNNLKEAVGIKSVSAWPNHRGEVVKMVKWVEEKLKELGTKCELKELGNEPL 79

Query: 74  PNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRG 133
           P+G SI  PPV+LG LG D  K TVL+YGHLDVQPA+K DGW+TEPF L  K+EKLYGRG
Sbjct: 80  PDGSSIPLPPVLLGTLGEDPKKKTVLIYGHLDVQPADKSDGWDTEPFELIEKNEKLYGRG 139

Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           A+DDKGPVLGW+HA++AF+    ++PVNIK +
Sbjct: 140 ATDDKGPVLGWIHALQAFKGIHLDIPVNIKFI 171

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291244614|ref|XP_002742190.1| PREDICTED: Patterned Expression Site family member (pes-9)-like, partial [Saccoglossus kowalevskii]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 119/160 (74%)

Query: 4   SAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATV 63
           +AE+L +   Y++ +++ ++E LK+AVAI+SVS+  + RP+   M+   A +L+ LG TV
Sbjct: 55  AAEFLPKFFSYIDEHQDLYVERLKDAVAIQSVSAWPEKRPEIKKMVESVAKQLETLGGTV 114

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           E+ DIG Q LP+G  I  PP++LG LGND  K T+ +YGHLDVQPA K DGW+TEPFVLT
Sbjct: 115 ELVDIGMQKLPDGTEIPLPPILLGQLGNDPKKKTICIYGHLDVQPAAKSDGWDTEPFVLT 174

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             D KLYGRG++DDKGPVL WLH IEA+Q+  +++PVN K
Sbjct: 175 EVDGKLYGRGSTDDKGPVLAWLHVIEAYQKLGRDIPVNCK 214

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|345494946|ref|XP_001604790.2| PREDICTED: cytosolic non-specific dipeptidase-like [Nasonia vitripennis]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 120/158 (75%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L ++ ++++SNK ++I+NL++ VAI+SVS+  + R + I M+ +   K KQLGAT E+ D
Sbjct: 7   LQKLFKHIDSNKTRYIDNLRQVVAIKSVSAWPESRDEIIKMMKWAETKFKQLGATTELAD 66

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +G Q LPNG+ I  PP +LG LG D  K TVL+YGHLDVQPA KEDGW+TEPF L  KDE
Sbjct: 67  LGTQKLPNGKEIPLPPALLGTLGTDPKKKTVLIYGHLDVQPALKEDGWDTEPFELVEKDE 126

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KLYGRG++DDKGPVL WLHA++ +Q   +++PVN+K V
Sbjct: 127 KLYGRGSTDDKGPVLCWLHALQGYQALGEDIPVNVKFV 164

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
UNIPROTKB|F1SNL7	475	LOC100621569 "Uncharacterized	0.699	0.328	0.525	9.9e-62
UNIPROTKB|Q3ZC84	475	CNDP2 "Cytosolic non-specific	0.699	0.328	0.5	2.6e-61
FB|FBgn0259979	478	CG17337 [Drosophila melanogast	0.721	0.336	0.537	4.2e-61
UNIPROTKB|E2R134	473	CNDP2 "Uncharacterized protein	0.699	0.329	0.506	8.8e-61
UNIPROTKB|Q96KP4	475	CNDP2 "Cytosolic non-specific	0.699	0.328	0.480	2.6e-59
MGI|MGI:1913304	475	Cndp2 "CNDP dipeptidase 2 (met	0.699	0.328	0.461	2.3e-58
RGD|1305827	475	Cndp2 "CNDP dipeptidase 2 (met	0.699	0.328	0.467	2.3e-58
UNIPROTKB|F1P463	475	CNDP2 "Uncharacterized protein	0.699	0.328	0.487	1.6e-57
UNIPROTKB|F1P472	479	CNDP2 "Uncharacterized protein	0.699	0.325	0.487	1.6e-57
ZFIN|ZDB-GENE-030131-5499	474	cndp2 "CNDP dipeptidase 2 (met	0.704	0.331	0.458	2.6e-57

UNIPROTKB|F1SNL7 LOC100621569 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 444 (161.4 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 82/156 (52%), Positives = 112/156 (71%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             LA + +Y++ N++++I+ L E VAI+      + R +   M+   A  + QLG +VE+ D
Sbjct:     4 LAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVELVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IGNQ LP+G  I  PP++LG LG+D  K TV VYGHLDVQPA  EDGW++EPF L  +D 
Sbjct:    64 IGNQKLPDGSEIPLPPILLGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRGA+DDKGPV GW++A+EAFQ+T + VPVNI+
Sbjct:   124 KLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIR 159

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q3ZC84 CNDP2 "Cytosolic non-specific dipeptidase" [Bos taurus (taxid:9913)]

 Score = 437 (158.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 78/156 (50%), Positives = 112/156 (71%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +YV+ N++++++ L E VAI+      + R +   M+   A  +KQLG +V++ D
Sbjct:     4 LTTLFKYVDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADIKQLGGSVQLVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  +D 
Sbjct:    64 IGTQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KL+GRGA+DDKGPV GW++A+EAFQ+TK+ VPVN++
Sbjct:   124 KLFGRGATDDKGPVAGWINALEAFQKTKQEVPVNVR 159

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

FB|FBgn0259979 CG17337 [Drosophila melanogaster (taxid:7227)]

 Score = 438 (159.2 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 87/162 (53%), Positives = 110/162 (67%)

Query:     4 SAEYLAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATV 63
             S+E L +   +V+  K  +I  LK  V I+      + R +   M+ + AD+L+ LGA  
Sbjct:     5 SSE-LQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVEWTADRLRSLGAET 63

Query:    64 EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
             E+ D+G QTLPNG+ I  P V+LG LG D +K TVLVYGHLDVQPA KEDGWNT PF LT
Sbjct:    64 ELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLVYGHLDVQPALKEDGWNTNPFELT 123

Query:   124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
               D KL+GRGASDDKGPVL W+HAIEA+Q+    +PVN+K V
Sbjct:   124 EVDGKLFGRGASDDKGPVLCWIHAIEAYQKLNIALPVNVKFV 165

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|E2R134 CNDP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 439 (159.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 79/156 (50%), Positives = 111/156 (71%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +YV+ N++++I+ L E VAI+      + R +   M+   A  +KQLG +VE+ D
Sbjct:     4 LTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVELVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  +DGW++EPF L  +D 
Sbjct:    64 IGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALDDGWDSEPFTLVERDG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRGA+DDKGPV GWL+A+EAFQ+T + +PVN++
Sbjct:   124 KLYGRGATDDKGPVAGWLNALEAFQKTNQEIPVNVR 159

GO:0006508 "proteolysis" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|Q96KP4 CNDP2 "Cytosolic non-specific dipeptidase" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 75/156 (48%), Positives = 111/156 (71%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +Y++ N++++I+ L + VAI+      + R +   M+   A  +KQLG +VE+ D
Sbjct:     4 LTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  +D 
Sbjct:    64 IGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct:   124 KLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVR 159

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0004180 "carboxypeptidase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006750 "glutathione biosynthetic process" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1913304 Cndp2 "CNDP dipeptidase 2 (metallopeptidase M20 family)" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 72/156 (46%), Positives = 111/156 (71%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +Y++ N++++++ L E VAI+      + R +   M+   A  +++LG +VE+ D
Sbjct:     4 LKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  ++ 
Sbjct:    64 IGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct:   124 KLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 159

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISA

GO:0006508 "proteolysis" evidence=ISA;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IDA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=ISA;IDA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1305827 Cndp2 "CNDP dipeptidase 2 (metallopeptidase M20 family)" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 73/156 (46%), Positives = 110/156 (70%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +Y++ N+++F++ L E VAI+      + R +   M    A  +++LG +VE+ D
Sbjct:     4 LKAVFQYIDENQDRFVKKLAEWVAIQSVSAWPEKRGEIRRMTEAAAADVQRLGGSVELVD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L  ++ 
Sbjct:    64 IGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct:   124 KLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 159

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA;ISO

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1P463 CNDP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 417 (151.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 76/156 (48%), Positives = 110/156 (70%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +Y++ +++ +++ L E VAI+      + R +  +M+   A  +++LG T ++ D
Sbjct:     4 LDTLFKYIDEHQDLYVKRLAEWVAIQSVSAWPEKRAEIRHMMEVAAKDIERLGGTAQLMD 63

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP+ILG LG+D  K TV VYGHLDVQPA  EDGW++EPF L  +D 
Sbjct:    64 IGKQKLPDGSEIPLPPIILGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDG 123

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRG++DDKGPVL WL+A+EA+Q+T ++ PVNIK
Sbjct:   124 KLYGRGSTDDKGPVLAWLNALEAYQKTNQDFPVNIK 159

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1P472 CNDP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 417 (151.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 76/156 (48%), Positives = 110/156 (70%)

Query:     8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEICD 67
             L  + +Y++ +++ +++ L E VAI+      + R +  +M+   A  +++LG T ++ D
Sbjct:     8 LDTLFKYIDEHQDLYVKRLAEWVAIQSVSAWPEKRAEIRHMMEVAAKDIERLGGTAQLMD 67

Query:    68 IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
             IG Q LP+G  I  PP+ILG LG+D  K TV VYGHLDVQPA  EDGW++EPF L  +D 
Sbjct:    68 IGKQKLPDGSEIPLPPIILGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDG 127

Query:   128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             KLYGRG++DDKGPVL WL+A+EA+Q+T ++ PVNIK
Sbjct:   128 KLYGRGSTDDKGPVLAWLNALEAYQKTNQDFPVNIK 163

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-030131-5499 cndp2 "CNDP dipeptidase 2 (metallopeptidase M20 family)" [Danio rerio (taxid:7955)]

 Score = 416 (151.5 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
 Identities = 72/157 (45%), Positives = 110/157 (70%)

Query:     7 YLAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGATVEIC 66
             YL  + +YV+ ++N+++E L + VA++      + R +   ++      +++LG TVE+ 
Sbjct:     3 YLPNLFKYVDEHQNEYVERLAQWVAVQSVSAWPEKRGEIKKIMEMAGKDIERLGGTVELV 62

Query:    67 DIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKD 126
             DIG Q LP+GE I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW+++PF+L  +D
Sbjct:    63 DIGMQKLPSGEEIPLPPIVLGRLGSDPGKKTVCIYGHLDVQPASIEDGWDSQPFILEERD 122

Query:   127 EKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
              K+YGRG++DDKGPVL W + IEA+Q+  + +P+NIK
Sbjct:   123 GKMYGRGSTDDKGPVLAWFNIIEAYQKIGQELPINIK 159

GO:0034701 "tripeptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016805 "dipeptidase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZC84	CNDP2_BOVIN	3, ., 4, ., 1, 3, ., 1, 8	0.5192	0.6905	0.3242	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.13	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	223
cd05676	466	cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp	7e-78
cd03893	428	cd03893, M20_Dipept_like, M20 Dipeptidases	2e-37
cd05680	437	cd05680, M20_dipept_like_3, Uncharacterized M20 Di	6e-34
cd05681	430	cd05681, M20_dipept_like_4, Uncharacterized M20 Di	7e-32
COG0624	409	COG0624, ArgE, Acetylornithine deacetylase/Succiny	2e-29
PRK08201	456	PRK08201, PRK08201, hypothetical protein; Provisio	1e-27
PRK07907	449	PRK07907, PRK07907, hypothetical protein; Provisio	1e-24
cd05676	466	cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp	3e-24
cd05677	434	cd05677, M20_dipept_like_DUG2_type, M20 Defective	2e-22
cd03888	453	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida	2e-21
cd05678	466	cd05678, M20_dipept_like_1, Uncharacterized M20 Di	3e-19
PRK06446	436	PRK06446, PRK06446, hypothetical protein; Provisio	7e-19
TIGR01910	375	TIGR01910, DapE-ArgE, acetylornithine deacetylase	2e-18
cd08659	365	cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo	1e-17
cd03873	237	cd03873, Zinc_peptidase_like, Zinc peptidases M18,	2e-16
pfam01546	310	pfam01546, Peptidase_M20, Peptidase family M20/M25	4e-16
PRK08651	394	PRK08651, PRK08651, succinyl-diaminopimelate desuc	5e-16
PRK08596	421	PRK08596, PRK08596, acetylornithine deacetylase; V	7e-16
PRK09104	464	PRK09104, PRK09104, hypothetical protein; Validate	7e-16
cd05679	447	cd05679, M20_dipept_like_2, Uncharacterized M20 Di	5e-15
cd03895	399	cd03895, M20_ArgE_DapE_like2, M20 Peptidases with	9e-15
cd03894	372	cd03894, M20_ArgE, M20 Peptidase acetylornithine d	9e-15
cd05675	426	cd05675, M20_yscS_like, M20 Peptidase, carboxypept	2e-14
PRK06915	422	PRK06915, PRK06915, acetylornithine deacetylase; V	2e-14
cd03891	366	cd03891, M20_DapE_proteobac, M20 Peptidase proteob	2e-14
PRK07318	466	PRK07318, PRK07318, dipeptidase PepV; Reviewed	1e-13
PRK07205	444	PRK07205, PRK07205, hypothetical protein; Provisio	2e-13
PRK13009	375	PRK13009, PRK13009, succinyl-diaminopimelate desuc	4e-13
PRK07079	469	PRK07079, PRK07079, hypothetical protein; Provisio	5e-13
cd08011	390	cd08011, M20_ArgE_DapE_like6, M20 Peptidases with	2e-12
TIGR01887	447	TIGR01887, dipeptidaselike, dipeptidase, putative	2e-12
TIGR01892	364	TIGR01892, AcOrn-deacetyl, acetylornithine deacety	4e-12
PRK07522	385	PRK07522, PRK07522, acetylornithine deacetylase; P	6e-12
PRK08554	438	PRK08554, PRK08554, peptidase; Reviewed	1e-11
PRK13004	399	PRK13004, PRK13004, peptidase; Reviewed	3e-11
cd05649	376	cd05649, M20_ArgE_DapE_like4, M20 Peptidases with	7e-11
PRK09133	472	PRK09133, PRK09133, hypothetical protein; Provisio	1e-10
TIGR01886	466	TIGR01886, dipeptidase, dipeptidase PepV	1e-10
cd05682	451	cd05682, M20_dipept_like_5, Uncharacterized M20 Di	1e-10
PRK06133	410	PRK06133, PRK06133, glutamate carboxypeptidase; Re	1e-10
TIGR01246	370	TIGR01246, dapE_proteo, succinyl-diaminopimelate d	2e-10
cd05674	441	cd05674, M20_yscS, M20 Peptidase, carboxypeptidase	9e-10
cd05650	393	cd05650, M20_ArgE_DapE_like1, M20 Peptidases with	1e-09
PRK06156	520	PRK06156, PRK06156, hypothetical protein; Provisio	1e-09
cd03885	363	cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox	1e-09
PRK13983	400	PRK13983, PRK13983, diaminopimelate aminotransfera	7e-09
PRK05111	383	PRK05111, PRK05111, acetylornithine deacetylase; P	1e-08
PRK08262	486	PRK08262, PRK08262, hypothetical protein; Provisio	5e-08
PRK06837	427	PRK06837, PRK06837, acetylornithine deacetylase; P	6e-08
cd03896	359	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar	9e-08
PRK13013	427	PRK13013, PRK13013, succinyl-diaminopimelate desuc	1e-07
PRK08588	377	PRK08588, PRK08588, succinyl-diaminopimelate desuc	1e-07
PRK07906	426	PRK07906, PRK07906, hypothetical protein; Provisio	3e-07
cd05653	341	cd05653, M20_ArgE_LysK, M20 Peptidase acetylornith	1e-06
cd05651	342	cd05651, M20_ArgE_DapE_like5, M20 Peptidases with	1e-06
cd08012	423	cd08012, M20_ArgE-related, M20 Peptidases with sim	2e-06
cd05680	437	cd05680, M20_dipept_like_3, Uncharacterized M20 Di	6e-06
TIGR03526	395	TIGR03526, selenium_YgeY, putative selenium metabo	6e-06
cd05652	335	cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases	8e-06
cd03893	428	cd03893, M20_Dipept_like, M20 Dipeptidases	2e-05
TIGR01880	400	TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid am	7e-05
cd05646	391	cd05646, M20_AcylaseI_like, M20 Aminoacylase-I lik	1e-04
PRK08737	364	PRK08737, PRK08737, acetylornithine deacetylase; P	2e-04
TIGR01902	336	TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-ace	3e-04
TIGR01900	351	TIGR01900, dapE-gram_pos, succinyl-diaminopimelate	4e-04
PRK04443	348	PRK04443, PRK04443, acetyl-lysine deacetylase; Pro	5e-04
cd05647	345	cd05647, M20_DapE_actinobac, M20 Peptidase actinob	6e-04
cd08013	377	cd08013, M20_ArgE_DapE_like3, M20 Peptidases with	7e-04

>gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase

 Score =  240 bits (616), Expect = 7e-78
 Identities = 92/151 (60%), Positives = 125/151 (82%), Gaps = 1/151 (0%)

Query: 13  EYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQT 72
           +Y++ N++++I+ L EAVAI SVS+  + RP+ I M+ + AD+LK+LGATVE+ D+G QT
Sbjct: 3   KYIDENQDEYIDRLAEAVAIPSVSADPEKRPEVIRMMEWVADRLKKLGATVELVDLGKQT 62

Query: 73  LPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGR 132
           LP GE +  PPVILG LG+D +K TVL+YGHLDVQPA+ EDGW+T+PF LT KD KLYGR
Sbjct: 63  LP-GEELPLPPVILGRLGSDPSKKTVLIYGHLDVQPAKLEDGWDTDPFTLTEKDGKLYGR 121

Query: 133 GASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           G++DDKGPVLGWL+AIEA+Q+  +++PVN+K
Sbjct: 122 GSTDDKGPVLGWLNAIEAYQKLGQDLPVNLK 152

Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466

>gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases

 Score =  134 bits (339), Expect = 2e-37
 Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 12/142 (8%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLPNGESIKY 81
           +E+LKE VAI SVS+      +      + AD LK+ G  TVEI D  +           
Sbjct: 1   LEDLKELVAIPSVSAPPFPPEEVRRAAEWVADLLKRAGFDTVEIVDTPDGA--------- 51

Query: 82  PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPV 141
            P +L +    +   TVL+Y H DVQPA  ED W+++PF LT +D +LYGRGA+DDKG +
Sbjct: 52  -PAVLAHRPAPEGAPTVLLYAHYDVQPAGDEDAWDSDPFTLTERDGRLYGRGAADDKGGI 110

Query: 142 LGWLHAIEAFQQTKKNVPVNIK 163
              L A+ A      ++PV +K
Sbjct: 111 AAHLAALRALGG-LGDLPVGVK 131

Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428

>gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases

 Score =  125 bits (317), Expect = 6e-34
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG-ATVEICDIGNQTLPNGESIKY 81
           +E L E + I S+S+   H         + A +L++ G   VEI +              
Sbjct: 1   LEELFELLRIPSISTDPAHAGDVRRAAEWLAARLREAGFEEVEILETPGH---------- 50

Query: 82  PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPV 141
            P++     +     TVLVYGH DVQP +  + W + PF  T++D ++Y RGASDDKG V
Sbjct: 51  -PIVYAEWLHAPGAPTVLVYGHYDVQPPDPLELWESPPFEPTIRDGRIYARGASDDKGQV 109

Query: 142 LGWLHAIEAFQQTKKNVPVNIK 163
              L A+EA       +PVN+K
Sbjct: 110 FTHLKALEALLAVTGRLPVNVK 131

Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437

>gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases

 Score =  119 bits (301), Expect = 7e-32
 Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 19/144 (13%)

Query: 22  FIENLKEAVAIESVSSSVQHR--PQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI 79
           ++E+L+E + I SVS+  Q+R   +T  ++    + L++LGA VEI       LP     
Sbjct: 1   YLEDLRELLRIPSVSA--QNRGIEETAELL---KELLEELGAEVEI-------LPTDG-- 46

Query: 80  KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
              PV+     +  AK T+L Y H DVQPAE  + W ++PF LT +  KLY RGA+DDKG
Sbjct: 47  --HPVVYAEFDSGAAK-TLLFYNHYDVQPAEPLEEWQSDPFALTERGGKLYARGAADDKG 103

Query: 140 PVLGWLHAIEAFQQTKKNVPVNIK 163
            ++  L A+ A+      +PVNIK
Sbjct: 104 ELMARLAALRAYLAEHGKLPVNIK 127

Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 430

>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]

 Score =  112 bits (282), Expect = 2e-29
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + E      +  +E LKE V I SVS+  +            A+ L++LG  VE  +
Sbjct: 1   LDRLLEVSLDLLDDILELLKELVRIPSVSAGEEAE-----AAELLAEWLEELGFEVEEDE 55

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +G    P        P ++  LG      T+L+ GHLDV PA   + W T+PF  T+KD 
Sbjct: 56  VG----PGPGR----PNLVARLGGGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDG 107

Query: 128 KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           KLYGRGA+D KG +   L+A+ A +     +P +++ +
Sbjct: 108 KLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLL 145

Length = 409

>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional

 Score =  108 bits (272), Expect = 1e-27
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG-ATVEIC 66
           + ++  Y+   +   +E LKE + I S+S+  +H+        + A  L++ G   VEI 
Sbjct: 2   MQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIM 61

Query: 67  DIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKD 126
           +               P++  +  +   K TVL+YGH DVQP +  + W T PF  T++D
Sbjct: 62  ETAGH-----------PIVYADWLHAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRD 110

Query: 127 EKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
            KLY RGASDDKG V   L A+EA  + +  +PVN+K
Sbjct: 111 GKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVK 147

Length = 456

>gnl|CDD|236127 PRK07907, PRK07907, hypothetical protein; Provisional

 Score =   99 bits (250), Expect = 1e-24
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 10  EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDI 68
           ++   V     +   +L+E V I SV++    R +      + AD L++ G   V +   
Sbjct: 8   DLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSA 67

Query: 69  GNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEK 128
                        P VI        A  TVL+Y H DVQP    D W++ PF LT +D +
Sbjct: 68  DGA----------PAVIGTRPAPPGAP-TVLLYAHHDVQPPGDPDAWDSPPFELTERDGR 116

Query: 129 LYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           LYGRGA+DDKG +   L A+ A      ++PV + 
Sbjct: 117 LYGRGAADDKGGIAMHLAALRALG---GDLPVGVT 148

Length = 449

>gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase

 Score = 99.2 bits (248), Expect = 3e-24
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 158 VPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
           + +  +E TGKNV+LLP+GA+DDGAHSQNEKI+  NYIEGTKLLAAY +E++K+
Sbjct: 413 ITLTFQEATGKNVMLLPIGAADDGAHSQNEKINRSNYIEGTKLLAAYFHELAKL 466

Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466

>gnl|CDD|193552 cd05677, M20_dipept_like_DUG2_type, M20 Defective in Utilization of Glutathione-type peptidases containing WD repeats

 Score = 93.9 bits (234), Expect = 2e-22
 Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 16/144 (11%)

Query: 23  IENLKEAVAIESVSS-SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKY 81
           +  L + VA ++VSS    +         +     K+LGAT          LP+G +   
Sbjct: 2   LNTLSKFVAFKTVSSDPTTNAEDCRRGATFLRQLFKKLGATNC------LLLPSGGT--- 52

Query: 82  PPVIL----GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
            P++L    GN    K K  +L YGH DV PA + DGW+T+PF LT ++  LYGRG SD+
Sbjct: 53  NPIVLATFSGNSSGKKRK-RILFYGHYDVVPAGETDGWDTDPFTLTGENGYLYGRGVSDN 111

Query: 138 KGPVLGWLHAI-EAFQQTKKNVPV 160
           KGP+L  ++A+ E FQ+ + +  V
Sbjct: 112 KGPILAAIYAVAELFQRGELDNDV 135

Peptidase M20 family, Defective in Utilization of Glutathione (DUG2) subfamily. DUG2-type proteins are metallopeptidases containing WD repeats at the N-terminus. DUG2 proteins are involved in the alternative pathway of glutathione (GSH) degradation. GSH, the major low-molecular-weight thiol compound in most eukaryotic cells, is normally degraded through the gamma-glutamyl cycle initiated by gamma-glutamyl transpeptidase. However, a novel pathway for the degradation of GSH has been characterized; it requires the participation of three genes identified in Saccharomyces cerevisiae as "defective in utilization of glutathione" genes including DUG1, DUG2, and DUG3. DUG1 encodes a probable di- or tri-peptidase identified as M20 metallopeptidase, DUG2 gene encodes a protein with a metallopeptidase domain and a large N-terminal WD40 repeat region, while DUG3 encodes a protein with a glutamine amidotransferase domain. Although dipeptides and tripeptides with a normal peptide bond, such as cys-gly or glu-cys-gly, can be hydrolyzed by the DUG1 protein, the presence of an unusual peptide bond, like in GSH, requires the participation of the DUG2 and DUG3 proteins as well. These three proteins form a GSH degradosomal complex. Length = 434

>gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 28/157 (17%)

Query: 13  EYVESNKNKFIENLKEAVAIESVSS-SVQHRP---QTINMIHYFADKLKQLGATVEICD- 67
           E VE  K++ +E+L+E V I SV   + +  P        +    +  ++LG   +  D 
Sbjct: 1   EEVEKYKDELLEDLQELVRIPSVRDEATEGAPFGPGPAKALDKMLELAERLGFKTKNVDN 60

Query: 68  -IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKD 126
             G      GE                    + + GHLDV PA   +GW T+PF  T+KD
Sbjct: 61  YAGYIEYGEGE------------------EYLGILGHLDVVPAG--EGWTTDPFEPTIKD 100

Query: 127 EKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
            KLYGRG SDDKGP +  L+A++A +     +P+  +
Sbjct: 101 GKLYGRGTSDDKGPAIAALYALKALKD--LGLPLKKR 135

Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453

>gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 38/164 (23%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINM-IHYFADKLKQLGATVEICDIGNQTLPNGESIKY 81
           +   +E ++I + ++     P  I     +     ++ G T        Q LP G     
Sbjct: 2   LPEFRELLSIPNDATD----PADIQKNADWLEKAFEKRGFTT-------QRLPTGG---- 46

Query: 82  PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE-------------- 127
            P++L       A+ T+L Y H D QP +        PF   LK++              
Sbjct: 47  LPLLLAERPTAGARKTILFYAHFDGQPVDPSKWDQKSPFTPVLKEKDADGNWTLPNWDLL 106

Query: 128 --------KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
                   +++ R ASDDKGP++ +L A++A +       VNIK
Sbjct: 107 KQEIDPEWRIFARSASDDKGPIIMFLAALDALKAAGIPPAVNIK 150

Peptidase M20 family, unknown dipeptidase-like subfamily 1 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 466

>gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional

 Score = 84.0 bits (208), Expect = 7e-19
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 18/146 (12%)

Query: 19  KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGES 78
            ++ +  L E +   S+S++ +   +T N   Y  D +++LG    I           E 
Sbjct: 1   MDEELYTLIEFLKKPSISATGEGIEETAN---YLKDTMEKLGIKANI-----------ER 46

Query: 79  IKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDK 138
            K  PV+ G + N  AK T+L+Y H DVQP +    W  +PF  T+++ ++Y RGASD+K
Sbjct: 47  TKGHPVVYGEI-NVGAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNK 105

Query: 139 GPVLGWLHAI-EAFQQTKKNVPVNIK 163
           G ++  L AI     + K  + VN+K
Sbjct: 106 GTLMARLFAIKHLIDKHK--LNVNVK 129

Length = 436

>gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           +E LK+ ++I SV+    +     N I    D L++ G + ++ +I      +       
Sbjct: 1   VELLKDLISIPSVNPPGGNEETIANYI---KDLLREFGFSTDVIEI-----TDDRLKVLG 52

Query: 83  PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVL 142
            V++   GN   K +++  GH DV PA   + W T+PF    KD KLYGRGA+D KG ++
Sbjct: 53  KVVVKEPGNGNEK-SLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLV 111

Query: 143 GWLHAIEAFQQTKKNVPVNI 162
             L+A++A ++       NI
Sbjct: 112 ALLYALKAIREAGIKPNGNI 131

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 375

>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVI 85
           L++ VAI SV+           +  Y A+ L+ LG  VE+ D      PN         +
Sbjct: 3   LQDLVAIPSVNP----PGGEAEVADYLAELLEDLGIPVEV-DEVAPGRPN---------L 48

Query: 86  LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWL 145
           +  +G  +   T+L+ GHLD  P   ++ W  +PF   ++D +LYGRGA D KG +   L
Sbjct: 49  VATIGGGRGP-TLLLNGHLDTVPVG-DEDWTYDPFEGEIEDGRLYGRGACDMKGGLAAML 106

Query: 146 HAIEAFQQTKKNVPVNI 162
            A+    +    +P  +
Sbjct: 107 AALAELAEAGVPLPGRV 123

Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both, ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline. Length = 365

>gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 20/139 (14%)

Query: 25  NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV 84
            LKE + I SV+                A +L++LG  VE+               +   
Sbjct: 1   LLKELIRIPSVTGEEAEFAD------RIARELEELGIDVEV-------------DAHIGN 41

Query: 85  ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
           ++   G    K  VL+  H+DV PA     W     V TLKD +LYGRGA+DDKG V   
Sbjct: 42  LIVEYG-GGEKPPVLLMAHIDVVPAGDTWWWEFPFAVDTLKDGRLYGRGAADDKGSVAAL 100

Query: 145 LHAIEAFQQTKKNVPVNIK 163
           L A+   ++        I 
Sbjct: 101 LEALRDLKENGFKPKGTII 119

Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237

>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 99  LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNV 158
           L+ GH+DV P   E GW   PF  T++D K+YGRG  D KG +L  L A+ A +     +
Sbjct: 1   LLRGHMDVVPIG-ETGWTHPPFSWTIEDGKMYGRGHDDMKGGLLAALEALRALKA-GGKL 58

Query: 159 PVNIK 163
              IK
Sbjct: 59  KGTIK 63

This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 310

>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVI 85
           LK+ + I +V+   ++      +  +  D L++LG + EI ++ N+ +   +     P +
Sbjct: 12  LKDLIKIPTVNPPGEN---YEEIAEFLRDTLEELGFSTEIIEVPNEYVK--KHDGPRPNL 66

Query: 86  LGNLGNDKAKHTVLVYGHLDVQPAEKEDGW-NTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
           +   G+    H     GH DV P    +GW    PF   +KD K+YGRGASD KG +   
Sbjct: 67  IARRGSGN-PHLHFN-GHYDVVPPG--EGWSVNVPFEPKVKDGKVYGRGASDMKGGIAAL 122

Query: 145 LHAIEAFQQTKK 156
           L A E       
Sbjct: 123 LAAFERLDPAGD 134

Length = 394

>gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 19/150 (12%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           ++++ E +E  K++ +E LK  V  E+ +   ++   T     + A+ L++LG +V+  D
Sbjct: 1   VSQLLEQIELRKDELLELLKTLVRFETPAPPARN---TNEAQEFIAEFLRKLGFSVDKWD 57

Query: 68  IGNQTLPNGESIKYP--PVILGNL-GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLT 123
           +            YP  P ++G   G +   +  L+  GH+DV     ++ W T PF  T
Sbjct: 58  V------------YPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPT 105

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
           +KD  LYGRGA+D KG + G L AI+   +
Sbjct: 106 IKDGWLYGRGAADMKGGLAGALFAIQLLHE 135

Length = 421

>gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 8   LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICD 67
           L  + +++++N +  +E L   + I S+S+   +         +    L  LG    + D
Sbjct: 5   LDPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRD 64

Query: 68  IGNQTLPNGESIKYPPVILG--NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLK 125
                          P+++         A H VL YGH DVQP +  D W + PF   +K
Sbjct: 65  TPGH-----------PMVVAHHEGPTGDAPH-VLFYGHYDVQPVDPLDLWESPPFEPRIK 112

Query: 126 D-----EKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           +     + +  RGASDDKG ++ ++ A  A++    ++PV +
Sbjct: 113 ETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRV 154

Length = 464

>gnl|CDD|193554 cd05679, M20_dipept_like_2, Uncharacterized M20 Dipeptidases

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 27/163 (16%)

Query: 21  KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADK----LKQLGATVEICDIGNQTLPNG 76
           +F E+L   VA  + S +   RP    ++ Y  D+    L++LG T EI D      P  
Sbjct: 5   RFREDLARRVAYPTESQNPARRP---ELLRYLTDEIQPALEKLGFTCEIVD-----NPVA 56

Query: 77  ESIKYPPVILGNLGNDKAKHTVLVYGHLDV---QPAEKEDGWNTEPFVLTLKDEKLYGRG 133
                 P ++     D A  TVL YGH DV   Q     DG   +P+ LT + ++ YGRG
Sbjct: 57  GG---GPFLIAERIEDPALPTVLTYGHGDVVRGQEGRWRDG--LDPWTLTEEGDRWYGRG 111

Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMG 176
            +D+KG  L  L A+EA  + +  +  N+K        L+ MG
Sbjct: 112 TADNKGQHLINLAALEAVLEARGKLGFNVK-------FLIEMG 147

Peptidase M20 family, unknown dipeptidase-like subfamily 2 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 447

>gnl|CDD|193515 cd03895, M20_ArgE_DapE_like2, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 71.8 bits (177), Expect = 9e-15
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV- 84
           L+E V I SV    +   Q      Y A++L+ LG  V+  +I    L +     + PV 
Sbjct: 3   LQELVRIPSVRGE-EAPAQ-----DYLAERLEALGLDVDRWEIDVDALRSHPG--FSPVE 54

Query: 85  --------ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASD 136
                   ++G L       ++++ GH+DV PA   D W  +PF   ++D  LYGRGA D
Sbjct: 55  VDYEGRPNVVGTLKGGGGGRSLILNGHIDVVPAGDLDLWTRDPFSPVIEDGWLYGRGAGD 114

Query: 137 DKGPVLGWLHAIEAFQ 152
            KG +   L A+EA +
Sbjct: 115 MKGGLAAALFAVEALR 130

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 399

>gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase

 Score = 71.8 bits (177), Expect = 9e-15
 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVI 85
           L+  VA  +VS         + +I Y AD L  LG  VE         P+ E  K    +
Sbjct: 3   LERLVAFPTVSRQ-----SNLALIDYVADYLAALGFRVER-------TPDPEGGKAN--L 48

Query: 86  LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWL 145
              +G       VL  GH DV P +    W+++PF LT +D +LYGRG  D KG +   L
Sbjct: 49  FATIGPGGDGGLVLS-GHTDVVPVD-GQRWSSDPFTLTERDGRLYGRGTCDMKGFLACAL 106

Query: 146 HAIEAFQQTKKNVPVNI 162
            A           P+++
Sbjct: 107 AAAPELAAADLKRPLHL 123

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372

>gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 18/116 (15%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI--KYPP 83
           L+E + I++ +              Y A +LK+ G  +EI +      P   ++  + P 
Sbjct: 4   LQELIRIDTTNPP----GNETRAAEYLAARLKEAGIDIEILESA----PGRANLVARLP- 54

Query: 84  VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
                 G D +   +L+ GHLDV PA+ ED W+ +PF   +KD  +YGRGA D KG
Sbjct: 55  ------GTDPSAPPLLLLGHLDVVPADPED-WSVDPFSGEIKDGYVYGRGAVDMKG 103

Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 426

>gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 11  ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN 70
           I +Y+ES++ + ++ LK  +  +SVS         +       +KL++LG  ++I +   
Sbjct: 8   ICDYIESHEEEAVKLLKRLIQEKSVSGDESGAQAIV------IEKLRELGLDLDIWEPSF 61

Query: 71  QTL-------PNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           + L           S    P I+  L       ++++ GH+DV P    + W+  P+   
Sbjct: 62  KKLKDHPYFVSPRTSFSDSPNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGE 121

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
           +   ++YGRG +D KG  +  L A+EA  +
Sbjct: 122 VIGGRIYGRGTTDMKGGNVALLLAMEALIE 151

Length = 422

>gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 29/145 (20%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           +E  +E +   SV+      P         A++LK LG T E  D G         +K  
Sbjct: 1   LELAQELIRRPSVT------PDDAGCQDLLAERLKALGFTCERLDFGG--------VK-- 44

Query: 83  PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                NL    G        L + GH DV P   E+GW++ PF  T+KD  LYGRGA+D 
Sbjct: 45  -----NLWARRGF---GGPHLCFAGHTDVVPPGDEEGWSSPPFSPTIKDGMLYGRGAADM 96

Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNI 162
           KG +  +L A E F     +   +I
Sbjct: 97  KGGIAAFLAAAERFVAEYPDHKGSI 121

Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366

>gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 30/162 (18%)

Query: 10  EISEYVESNKNKFIENLKEAVAIESVSSSVQHR------PQTINMIHYFADKLKQLGATV 63
           +  + VE  K+  IE+L+E + I SV    + +      P  +  +  F +  ++ G   
Sbjct: 4   DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKT 63

Query: 64  EICD--IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV 121
           +  D   G+     GE +         LG         + GHLDV PA   DGW+T+P+ 
Sbjct: 64  KNVDNYAGHIEYGEGEEV---------LG---------ILGHLDVVPAG--DGWDTDPYE 103

Query: 122 LTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             +KD K+Y RG SDDKGP +   +A++  ++    +P++ K
Sbjct: 104 PVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL--GLPLSKK 143

Length = 466

>gnl|CDD|235965 PRK07205, PRK07205, hypothetical protein; Provisional

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 16  ESNKNKFIENLKEAVAIESVSSSVQHRP---QTINMIHYFADKLKQLGATVEIC-DIGNQ 71
           E  ++  +  +K  V+  SV +  ++     Q I            L AT+++C  +G +
Sbjct: 7   EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQ---------DVLEATLDLCQGLGFK 57

Query: 72  TLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYG 131
           T         P    G     + +  + +  HLDV P      W T PF    KD  L+G
Sbjct: 58  TY------LDPKGYYGYAEIGQGEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFG 111

Query: 132 RGASDDKGPVLGWLHAIEA 150
           RG  DDKGP +  L+A++A
Sbjct: 112 RGTQDDKGPSMAALYAVKA 130

Length = 444

>gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 67.0 bits (165), Expect = 4e-13
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 29/134 (21%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           +E  ++ +   SV+      P         A++L+ LG T E  D G+            
Sbjct: 5   LELAQDLIRRPSVT------PDDAGCQDLLAERLEALGFTCERMDFGDVK---------- 48

Query: 83  PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                NL    G +      L + GH DV P    + W + PF  T++D  LYGRGA+D 
Sbjct: 49  -----NLWARRGTE---GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADM 100

Query: 138 KGPVLGWLHAIEAF 151
           KG +  ++ A E F
Sbjct: 101 KGSLAAFVVAAERF 114

Length = 375

>gnl|CDD|235928 PRK07079, PRK07079, hypothetical protein; Provisional

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 20/143 (13%)

Query: 3   SSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADK----LKQ 58
           +    +A  + Y +S    F  +L   VA  + S +    P    +  Y  D+    L  
Sbjct: 2   TREAAIARAAAYFDSGA--FFADLARRVAYRTESQNPDRAPA---LRAYLTDEIAPALAA 56

Query: 59  LGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNT- 117
           LG T  I D     +  G      P ++     D A  TVL+YGH DV     ++ W   
Sbjct: 57  LGFTCRIVD---NPVAGG-----GPFLIAERIEDDALPTVLIYGHGDVVRGY-DEQWREG 107

Query: 118 -EPFVLTLKDEKLYGRGASDDKG 139
             P+ LT + ++ YGRG +D+KG
Sbjct: 108 LSPWTLTEEGDRWYGRGTADNKG 130

Length = 469

>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 21/150 (14%)

Query: 26  LKEAVAIESVSSSVQHRPQTIN---MIHYFADKLKQLGATVEICDI----GNQTLPNGES 78
           L E + I +V+      P   N      Y  ++L++LG  VEI ++     ++  P    
Sbjct: 4   LSELIRIPTVN------PPGENYEECAEYLKERLEELGFEVEIIEVPDEYLDKYYP--RH 55

Query: 79  IKYPPVILGNLG-NDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
              P  I+  +    +    +   GH DV P    DGW+ +PF   +KD ++YGRGASD 
Sbjct: 56  PGNPRFIV--VARLGEGPPRLHFNGHYDVVPPG--DGWSVDPFKPVVKDGRIYGRGASDM 111

Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNIKEVTG 167
           KG +   + A+EA  +        + E   
Sbjct: 112 KGGIAAAIAALEALAEAGVPPNGPV-EAAF 140

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390

>gnl|CDD|233618 TIGR01887, dipeptidaselike, dipeptidase, putative

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 16/134 (11%)

Query: 19  KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQ-LGATVEIC-DIGNQTLPNG 76
           K++ +E+LKE +AI+SV    + +         F +  ++ L   +EI    G  T    
Sbjct: 1   KDEILEDLKELIAIDSVEDLEKAKEGAP-----FGEGPRKALDKFLEIAKRDGFTT---- 51

Query: 77  ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASD 136
              +      G +   + +  + + GHLDV PA   DGW + PF  T+KD ++YGRG  D
Sbjct: 52  ---ENVDNYAGYIEYGQGEEVLGILGHLDVVPAG--DGWTSPPFEPTIKDGRIYGRGTLD 106

Query: 137 DKGPVLGWLHAIEA 150
           DKGP +   +A++ 
Sbjct: 107 DKGPTIAAYYAMKI 120

This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. Length = 447

>gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE)

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 24  ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP 83
           E L + VA +S S     RP  +++I +    L+ LG +VE+     Q  P+G   K   
Sbjct: 1   EILTKLVAFDSTSF----RPN-VDLIDWAQAYLEALGFSVEV-----QPFPDGAE-KSN- 48

Query: 84  VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLG 143
            ++  +G   A    L  GH DV P + +  W  +PF LT KD +LYGRG  D KG +  
Sbjct: 49  -LVAVIGPSGAGGLALS-GHTDVVPYD-DAAWTRDPFRLTEKDGRLYGRGTCDMKGFLAC 105

Query: 144 WLHAIEAFQQTKKNVPVNI 162
            L A       +   P+++
Sbjct: 106 ALAAAPDLAAEQLKKPLHL 124

This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes [Amino acid biosynthesis, Glutamate family]. Length = 364

>gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 28/146 (19%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKY- 81
           ++ L+  VA ++VS     R   + +I +  D L   G   E+       +P+ E  K  
Sbjct: 7   LDILERLVAFDTVS-----RDSNLALIEWVRDYLAAHGVESEL-------IPDPEGDKAN 54

Query: 82  -----PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASD 136
                 P   G          +++ GH DV P +    W ++PF LT +D +LYGRG  D
Sbjct: 55  LFATIGPADRGG---------IVLSGHTDVVPVD-GQAWTSDPFRLTERDGRLYGRGTCD 104

Query: 137 DKGPVLGWLHAIEAFQQTKKNVPVNI 162
            KG +   L A+          P+++
Sbjct: 105 MKGFIAAALAAVPELAAAPLRRPLHL 130

Length = 385

>gnl|CDD|236285 PRK08554, PRK08554, peptidase; Reviewed

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 83  PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVL 142
             + G +G  K K  +L   H DV P   E+ WNTEPF LT+K +K YGRG++DDKG V 
Sbjct: 53  YAVYGEIGEGKPK--LLFMAHFDVVPVNPEE-WNTEPFKLTVKGDKAYGRGSADDKGNVA 109

Query: 143 GWLHAIEAFQQTKKN 157
             + A++   +   N
Sbjct: 110 SVMLALKELSKEPLN 124

Length = 438

>gnl|CDD|183836 PRK13004, PRK13004, peptidase; Reviewed

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 23/144 (15%)

Query: 9   AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICD 67
             I    E  K      L++ + I S S   +       ++    ++++++G   VEI  
Sbjct: 4   KLILMLAEKYKADMTRFLRDLIRIPSESGDEK------RVVKRIKEEMEKVGFDKVEIDP 57

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +GN              +LG +G+   K  +    H+D         W+ +PF     D 
Sbjct: 58  MGN--------------VLGYIGH--GKKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDG 101

Query: 128 KLYGRGASDDKGPVLGWLHAIEAF 151
           ++YGRG SD KG +   ++A +  
Sbjct: 102 RIYGRGTSDQKGGMASMVYAAKII 125

Length = 399

>gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 22/118 (18%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG-ATVEICDIGNQTLPNGESIKY 81
           +  L++ + I S+S          ++     +++++LG   V I   GN           
Sbjct: 1   VRFLRDLIRIPSLSGEEG------DVAELIKEEMEKLGFDEVFIDGYGN----------- 43

Query: 82  PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
              ++G +G  K K  +L   H+D  P    + W  +PF   ++D ++YGRG SD KG
Sbjct: 44  ---VIGRIGGGKPK-IILFDAHIDTVPVGDREQWRFDPFGGEIEDGRIYGRGTSDMKG 97

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 376

>gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 28/126 (22%)

Query: 21  KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG---ATVEICDIGNQTLPNGE 77
              +  KE + I + +S       T       A +LK  G   A +E+     +      
Sbjct: 38  AARDLYKELIEINTTAS----TGSTTPAAEAMAARLKAAGFADADIEVTGPYPRK----- 88

Query: 78  SIKYPPVILGNL-----GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGR 132
                    GNL     G D  K  +L+  H+DV  A++ED W  +PF L  ++   YGR
Sbjct: 89  ---------GNLVARLRGTDPKK-PILLLAHMDVVEAKRED-WTRDPFKLVEENGYFYGR 137

Query: 133 GASDDK 138
           G SDDK
Sbjct: 138 GTSDDK 143

Length = 472

>gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP 159
           + GH+DV PA   +GW  +PF   + + ++Y RGASDDKGP L   +A++  ++      
Sbjct: 83  IIGHMDVVPAG--EGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPS 140

Query: 160 VNIKEVTGKN 169
             I+ V G N
Sbjct: 141 KKIRFVVGTN 150

This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme , has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 466

>gnl|CDD|193557 cd05682, M20_dipept_like_5, Uncharacterized M20 Dipeptidases

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 60  GATVEICDIGNQTLPNGESIKYPPVILGNL-GNDKAKHTVLVYGHLDVQPAEKEDGWN-- 116
           GA VE+  +  +T          P++   + G D+   TVL+YGHLD QP     GW+  
Sbjct: 47  GAKVEVVRLEGRT----------PLLFVEIPGTDQGDGTVLLYGHLDKQPPF--TGWDEG 94

Query: 117 ---TEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
               +P +   +  +LYGRG +DD   +   L AI+A Q+
Sbjct: 95  LGPWKPVI---RGGRLYGRGGADDGYAIFASLTAIKALQE 131

Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 451

>gnl|CDD|235710 PRK06133, PRK06133, glutamate carboxypeptidase; Reviewed

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 2   ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA 61
           A++A   AE+    +  +  +++ LKE V+IES S   +   Q   ++   A++LK LGA
Sbjct: 19  AAAAAPDAELLAAAQQEQPAYLDTLKELVSIESGSGDAEGLKQVAALL---AERLKALGA 75

Query: 62  TVEICDIGNQTLPNGESIKYPPVILGNL-GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPF 120
            VE         P   S     +++    G  K +  +++  H+D            +PF
Sbjct: 76  KVE-------RAPTPPSAG--DMVVATFKGTGKRR--IMLIAHMDT--VYLPGMLAKQPF 122

Query: 121 VLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
              +  ++ YG G +DDKG V   LHA++  QQ
Sbjct: 123 --RIDGDRAYGPGIADDKGGVAVILHALKILQQ 153

Length = 410

>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 24  ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEIC---DIGNQTLPNGESIK 80
           E  KE ++  SV+      P         A++L++LG  +E     D  N     G    
Sbjct: 3   ELAKELISRPSVT------PNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT--- 53

Query: 81  YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGP 140
                                GH DV PA  E+ W++ PF    +D KLYGRGA+D KG 
Sbjct: 54  ------------GEPVLAFA-GHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGS 100

Query: 141 VLGWLHAIEAF 151
           +  ++ A E F
Sbjct: 101 LAAFIVAAERF 111

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum , and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason [Amino acid biosynthesis, Aspartate family]. Length = 370

>gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 22/137 (16%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHY-FADKLKQL------GATVEICDIGNQTLPN 75
            E L  AV I +VS              Y F D L++          +E+  +    L  
Sbjct: 1   AERLSGAVRIPTVSYDDMVDEDEDWDPFYKFHDYLEKTYPLVHKALKLEV--VNTYGL-- 56

Query: 76  GESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEK--EDGWNTEPFVLTLKDEKLYGRG 133
                +        G+D +   +L+  H DV P     ED W   PF   + D  ++GRG
Sbjct: 57  --LYTWE-------GSDPSLKPILLMAHQDVVPVNPGTEDEWTHPPFSGHIDDGYIWGRG 107

Query: 134 ASDDKGPVLGWLHAIEA 150
           A DDK  ++  L A+EA
Sbjct: 108 ALDDKNSLIAILEAVEA 124

Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group mostly contains proteins that have been uncharacterized to date, but also includes vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 441

>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 51  YFADKLKQLG-ATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA 109
           Y    L++LG   VE  D  +  +P+G      P I+  +       T+ +  H+DV P 
Sbjct: 31  YLEKLLRELGFDDVERYDAPDPRVPDG----VRPNIVARIPGADTSRTLWIISHMDVVPP 86

Query: 110 EKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                W T+PF   +K +K+YGRG  D+
Sbjct: 87  GDLSLWKTDPFKPVVKGDKIYGRGVEDN 114

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 393

>gnl|CDD|235720 PRK06156, PRK06156, hypothetical protein; Provisional

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTIN-MIHYFADKLKQL----GATVEICDIGNQTLPNGE 77
           IE+L+E VA  +V   V+  PQ  N     F   LK L    G      ++ N+ L    
Sbjct: 49  IESLRELVAFPTVR--VEGVPQHENPEFIGFKKLLKSLARDFGLDYR--NVDNRVLE--- 101

Query: 78  SIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKE----DGWNTEPFVLTLKDEKLYGRG 133
                 + LG  G+DK    V +  H DV PA  E    DG   +PF +TL  ++LYGRG
Sbjct: 102 ------IGLGGSGSDK----VGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRG 151

Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVN 161
             DDKG ++  L+A++A +     +P+ 
Sbjct: 152 TEDDKGAIVTALYAMKAIKD--SGLPLA 177

Length = 520

>gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 21/144 (14%)

Query: 22  FIENLKEAVAIESVSSSVQHRPQTIN-MIHYFADKLKQLGATVEICDIGNQTLPNGESIK 80
            +  L+E V IES S    +  + ++ +    A++L+ LG  VE        +P  +  +
Sbjct: 1   MLALLEELVNIESGS----YDKEGVDRVAELLAEELEALGFEVER-------IPGPD--E 47

Query: 81  YPPVILGNLGNDKAKHTVLVYGHLD-VQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           +   ++           +L+ GHLD V P   +      PF   +  ++ YG G +D KG
Sbjct: 48  FGDHLVATFKGGGGPRILLL-GHLDTVFP---KGTLAFRPF--RVDGDRAYGPGVADMKG 101

Query: 140 PVLGWLHAIEAFQQTKKNVPVNIK 163
            ++  L+A++A +       + I 
Sbjct: 102 GIVVALYALKALKALGLLDDLPIT 125

Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363

>gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 51  YFADKLKQLG-ATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA 109
           Y    LK+ G   VE  D  +  +  G      P I+  +     K T+ +  H+DV P 
Sbjct: 35  YLESLLKEYGFDEVERYDAPDPRVIEG----VRPNIVAKIPGGDGKRTLWIISHMDVVPP 90

Query: 110 EKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                W T+PF   +KD K+YGRG+ D+
Sbjct: 91  GDLSLWETDPFKPVVKDGKIYGRGSEDN 118

Length = 400

>gnl|CDD|235346 PRK05111, PRK05111, acetylornithine deacetylase; Provisional

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 12/119 (10%)

Query: 22  FIENLKEAVAIESVSSSVQHRPQT-INMIHYFADKLKQLGATVEICDIGNQTLPNGESIK 80
           FIE  +  +A  S+S++     Q+   +I   A   + LG  VEI     Q +P     K
Sbjct: 7   FIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEI-----QPVPGTRG-K 60

Query: 81  YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           +   +L +LG    +  +L+ GH D  P + E  W  +PF LT  D KLYG G +D KG
Sbjct: 61  FN--LLASLG--SGEGGLLLAGHTDTVPFD-EGRWTRDPFTLTEHDGKLYGLGTADMKG 114

Length = 383

>gnl|CDD|236208 PRK08262, PRK08262, hypothetical protein; Provisional

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 90  GNDKAKHTVLVYGHLDVQPAEK--EDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHA 147
           G+D +   +++  H DV P     E  W   PF   + D  ++GRGA DDKG ++  L A
Sbjct: 106 GSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEA 165

Query: 148 IEA 150
            EA
Sbjct: 166 AEA 168

Length = 486

>gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 1   MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG 60
           M  + +    I   V++  +  +   ++ V       S +          + A   ++ G
Sbjct: 1   MMLTPDLTQRILAAVDAGFDAQVAFTQDLVRF----PSTRGAEAPCQ--DFLARAFRERG 54

Query: 61  ATV---EICDIGNQTLPNGESI-----KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKE 112
             V    I     ++ P    +       P V+       K   ++++ GH+DV P    
Sbjct: 55  YEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPL 114

Query: 113 DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
           D W+  PF   + D  +YGRGA+D K  +   L A++A + 
Sbjct: 115 DLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA 155

Length = 427

>gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 23/105 (21%)

Query: 51  YFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLD-VQP 108
           Y A++L++LG   V I + GN              ++G         ++L+  HLD V P
Sbjct: 23  YVAERLRELGLEDVYIDERGN--------------VIGRRKGSGGGPSLLLSAHLDTVFP 68

Query: 109 AEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153
                        +  +  +LYG G  DD   +   L A  A + 
Sbjct: 69  EG-------TDVTVRREGGRLYGPGIGDDTAGLAALLAAARALRA 106

Peptidase M20 family, Poly(aspartic acid) hydrolase (PAA hydrolase)-like subfamily. PAA hydrolase enzymes are involved in alpha,beta-poly(D,L-aspartic acid) (tPAA) biodegradation. PAA is being extensively studied as a replacement for commercial polycarboxylate components since it can be degraded by enzymes from isolated tPAA degrading bacteria. Thus far, two types of PAA degrading bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2) have been investigated in detail; the former can completely degrade tPAA of low-molecular weights below 5000, while the latter can degrade high molecular weight tPAA to release oligo(aspartic acid) (OAA) as a product, suggesting two kinds of PAA degrading enzymes. It has been shown that PAA hydrolase-1 from Sphingomonas sp. KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to produce OAA, and it is suggested that PAA hydrolase-2 hydrolyzes OAA to aspartic acid. Length = 359

>gnl|CDD|237268 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT 154
            H DV       GW  +PF   +KD ++YGRGA D KG +   + A EAF   
Sbjct: 91  SHHDVVEVG--HGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAV 141

Length = 427

>gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           GH+DV  A   D W  +PF LT KD KLYGRGA+D K 
Sbjct: 66  GHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKS 103

Length = 377

>gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 90  GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           G D ++  +LV+GHLDV PAE  D W+  PF   ++D  ++GRGA D K 
Sbjct: 60  GADPSRPALLVHGHLDVVPAEAAD-WSVHPFSGEIRDGYVWGRGAVDMKD 108

Length = 426

>gnl|CDD|193530 cd05653, M20_ArgE_LysK, M20 Peptidase acetylornithine deacetylase/acetyl-lysine deacetylase

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 31/115 (26%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVI 85
           L+  ++I S S           +  + A+ +K+LG    I + GN     G         
Sbjct: 7   LERLLSIPSPSGEEA------ELAEFLAEIMKELGFEAWIDEAGNVVAVKGSGGP----- 55

Query: 86  LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGP 140
                      TVL+ GH+D  P               ++   LYGRGA D KGP
Sbjct: 56  -----------TVLLLGHIDTVPGF----IPVR-----IEGGVLYGRGAVDAKGP 90

Peptidase M20 family, acetylornithine deacetylase (ArgE)/acetyl-lysine deacetylase (LysK) subfamily. Proteins in this subfamily are mainly archaeal with related bacterial species and are deacetylases with specificity for both N-acetyl-ornithine and N-acetyl-lysine found within a lysine biosynthesis operon. ArgE catalyzes the conversion of N-acetylornithine to ornithine, while LysK, a homolog of ArgE, has deacetylating activities for both N-acetyllysine and N-acetylornithine at almost equal efficiency. These results suggest that LysK which may share an ancestor with ArgE functions not only for lysine biosynthesis, but also for arginine biosynthesis in species such as Thermus thermophilus. The substrate specificity of ArgE is quite broad in that several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 341

>gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 92  DKAKHTVLVYGHLD-VQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHA--- 147
           D+ K T+L+  H D V+P     GW  +PF    +  KLYG G++D    ++  L     
Sbjct: 53  DEGKPTILLNSHHDTVKPNA---GWTRDPFEPVEEGGKLYGLGSNDAGASLVSLLATFLH 109

Query: 148 IEAFQQTKKNVPVNI---KEVTGKNVL--LLP 174
           + +    K N+       +E++GKN L  LLP
Sbjct: 110 LYSEGPLKYNLIFAASAEEEISGKNGLESLLP 141

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 342

>gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 77  ESIKYPP----VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGR 132
           E + YP     +I+   G  + K    V  H+DV PA  E  W  +PF L++  +KLYGR
Sbjct: 56  EHVAYPEGRGNLIVEYPGTGEGKILSFVGSHMDVVPANPE-AWEFDPFSLSIDGDKLYGR 114

Query: 133 GASDDKGPV 141
           G +D  G V
Sbjct: 115 GTTDCLGHV 123

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423

>gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 30/113 (26%)

Query: 98  VLVYGHLDVQPAEK--EDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTK 155
           ++   H  +Q A +  E+ +   P             G S    P++G            
Sbjct: 353 LVPPDHPALQAARRALEEAFGKPPV--------FIREGGS---IPIVGLF---------- 391

Query: 156 KNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEI 208
                  K + G   +LL  G  DD  H+ NEK  + N+ +G + +A  L  +
Sbjct: 392 -------KRILGAPTVLLGFGLPDDNIHAPNEKFRLDNFHKGIRAIARLLERL 437

Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437

>gnl|CDD|132565 TIGR03526, selenium_YgeY, putative selenium metabolism hydrolase

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 23/140 (16%)

Query: 9   AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG-ATVEICD 67
            +I    E  +   I  L++ VAI S S         I        ++++LG   VEI  
Sbjct: 2   NQIKSEAEKYRGDMIRFLRDLVAIPSESGDEGRVALRI------KQEMEKLGFDKVEIDP 55

Query: 68  IGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE 127
           +GN              +LG +G+      + +  H+D       D W  +P+     +E
Sbjct: 56  MGN--------------VLGYIGH--GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEE 99

Query: 128 KLYGRGASDDKGPVLGWLHA 147
            +YGRGASD +G +   ++A
Sbjct: 100 IIYGRGASDQEGGIASMVYA 119

SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling , starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types. Length = 395

>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 27/138 (19%)

Query: 26  LKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVI 85
            +  V I S++ +         +  + AD L+ LG TVE   +  +   N         +
Sbjct: 5   HRSLVEIPSITGNEAA------VGDFLADYLESLGYTVEKQPVEGKDRFN---------V 49

Query: 86  LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV-LTLKDEKLYGRGASDDKGPVLGW 144
               G+ +    VL+  H+D  P          PF+  ++  + +YGRG+ D KG V   
Sbjct: 50  YAYPGSKRQPR-VLLTSHIDTVP----------PFIPYSIDGDFIYGRGSVDAKGSVAAQ 98

Query: 145 LHAIEAFQQTKKNVPVNI 162
           + A E      +    ++
Sbjct: 99  IIAAEELLAEGEIGEGDV 116

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal, and have been inferred by homology as being related to both ArgE and DapE. Length = 335

>gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 15/87 (17%)

Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVNI-------------KEVTGKNVLLLPMGASDD 180
            +D  GP      A  A        PV I             +   G  +LL  +   D 
Sbjct: 344 RADTDGPAYQA--ARAALATAWGVEPVLIGSGGSIPLISDLQEAFPGAEILLTGVEDPDS 401

Query: 181 GAHSQNEKIDVRNYIEGTKLLAAYLYE 207
            AHS NE + +  + +     A +L  
Sbjct: 402 NAHSPNESLHLGEFRKAILAEALFLAR 428

Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428

>gnl|CDD|233615 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 15/118 (12%)

Query: 38  SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIK-YPPVILGNLGNDKAKH 96
           +VQ  P     + +   +  +LG       +  +T+   E +   P V+L   G++    
Sbjct: 23  TVQPNPDYAACVDFLIKQADELG-------LARKTI---EFVPGKPVVVLTWPGSNPELP 72

Query: 97  TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE--KLYGRGASDDKGPVLGWLHAIEAFQ 152
           ++L+  H DV P  +E  W   PF    KDE   +Y RGA D K   + +L A+   +
Sbjct: 73  SILLNSHTDVVPVFREH-WTHPPFS-AFKDEDGNIYARGAQDMKCVGVQYLEAVRNLK 128

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400

>gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 82  PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEK--LYGRGASDDKG 139
           P V+L   G+D    ++L+  H DV P  +E  W  +PF    KDE   +Y RGA D K 
Sbjct: 51  PIVVLTWEGSDPELPSILLNSHTDVVPVFEEK-WTHDPF-SAHKDEDGNIYARGAQDMKC 108

Query: 140 PVLGWLHAIEAFQQT 154
             + +L AI   + +
Sbjct: 109 VGIQYLEAIRRLKAS 123

Peptidase M20 family, Aminoacylase-I like (AcyI-like; Acylase I; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. Acylase I is involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate) and is considered as a potential target of antimicrobial agents. Porcine AcyI is also shown to deacetylate certain quorum-sensing N-acylhomoserine lactones, while the rat enzyme has been implicated in degradation of chemotactic peptides of commensal bacteria. Prokaryotic arginine synthesis usually involves the transfer of an acetyl group to glutamate by ornithine acetyltransferase in order to form ornithine. However, Escherichia coli acetylornithine deacetylase (acetylornithinase, ArgE) (EC 3.5.1.16) catalyzes the deacylation of N2-acetyl-L-ornithine to yield ornithine and acetate. Phylogenetic evidence suggests that the clustering of the arg genes in one continuous sequence pattern arose in an ancestor common to Enterobacteriaceae and Vibrionaceae, where ornithine acetyltransferase was lost and replaced by a deacylase. Length = 391

>gnl|CDD|181544 PRK08737, PRK08737, acetylornithine deacetylase; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 21/119 (17%)

Query: 35  VSSSVQHRPQTIN---MIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN 91
           VS   ++ P+ I    +  Y   +L   G  VE+ D G   + +  +++  P  L N+  
Sbjct: 16  VSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAV-SLYAVRGTPKYLFNV-- 70

Query: 92  DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEA 150
                      HLD  P      W+ +P V+   D+++ G G  D KG     L A  A
Sbjct: 71  -----------HLDTVPDS--PHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA 116

Length = 364

>gnl|CDD|130957 TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-acetyl-lysine deacetylase

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 31/137 (22%)

Query: 24  ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP 83
           E LK+ + I S S          N   +  +  K LG  + I D GN  L  G+      
Sbjct: 1   ELLKDLLEIYSPSGKEA------NAAKFLEEISKDLGLKLIIDDAGNFILGKGDG---HK 51

Query: 84  VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLG 143
            IL       A H   V G++ V+                ++   LYGRGA D KGP++ 
Sbjct: 52  KIL------LAGHVDTVPGYIPVK----------------IEGGLLYGRGAVDAKGPLIA 89

Query: 144 WLHAIEAFQQTKKNVPV 160
            + A     +    V V
Sbjct: 90  MIFATWLLNEKGIKVIV 106

This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. Length = 336

>gnl|CDD|233628 TIGR01900, dapE-gram_pos, succinyl-diaminopimelate desuccinylase

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 96  HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTK 155
             V++ GHLD  P               +   +LYGRGA D KG +   L       +T+
Sbjct: 58  SRVILAGHLDTVPIADN-------LPSRVDGGRLYGRGAVDMKGGLAVMLALAATLDRTE 110

Query: 156 KNVPV 160
               +
Sbjct: 111 PRHDL 115

This model represents a clade of succinyl-diaminopimelate desuccinylases from actinobacteria (high-GC gram positives), delta-proteobacteria and aquificales and is based on the characterization of the enzyme from Corynebacterium glutamicum. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546. Other sequences included in the seed of this model were assessed to confirm that 1) the related genes DapC (succinyl-diaminopimelate transaminase) and DapD (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase) are also found in the genome, 2) each is found only once in those genomes, 3) the lysine biosynthesis pathway is complete and 4) the direct (TIGR03540 or TIGR03542) or acetylated (GenProp0787) aminotransferase pathways are absent in thes genomes. Additionally, a number of the seed members are observed adjacent to either DapC or DapD (often as a divergon with a putative promoter site between them [Amino acid biosynthesis, Aspartate family]. Length = 351

>gnl|CDD|235299 PRK04443, PRK04443, acetyl-lysine deacetylase; Provisional

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 31/118 (26%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
            E LK  V I S S       +      +  + ++  G    + + GN   P G+    P
Sbjct: 9   RELLKGLVEIPSPS------GEEAAAAEFLVEFMESHGREAWVDEAGNARGPAGDG---P 59

Query: 83  PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGP 140
           P              VL+ GH+D  P +           + ++D  L+GRG+ D KGP
Sbjct: 60  P-------------LVLLLGHIDTVPGD---------IPVRVEDGVLWGRGSVDAKGP 95

Length = 348

>gnl|CDD|193525 cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 34/139 (24%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL---PNGESI 79
            E  +  V I SVS                       G   E+ D     L   P+ E  
Sbjct: 2   AELTRALVDIPSVS-----------------------GNEKELADAVEAALRALPHLEVR 38

Query: 80  KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           +    ++      +    VL  GHLD  P       N       ++ ++LYGRGASD KG
Sbjct: 39  RDGNSVVARTNLGRPPRVVLA-GHLDTVPVAD----NFPS---RIEGDRLYGRGASDMKG 90

Query: 140 PVLGWLHAIEAFQQTKKNV 158
            +   L       + +   
Sbjct: 91  GLAVMLALAATLPEPELAA 109

Peptidase M20 family, actinobacterial dapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) subfamily. This group is composed of predominantly actinobacterial DapE proteins. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from proteobacteria such as Escherichia coli and Haemophilus influenzae, while genes that encode for DapEs have been sequenced from several bacterial sources such as the actinobacteria Corynebacterium glutamicum and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme (41.6 kDa per subunit) that requires 2 atoms of zinc per molecule of polypeptide for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 345

>gnl|CDD|193561 cd08013, M20_ArgE_DapE_like3, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 83  PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
           P ++G L       ++++ GH+D        G+  +P    + D +LYGRGA D KG
Sbjct: 55  PSVVGVLRGTGGGRSLMLNGHIDTVSL---GGYEGDPLSGRIADGRLYGRGAYDMKG 108

Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal and bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PRK08201	456	hypothetical protein; Provisional	100.0
PRK06915	422	acetylornithine deacetylase; Validated	100.0
PRK06837	427	acetylornithine deacetylase; Provisional	99.98
PRK09104	464	hypothetical protein; Validated	99.97
PRK07907	449	hypothetical protein; Provisional	99.97
PRK08596	421	acetylornithine deacetylase; Validated	99.97
PRK13013	427	succinyl-diaminopimelate desuccinylase; Reviewed	99.97
PRK07338	402	hypothetical protein; Provisional	99.97
KOG2276|consensus	473		99.97
PRK06446	436	hypothetical protein; Provisional	99.97
PRK13004	399	peptidase; Reviewed	99.97
PRK07473	376	carboxypeptidase; Provisional	99.96
PRK13983	400	diaminopimelate aminotransferase; Provisional	99.96
TIGR03320	395	ygeY M20/DapE family protein YgeY. Members of this	99.96
PRK08588	377	succinyl-diaminopimelate desuccinylase; Reviewed	99.96
PRK07205	444	hypothetical protein; Provisional	99.96
TIGR03526	395	selenium_YgeY putative selenium metabolism hydrola	99.96
PRK06133	410	glutamate carboxypeptidase; Reviewed	99.96
PRK13009	375	succinyl-diaminopimelate desuccinylase; Reviewed	99.96
PRK07318	466	dipeptidase PepV; Reviewed	99.96
TIGR01246	370	dapE_proteo succinyl-diaminopimelate desuccinylase	99.96
TIGR01886	466	dipeptidase dipeptidase PepV. This model represent	99.96
PRK07079	469	hypothetical protein; Provisional	99.95
PRK07906	426	hypothetical protein; Provisional	99.95
PRK09133	472	hypothetical protein; Provisional	99.95
TIGR01910	375	DapE-ArgE acetylornithine deacetylase or succinyl-	99.95
COG0624	409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	99.95
TIGR01892	364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	99.95
TIGR01880	400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	99.95
PRK05111	383	acetylornithine deacetylase; Provisional	99.95
PRK07522	385	acetylornithine deacetylase; Provisional	99.95
PRK08651	394	succinyl-diaminopimelate desuccinylase; Reviewed	99.94
PRK08262	486	hypothetical protein; Provisional	99.93
PRK08737	364	acetylornithine deacetylase; Provisional	99.93
TIGR01900	373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	99.93
PRK15026	485	aminoacyl-histidine dipeptidase; Provisional	99.93
PRK04443	348	acetyl-lysine deacetylase; Provisional	99.92
PRK08554	438	peptidase; Reviewed	99.92
PRK06156	520	hypothetical protein; Provisional	99.92
TIGR01893	477	aa-his-dipept aminoacyl-histidine dipeptidase.	99.92
PRK13381	404	peptidase T; Provisional	99.91
TIGR01887	447	dipeptidaselike dipeptidase, putative. This model	99.91
PRK08652	347	acetylornithine deacetylase; Provisional	99.91
PRK05469	408	peptidase T; Provisional	99.91
PRK13007	352	succinyl-diaminopimelate desuccinylase; Reviewed	99.9
TIGR01883	361	PepT-like peptidase T-like protein. This model rep	99.9
PRK00466	346	acetyl-lysine deacetylase; Validated	99.9
KOG2275|consensus	420		99.89
TIGR01891	363	amidohydrolases amidohydrolase. This model represe	99.88
TIGR01882	410	peptidase-T peptidase T. This model represents a t	99.87
TIGR01902	336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	99.86
PLN02693	437	IAA-amino acid hydrolase	99.85
PLN02280	478	IAA-amino acid hydrolase	99.83
PRK12891	414	allantoate amidohydrolase; Reviewed	99.79
TIGR03176	406	AllC allantoate amidohydrolase. This enzyme cataly	99.78
PRK12892	412	allantoate amidohydrolase; Reviewed	99.78
PRK09290	413	allantoate amidohydrolase; Reviewed	99.78
PRK12893	412	allantoate amidohydrolase; Reviewed	99.77
PRK12890	414	allantoate amidohydrolase; Reviewed	99.77
PRK13590	591	putative bifunctional OHCU decarboxylase/allantoat	99.75
PRK13799	591	unknown domain/N-carbamoyl-L-amino acid hydrolase	99.75
PF01546	189	Peptidase_M20: Peptidase family M20/M25/M40 This f	99.66
TIGR01879	401	hydantase amidase, hydantoinase/carbamoylase famil	99.64
COG4187	553	RocB Arginine degradation protein (predicted deacy	99.56
TIGR03106	343	trio_M42_hydro hydrolase, peptidase M42 family. Th	99.53
PRK10199	346	alkaline phosphatase isozyme conversion aminopepti	99.51
COG1473	392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	99.33
COG1363	355	FrvX Cellulase M and related proteins [Carbohydrat	99.14
TIGR03107	350	glu_aminopep glutamyl aminopeptidase. This model r	98.99
PRK09864	356	putative peptidase; Provisional	98.92
PRK09961	344	exoaminopeptidase; Provisional	98.79
COG2195	414	PepD Di- and tripeptidases [Amino acid transport a	98.64
KOG2194|consensus	834		98.58
PF04389	179	Peptidase_M28: Peptidase family M28; InterPro: IPR	98.03
KOG3946|consensus	338		96.97
PF05343	292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	96.64
COG2234	435	Iap Predicted aminopeptidases [General function pr	96.12
KOG2526|consensus	555		94.93
KOG2276|consensus	473		94.6
KOG2195|consensus	702		93.77
PF05450	234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	89.76
COG4882	486	Predicted aminopeptidase, Iap family [General func	86.96
PRK09961	344	exoaminopeptidase; Provisional	83.92
PRK00913	483	multifunctional aminopeptidase A; Provisional	81.09
PTZ00412	569	leucyl aminopeptidase; Provisional	80.17

>PRK08201 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=241.65  Aligned_cols=191  Identities=33%  Similarity=0.522  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEE
Q psy17305          7 YLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVI   85 (223)
Q Consensus         7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl   85 (223)
                      |++++.++++++.++++++|++||+|||+|+.....+++.++++||.++|+++|++ ++++..+      +     .+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~------~-----~~~l   69 (456)
T PRK08201          1 MMQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETA------G-----HPIV   69 (456)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecC------C-----CCEE
Confidence            35688899999999999999999999999864322335788999999999999996 5565543      2     1699


Q ss_pred             EEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         86 LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        86 ~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      ++++.+.+++|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++++|+++|++.+..++++|.++
T Consensus        70 ~a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~  149 (456)
T PRK08201         70 YADWLHAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFC  149 (456)
T ss_pred             EEEecCCCCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            99874444568999999999999986678999999999999999999999999999999999999988776677777654


Q ss_pred             c------cc-----------------ceeeccCccc----------------------CCCC--cCCCCccceecccchh
Q psy17305        166 T------GK-----------------NVLLLPMGAS----------------------DDGA--HSQNEKIDVRNYIEGT  198 (223)
Q Consensus       166 ~------g~-----------------~~~~~~~g~~----------------------~~~a--hag~~~~~g~~ai~g~  198 (223)
                      +      |+                 .+++.+++..                      ..++  |++..+..+.||+.  
T Consensus       150 ~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~--  227 (456)
T PRK08201        150 IEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALH--  227 (456)
T ss_pred             EEcccccCCccHHHHHHhhHHhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHH--
Confidence            3      21                 1344443321                      1254  98877766789999  


Q ss_pred             hHHHHHHHHHHhh
Q psy17305        199 KLLAAYLYEISKV  211 (223)
Q Consensus       199 ~~~a~~~~~l~~l  211 (223)
                       .+++.+.+|..+
T Consensus       228 -~~~~~l~~l~~~  239 (456)
T PRK08201        228 -ALVQLLASLHDE  239 (456)
T ss_pred             -HHHHHHHhcCCC
Confidence             999999998764

>PRK06915 acetylornithine deacetylase; Validated

Probab=100.00  E-value=1.6e-31  Score=238.34  Aligned_cols=200  Identities=22%  Similarity=0.376  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC---C----CC
Q psy17305          4 SAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL---P----NG   76 (223)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~---~----~g   76 (223)
                      |+++++++.++++++.+++++++++|++|||+|+      .+..+++||+++|+++|++++++.......   +    ..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~   74 (422)
T PRK06915          1 MEQLKKQICDYIESHEEEAVKLLKRLIQEKSVSG------DESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPR   74 (422)
T ss_pred             CcHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcc
Confidence            4577889999999999999999999999999997      577899999999999999988765431000   0    00


Q ss_pred             CCCCCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305         77 ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK  156 (223)
Q Consensus        77 ~~~~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~  156 (223)
                      ...+..+||++++++..+.|+|+|+|||||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+.
T Consensus        75 ~~~~~~~nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~  154 (422)
T PRK06915         75 TSFSDSPNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI  154 (422)
T ss_pred             cccCCCceEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence            00001379999985433468999999999999987788999999999999999999999999999999999999999887


Q ss_pred             CCceeeEEec------cc--------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhh
Q psy17305        157 NVPVNIKEVT------GK--------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       157 ~~~~~i~~~~------g~--------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~  199 (223)
                      .++++|.+++      |+              .+++.++..                 .+.++|++ .|..|.||+.   
T Consensus       155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~s-~p~~g~nAi~---  230 (422)
T PRK06915        155 ELKGDVIFQSVIEEESGGAGTLAAILRGYKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHGG-TRYEGVSAIE---  230 (422)
T ss_pred             CCCCcEEEEEecccccCCcchHHHHhcCcCCCEEEECCCCCccceeecccEEEEEEEEEeeccccC-CCCcCcCHHH---
Confidence            7777776442      21              122222211                 02388988 6789999999   


Q ss_pred             HHHHHHHHHHhhhh
Q psy17305        200 LLAAYLYEISKVTQ  213 (223)
Q Consensus       200 ~~a~~~~~l~~l~~  213 (223)
                      .+++++..|..+.+
T Consensus       231 ~~~~~~~~l~~l~~  244 (422)
T PRK06915        231 KSMFVIDHLRKLEE  244 (422)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988865

>PRK06837 acetylornithine deacetylase; Provisional

Probab=99.98  E-value=5.5e-31  Score=235.42  Aligned_cols=199  Identities=20%  Similarity=0.301  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC---C-C---CC
Q psy17305          5 AEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL---P-N---GE   77 (223)
Q Consensus         5 ~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~---~-~---g~   77 (223)
                      .++++++.++++.+.++++++|++|++|||+|+      .+.++++||+++|+++|+++++...+....   + .   ..
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~l~~li~ipS~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~   78 (427)
T PRK06837          5 PDLTQRILAAVDAGFDAQVAFTQDLVRFPSTRG------AEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEI   78 (427)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC------cHHHHHHHHHHHHHHCCCceEEecCCHHHhhhccccccccc
Confidence            347888999999999999999999999999997      467899999999999999988765431000   0 0   00


Q ss_pred             CCCCCcEEEEEcCC-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305         78 SIKYPPVILGNLGN-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK  156 (223)
Q Consensus        78 ~~~~~~nl~a~~~~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~  156 (223)
                      ..+..+||++.+++ .+..|+|+|+|||||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+.
T Consensus        79 ~~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~  158 (427)
T PRK06837         79 DYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGL  158 (427)
T ss_pred             ccCCCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence            00113799999854 33468999999999999987788999999999999999999999999999999999999999887


Q ss_pred             CCceeeEEec-------cc-------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhh
Q psy17305        157 NVPVNIKEVT-------GK-------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       157 ~~~~~i~~~~-------g~-------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~  199 (223)
                      .++++|.+++       |+             .+++.++..                 .+.++|++ .|..|+||+.   
T Consensus       159 ~~~~~i~~~~~~dEE~~g~g~~~~~~~~~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~---  234 (427)
T PRK06837        159 APAARVHFQSVIEEESTGNGALSTLQRGYRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHVR-EAGTGANAID---  234 (427)
T ss_pred             CCCCcEEEEEEeccccCCHhHHHHHhcCcCCCEEEEcCCCCCccccccceeEEEEEEEEeeccccC-CcccCcCHHH---
Confidence            7777775433       11             122333221                 12388998 6799999999   


Q ss_pred             HHHHHHHHHHhhhh
Q psy17305        200 LLAAYLYEISKVTQ  213 (223)
Q Consensus       200 ~~a~~~~~l~~l~~  213 (223)
                      .+++.+..|..+.+
T Consensus       235 ~~~~~i~~l~~~~~  248 (427)
T PRK06837        235 AAYHLIQALRELEA  248 (427)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887764

>PRK09104 hypothetical protein; Validated

Probab=99.97  E-value=1.8e-30  Score=234.41  Aligned_cols=190  Identities=25%  Similarity=0.398  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG   87 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a   87 (223)
                      +.++.++++.+.++++++|++||+|||+|+++...+++.++++||.++|+++|++++..+..      +     .+||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~------~-----~~~l~a   73 (464)
T PRK09104          5 LDPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP------G-----HPMVVA   73 (464)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC------C-----CCEEEE
Confidence            45688999999999999999999999999865433457889999999999999999877643      2     169999


Q ss_pred             EcCC-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCC-----eEEecCCCCCchhHHHHHHHHHHHHHccCCCcee
Q psy17305         88 NLGN-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE-----KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN  161 (223)
Q Consensus        88 ~~~~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~-----~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~  161 (223)
                      ++++ ++..|+|+|+||+||||+++.+.|+++||.+.++++     +|||||++|||+|++++|+|+++|++.+..++++
T Consensus        74 ~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~  153 (464)
T PRK09104         74 HHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVR  153 (464)
T ss_pred             EecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCc
Confidence            9853 345789999999999999877789999999988764     6999999999999999999999999987677777


Q ss_pred             eEEec------cc-----------------ceeeccCccc----------------------C--CCCcCCCCccceecc
Q psy17305        162 IKEVT------GK-----------------NVLLLPMGAS----------------------D--DGAHSQNEKIDVRNY  194 (223)
Q Consensus       162 i~~~~------g~-----------------~~~~~~~g~~----------------------~--~~ahag~~~~~g~~a  194 (223)
                      |.+++      |+                 .+++.+++..                      .  .++|++..+..|.||
T Consensus       154 i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~na  233 (464)
T PRK09104        154 VTILFEGEEESGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANP  233 (464)
T ss_pred             EEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCH
Confidence            76543      21                 1334453321                      1  257998888899999


Q ss_pred             cchhhHHHHHHHHHHhh
Q psy17305        195 IEGTKLLAAYLYEISKV  211 (223)
Q Consensus       195 i~g~~~~a~~~~~l~~l  211 (223)
                      +.   .+++.+..|..+
T Consensus       234 i~---~~~~~l~~l~~~  247 (464)
T PRK09104        234 IR---VLTRILAGLHDE  247 (464)
T ss_pred             HH---HHHHHHHhccCC
Confidence            99   999999988653

>PRK07907 hypothetical protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=233.47  Aligned_cols=187  Identities=28%  Similarity=0.465  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLPNGESIKYPPVIL   86 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~~g~~~~~~~nl~   86 (223)
                      ++++.++++++.++++++|++||+|||+|+......+++++++||.++|+++|+ ++++++.+      +     .+|++
T Consensus         6 ~~~~~~~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~------~-----~~nl~   74 (449)
T PRK07907          6 ADDLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSAD------G-----APAVI   74 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecC------C-----CCEEE
Confidence            457889999999999999999999999997532223578999999999999998 77776521      2     26999


Q ss_pred             EEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         87 GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        87 a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +++++.+.+|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++|+|+++|   +..++++|.+++
T Consensus        75 a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~  151 (449)
T PRK07907         75 GTRPAPPGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFV  151 (449)
T ss_pred             EEecCCCCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEE
Confidence            99854444689999999999999877789999999999999999999999999999999999999   334566665433


Q ss_pred             ------cc-----------------ceeeccCccc------------------------CCCCcCCCCccceecccchhh
Q psy17305        167 ------GK-----------------NVLLLPMGAS------------------------DDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       167 ------g~-----------------~~~~~~~g~~------------------------~~~ahag~~~~~g~~ai~g~~  199 (223)
                            |+                 .+++++++..                        ..++|++..+..+.||+.   
T Consensus       152 ~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~---  228 (449)
T PRK07907        152 EGEEEMGSPSLERLLAEHPDLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALT---  228 (449)
T ss_pred             EcCcccCCccHHHHHHhchHhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHH---
Confidence                  21                 1344444321                        236798875566889999   


Q ss_pred             HHHHHHHHHHhh
Q psy17305        200 LLAAYLYEISKV  211 (223)
Q Consensus       200 ~~a~~~~~l~~l  211 (223)
                      .+++.+..|..+
T Consensus       229 ~~~~~l~~l~~~  240 (449)
T PRK07907        229 ALVRLLATLHDE  240 (449)
T ss_pred             HHHHHHHhhCCC
Confidence            999999888764

>PRK08596 acetylornithine deacetylase; Validated

Probab=99.97  E-value=5.1e-30  Score=228.83  Aligned_cols=186  Identities=25%  Similarity=0.429  Sum_probs=150.7

Q ss_pred             HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305         10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL   89 (223)
Q Consensus        10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~   89 (223)
                      ++.++++.+.++++++|++|++|||+|+...   ++.++++||+++|+++|+++++++...     +     .+|+++++
T Consensus         3 ~~~~~i~~~~~~~~~~l~~Lv~i~S~s~~~~---~e~~~a~~l~~~l~~~G~~~~~~~~~~-----~-----~~nvia~~   69 (421)
T PRK08596          3 QLLEQIELRKDELLELLKTLVRFETPAPPAR---NTNEAQEFIAEFLRKLGFSVDKWDVYP-----N-----DPNVVGVK   69 (421)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCCCCch---hHHHHHHHHHHHHHHCCCeEEEEEccC-----C-----CceEEEEe
Confidence            4677888888999999999999999986432   578899999999999999998877532     2     26999998


Q ss_pred             CC-CC-CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305         90 GN-DK-AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT-  166 (223)
Q Consensus        90 ~~-~~-~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~-  166 (223)
                      ++ ++ ..|+|+|+|||||||+++.+.|+.+||.+.++||+|||||++|||+|++++++|+++|++.+..++.+|.+++ 
T Consensus        70 ~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~  149 (421)
T PRK08596         70 KGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSV  149 (421)
T ss_pred             cCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence            43 22 2368999999999999877789999999999999999999999999999999999999999888888876543 


Q ss_pred             -----cc--------------ceeeccCccc------C--------------------CCCcCCCCccceecccchhhHH
Q psy17305        167 -----GK--------------NVLLLPMGAS------D--------------------DGAHSQNEKIDVRNYIEGTKLL  201 (223)
Q Consensus       167 -----g~--------------~~~~~~~g~~------~--------------------~~ahag~~~~~g~~ai~g~~~~  201 (223)
                           |+              .+++++++..      .                    ..+|++ .|..|.||+.   .+
T Consensus       150 ~dEE~g~~G~~~~~~~~~~~d~~i~~ep~~~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~-~p~~G~nai~---~~  225 (421)
T PRK08596        150 IGEEVGEAGTLQCCERGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAG-GGLFGASAIE---KM  225 (421)
T ss_pred             eccccCCcCHHHHHhcCCCCCEEEECCCCCCccccccceeeEEEEEEeeccccccccccccccc-CCccCcCHHH---HH
Confidence                 21              1445554221      0                    025777 5889999999   99


Q ss_pred             HHHHHHHHhhh
Q psy17305        202 AAYLYEISKVT  212 (223)
Q Consensus       202 a~~~~~l~~l~  212 (223)
                      ++.+..|..+.
T Consensus       226 ~~~i~~l~~~~  236 (421)
T PRK08596        226 MKIIQSLQELE  236 (421)
T ss_pred             HHHHHHHHHHH
Confidence            99999988774

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.97  E-value=7.7e-30  Score=227.75  Aligned_cols=191  Identities=20%  Similarity=0.264  Sum_probs=146.7

Q ss_pred             HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305         10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL   89 (223)
Q Consensus        10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~   89 (223)
                      ++.++++++.++++++|++|++|||.+....   ++.++++||.++|+++|++++.++.........  ...+.|+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~Lv~i~S~~~~g~---~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~--~~~~~nlia~~   78 (427)
T PRK13013          4 RLFAAIEARRDDLVALTQDLIRIPTLNPPGR---AYREICEFLAARLAPRGFEVELIRAEGAPGDSE--TYPRWNLVARR   78 (427)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCCCcCCCCc---cHHHHHHHHHHHHHHCCCceEEEecCCCCcccc--cCCcceEEEEe
Confidence            5777888888999999999999999874322   467899999999999999988775421000000  00025999998


Q ss_pred             CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305         90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT---  166 (223)
Q Consensus        90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~---  166 (223)
                      ++..+.|+|+|+||+||||++  +.|+.+||.+.++||+|||||++|||+|++++|+|+++|++.+..++++|.+++   
T Consensus        79 ~g~~~~~~i~l~gH~DvVp~~--~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~d  156 (427)
T PRK13013         79 QGARDGDCVHFNSHHDVVEVG--HGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTAD  156 (427)
T ss_pred             cCCCCCCEEEEEeccccCCCC--CCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEec
Confidence            543345799999999999987  569999999999999999999999999999999999999998877777776543   


Q ss_pred             ---cc-------------------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHH
Q psy17305        167 ---GK-------------------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLY  206 (223)
Q Consensus       167 ---g~-------------------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~  206 (223)
                         |+                   .+++.++...                  +.++|++ .|+.|+||+.   .+++.+.
T Consensus       157 EE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~---~~~~~l~  232 (427)
T PRK13013        157 EESGGFGGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAHGS-MPFLGDSAIR---HMGAVLA  232 (427)
T ss_pred             cccCChhHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccccC-CCCcCcCHHH---HHHHHHH
Confidence               21                   0122222110                  1388977 7999999999   9999999


Q ss_pred             HHHhh
Q psy17305        207 EISKV  211 (223)
Q Consensus       207 ~l~~l  211 (223)
                      +|..+
T Consensus       233 ~l~~~  237 (427)
T PRK13013        233 EIEER  237 (427)
T ss_pred             HHHHH
Confidence            88654

>PRK07338 hypothetical protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=228.66  Aligned_cols=195  Identities=21%  Similarity=0.276  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC--CCCCC--CCC
Q psy17305          6 EYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL--PNGES--IKY   81 (223)
Q Consensus         6 ~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~--~~g~~--~~~   81 (223)
                      .+..++.++++++.+++++.|++|++|||+|.++.   ++.++++||.++|+++|++++.++......  .+++.  ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~---~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~   79 (402)
T PRK07338          3 SEERAVLDLIDDRQAPMLEQLIAWAAINSGSRNLD---GLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAH   79 (402)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCHH---HHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCc
Confidence            45667889999999999999999999999987543   578899999999999999988766432100  00110  001


Q ss_pred             CcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCcee--eeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCc
Q psy17305         82 PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT--LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP  159 (223)
Q Consensus        82 ~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~--~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~  159 (223)
                      .+||+++++++. .++|+|+|||||||++      .+||.+.  ++||+|||||++|||+|++++|+|+++|++.+..++
T Consensus        80 ~~nl~a~~~~~~-~~~lll~gH~DvVp~~------~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~  152 (402)
T PRK07338         80 GPALHVSVRPEA-PRQVLLTGHMDTVFPA------DHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADK  152 (402)
T ss_pred             CCeEEEEECCCC-CccEEEEeecCccCCC------CCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCC
Confidence            269999985432 3579999999999986      3799875  899999999999999999999999999998887766


Q ss_pred             eeeEEec------cc---------------ceeeccCccc-------------------CCCCcCCCCccceecccchhh
Q psy17305        160 VNIKEVT------GK---------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       160 ~~i~~~~------g~---------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~  199 (223)
                      .++.+++      |+               .+++++++..                   ..++|++..|..|+||+.   
T Consensus       153 ~~i~~~~~~dEE~g~~g~~~~~~~~~~~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~---  229 (402)
T PRK07338        153 LGYDVLINPDEEIGSPASAPLLAELARGKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIV---  229 (402)
T ss_pred             CCEEEEEECCcccCChhhHHHHHHHhccCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHH---
Confidence            6665432      21               1456665421                   138999999999999999   


Q ss_pred             HHHHHHHHHHhhhh
Q psy17305        200 LLAAYLYEISKVTQ  213 (223)
Q Consensus       200 ~~a~~~~~l~~l~~  213 (223)
                      .+++++..|..+.+
T Consensus       230 ~~~~~i~~l~~l~~  243 (402)
T PRK07338        230 AAAELALALHALNG  243 (402)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999887754

>KOG2276|consensus

Probab=99.97  E-value=9.1e-30  Score=217.37  Aligned_cols=159  Identities=53%  Similarity=0.912  Sum_probs=150.8

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG   87 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a   87 (223)
                      ..++.++++.+.++++..|+++|+|+|+|.++..+....++++|+++.|+++|..++..+.+.+..++|..+|.|+.+.+
T Consensus         4 l~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~   83 (473)
T KOG2276|consen    4 LTKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLG   83 (473)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhh
Confidence            56789999999999999999999999999999888889999999999999999999999998877778888999999999


Q ss_pred             EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      ++|+++++++++++||||++|+...++|..+||.++++||+|||||+.|+|+.+++++.|++++++.++.+|.||.+++
T Consensus        84 ~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~  162 (473)
T KOG2276|consen   84 VLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVF  162 (473)
T ss_pred             cccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEE
Confidence            9999999999999999999999988999999999999999999999999999999999999999999999999998654

>PRK06446 hypothetical protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=225.03  Aligned_cols=172  Identities=29%  Similarity=0.476  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++||+|||+|+..+   ++.++++||.++|+++|++++.++..      +     .+|++++++.+ .+|+|+
T Consensus         2 ~~~~~~l~eLV~i~S~s~~~~---~~~~~a~~l~~~l~~~G~~ve~~~~~------~-----~~~lia~~~~~-~~~~vl   66 (436)
T PRK06446          2 DEELYTLIEFLKKPSISATGE---GIEETANYLKDTMEKLGIKANIERTK------G-----HPVVYGEINVG-AKKTLL   66 (436)
T ss_pred             hhHHHHHHHHhCCCCCCCCcH---hHHHHHHHHHHHHHHCCCeEEEEecC------C-----CCEEEEEecCC-CCCEEE
Confidence            468899999999999997432   44789999999999999999887653      2     26999998643 368999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc-----
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK-----  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~-----  168 (223)
                      |+|||||||+++.+.|+.+||.+.++||+|||||++|||+|++++|+|++.|++.+ .++.++.+++      |+     
T Consensus        67 l~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~  145 (436)
T PRK06446         67 IYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLED  145 (436)
T ss_pred             EEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHH
Confidence            99999999998768899999999999999999999999999999999999998765 4566665432      21     


Q ss_pred             -----------ceeeccCccc-----------------------C--CCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 -----------NVLLLPMGAS-----------------------D--DGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 -----------~~~~~~~g~~-----------------------~--~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                 +++++|+...                       .  .++|++. |..|.||+.   .+++.+.+|..+
T Consensus       146 ~l~~~~~~~~~d~vi~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~-p~~g~NAi~---~~~~~l~~l~~~  220 (436)
T PRK06446        146 FIEKNKNKLKADSVIMEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSN-APIVRNPAW---DLVKLLSTLVDG  220 (436)
T ss_pred             HHHHHHHHhCCCEEEECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCC-CccCCCHHH---HHHHHHHhhCCC
Confidence                       1223333211                       1  3689985 668999999   999999998765

>PRK13004 peptidase; Reviewed

Probab=99.97  E-value=4.6e-29  Score=221.19  Aligned_cols=182  Identities=19%  Similarity=0.260  Sum_probs=149.5

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG   87 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a   87 (223)
                      .+++.++++++.++++++|++|++|||+|+      ++.+++++|.++|+++|+++...+..             .|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~lv~ips~s~------~e~~~a~~l~~~l~~~G~~~~~~~~~-------------~n~~a   63 (399)
T PRK13004          3 FKLILMLAEKYKADMTRFLRDLIRIPSESG------DEKRVVKRIKEEMEKVGFDKVEIDPM-------------GNVLG   63 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCcEEEEcCC-------------CeEEE
Confidence            577889999999999999999999999998      46789999999999999985443211             48999


Q ss_pred             EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305         88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT-  166 (223)
Q Consensus        88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~-  166 (223)
                      ++++.  .|+|+|+||+||||+++.+.|..+||.+.++||+|||||++|||+|++++|.|+++|++.+..++.+|.+++ 
T Consensus        64 ~~~~~--~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~  141 (399)
T PRK13004         64 YIGHG--KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGT  141 (399)
T ss_pred             EECCC--CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence            88653  389999999999999866789999999999999999999999999999999999999998877777776443 


Q ss_pred             ------cc---------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHH
Q psy17305        167 ------GK---------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEI  208 (223)
Q Consensus       167 ------g~---------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l  208 (223)
                            ++               .+++.++...                 +.++|++ .|..|+||+.   .+++.+..|
T Consensus       142 ~~EE~~~g~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha~-~p~~g~nAi~---~~~~~i~~l  217 (399)
T PRK13004        142 VQEEDCDGLCWRYIIEEDKIKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHGS-APERGDNAIY---KMAPILNEL  217 (399)
T ss_pred             cccccCcchhHHHHHHhcCCCCCEEEEccCCCCceEEecceEEEEEEEEeccccccC-CCCCCCCHHH---HHHHHHHHH
Confidence                  11               0222232211                 2388988 6899999999   999999999


Q ss_pred             Hhhhhh
Q psy17305        209 SKVTQA  214 (223)
Q Consensus       209 ~~l~~~  214 (223)
                      ..+.+.
T Consensus       218 ~~~~~~  223 (399)
T PRK13004        218 EELNPN  223 (399)
T ss_pred             Hhhccc
Confidence            887653

>PRK07473 carboxypeptidase; Provisional

Probab=99.96  E-value=6.1e-29  Score=218.94  Aligned_cols=176  Identities=22%  Similarity=0.276  Sum_probs=142.0

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCcc
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKH   96 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~   96 (223)
                      +.++++++|++||+|||+|+++.   +..++++|+.++|+++|++++.++...     +.    .+|+++++++ ++..|
T Consensus         9 ~~~~~~~~l~~Lv~i~S~s~~~~---~~~~~~~~l~~~l~~~G~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~   76 (376)
T PRK07473          9 DSEAMLAGLRPWVECESPTWDAA---AVNRMLDLAARDMAIMGATIERIPGRQ-----GF----GDCVRARFPHPRQGEP   76 (376)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHHHHcCCeEEEecCCC-----CC----CCeEEEEeCCCCCCCC
Confidence            35789999999999999998643   567889999999999999998765331     11    1589998853 33468


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--  168 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--  168 (223)
                      +|+|+|||||||+.  +.|..+||  .+++|+|||||++|||+|++++|+|+++|++.+..++.+|.+++      |+  
T Consensus        77 ~lll~gH~DtV~~~--~~~~~~p~--~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g  152 (376)
T PRK07473         77 GILIAGHMDTVHPV--GTLEKLPW--RREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPS  152 (376)
T ss_pred             eEEEEecCCCCCCC--CCccCCCe--EEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCcc
Confidence            99999999999774  35988999  58899999999999999999999999999998876666665433      22  


Q ss_pred             -------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        169 -------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       169 -------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                                   .+++++++..                   +.++|++..|..|+||+.   .+++++.+|..+.
T Consensus       153 ~~~~~~~~~~~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~---~~~~~i~~l~~~~  225 (376)
T PRK07473        153 TRDLIEAEAARNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIR---EMARQILAIDAMT  225 (376)
T ss_pred             HHHHHHHhhccCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHH---HHHHHHHHHHHhc
Confidence                         2566676532                   138999999999999999   9999999998875

>PRK13983 diaminopimelate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-28  Score=218.12  Aligned_cols=184  Identities=25%  Similarity=0.393  Sum_probs=141.5

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCcc
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKH   96 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~   96 (223)
                      ..++++++|++|++|||+|+... ..++.++++||.++|+++|++ ++++.........+    ..+|+++.+++..+.+
T Consensus         3 ~~~~~~~~l~~lv~i~s~s~~~~-~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~----~~~nl~~~~~g~~~~~   77 (400)
T PRK13983          3 LRDEMIELLSELIAIPAVNPDFG-GEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEG----VRPNIVAKIPGGDGKR   77 (400)
T ss_pred             hHHHHHHHHHHHhCcCCCCCCCC-CccHHHHHHHHHHHHHHcCCceEEEEecCCcccccC----CCccEEEEecCCCCCC
Confidence            34689999999999999986421 114778999999999999998 87765431100000    0269999985443457


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--  168 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--  168 (223)
                      +|+|+||+||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+..++++|.+++      |+  
T Consensus        78 ~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~  157 (400)
T PRK13983         78 TLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKY  157 (400)
T ss_pred             eEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcc
Confidence            9999999999999877789999999999999999999999999999999999999998888888876443      21  


Q ss_pred             --c---------------eeeccCccc--------------------CCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        169 --N---------------VLLLPMGAS--------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       169 --~---------------~~~~~~g~~--------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                        .               +++.+.+..                    ..++|++. |..|+||+.   .+++.+..|..
T Consensus       158 g~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~-p~~g~nAi~---~~~~~i~~l~~  232 (400)
T PRK13983        158 GIQYLLKKHPELFKKDDLILVPDAGNPDGSFIEIAEKSILWLKFTVKGKQCHAST-PENGINAHR---AAADFALELDE  232 (400)
T ss_pred             cHHHHHhhcccccCCCCEEEEecCCCCCCceeEEeecceEEEEEEEEeEccccCC-CCCCCCHHH---HHHHHHHHHHH
Confidence              0               112111111                    13889995 889999999   99999999876

>TIGR03320 ygeY M20/DapE family protein YgeY

Probab=99.96  E-value=1.1e-28  Score=218.34  Aligned_cols=179  Identities=20%  Similarity=0.262  Sum_probs=143.1

Q ss_pred             HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305         10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL   89 (223)
Q Consensus        10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~   89 (223)
                      ++.+++++..+++++++++|++|||+|+      .+.++++||.++|+++|+++.... .            ..|+++++
T Consensus         3 ~~~~~i~~~~~~~~~~~~~lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~-~------------~~n~~~~~   63 (395)
T TIGR03320         3 QIKSEAKKYRGDMIRFLRDLVAIPSESG------DEKRVAERIKEEMEKLGFDKVEID-P------------MGNVLGYI   63 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCC------chHHHHHHHHHHHHHhCCcEEEEC-C------------CCCEEEEe
Confidence            5677888888999999999999999997      467899999999999999743221 1            14889988


Q ss_pred             CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305         90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT---  166 (223)
Q Consensus        90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~---  166 (223)
                      +.  +.|+|+|+|||||||+++.+.|+++||.+.++||++||||++|||+|++++|.|+++|++.+..++.++.+++   
T Consensus        64 g~--~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~d  141 (395)
T TIGR03320        64 GH--GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQ  141 (395)
T ss_pred             CC--CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence            53  2478999999999999877789999999999999999999999999999999999999998876665554332   


Q ss_pred             ----cc---------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        167 ----GK---------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       167 ----g~---------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                          +.               .+++.+++.                 .+.++|++ .|..|.||+.   .++..+..|..
T Consensus       142 EE~~~g~~~~~~~~~~~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hss-~p~~g~nAi~---~~~~~l~~l~~  217 (395)
T TIGR03320       142 EEDCDGLCWQYIIEEDGIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIY---KMAPILKELSQ  217 (395)
T ss_pred             ccccCchHHHHHHHhcCCCCCEEEEcCCCccceEEecceEEEEEEEEeeeccccC-CCCCCCCHHH---HHHHHHHHHHH
Confidence                11               122233321                 02389988 5899999999   99999999887


Q ss_pred             hhh
Q psy17305        211 VTQ  213 (223)
Q Consensus       211 l~~  213 (223)
                      +.+
T Consensus       218 ~~~  220 (395)
T TIGR03320       218 LNA  220 (395)
T ss_pred             HHH
Confidence            754

Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.96  E-value=1e-28  Score=217.22  Aligned_cols=171  Identities=26%  Similarity=0.398  Sum_probs=140.3

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++|++|||+|+      .+..+++||.++|+++|++++.++.+.     +     ++|+++.++++  .|+|+
T Consensus         2 ~~~~~~l~~Lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~-----~-----~~~l~a~~g~~--~~~il   63 (377)
T PRK08588          2 EEKIQILADIVKINSVND------NEIEVANYLQDLFAKHGIESKIVKVND-----G-----RANLVAEIGSG--SPVLA   63 (377)
T ss_pred             hHHHHHHHHHhcCCCCCC------cHHHHHHHHHHHHHHCCCceEEEecCC-----C-----CceEEEEeCCC--CceEE
Confidence            568899999999999997      467899999999999999998876642     2     26999998543  48999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc-----------
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK-----------  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~-----------  168 (223)
                      |+|||||||+++.+.|+++||.+.++||+|||||++|||+|++++|.|+++|.+.+..++++|.+++..           
T Consensus        64 ~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~  143 (377)
T PRK08588         64 LSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQ  143 (377)
T ss_pred             EEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHH
Confidence            999999999987778999999999999999999999999999999999999999887777787655421           


Q ss_pred             -----------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        169 -----------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       169 -----------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                                 .+++.+++.                 .+.++|++ .|..|.||+.   .+++.+..+..+.
T Consensus       144 ~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hss-~p~~g~nAi~---~~~~~l~~l~~~~  211 (377)
T PRK08588        144 LTEKGYADDLDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHSS-MPELGVNAID---PLLEFYNEQKEYF  211 (377)
T ss_pred             HHhcCccCCCCEEEEecCCCceeEEEEEEEEEEEEEEEeechhcc-CCccccCHHH---HHHHHHHHHHHHh
Confidence                       022223211                 02389986 6899999999   8898888887764

>PRK07205 hypothetical protein; Provisional

Probab=99.96  E-value=7.2e-29  Score=222.79  Aligned_cols=135  Identities=24%  Similarity=0.362  Sum_probs=113.3

Q ss_pred             hcHHHHHHHHHHhhccCCCCCCCCC----chHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC
Q psy17305         17 SNKNKFIENLKEAVAIESVSSSVQH----RPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND   92 (223)
Q Consensus        17 ~~~~~~i~~l~~lv~i~s~s~~~~~----~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~   92 (223)
                      ++.++++++|++||+|||+|+....    ..+..++++|+.++|+++|++++.++.+             .+++++++. 
T Consensus         8 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-------------~~~~~~~g~-   73 (444)
T PRK07205          8 KVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKG-------------YYGYAEIGQ-   73 (444)
T ss_pred             HhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCC-------------eEEEEEecC-
Confidence            4568899999999999999875321    1245788999999999999998776432             366777653 


Q ss_pred             CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         93 KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        93 ~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                       +.|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++|.|+++|++.+.+++++|.+++
T Consensus        74 -~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~  146 (444)
T PRK07205         74 -GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIF  146 (444)
T ss_pred             -CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence             3579999999999999877889999999999999999999999999999999999999999887777776543

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase

Probab=99.96  E-value=2.6e-28  Score=216.16  Aligned_cols=179  Identities=21%  Similarity=0.251  Sum_probs=143.0

Q ss_pred             HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305         10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL   89 (223)
Q Consensus        10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~   89 (223)
                      ++.++++++.+++++++++|++|||+|+      .+.++++||.++|+++|+++......             .|+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~l~~Lv~ips~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~-------------~~v~~~~   63 (395)
T TIGR03526         3 QIKSEAEKYRGDMIRFLRDLVAIPSESG------DEGRVALRIKQEMEKLGFDKVEIDPM-------------GNVLGYI   63 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCceEEEcCC-------------CcEEEEe
Confidence            4677888888899999999999999997      46789999999999999974322111             4889988


Q ss_pred             CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305         90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT---  166 (223)
Q Consensus        90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~---  166 (223)
                      +.  +.++|+|+||+||||+++.+.|+++||.+.++||++||||++|||+|++++|.|++.|++.+..++.++.+++   
T Consensus        64 g~--~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~d  141 (395)
T TIGR03526        64 GH--GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQ  141 (395)
T ss_pred             CC--CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecc
Confidence            53  2478999999999999877789999999999999999999999999999999999999998866655554332   


Q ss_pred             ----cc---------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        167 ----GK---------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       167 ----g~---------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                          ++               .+++.++...                 +.++|++ .|..|.||+.   .+++.+..|..
T Consensus       142 EE~~~g~~~~~~~~~~~~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~  217 (395)
T TIGR03526       142 EEDCDGLCWQYIIEEDKIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIY---KMAPILKELSQ  217 (395)
T ss_pred             cccCCcHhHHHHHhccCCCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCccC-CCCCCCCHHH---HHHHHHHHHHH
Confidence                11               1222333210                 2389987 5899999999   99999999888


Q ss_pred             hhh
Q psy17305        211 VTQ  213 (223)
Q Consensus       211 l~~  213 (223)
                      +.+
T Consensus       218 ~~~  220 (395)
T TIGR03526       218 LNA  220 (395)
T ss_pred             hhh
Confidence            754

SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.

>PRK06133 glutamate carboxypeptidase; Reviewed

Probab=99.96  E-value=4.8e-28  Score=215.47  Aligned_cols=185  Identities=24%  Similarity=0.328  Sum_probs=150.5

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG   87 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a   87 (223)
                      -+++.++++++.++++++|++||+|||+|++..   ++.++++||+++|+++|++++.++....    +     .+||++
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~---~~~~~~~~l~~~L~~~G~~v~~~~~~~~----~-----~~~lia   92 (410)
T PRK06133         25 DAELLAAAQQEQPAYLDTLKELVSIESGSGDAE---GLKQVAALLAERLKALGAKVERAPTPPS----A-----GDMVVA   92 (410)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHHHHhCCCeEEEEccCCC----C-----CCeEEE
Confidence            466888999999999999999999999987533   5678999999999999999988765321    1     169999


Q ss_pred             EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305         88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT-  166 (223)
Q Consensus        88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~-  166 (223)
                      ++++. +.|+|+|+|||||||++  ..|+.+||.  +++|++||||++|||+|++++|.|++.|++.+..++++|.+++ 
T Consensus        93 ~~~g~-~~~~ill~~H~D~Vp~~--~~w~~~Pf~--~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~  167 (410)
T PRK06133         93 TFKGT-GKRRIMLIAHMDTVYLP--GMLAKQPFR--IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFN  167 (410)
T ss_pred             EECCC-CCceEEEEeecCccCCC--CccCCCCEE--EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence            98543 35899999999999986  359999994  7899999999999999999999999999998877777776543 


Q ss_pred             -----cc---------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHH
Q psy17305        167 -----GK---------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYE  207 (223)
Q Consensus       167 -----g~---------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~  207 (223)
                           |+               .+++++++..                   +.++|++..|..|+||+.   .+++.+..
T Consensus       168 ~dEE~g~~G~~~~~~~~~~~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~---~~~~~i~~  244 (410)
T PRK06133        168 PDEETGSPGSRELIAELAAQHDVVFSCEPGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALY---ELAHQLLQ  244 (410)
T ss_pred             CCcccCCccHHHHHHHHhccCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHH---HHHHHHHH
Confidence                 21               1344554432                   138999999999999999   99999888


Q ss_pred             HHhhh
Q psy17305        208 ISKVT  212 (223)
Q Consensus       208 l~~l~  212 (223)
                      |..+.
T Consensus       245 l~~~~  249 (410)
T PRK06133        245 LRDLG  249 (410)
T ss_pred             HHhcc
Confidence            87654

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.96  E-value=3.8e-28  Score=213.25  Aligned_cols=168  Identities=26%  Similarity=0.365  Sum_probs=138.0

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      +++++|++|++|||.|+      .+.+++++|.++|+++|++++....+.           .+|++++++.  ++|+|+|
T Consensus         3 ~~~~~l~~Lv~ips~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~n~~~~~g~--~~~~i~l   63 (375)
T PRK13009          3 DVLELAQDLIRRPSVTP------DDAGCQDLLAERLEALGFTCERMDFGD-----------VKNLWARRGT--EGPHLCF   63 (375)
T ss_pred             hHHHHHHHHhCCCCCCC------chhhHHHHHHHHHHHcCCeEEEeccCC-----------CcEEEEEecC--CCCEEEE
Confidence            57889999999999997      467899999999999999988765432           1699999854  3689999


Q ss_pred             EeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----------ccc-
Q psy17305        101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----------GKN-  169 (223)
Q Consensus       101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----------g~~-  169 (223)
                      +||+||||+++.+.|+++||.+.++||++||||++|||+|++++++|+++|++.+..++++|.+++          |.. 
T Consensus        64 ~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~  143 (375)
T PRK13009         64 AGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVK  143 (375)
T ss_pred             EeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHH
Confidence            999999999876789999999999999999999999999999999999999998877777776442          110 


Q ss_pred             --------------eeeccCccc----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        170 --------------VLLLPMGAS----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       170 --------------~~~~~~g~~----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                    +++.++...                      +.++|++ .|..|.||+.   .++..+.+|..+
T Consensus       144 ~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~-~p~~g~nAi~---~~~~~l~~l~~~  217 (375)
T PRK13009        144 VLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKGVQGHVA-YPHLADNPIH---LAAPALAELAAT  217 (375)
T ss_pred             HHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEecCcccC-CCCcccCHHH---HHHHHHHHHHhh
Confidence                          223332210                      2388997 6999999999   999999998765

>PRK07318 dipeptidase PepV; Reviewed

Probab=99.96  E-value=5.5e-28  Score=218.34  Aligned_cols=138  Identities=29%  Similarity=0.537  Sum_probs=113.2

Q ss_pred             HHHHHHHhcHHHHHHHHHHhhccCCCCCCCC------CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCc
Q psy17305         10 EISEYVESNKNKFIENLKEAVAIESVSSSVQ------HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP   83 (223)
Q Consensus        10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~------~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~   83 (223)
                      ++..+++.+.++++++|++||+|||+|+...      +.+++.++++|+.++|+++|++++..+                
T Consensus         4 ~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~----------------   67 (466)
T PRK07318          4 DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD----------------   67 (466)
T ss_pred             hHHHHHHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec----------------
Confidence            3677888888999999999999999987521      122577899999999999999987653                


Q ss_pred             EEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305         84 VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus        84 nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      |++++...+.+.++|+|+||+||||++  +.|+.+||.+.++||+|||||++|||+|++++++|++.|++.+.+++.+|.
T Consensus        68 n~~~~~~~~~~~~~l~l~gH~DvVp~~--~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~  145 (466)
T PRK07318         68 NYAGHIEYGEGEEVLGILGHLDVVPAG--DGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVR  145 (466)
T ss_pred             CccceEEECCCCCEEEEEEecCCCCCC--CCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEE
Confidence            334333111235789999999999997  369999999999999999999999999999999999999998887776665


Q ss_pred             Ee
Q psy17305        164 EV  165 (223)
Q Consensus       164 ~~  165 (223)
                      ++
T Consensus       146 l~  147 (466)
T PRK07318        146 FI  147 (466)
T ss_pred             EE
Confidence            43

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade

Probab=99.96  E-value=1.4e-27  Score=209.60  Aligned_cols=166  Identities=27%  Similarity=0.382  Sum_probs=136.1

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      +++|++|++|||+|+      ++.++++||.++|+++|++++....+.           .+|++++.+.  +.|+|+|+|
T Consensus         2 ~~~l~~lv~ips~s~------~e~~~~~~i~~~l~~~G~~~~~~~~~~-----------~~~~~~~~g~--~~~~i~~~~   62 (370)
T TIGR01246         2 TELAKELISRPSVTP------NDAGCQDIIAERLEKLGFEIEWMHFGD-----------TKNLWATRGT--GEPVLAFAG   62 (370)
T ss_pred             hHHHHHHhcCCCCCc------chHHHHHHHHHHHHHCCCEEEEEecCC-----------CceEEEEecC--CCcEEEEEc
Confidence            578999999999997      467899999999999999988876542           1599998754  368999999


Q ss_pred             ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----------cc----
Q psy17305        103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----------GK----  168 (223)
Q Consensus       103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----------g~----  168 (223)
                      |+||||+++.+.|+.+||.+.++||++||||++|||+|+++++.|++.|.+.+..++++|.+++          |.    
T Consensus        63 H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~  142 (370)
T TIGR01246        63 HTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVV  142 (370)
T ss_pred             cccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHH
Confidence            9999999877889999999999999999999999999999999999999998877777876442          11    


Q ss_pred             -----------ceeeccCccc----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 -----------NVLLLPMGAS----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 -----------~~~~~~~g~~----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                 .+++.+++..                      +.++|++ .|..|.||+.   .++..+..|..+
T Consensus       143 ~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G~~~H~~-~p~~g~nAi~---~~~~~i~~l~~~  214 (370)
T TIGR01246       143 ETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKGIQGHVA-YPHLANNPIH---KAAPALAELTAI  214 (370)
T ss_pred             HHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEccCcccC-CcccCCCHHH---HHHHHHHHHhhh
Confidence                       1233444321                      2388987 5899999999   999998888655

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.

>TIGR01886 dipeptidase dipeptidase PepV

Probab=99.96  E-value=1.5e-27  Score=215.42  Aligned_cols=138  Identities=28%  Similarity=0.484  Sum_probs=113.6

Q ss_pred             HHHHHHhcHHHHHHHHHHhhccCCCCCCCC------CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305         11 ISEYVESNKNKFIENLKEAVAIESVSSSVQ------HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus        11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~------~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      +.+++++++++++++|++||+|||.+....      +..++.++++++.++|+++||+++..+.                
T Consensus         4 ~~~~i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~----------------   67 (466)
T TIGR01886         4 FKEEVEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN----------------   67 (466)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC----------------
Confidence            466788888999999999999999986421      2346778999999999999999886542                


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      .++....+++.++|+|+|||||||++  +.|+.+||.+.++||+|||||++|||++++++|+|+++|++.++.++++|.+
T Consensus        68 ~~~~~~~~~~~~~l~~~gH~DvVp~~--~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~  145 (466)
T TIGR01886        68 YAGHVEYGAGDERLGIIGHMDVVPAG--EGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRF  145 (466)
T ss_pred             CceeEEecCCCCEEEEEeecccCCCC--CCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence            22222111235799999999999997  4699999999999999999999999999999999999999999888888875


Q ss_pred             ec
Q psy17305        165 VT  166 (223)
Q Consensus       165 ~~  166 (223)
                      ++
T Consensus       146 ~~  147 (466)
T TIGR01886       146 VV  147 (466)
T ss_pred             EE
Confidence            54

This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.

>PRK07079 hypothetical protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=213.14  Aligned_cols=146  Identities=30%  Similarity=0.468  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHH----HHHHHhcCCcEEEEecCCCCCCCCCCCCC
Q psy17305          6 EYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYF----ADKLKQLGATVEICDIGNQTLPNGESIKY   81 (223)
Q Consensus         6 ~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l----~~~l~~~G~~~~~~~~~~~~~~~g~~~~~   81 (223)
                      .+.+++.++++.  ++++++|++||+|||+|+.+.   ++..+++|+    .++|+++|++++..+....   .+     
T Consensus         5 ~~~~~~~~~~~~--~~~~~~L~~LV~ipSvs~~~~---~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~---~~-----   71 (469)
T PRK07079          5 AAIARAAAYFDS--GAFFADLARRVAYRTESQNPD---RAPALRAYLTDEIAPALAALGFTCRIVDNPVA---GG-----   71 (469)
T ss_pred             HHHHHHHHhhcc--HHHHHHHHHHhccCCCCCCcc---cHHHHHHHHHHHHHHHHHHCCCeEEEEecCCC---CC-----
Confidence            445667777764  579999999999999998644   345566665    5689999999987764310   12     


Q ss_pred             CcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCC--CCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-cCCC
Q psy17305         82 PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWN--TEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-KKNV  158 (223)
Q Consensus        82 ~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~--~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-~~~~  158 (223)
                      .+||+++++++++.|+|+|+||+||||++ .+.|+  ++||.+.++||+|||||++|||+|++++|+|+++|.+. +..+
T Consensus        72 ~~~vva~~~~~~~~~~lll~gH~DvVp~~-~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~  150 (469)
T PRK07079         72 GPFLIAERIEDDALPTVLIYGHGDVVRGY-DEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRL  150 (469)
T ss_pred             CCEEEEEeCCCCCCCEEEEEcccCCCCCC-hHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCC
Confidence            27999998544446899999999999986 46799  49999999999999999999999999999999998754 4667


Q ss_pred             ceeeEEe
Q psy17305        159 PVNIKEV  165 (223)
Q Consensus       159 ~~~i~~~  165 (223)
                      +++|.++
T Consensus       151 ~~~i~~~  157 (469)
T PRK07079        151 GFNVKLL  157 (469)
T ss_pred             CCCEEEE
Confidence            7777643

>PRK07906 hypothetical protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=211.77  Aligned_cols=133  Identities=25%  Similarity=0.404  Sum_probs=112.3

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-CCCCccEEEEE
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-NDKAKHTVLVY  101 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~~~~~~~ill~  101 (223)
                      +++|++||+|||+|......+++.++++||.++|+++|++++.++...     +     ..|++++++ .++..++|+|+
T Consensus         2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~-----~-----~~nv~~~~~g~~~~~~~lll~   71 (426)
T PRK07906          2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAP-----G-----RANVVARLPGADPSRPALLVH   71 (426)
T ss_pred             hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCC-----C-----ceEEEEEEeCCCCCCCcEEEE
Confidence            678999999999985432334788999999999999999998876542     1     169999984 33445799999


Q ss_pred             eccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       102 ~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      ||+||||++. +.|+.+||.+.++||++||||++|||+|++++|+|+++|++.+..++++|.+++
T Consensus        72 ~H~DtVp~~~-~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~  135 (426)
T PRK07906         72 GHLDVVPAEA-ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAF  135 (426)
T ss_pred             cccccCCCCc-ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence            9999999974 579999999999999999999999999999999999999999888887876543

>PRK09133 hypothetical protein; Provisional

Probab=99.95  E-value=7.9e-27  Score=211.08  Aligned_cols=176  Identities=24%  Similarity=0.335  Sum_probs=135.3

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT   97 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~   97 (223)
                      +.++++++|++||+|||+|+..    ++.++++||.++|+++|++++..+....  .++     .+|+++++++..+.++
T Consensus        35 ~~~~~~~~l~~Lv~i~S~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~--~~~-----~~nli~~~~g~~~~~~  103 (472)
T PRK09133         35 DQQAARDLYKELIEINTTASTG----STTPAAEAMAARLKAAGFADADIEVTGP--YPR-----KGNLVARLRGTDPKKP  103 (472)
T ss_pred             hHHHHHHHHHHHhccCCCCCCc----chHHHHHHHHHHHHHcCCCceEEEeccC--CCC-----ceeEEEEecCCCCCCc
Confidence            3578999999999999998542    4788999999999999998754432210  012     2699999854333578


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe-------ccc--
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV-------TGK--  168 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~-------~g~--  168 (223)
                      |+|+|||||||++. +.|+++||.+.++||+|||||++|||+|++++|+|+++|++.+..++++|.++       .|.  
T Consensus       104 lll~~H~DtVp~~~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G  182 (472)
T PRK09133        104 ILLLAHMDVVEAKR-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNG  182 (472)
T ss_pred             EEEEeecccCCCCh-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccch
Confidence            99999999999974 56999999999999999999999999999999999999999887777777543       221  


Q ss_pred             ---------------ceeeccCcc----------------------------cCCCCcCCCCccceecccchhhHHHHHH
Q psy17305        169 ---------------NVLLLPMGA----------------------------SDDGAHSQNEKIDVRNYIEGTKLLAAYL  205 (223)
Q Consensus       169 ---------------~~~~~~~g~----------------------------~~~~ahag~~~~~g~~ai~g~~~~a~~~  205 (223)
                                     .+++ +.+.                            ...++|++. |. +.||+.   .+++.+
T Consensus       183 ~~~l~~~~~~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~~~i~v~G~~~Hss~-p~-~~nAi~---~l~~~l  256 (472)
T PRK09133        183 VAWLAENHRDLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSSR-PT-KDNAIY---RLAAAL  256 (472)
T ss_pred             HHHHHHHHhhccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEEEEEEEecCCCCCCC-CC-CCChHH---HHHHHH
Confidence                           1222 2211                            023889985 54 589999   999999


Q ss_pred             HHHHhh
Q psy17305        206 YEISKV  211 (223)
Q Consensus       206 ~~l~~l  211 (223)
                      ..|..+
T Consensus       257 ~~l~~~  262 (472)
T PRK09133        257 SRLAAY  262 (472)
T ss_pred             HHHhhC
Confidence            988765

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Probab=99.95  E-value=5.1e-27  Score=206.36  Aligned_cols=178  Identities=28%  Similarity=0.417  Sum_probs=135.5

Q ss_pred             HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305         24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH  103 (223)
Q Consensus        24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H  103 (223)
                      ++|++|++|||.|....   ++.++++||.++|+++|++++..+.....   +.  ..+++++++.+ ....|+|+|+||
T Consensus         2 ~~l~~lv~i~s~~~~~~---~e~~~a~~l~~~l~~~G~~~~~~~~~~~~---~~--~~~~~~~~~~g-~~~~~~ill~~H   72 (375)
T TIGR01910         2 ELLKDLISIPSVNPPGG---NEETIANYIKDLLREFGFSTDVIEITDDR---LK--VLGKVVVKEPG-NGNEKSLIFNGH   72 (375)
T ss_pred             hhHHhhhcCCCCCCCCc---CHHHHHHHHHHHHHHCCCceEEEecCchh---cc--cccceEEeccC-CCCCCEEEEecc
Confidence            57899999999553211   57899999999999999999877653211   00  00013444444 334689999999


Q ss_pred             cccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---------
Q psy17305        104 LDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK---------  168 (223)
Q Consensus       104 ~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~---------  168 (223)
                      |||||+++.++|+++||.+.+++|++||||++|||+|++++|+|+++|++.+..++++|.+++      |+         
T Consensus        73 ~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~  152 (375)
T TIGR01910        73 YDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQR  152 (375)
T ss_pred             cccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHc
Confidence            999999877899999999999999999999999999999999999999998877777776543      21         


Q ss_pred             -------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhhh
Q psy17305        169 -------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQA  214 (223)
Q Consensus       169 -------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~~  214 (223)
                             .+++.+++..                  ..++|++. |..|.||+.   .+++.+..|..+.+.
T Consensus       153 ~~~~~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~-p~~g~nAi~---~~~~~l~~l~~~~~~  219 (375)
T TIGR01910       153 GYFKDADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAHASF-PQFGVNAIM---KLAKLITELNELEEH  219 (375)
T ss_pred             CCCCCCCEEEECCCCCCCceEEEecceEEEEEEEeeeecccCC-CCcchhHHH---HHHHHHHHHHHHHHH
Confidence                   1233443311                  13889885 889999999   999999999887643

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=205.93  Aligned_cols=182  Identities=32%  Similarity=0.451  Sum_probs=144.7

Q ss_pred             HHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCC
Q psy17305         15 VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKA   94 (223)
Q Consensus        15 i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~   94 (223)
                      .....+++++.|++|++|||.|.  .   .+.++++|++++|+++|+.++.+..+...   +     .+|++++++...+
T Consensus         8 ~~~~~~~~~~~l~~lv~~~s~s~--~---~~~~~~~~l~~~l~~~g~~~~~~~~~~~~---~-----~~n~~~~~~~~~~   74 (409)
T COG0624           8 SLDLLDDILELLKELVRIPSVSA--G---EEAEAAELLAEWLEELGFEVEEDEVGPGP---G-----RPNLVARLGGGDG   74 (409)
T ss_pred             HHHhhHHHHHHHHHHhcCCCCCc--c---cchHHHHHHHHHHHHcCCceEEeecCCCC---C-----ceEEEEEecCCCC
Confidence            33445778899999999999991  1   57899999999999999999988876321   1     1599999976544


Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc------
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK------  168 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~------  168 (223)
                      .|+|+|+||+||||++....|..+||.+++++|+|||||++|||++++++++|++.+.+.+..++.+|.++++.      
T Consensus        75 ~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~  154 (409)
T COG0624          75 GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG  154 (409)
T ss_pred             CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC
Confidence            48999999999999997778999999999999999999999999999999999999999888888888765431      


Q ss_pred             -------------------ceeeccCccc----------------------CCCCcCCCC-ccceec----ccchhhHHH
Q psy17305        169 -------------------NVLLLPMGAS----------------------DDGAHSQNE-KIDVRN----YIEGTKLLA  202 (223)
Q Consensus       169 -------------------~~~~~~~g~~----------------------~~~ahag~~-~~~g~~----ai~g~~~~a  202 (223)
                                         .+++.|+...                      ...+|++.. |..|.|    |+.   .++
T Consensus       155 ~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~---~~~  231 (409)
T COG0624         155 AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIE---ALA  231 (409)
T ss_pred             cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHH---HHH
Confidence                               1445555110                      126799985 888999    666   666


Q ss_pred             HHHHHHHhhh
Q psy17305        203 AYLYEISKVT  212 (223)
Q Consensus       203 ~~~~~l~~l~  212 (223)
                      +++..+..+.
T Consensus       232 ~~~~~~~~~~  241 (409)
T COG0624         232 ELIEELGDLA  241 (409)
T ss_pred             HHHHHhcccc
Confidence            6666665443

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)

Probab=99.95  E-value=1.1e-26  Score=203.14  Aligned_cols=169  Identities=24%  Similarity=0.341  Sum_probs=132.2

Q ss_pred             HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305         24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH  103 (223)
Q Consensus        24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H  103 (223)
                      ++|++||+|||+|++     .+.++++||.++|+++|++++.++.....   +     .+|+++.+++. +.++|+|+||
T Consensus         1 ~~l~~lv~i~S~s~~-----~~~~~~~~l~~~l~~~G~~~~~~~~~~~~---~-----~~nl~~~~~~~-~~~~i~l~~H   66 (364)
T TIGR01892         1 EILTKLVAFDSTSFR-----PNVDLIDWAQAYLEALGFSVEVQPFPDGA---E-----KSNLVAVIGPS-GAGGLALSGH   66 (364)
T ss_pred             ChHHHhhCcCCcCCc-----cHHHHHHHHHHHHHHcCCeEEEEeCCCCC---c-----cccEEEEecCC-CCCeEEEEcc
Confidence            368999999999974     23689999999999999999887754210   1     26999998643 3579999999


Q ss_pred             cccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---------
Q psy17305        104 LDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK---------  168 (223)
Q Consensus       104 ~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~---------  168 (223)
                      +||||.++ +.|+.+||.+.+++|++||||++|||++++++|+|+++|++.+.  +.+|.+++      |.         
T Consensus        67 ~Dtvp~~~-~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~v~~~~~~~EE~g~~G~~~~~~~  143 (364)
T TIGR01892        67 TDVVPYDD-AAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQL--KKPLHLALTADEEVGCTGAPKMIEA  143 (364)
T ss_pred             cccccCCC-CcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcCc--CCCEEEEEEeccccCCcCHHHHHHh
Confidence            99999975 68999999999999999999999999999999999999988654  44454332      21         


Q ss_pred             ------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 ------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 ------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                            .+++.+++.                 .+.++|++ .|..|.||+.   .+++.+..|..+.+
T Consensus       144 ~~~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~~~~  207 (364)
T TIGR01892       144 GAGRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHSS-YPDSGVNAIF---RAGRFLQRLVHLAD  207 (364)
T ss_pred             cCCCCCEEEECCCCCceeEEeeceEEEEEEEEEccccccc-CCccCcCHHH---HHHHHHHHHHHHHH
Confidence                  122223311                 12488988 6889999999   99999999987754

This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase

Probab=99.95  E-value=3.1e-26  Score=203.10  Aligned_cols=173  Identities=19%  Similarity=0.316  Sum_probs=134.5

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCccEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKHTV   98 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~~i   98 (223)
                      +++++.|++||+|||+++..    ++.++++||.++|+++|++++..+...     |+     +|+++++.+ ++..|+|
T Consensus         9 ~~~~~~l~~lv~ipS~~~~~----~~~~~~~~l~~~l~~~G~~~~~~~~~~-----g~-----~~l~~~~~g~~~~~~~i   74 (400)
T TIGR01880         9 DIAVTRFREYLRINTVQPNP----DYAACVDFLIKQADELGLARKTIEFVP-----GK-----PVVVLTWPGSNPELPSI   74 (400)
T ss_pred             HHHHHHHHHHhccCccCCCc----cHHHHHHHHHHHHHhCCCceeEEEecC-----Cc-----eeEEEEEecCCCCCCeE
Confidence            67899999999999998742    367899999999999999987765421     21     699998843 3334899


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK---  168 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~---  168 (223)
                      +|+|||||||+++ ..|+++||.+.+ +||+|||||++|||++++++++|++.|++.+.+++++|.+++      |+   
T Consensus        75 ~l~~H~DvVp~~~-~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G  153 (400)
T TIGR01880        75 LLNSHTDVVPVFR-EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDG  153 (400)
T ss_pred             EEEcccccCCCCc-ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhH
Confidence            9999999999975 579999999877 699999999999999999999999999998887777776443      21   


Q ss_pred             --------------ceeeccCccc-----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 --------------NVLLLPMGAS-----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 --------------~~~~~~~g~~-----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                    ..++++.|..                       ...+|++..+  +.||+.   .|+..+..|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~--~~nai~---~l~~~i~~l~~~  228 (400)
T TIGR01880       154 MEKFAKTDEFKALNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLM--ENTAME---KLEKSVESIRRF  228 (400)
T ss_pred             HHHHHHhhhccCCceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCC--CCCHHH---HHHHHHHHHHHh
Confidence                          0333322210                       1288988633  468888   888888877776


Q ss_pred             h
Q psy17305        212 T  212 (223)
Q Consensus       212 ~  212 (223)
                      .
T Consensus       229 ~  229 (400)
T TIGR01880       229 R  229 (400)
T ss_pred             h
Confidence            4

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.

>PRK05111 acetylornithine deacetylase; Provisional

Probab=99.95  E-value=2e-26  Score=202.94  Aligned_cols=176  Identities=27%  Similarity=0.381  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhhccCCCCCCCC-CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQ-HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~-~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      ++++++|++|++|||+|++.. ..+.+.++++||.++|+++|++++.++....   ++     ..|++++++..  .++|
T Consensus         5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~---~~-----~~nvia~~g~~--~~~i   74 (383)
T PRK05111          5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGT---RG-----KFNLLASLGSG--EGGL   74 (383)
T ss_pred             hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCC---CC-----CceEEEEeCCC--CCeE
Confidence            478999999999999997543 1224578999999999999999888765311   01     26999999543  3589


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc----
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK----  168 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~----  168 (223)
                      +|+|||||||++ .+.|+.+||.+.++||++||||++|||++++++|.|++.|++.+  ++.+|.+++      |+    
T Consensus        75 l~~~H~Dvvp~~-~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~~G~~  151 (383)
T PRK05111         75 LLAGHTDTVPFD-EGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSMAGAR  151 (383)
T ss_pred             EEEeeeceecCC-CCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCcccHH
Confidence            999999999986 36799999999999999999999999999999999999998754  455565432      21    


Q ss_pred             -----------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        169 -----------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       169 -----------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                                 .+++.+++.                 ...++|++ .|..|+||+.   .+++.+..|..+.
T Consensus       152 ~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~---~~~~~i~~l~~~~  219 (383)
T PRK05111        152 AFAEATAIRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHSS-DPALGVNAIE---LMHDVIGELLQLR  219 (383)
T ss_pred             HHHhcCCCCCCEEEEcCCCCCceeecccceEEEEEEEEeechhcc-CCccCcCHHH---HHHHHHHHHHHHH
Confidence                       122223221                 02378986 7889999999   8999898887765

>PRK07522 acetylornithine deacetylase; Provisional

Probab=99.95  E-value=3e-26  Score=201.92  Aligned_cols=172  Identities=23%  Similarity=0.371  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      .+++++|++||+|||+|++.     ..++++||.++|+++|+++++++....    +     .+|++++++++ ..|+|+
T Consensus         4 ~~~~~~l~~lv~i~S~s~~~-----~~~~~~~l~~~l~~~G~~~~~~~~~~~----~-----~~nv~a~~~~~-~~~~il   68 (385)
T PRK07522          4 MSSLDILERLVAFDTVSRDS-----NLALIEWVRDYLAAHGVESELIPDPEG----D-----KANLFATIGPA-DRGGIV   68 (385)
T ss_pred             hhHHHHHHHHhCCCCcCCCc-----cHHHHHHHHHHHHHcCCeEEEEecCCC----C-----cccEEEEeCCC-CCCeEE
Confidence            46889999999999999742     348999999999999999887654311    1     16999998654 368999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc-----
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK-----  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~-----  168 (223)
                      |+||+||||+++ +.|+.+||.+.++||++||||++|||++++++|.|+++|++.+.  +++|.++      .|+     
T Consensus        69 l~~H~Dtv~~~~-~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~i~~~~~~dEE~g~~G~~~  145 (385)
T PRK07522         69 LSGHTDVVPVDG-QAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAPL--RRPLHLAFSYDEEVGCLGVPS  145 (385)
T ss_pred             EEeecccccCCC-CCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCCC--CCCEEEEEEeccccCCccHHH
Confidence            999999999974 57999999999999999999999999999999999999988754  3444322      221     


Q ss_pred             -------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 -------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 -------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                                   .++..++..                 .+.++|++. |..|+||+.   .+++.+..|..+.+
T Consensus       146 l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs~~-p~~g~nAi~---~~~~~i~~l~~~~~  216 (385)
T PRK07522        146 MIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHSSL-APQGVNAIE---YAARLIAHLRDLAD  216 (385)
T ss_pred             HHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeeccccCC-CccCcCHHH---HHHHHHHHHHHHHH
Confidence                         012222210                 023889885 568999999   99999999987753

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.94  E-value=7.2e-26  Score=200.14  Aligned_cols=179  Identities=26%  Similarity=0.317  Sum_probs=135.2

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT   97 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~   97 (223)
                      ..++++++|++||+|||+|+...   ++.++++||.++|+++|++++.+..+....  ......++|++++.+.+  .|+
T Consensus         4 ~~~~~~~~l~~lv~i~S~s~~~~---~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~   76 (394)
T PRK08651          4 MMFDIVEFLKDLIKIPTVNPPGE---NYEEIAEFLRDTLEELGFSTEIIEVPNEYV--KKHDGPRPNLIARRGSG--NPH   76 (394)
T ss_pred             hHHHHHHHHHHHhcCCccCCCCc---CHHHHHHHHHHHHHHcCCeEEEEecCcccc--ccccCCcceEEEEeCCC--Cce
Confidence            45789999999999999985333   577899999999999999998887653210  00000025788876543  489


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc---
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK---  168 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~---  168 (223)
                      |+|+|||||||+++.. |..+||.+.+++|++||||++|||+|++++|+|++.|++.+   +++|.++      .|+   
T Consensus        77 ill~~HlDtvp~~~~~-~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~  152 (394)
T PRK08651         77 LHFNGHYDVVPPGEGW-SVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGT  152 (394)
T ss_pred             EEEEeeeeeecCCCCc-cccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhH
Confidence            9999999999997432 69999999999999999999999999999999999998876   4455433      221   


Q ss_pred             ------------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 ------------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 ------------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                  .+++.++...                  ..++|++ .|..|.||+.   .+++.+..|..+
T Consensus       153 ~~~~~~~~~~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nAi~---~~~~~i~~l~~~  221 (394)
T PRK08651        153 GYLVEEGKVTPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAHAS-TPWLGINAFE---AAAKIAERLKSS  221 (394)
T ss_pred             HHHHhccCCCCCEEEEecCCCCCceEEecccEEEEEEEEEEeccccC-CCccccCHHH---HHHHHHHHHHHH
Confidence                        1233333221                  2388988 5889999999   999999988654

>PRK08262 hypothetical protein; Provisional

Probab=99.93  E-value=2e-25  Score=202.62  Aligned_cols=138  Identities=23%  Similarity=0.346  Sum_probs=112.9

Q ss_pred             HhcHHHHHHHHHHhhccCCCCCCCCC---chHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc-CC
Q psy17305         16 ESNKNKFIENLKEAVAIESVSSSVQH---RPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL-GN   91 (223)
Q Consensus        16 ~~~~~~~i~~l~~lv~i~s~s~~~~~---~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~-~~   91 (223)
                      ..+.++++++|++||+|||+|+.+..   .....++++||+++|+.+|+.++....+.            .|+++.+ ++
T Consensus        40 ~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~------------~~vv~~~~g~  107 (486)
T PRK08262         40 AVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGG------------HSLLYTWKGS  107 (486)
T ss_pred             cCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECC------------ccEEEEEECC
Confidence            34568899999999999999986431   23345789999999999999888776642            3566565 54


Q ss_pred             CCCccEEEEEeccccCCCCCC--CCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         92 DKAKHTVLVYGHLDVQPAEKE--DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        92 ~~~~~~ill~~H~DtVp~~~~--~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      ++..++|+|+||+||||+++.  +.|+++||.+.++||+|||||++|||+|++++|.|++.|++.+..++++|.++
T Consensus       108 ~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~ll  183 (486)
T PRK08262        108 DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLA  183 (486)
T ss_pred             CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence            443489999999999998642  56999999999999999999999999999999999999999887777787644

>PRK08737 acetylornithine deacetylase; Provisional

Probab=99.93  E-value=1.6e-25  Score=196.45  Aligned_cols=169  Identities=20%  Similarity=0.282  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++++++|++||+|||.++...  .++.++++|++++|+  |++++.++.+.     +     ..|+++..+    .|+|
T Consensus         5 ~~~~~~~l~~Lv~i~s~~~~~~--~~e~~~~~~l~~~l~--g~~~~~~~~~~-----~-----~~nli~~~g----~~~l   66 (364)
T PRK08737          5 LESTLDHLQALVSFDTRNPPRA--ITTGGIFDYLRAQLP--GFQVEVIDHGA-----G-----AVSLYAVRG----TPKY   66 (364)
T ss_pred             HHHHHHHHHHHhCCCCcCCCCC--CCcHHHHHHHHHHhC--CCEEEEecCCC-----C-----ceEEEEEcC----CCeE
Confidence            3578999999999999864221  134789999999997  99988777542     2     269998753    3789


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc----------
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK----------  168 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~----------  168 (223)
                      +|+||+||||++  +.|+.+||.+.++||+|||||++|||+|+++++.|++.+ ...+.+-.+.+|+.|+          
T Consensus        67 ll~gH~DtVp~~--~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~~-~~~v~~~~~~dEE~g~~~g~~~~~~~  143 (364)
T PRK08737         67 LFNVHLDTVPDS--PHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANAG-DGDAAFLFSSDEEANDPRCVAAFLAR  143 (364)
T ss_pred             EEEeeeCCCCCC--CCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHcc-CCCEEEEEEcccccCchhhHHHHHHh
Confidence            999999999996  369999999999999999999999999999999998752 1111122222344332          


Q ss_pred             -----ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 -----NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 -----~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                           .+++.|+...                 +.++|++..+..|+||+.   .+++++.++..+
T Consensus       144 ~~~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~---~~~~~l~~~~~~  205 (364)
T PRK08737        144 GIPYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALH---QAMRWGGQALDH  205 (364)
T ss_pred             CCCCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCCHHH---HHHHHHHHHHHH
Confidence                 1344444321                 248999987789999999   999998876543

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase

Probab=99.93  E-value=1.5e-25  Score=197.29  Aligned_cols=165  Identities=18%  Similarity=0.198  Sum_probs=124.3

Q ss_pred             HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305         25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH  103 (223)
Q Consensus        25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H  103 (223)
                      +|++||+|||+|+      .+.++++||.++|+++|+. ++....+             .||+++++.+ ..++|+|+||
T Consensus         1 ll~~Lv~ipS~s~------~e~~~~~~i~~~l~~~g~~~~~~~~~~-------------~nvva~~~~~-~~~~l~l~gH   60 (373)
T TIGR01900         1 LLQQIMDIFSPSD------HEGPIADEIEAALNNLELEGLEVFRFG-------------DNVLARTDFG-KASRVILAGH   60 (373)
T ss_pred             ChHHHhCCCCCCc------hHHHHHHHHHHHHhhccccCceEEEEC-------------CEEEEecCCC-CCCeEEEeCc
Confidence            4789999999997      5778999999999999753 3333322             4999998543 3578999999


Q ss_pred             cccCCCCC--CCCCCCCCC--------ceeeeCCeEEecCCCCCchhHHHHHHHHHHHHH--ccCCCceeeEEec-----
Q psy17305        104 LDVQPAEK--EDGWNTEPF--------VLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ--TKKNVPVNIKEVT-----  166 (223)
Q Consensus       104 ~DtVp~~~--~~~w~~~P~--------~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~--~~~~~~~~i~~~~-----  166 (223)
                      |||||+++  ...|+.+||        .+.++||+|||||++|||+|++++|+|+++|.+  .+..++++|.+++     
T Consensus        61 ~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE  140 (373)
T TIGR01900        61 IDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEE  140 (373)
T ss_pred             cccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEeccc
Confidence            99999874  245988765        567899999999999999999999999999964  3445566665332     


Q ss_pred             -c-c------------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHH
Q psy17305        167 -G-K------------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEIS  209 (223)
Q Consensus       167 -g-~------------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~  209 (223)
                       | +                  .+++.|+...                 +.++|++ .|..|.||+.   .+++.+.+|.
T Consensus       141 ~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s-~p~~g~NAi~---~~~~~i~~l~  216 (373)
T TIGR01900       141 VAAEKNGLGHIRDAHPDWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSA-RAWLGDNAIH---KAADIINKLA  216 (373)
T ss_pred             ccCCCCCHHHHHHhCcccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccC-CCCCCCCHHH---HHHHHHHHHH
Confidence             1 0                  0233333211                 2388988 6889999999   9999999998


Q ss_pred             hhhh
Q psy17305        210 KVTQ  213 (223)
Q Consensus       210 ~l~~  213 (223)
                      .+.+
T Consensus       217 ~l~~  220 (373)
T TIGR01900       217 AYEA  220 (373)
T ss_pred             Hhhc
Confidence            7754

This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.

>PRK15026 aminoacyl-histidine dipeptidase; Provisional

Probab=99.93  E-value=3.1e-25  Score=200.82  Aligned_cols=166  Identities=18%  Similarity=0.209  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC--C-CCc
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN--D-KAK   95 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~--~-~~~   95 (223)
                      .++++++|++|++|||+|+      .+.++++||.++++++|++++.++.+              |+++++..  + ...
T Consensus         9 ~~~~~~~l~~Lv~ips~S~------~e~~~~~~l~~~~~~~G~~~~~d~~g--------------nvi~~~~~~~g~~~~   68 (485)
T PRK15026          9 PQPLWDIFAKICSIPHPSY------HEEQLAEYIVGWAKEKGFHVERDQVG--------------NILIRKPATAGMENR   68 (485)
T ss_pred             HHHHHHHHHHHhCCCCCCC------CHHHHHHHHHHHHHhCCCEEEEEecC--------------eEEEEEcCCCCCCCC
Confidence            4679999999999999998      46699999999999999999887654              77777532  1 246


Q ss_pred             cEEEEEeccccCCCCCC---CCCCCCCCceeeeCCeEEecCC---CCCchhHHHHHHHHHHHHHccCCCceeeEE-----
Q psy17305         96 HTVLVYGHLDVQPAEKE---DGWNTEPFVLTLKDEKLYGRGA---SDDKGPVLGWLHAIEAFQQTKKNVPVNIKE-----  164 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~---~~w~~~P~~~~~~~~~lyGrG~---~D~K~gv~~~l~al~~l~~~~~~~~~~i~~-----  164 (223)
                      |+|+|.|||||||++..   ..|..+||.+.++||++||||+   +|||+|++++|+++   ++.+.. +.+|.+     
T Consensus        69 ~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~-~~~i~~l~t~d  144 (485)
T PRK15026         69 KPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENVV-HGPLEVLLTMT  144 (485)
T ss_pred             CEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCCC-CCCEEEEEEcc
Confidence            89999999999998643   2599999999999999999999   59999999988876   344433 334433     


Q ss_pred             -eccc--------------ceeeccCccc------------------------------------C-CCCcCCCCcccee
Q psy17305        165 -VTGK--------------NVLLLPMGAS------------------------------------D-DGAHSQNEKIDVR  192 (223)
Q Consensus       165 -~~g~--------------~~~~~~~g~~------------------------------------~-~~ahag~~~~~g~  192 (223)
                       +.|.              .++++++...                                    + .++|||.++..|+
T Consensus       145 EE~G~~ga~~l~~~~~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~  224 (485)
T PRK15026        145 EEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGL  224 (485)
T ss_pred             cccCcHhHHHhhhccCCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCC
Confidence             3332              2444544310                                    1 3799999999999


Q ss_pred             -cccchhhHHHHHHHHHHhh
Q psy17305        193 -NYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       193 -~ai~g~~~~a~~~~~l~~l  211 (223)
                       ||+.   +|++++.++..-
T Consensus       225 ~nAi~---~la~~l~~~~~~  241 (485)
T PRK15026        225 GNANK---LLVRFLAGHAEE  241 (485)
T ss_pred             ccHHH---HHHHHHHHhHhh
Confidence             9999   999999996533

>PRK04443 acetyl-lysine deacetylase; Provisional

Probab=99.92  E-value=1.6e-24  Score=188.92  Aligned_cols=154  Identities=22%  Similarity=0.294  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++|++|||+|+      .+.++++|+.++|+++|++++.+..              .|+++++++  ..|+|+
T Consensus         6 ~~~~~~l~~Lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~--------------~n~i~~~~~--~~~~l~   63 (348)
T PRK04443          6 LEARELLKGLVEIPSPSG------EEAAAAEFLVEFMESHGREAWVDEA--------------GNARGPAGD--GPPLVL   63 (348)
T ss_pred             HHHHHHHHHHHcCCCCCC------ChHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEcCC--CCCEEE
Confidence            568999999999999997      4679999999999999999876543              388898853  258999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc-----
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK-----  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~-----  168 (223)
                      |+||+||||..       .||  .++||++||||++|||+|++++++|+++|   +..++++|.+++      |+     
T Consensus        64 ~~~H~DtVp~~-------~p~--~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~  131 (348)
T PRK04443         64 LLGHIDTVPGD-------IPV--RVEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGAR  131 (348)
T ss_pred             EEeeccccCCC-------CCc--EeeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHH
Confidence            99999999963       366  57899999999999999999999999998   345666665443      21     


Q ss_pred             ---------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 ---------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 ---------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                               .+++.|+...                  ..++|++. |  |.||+.   .+++++..|..+.+
T Consensus       132 ~l~~~~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~-~--g~NAi~---~~~~~l~~l~~~~~  197 (348)
T PRK04443        132 LVADRERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAG-P--EPNAAE---DAIEWWLAVEAWFE  197 (348)
T ss_pred             HHHhccCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCC-C--CCCHHH---HHHHHHHHHHHHHh
Confidence                     1445554321                  13789884 3  899999   99999999887654

>PRK08554 peptidase; Reviewed

Probab=99.92  E-value=3.5e-24  Score=192.09  Aligned_cols=129  Identities=29%  Similarity=0.508  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      +++++|++||+|||.+........+.++++|+.++|+++|++++..+...           .+|+++.++.  +.++|+|
T Consensus         2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~~l~~~~~~--~~~~l~l   68 (438)
T PRK08554          2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDG-----------YYAVYGEIGE--GKPKLLF   68 (438)
T ss_pred             hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCC-----------ceEEEEEeCC--CCCEEEE
Confidence            47889999999999875332233578899999999999999988776531           1599998753  3478999


Q ss_pred             EeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      +||+||||+++ +.|..+||.+.++||++||||++|||+|++++|+|+++|++.+  ++.+|.++
T Consensus        69 ~gH~DtVp~~~-~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~  130 (438)
T PRK08554         69 MAHFDVVPVNP-EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFA  130 (438)
T ss_pred             EeccccCCCCc-cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEE
Confidence            99999999974 4699999999999999999999999999999999999998754  44556543

>PRK06156 hypothetical protein; Provisional

Probab=99.92  E-value=5.3e-24  Score=194.73  Aligned_cols=134  Identities=28%  Similarity=0.434  Sum_probs=108.1

Q ss_pred             HhcHHHHHHHHHHhhccCCCCCCC---CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE-EEcCC
Q psy17305         16 ESNKNKFIENLKEAVAIESVSSSV---QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL-GNLGN   91 (223)
Q Consensus        16 ~~~~~~~i~~l~~lv~i~s~s~~~---~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~-a~~~~   91 (223)
                      +++.++++++|++||+|||+|...   ...+....+++||.++|+++|++++..  +             ++++ +++++
T Consensus        42 ~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~-------------~~v~~~~~~g  106 (520)
T PRK06156         42 LKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--D-------------NRVLEIGLGG  106 (520)
T ss_pred             hhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--C-------------CeEEEEEecC
Confidence            456678999999999999998531   111234577899999999999987532  1             3454 66653


Q ss_pred             CCCccEEEEEeccccCCCCCCCCCCC-----CCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         92 DKAKHTVLVYGHLDVQPAEKEDGWNT-----EPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        92 ~~~~~~ill~~H~DtVp~~~~~~w~~-----~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      . ..|+|+|+|||||||++. +.|.+     +||.+.++||+|||||++|||+|++++++|++.|++.+.+++++|.+++
T Consensus       107 ~-~~~~l~l~gH~DvVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~  184 (520)
T PRK06156        107 S-GSDKVGILTHADVVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLV  184 (520)
T ss_pred             C-CCCeEEEEEecCccCCCC-ccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence            3 357999999999999974 57999     9999999999999999999999999999999999998887777776543

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase

Probab=99.92  E-value=5.7e-24  Score=192.72  Aligned_cols=169  Identities=20%  Similarity=0.252  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC---CCc
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND---KAK   95 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~---~~~   95 (223)
                      .++++++|++|++|||+|+      .+.++++||.++|+++|+++++++.+              |+++++++.   +..
T Consensus         3 ~~~~~~~l~~l~~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~--------------n~~~~~~~~~g~~~~   62 (477)
T TIGR01893         3 PSRVFKYFEEISKIPRPSK------NEKEVSNFIVNWAKKLGLEVKQDEVG--------------NVLIRKPATPGYENH   62 (477)
T ss_pred             HHHHHHHHHHHHcCCCCCc------cHHHHHHHHHHHHHHcCCeEEEeCCC--------------eEEEEEcCCCCCCCC
Confidence            3678999999999999886      57789999999999999999887643              899987432   245


Q ss_pred             cEEEEEeccccCCCCCC---CCCCCCCCceeeeCCeEEecCCC---CCchhHHHHHHHHHHHHHccCCCceeeEE-----
Q psy17305         96 HTVLVYGHLDVQPAEKE---DGWNTEPFVLTLKDEKLYGRGAS---DDKGPVLGWLHAIEAFQQTKKNVPVNIKE-----  164 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~---~~w~~~P~~~~~~~~~lyGrG~~---D~K~gv~~~l~al~~l~~~~~~~~~~i~~-----  164 (223)
                      |+|+|+|||||||++..   ..|..+||.+.++||++||||++   |||+|++++|++++.   .+. .+.+|.+     
T Consensus        63 ~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~d  138 (477)
T TIGR01893        63 PPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVD  138 (477)
T ss_pred             CeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEec
Confidence            88999999999998742   36999999999999999999995   999999999988764   332 2224432     


Q ss_pred             -eccc---cee-----------ec-----------c------------------Cc-------ccC-CCCcCCCCcccee
Q psy17305        165 -VTGK---NVL-----------LL-----------P------------------MG-------ASD-DGAHSQNEKIDVR  192 (223)
Q Consensus       165 -~~g~---~~~-----------~~-----------~------------------~g-------~~~-~~ahag~~~~~g~  192 (223)
                       ++|.   ..+           .+           +                  .|       +.+ .++|+|..|..|+
T Consensus       139 EE~g~~Gs~~l~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r  218 (477)
T TIGR01893       139 EETGMDGALGLDENWLSGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGR  218 (477)
T ss_pred             cccCchhhhhcChhhcCCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCC
Confidence             2221   100           00           0                  01       123 6799999999996


Q ss_pred             -cccchhhHHHHHHHHHHhhhhh
Q psy17305        193 -NYIEGTKLLAAYLYEISKVTQA  214 (223)
Q Consensus       193 -~ai~g~~~~a~~~~~l~~l~~~  214 (223)
                       ||+.   .+++++.+|..+.++
T Consensus       219 ~nAi~---~aa~~i~~l~~~~~~  238 (477)
T TIGR01893       219 ANANK---LMARVLNELKENLNF  238 (477)
T ss_pred             cCHHH---HHHHHHHhhhhcCCe
Confidence             9999   999999999876543

>PRK13381 peptidase T; Provisional

Probab=99.91  E-value=6.4e-24  Score=188.56  Aligned_cols=175  Identities=14%  Similarity=0.228  Sum_probs=126.0

Q ss_pred             HHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCc
Q psy17305         21 KFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAK   95 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~   95 (223)
                      +++++|.+|++|||+|.+.    +.++++.++++||.++|+++|++....+ +            .+||++++++ +++.
T Consensus         2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~-~------------~~nvi~~~~g~~~~~   68 (404)
T PRK13381          2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVID-E------------HAIVTAKLPGNTPGA   68 (404)
T ss_pred             cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEc-C------------CeEEEEEEecCCCCC
Confidence            3678999999999999852    1234677999999999999999644332 1            1699999854 3334


Q ss_pred             cEEEEEeccccCCCCCCC-------CCCCCCCcee------------------eeCCeEEecCC----CCCchhHHHHHH
Q psy17305         96 HTVLVYGHLDVQPAEKED-------GWNTEPFVLT------------------LKDEKLYGRGA----SDDKGPVLGWLH  146 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~-------~w~~~P~~~~------------------~~~~~lyGrG~----~D~K~gv~~~l~  146 (223)
                      |+|+|+||+||||++...       .|..+||.+.                  .+++++||||+    +|||+|++++|.
T Consensus        69 ~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~  148 (404)
T PRK13381         69 PRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMT  148 (404)
T ss_pred             CeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHH
Confidence            899999999999986320       1444443322                  25778999999    999999999999


Q ss_pred             HHHHHHHccCCCceeeEEe------ccc---c-----------eeeccCcc------------------cCCCCcCCCCc
Q psy17305        147 AIEAFQQTKKNVPVNIKEV------TGK---N-----------VLLLPMGA------------------SDDGAHSQNEK  188 (223)
Q Consensus       147 al~~l~~~~~~~~~~i~~~------~g~---~-----------~~~~~~g~------------------~~~~ahag~~~  188 (223)
                      |+++|.+.+ .+..+|.++      .|+   .           +++++.+.                  .+.++|++..|
T Consensus       149 a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aHa~~~p  227 (404)
T PRK13381        149 LLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLARFPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAHPMSAK  227 (404)
T ss_pred             HHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHhcCCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecCCCCCc
Confidence            999998875 345566433      221   1           22222221                  12389988778


Q ss_pred             cceecccchhhHHHHHHHHHHhhh
Q psy17305        189 IDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       189 ~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                      ..|.||+.   .+++.+.+|..+.
T Consensus       228 ~~g~NAI~---~a~~~i~~l~~~~  248 (404)
T PRK13381        228 GVLVNPIL---MANDFISHFPRQE  248 (404)
T ss_pred             ccCcCHHH---HHHHHHHhCCccC
Confidence            89999999   9999999887764

>TIGR01887 dipeptidaselike dipeptidase, putative

Probab=99.91  E-value=1.4e-23  Score=188.61  Aligned_cols=129  Identities=30%  Similarity=0.504  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhhccCCCCCCC--C----CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCC
Q psy17305         20 NKFIENLKEAVAIESVSSSV--Q----HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDK   93 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~--~----~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~   93 (223)
                      ++++++|++||+|||+|...  .    ..+++.++++|+.++|+++|++++....              ...++.++.  
T Consensus         2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--------------~~~~~~~~~--   65 (447)
T TIGR01887         2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN--------------YAGYAEYGQ--   65 (447)
T ss_pred             hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC--------------ceEEEEeCC--
Confidence            46899999999999998431  1    1234678999999999999999874321              112233332  


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      ..|+|+|+||+||||+++  .|.++||.+.+++|+|||||++|||+++++++.|+++|++.+.+++++|.+++
T Consensus        66 ~~~~l~l~gH~D~Vp~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~  136 (447)
T TIGR01887        66 GEEYLGILGHLDVVPAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIF  136 (447)
T ss_pred             CCCeEEEEeecCCCCCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence            357999999999999974  69999999999999999999999999999999999999999887777776544

This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.

>PRK08652 acetylornithine deacetylase; Provisional

Probab=99.91  E-value=3.3e-23  Score=179.99  Aligned_cols=157  Identities=25%  Similarity=0.254  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      +++++++++|++|||+|+      ++.++++||.++|+++|++++.+..+..           .|+++  +   ++|+|+
T Consensus         2 ~~~~~~~~~lv~ips~s~------~e~~~~~~l~~~l~~~G~~v~~~~~~~~-----------~~~~~--~---~~~~i~   59 (347)
T PRK08652          2 ERAKELLKQLVKIPSPSG------QEDEIALHIMEFLESLGYDVHIESDGEV-----------INIVV--N---SKAELF   59 (347)
T ss_pred             hhHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCEEEEEecCce-----------eEEEc--C---CCCEEE
Confidence            578899999999999997      4678999999999999999887665421           46666  2   258999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc-----
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK-----  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~-----  168 (223)
                      |+|||||||..      .+|   .++||++||||++|||+|++++|.|++.|.+...  +.+|.++      .|+     
T Consensus        60 l~~H~D~vp~~------~~~---~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~v~~~~~~dEE~g~~G~~~  128 (347)
T PRK08652         60 VEVHYDTVPVR------AEF---FVDGVYVYGTGACDAKGGVAAILLALEELGKEFE--DLNVGIAFVSDEEEGGRGSAL  128 (347)
T ss_pred             EEccccccCCC------CCC---EEECCEEEeccchhhhHHHHHHHHHHHHHhhccc--CCCEEEEEecCcccCChhHHH
Confidence            99999999975      123   4689999999999999999999999999986543  2344332      221     


Q ss_pred             --------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 --------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 --------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                              .+++++++..                 +.++|++ .|..|.||+.   .+++.+..|..+.+
T Consensus       129 ~~~~~~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s-~p~~g~nAi~---~~a~~i~~l~~~~~  194 (347)
T PRK08652        129 FAERYRPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGA-CPESGVNAIE---KAFEMLEKLKELLK  194 (347)
T ss_pred             HHHhcCCCEEEEecCCCCceeeecccEEEEEEEEEeeecccC-CCCcCcCHHH---HHHHHHHHHHHHHH
Confidence                    2445555321                 2388955 7889999999   99999999987754

>PRK05469 peptidase T; Provisional

Probab=99.91  E-value=1.4e-23  Score=186.66  Aligned_cols=176  Identities=18%  Similarity=0.210  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCC--
Q psy17305         20 NKFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGND--   92 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~--   92 (223)
                      +.+++.|++||+|||+|.+.    +..+++.++++||+++|+++|++ ++.+..              +||++.+++.  
T Consensus         2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~--------------~~v~~~~~g~~~   67 (408)
T PRK05469          2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDEN--------------GYVMATLPANVD   67 (408)
T ss_pred             chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCC--------------eEEEEEecCCCC
Confidence            46889999999999999773    22246899999999999999996 554332              4899998543  


Q ss_pred             CCccEEEEEeccccCCCCCC---------------------CCCCCCCCceee----eCCeEEecCC----CCCchhHHH
Q psy17305         93 KAKHTVLVYGHLDVQPAEKE---------------------DGWNTEPFVLTL----KDEKLYGRGA----SDDKGPVLG  143 (223)
Q Consensus        93 ~~~~~ill~~H~DtVp~~~~---------------------~~w~~~P~~~~~----~~~~lyGrG~----~D~K~gv~~  143 (223)
                      ++.|+|+|+|||||||+...                     +.|.++||.+..    ..|++||||+    +|||+|+++
T Consensus        68 ~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa  147 (408)
T PRK05469         68 KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAE  147 (408)
T ss_pred             CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHH
Confidence            34689999999999987431                     224444444332    3478999998    999999999


Q ss_pred             HHHHHHHHHHccCCCceeeEEec------c--cc-----------eeeccCccc------------------CCCCcCCC
Q psy17305        144 WLHAIEAFQQTKKNVPVNIKEVT------G--KN-----------VLLLPMGAS------------------DDGAHSQN  186 (223)
Q Consensus       144 ~l~al~~l~~~~~~~~~~i~~~~------g--~~-----------~~~~~~g~~------------------~~~ahag~  186 (223)
                      +++|+++|++.+..++++|.+++      |  ..           .+.+..+..                  +.++|++.
T Consensus       148 ~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g~Ga~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~Ha~~  227 (408)
T PRK05469        148 IMTALEYLIAHPEIKHGDIRVAFTPDEEIGRGADKFDVEKFGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVHPGT  227 (408)
T ss_pred             HHHHHHHHHhCCCCCCCCEEEEEecccccCCCHHHhhhhhcCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCCCCC
Confidence            99999999887655666776443      2  11           111211111                  23899999


Q ss_pred             CccceecccchhhHHHHHHHHHHhhh
Q psy17305        187 EKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       187 ~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                      .|..|+||+.   .+++++..|..+.
T Consensus       228 ~p~~g~nAi~---~~~~~i~~l~~~~  250 (408)
T PRK05469        228 AKGKMVNALL---LAADFHAMLPADE  250 (408)
T ss_pred             CcccccCHHH---HHHHHHHhCCCCC
Confidence            9999999999   9999998887664

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=99.90  E-value=3.8e-23  Score=180.10  Aligned_cols=157  Identities=23%  Similarity=0.240  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQL-GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      ++++++|++|++|||+|+      .+.++++||.++|+++ |+++...  +             +|++++++.+. .++|
T Consensus         7 ~~~~~~l~~li~ips~s~------~e~~~~~~l~~~l~~~~~~~~~~~--~-------------~~~~~~~~~~~-~~~i   64 (352)
T PRK13007          7 ADLAELTAALVDIPSVSG------DEKALADAVEAALRALPHLEVIRH--G-------------NSVVARTDLGR-PSRV   64 (352)
T ss_pred             HHHHHHHHHHhcCCCCCc------hHHHHHHHHHHHHHhCcCceEEec--C-------------CeEEEEccCCC-CCeE
Confidence            679999999999999998      5778999999999996 8876542  2             48999985443 3589


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc----
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK----  168 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~----  168 (223)
                      +|+|||||||+++       ||.+.++||+|||||++|||+|++++|+|++.|.+    +++++.++      .|+    
T Consensus        65 ~l~~H~Dtvp~~~-------~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~----~~~~i~~~~~~~EE~~~~~~G  133 (352)
T PRK13007         65 VLAGHLDTVPVAD-------NLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE----PAHDLTLVFYDCEEVEAEANG  133 (352)
T ss_pred             EEEccccccCCCC-------CCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc----cCCCeEEEEEecccccCCccc
Confidence            9999999999862       45567889999999999999999999999999943    34444422      211    


Q ss_pred             ---------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 ---------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 ---------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                                     .++++++..                 .+..+|++ .|..|.||+.   .+++.+..|..+..
T Consensus       134 ~~~~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~~~~  206 (352)
T PRK13007        134 LGRLAREHPEWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSA-RSWLGENAIH---KAAPVLARLAAYEP  206 (352)
T ss_pred             HHHHHHhcccccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccC-CCccCcCHHH---HHHHHHHHHHHhcc
Confidence                           123333321                 02388988 6788999999   99999999887654

>TIGR01883 PepT-like peptidase T-like protein

Probab=99.90  E-value=3.9e-23  Score=180.72  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=129.1

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      ++++.|++|++|||+|+      .+.++++||.++|+.+|++++.+......  .+     ..|+++.+++..+.|+|+|
T Consensus         1 ~~~~~~~~l~~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~~~~--~~-----~~~~~~~~~g~~~~~~i~l   67 (361)
T TIGR01883         1 RLKKYFLELIQIDSESG------KEKAILTYLKKQITKLGIPVSLDEVPAEV--SN-----DNNLIARLPGTVKFDTIFF   67 (361)
T ss_pred             ChHHHHHHHeecCCCCC------cHHHHHHHHHHHHHHcCCEEEEecccccc--CC-----CceEEEEEeCCCCCCcEEE
Confidence            36789999999999997      57799999999999999998877643210  01     1699999854334589999


Q ss_pred             EeccccCCCCCCCCCCCCCCceeeeCCeEEecCC----CCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305        101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA----SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--  168 (223)
Q Consensus       101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~----~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--  168 (223)
                      .||+||||+++       ||.+.++++++||||+    .|||+|++++|.+++.|++.+ .++++|.+++      |.  
T Consensus        68 ~~H~D~V~~~~-------~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G  139 (361)
T TIGR01883        68 CGHMDTVPPGA-------GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIG  139 (361)
T ss_pred             EeeccccCCCC-------CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchh
Confidence            99999999852       4556788999999999    999999999999999998876 4566776443      21  


Q ss_pred             ------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 ------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 ------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                  .+++++++..                   +.++|++..|..|+||+.   .+++.+..|..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~---~~~~~i~~l~~~  210 (361)
T TIGR01883       140 MRLFDESKITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAIS---VARMAIHAMRLG  210 (361)
T ss_pred             HhHhChhhcCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHH---HHHHHHHhcccc
Confidence                        1233443211                   238999999999999999   999999888653

This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.

>PRK00466 acetyl-lysine deacetylase; Validated

Probab=99.90  E-value=1.4e-22  Score=176.52  Aligned_cols=153  Identities=23%  Similarity=0.289  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++||+|||+|+      ++.++++||.++|+++|+++++++.+              |++. .+    .++|+
T Consensus        10 ~~~~~~l~~lv~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~--------------~~~~-~g----~~~ll   64 (346)
T PRK00466         10 QKAKELLLDLLSIYTPSG------NETNATKFFEKISNELNLKLEILPDS--------------NSFI-LG----EGDIL   64 (346)
T ss_pred             HHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHcCCeEEEecCC--------------CcEe-cC----CCeEE
Confidence            578999999999999886      46789999999999999998877643              4443 22    36799


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCc--eeeEEeccc---------
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP--VNIKEVTGK---------  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~--~~i~~~~g~---------  168 (223)
                      |+||+||||+.         |.+.++||+|||||++|||+|++++|+|+++|++.+.++-  .+..|+.|+         
T Consensus        65 l~gH~DtVp~~---------~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~~G~~~l~~~  135 (346)
T PRK00466         65 LASHVDTVPGY---------IEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKGIKVMVSGLADEESTSIGAKELVSK  135 (346)
T ss_pred             EEeccccCCCC---------CCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCEEEEEEcCcccCCccHHHHHhc
Confidence            99999999852         5567899999999999999999999999999998874321  111233332         


Q ss_pred             -----ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        169 -----NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       169 -----~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                           .+++.++...                  +.++|++.. .  .||+.   .++..+..|..+.
T Consensus       136 ~~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p-~--~nAi~---~~~~~l~~l~~~~  196 (346)
T PRK00466        136 GFNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSA-K--SNLIV---DISKKIIEVYKQP  196 (346)
T ss_pred             CCCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCC-C--cCHHH---HHHHHHHHHHhcc
Confidence                 1334444311                  238898864 3  48999   8899888876653

>KOG2275|consensus

Probab=99.89  E-value=6.3e-22  Score=170.56  Aligned_cols=134  Identities=24%  Similarity=0.344  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ...+..++++++|||..++++++.   .+++++..+.+.+|..++..+...     ++    +.+++.+.|+++..++||
T Consensus        25 ~~~v~~f~eylRi~Tv~p~~dy~~---a~~~Fl~~~a~~l~l~~~~i~~~p-----~~----~~~l~T~~GS~P~L~sil   92 (420)
T KOG2275|consen   25 NISVTRFREYLRIPTVQPNPDYTI---ACADFLKKYAKSLGLTVQKIESEP-----GK----YVLLYTWLGSDPELPSIL   92 (420)
T ss_pred             chHHHHHHHHhhccccccCCCccH---HHHHHHHHHHHhcCCceeEEEecC-----ce----eEEEEEeeCCCCCcccee
Confidence            568899999999999988877432   889999999999999887766543     21    235555558888899999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |++|+||||+- .+.|+++||+... ++|.|||||++|||+-+++.|+|++.|+..|.++.++|.+.+
T Consensus        93 L~SH~DVVP~f-~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsf  159 (420)
T KOG2275|consen   93 LNSHTDVVPVF-REKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSF  159 (420)
T ss_pred             eeccccccCCC-cccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEe
Confidence            99999999997 4689999999886 789999999999999999999999999999999999986443

>TIGR01891 amidohydrolases amidohydrolase

Probab=99.88  E-value=6.7e-22  Score=173.30  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=123.0

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      ++++++|++|||+|+      ++.++++||.++|+++|+++++....            ..|+++++++..+.|+|+|+|
T Consensus         2 ~~~~~~L~~ips~s~------~E~~~a~~l~~~l~~~g~~~~~~~~~------------~~~vva~~~~~~~~~~i~l~g   63 (363)
T TIGR01891         2 TDIRRHLHEHPELSF------EEFKTSSLIAEALESLGIEVRRGVGG------------ATGVVATIGGGKPGPVVALRA   63 (363)
T ss_pred             hHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCceEecCCC------------CcEEEEEEeCCCCCCEEEEEe
Confidence            578999999999998      57899999999999999998763211            159999986543458999999


Q ss_pred             ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------c--c------
Q psy17305        103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------G--K------  168 (223)
Q Consensus       103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g--~------  168 (223)
                      ||||||+++   |..+||.+. ++|++||||+   ++++++++.|+..|++.+..++.+|.+++      +  .      
T Consensus        64 H~DtVp~~~---~~~~pf~~~-~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~  136 (363)
T TIGR01891        64 DMDALPIQE---QTDLPYKST-NPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIED  136 (363)
T ss_pred             ccCCCCccc---ccCCCcccC-CCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHC
Confidence            999999863   667999875 7899999997   47888999999888886655555665332      1  1      


Q ss_pred             -------ceeeccC-------------c------------ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        169 -------NVLLLPM-------------G------------ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       169 -------~~~~~~~-------------g------------~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                             .++++++             +            +.+.++|+ ..|..|+||+.   .+++++.++..+.
T Consensus       137 ~~~~~~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Ha-s~p~~g~nAi~---~~~~~i~~l~~~~  208 (363)
T TIGR01891       137 GVLDDVDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHA-ARPHLGRDALD---AAAQLVVALQQIV  208 (363)
T ss_pred             CCCCCcCEEEEECCCCCCCCeEEEECCCcceeecceEEEEEEeecccc-cCcccccCHHH---HHHHHHHHHHHHh
Confidence                   1222222             0            01348899 78899999999   9999999988763

This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.

>TIGR01882 peptidase-T peptidase T

Probab=99.87  E-value=1.9e-21  Score=173.22  Aligned_cols=171  Identities=14%  Similarity=0.183  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhhccCCCCCCCC----CchHHHHHHHHHHHHHHhcCCc-EEEEe-cCCCCCCCCCCCCCCcEEEEEcCCCC
Q psy17305         20 NKFIENLKEAVAIESVSSSVQ----HRPQTINMIHYFADKLKQLGAT-VEICD-IGNQTLPNGESIKYPPVILGNLGNDK   93 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~----~~~~~~~~~~~l~~~l~~~G~~-~~~~~-~~~~~~~~g~~~~~~~nl~a~~~~~~   93 (223)
                      +++++.|.+|++|+|+|+...    .++++.+++++|+++|+++|++ ++.++ .              .||++++++..
T Consensus         3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~--------------gnv~~~~~~~~   68 (410)
T TIGR01882         3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKN--------------GYVIATIPSNT   68 (410)
T ss_pred             hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCc--------------eEEEEEecCCC
Confidence            578999999999999997322    2333447999999999999997 88775 3              39999975433


Q ss_pred             C--ccEEEEEeccccCCC-CCC------------------------CCCCCCCCce------e-eeCCeEEecCCCCCch
Q psy17305         94 A--KHTVLVYGHLDVQPA-EKE------------------------DGWNTEPFVL------T-LKDEKLYGRGASDDKG  139 (223)
Q Consensus        94 ~--~~~ill~~H~DtVp~-~~~------------------------~~w~~~P~~~------~-~~~~~lyGrG~~D~K~  139 (223)
                      +  .|+|+|.+||||||. +..                        ..|.++||..      . .+|+.+||   +|||+
T Consensus        69 ~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G---~D~Kg  145 (410)
T TIGR01882        69 DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG---ADDKA  145 (410)
T ss_pred             CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec---ccCHH
Confidence            3  389999999999984 321                        1588888873      3 67789999   99999


Q ss_pred             hHHHHHHHHHHHHHccCCCceeeEEec------cc--c-----------eeeccC---cc---------------cCCCC
Q psy17305        140 PVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--N-----------VLLLPM---GA---------------SDDGA  182 (223)
Q Consensus       140 gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--~-----------~~~~~~---g~---------------~~~~a  182 (223)
                      |+|++|.|++.|++.+..++++|.+++      |.  .           .+++..   |.               .+.++
T Consensus       146 glAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g~Ga~~l~~~~~~~~~~~~i~gep~g~i~~~~~g~~~~~I~v~Gk~a  225 (410)
T TIGR01882       146 GIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIGRGAHKFDVKDFNADFAYTVDGGPLGELEYETFSAAAAKITIQGNNV  225 (410)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCCcCcchhhhhhcCccEEEEeCCCCCCeEEEccccceEEEEEEEEEec
Confidence            999999999999986333455665443      21  1           111111   10               01389


Q ss_pred             cCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        183 HSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       183 hag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                      |++..+..|+||+.   .+..++..+..
T Consensus       226 Ha~~~~~~g~nAi~---~a~~~~~~l~~  250 (410)
T TIGR01882       226 HPGTAKGKMINAAQ---IAIDLHNLLPE  250 (410)
T ss_pred             CcccChHHHHHHHH---HHHHHHHhcCC
Confidence            99988889999999   77777666544

This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase

Probab=99.86  E-value=7.7e-21  Score=164.92  Aligned_cols=101  Identities=28%  Similarity=0.437  Sum_probs=84.7

Q ss_pred             HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEecc
Q psy17305         25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHL  104 (223)
Q Consensus        25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~  104 (223)
                      +|++|++|||+|+      .+.++++||+++|+++|+++.....              .|+++..++  +.|+|+|+|||
T Consensus         2 ~l~~lv~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~--------------~~~~~~~~~--~~~~i~~~~H~   59 (336)
T TIGR01902         2 LLKDLLEIYSPSG------KEANAAKFLEEISKDLGLKLIIDDA--------------GNFILGKGD--GHKKILLAGHV   59 (336)
T ss_pred             hHHHHhcCCCCCc------chHHHHHHHHHHHHHcCCEEEECCC--------------CcEEEEeCC--CCceEEEEccc
Confidence            6899999999997      4679999999999999998843221              377776643  36899999999


Q ss_pred             ccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305        105 DVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK  156 (223)
Q Consensus       105 DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~  156 (223)
                      ||||+.         |.+.++||++||||++|||+|++++|+|+++|++.+.
T Consensus        60 D~vp~~---------~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~~  102 (336)
T TIGR01902        60 DTVPGY---------IPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEKGI  102 (336)
T ss_pred             cccCCC---------cccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhCCC
Confidence            999852         4457899999999999999999999999999987654

This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.

>PLN02693 IAA-amino acid hydrolase

Probab=99.85  E-value=7.2e-20  Score=164.17  Aligned_cols=173  Identities=13%  Similarity=0.216  Sum_probs=132.2

Q ss_pred             HHHHHHHHh--cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305          9 AEISEYVES--NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL   86 (223)
Q Consensus         9 ~~~~~~i~~--~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~   86 (223)
                      .++++.+++  ..++++++.++|.++|+.|+      ++.+.+++|.++|+++|++++. ..+            ..|++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~------~E~~ta~~i~~~L~~~G~~~~~-~~~------------~~~vi   94 (437)
T PLN02693         34 INLLELAKSPEVFDWMVRIRRKIHENPELGY------EEFETSKLIRSELDLIGIKYRY-PVA------------ITGII   94 (437)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhCCCCCC------chHHHHHHHHHHHHHCCCeeEe-cCC------------CcEEE
Confidence            344444443  44678999999999999999      6889999999999999999764 222            16999


Q ss_pred             EEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         87 GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        87 a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +.++++ ++|+|+|.|||||||.++...|.++||    .+|++||+|   +|+++++++.|+++|++.+..++++|.+++
T Consensus        95 a~~g~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~----~~G~~hacG---hkg~~A~~l~Aa~~L~~~~~~~~g~V~~if  166 (437)
T PLN02693         95 GYIGTG-EPPFVALRADMDALPIQEAVEWEHKSK----IPGKMHACG---HDGHVAMLLGAAKILQEHRHHLQGTVVLIF  166 (437)
T ss_pred             EEECCC-CCCEEEEEeecCCCcCCCCCCCCCCCC----CCCCEECCc---chHHHHHHHHHHHHHHhCcccCCceEEEEE
Confidence            998543 358999999999999976667999998    368999765   699999999999999988766677776443


Q ss_pred             --------cc------------ceeec---cC----c------------c-------cCCCCcCCCCccceecccchhhH
Q psy17305        167 --------GK------------NVLLL---PM----G------------A-------SDDGAHSQNEKIDVRNYIEGTKL  200 (223)
Q Consensus       167 --------g~------------~~~~~---~~----g------------~-------~~~~ahag~~~~~g~~ai~g~~~  200 (223)
                              |.            ++++.   ++    |            .       .+.++|++ .|..|+||+.   +
T Consensus       167 ~pdEE~~~Ga~~~i~~g~~~~~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa-~P~~G~nAI~---~  242 (437)
T PLN02693        167 QPAEEGLSGAKKMREEGALKNVEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAA-IPQHTIDPVV---A  242 (437)
T ss_pred             EEcccchhhHHHHHHCCCCCCCCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCC-CCCCCcCHHH---H
Confidence                    11            12221   11    1            0       12488988 5999999999   9


Q ss_pred             HHHHHHHHHhhh
Q psy17305        201 LAAYLYEISKVT  212 (223)
Q Consensus       201 ~a~~~~~l~~l~  212 (223)
                      +++.+.+|+.+.
T Consensus       243 aa~~i~~l~~~~  254 (437)
T PLN02693        243 ASSIVLSLQQLV  254 (437)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998874

>PLN02280 IAA-amino acid hydrolase

Probab=99.83  E-value=1.9e-19  Score=162.81  Aligned_cols=164  Identities=11%  Similarity=0.102  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .+.+.++.+.+.++|++++      ++.++++||.++|+++|++++.....             .|++++++... .|+|
T Consensus        96 ~~~l~~l~r~lh~~PEls~------~E~~t~~~i~~~L~~~G~~~~~~~~~-------------~~vva~~g~~~-~~~I  155 (478)
T PLN02280         96 VAWLKSVRRKIHENPELAF------EEYKTSELVRSELDRMGIMYRYPLAK-------------TGIRAWIGTGG-PPFV  155 (478)
T ss_pred             HHHHHHHHHHHhcCCCCCC------cHHHHHHHHHHHHHHCCCeEEecCCC-------------CEEEEEECCCC-CCEE
Confidence            3455556666677777776      67899999999999999998764221             59999995432 4899


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--c-
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--N-  169 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--~-  169 (223)
                      +|.|||||||.++...|.++|    +++|++||||.   |+++++++.|++.|++.+..++++|.+++      |.  . 
T Consensus       156 ~l~gh~DaVP~~e~~~w~~~p----~~~G~~h~cGh---d~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~  228 (478)
T PLN02280        156 AVRADMDALPIQEAVEWEHKS----KVAGKMHACGH---DAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKR  228 (478)
T ss_pred             EEEEecCCCcccCCCCCCCCC----CCCCeEEeCCC---cHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHH
Confidence            999999999997666799888    67899999983   66999999999999988767777776443      21  0 


Q ss_pred             ------------eeec-----cC-c---c----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        170 ------------VLLL-----PM-G---A----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       170 ------------~~~~-----~~-g---~----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                                  ++.+     ++ +   .                .+.++|++ .|+.|+||+.   ++++.+.+++.+.
T Consensus       229 li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas-~P~~G~NAI~---~aa~li~~l~~l~  304 (478)
T PLN02280        229 MIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAG-SPHHSVDLIL---AASAAVISLQGIV  304 (478)
T ss_pred             HHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcC-CcccCcCHHH---HHHHHHHHHHHHH
Confidence                        1110     11 1   0                12488977 6999999999   9999999888775


Q ss_pred             h
Q psy17305        213 Q  213 (223)
Q Consensus       213 ~  213 (223)
                      .
T Consensus       305 ~  305 (478)
T PLN02280        305 S  305 (478)
T ss_pred             h
Confidence            3

>PRK12891 allantoate amidohydrolase; Reviewed

Probab=99.79  E-value=1.5e-18  Score=154.72  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhccCC-CCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCC
Q psy17305         20 NKFIENLKEAVAIES-VSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKA   94 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s-~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~   94 (223)
                      .++++.|.+|-+|.+ +.+   ...+++++.++++||.++|+++|++++++..              .|+++++.+ +++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~~--------------gNl~a~~~g~~~~   75 (414)
T PRK12891         10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDAM--------------GNLFARRAGRDPD   75 (414)
T ss_pred             HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECCC--------------CCEEEEecCCCCC
Confidence            467788888888742 211   2235778999999999999999999998754              399999854 334


Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      .|+|+|+||+||||++                      |.+|||+|++++++|+++|++.+.+++++|.++
T Consensus        76 ~~~l~~~~H~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~  124 (414)
T PRK12891         76 AAPVMTGSHADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVV  124 (414)
T ss_pred             CCeEEEEecccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            5899999999999997                      678999999999999999999998887777543

>TIGR03176 AllC allantoate amidohydrolase

Probab=99.78  E-value=2.3e-18  Score=153.25  Aligned_cols=134  Identities=14%  Similarity=0.192  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhhccCC-CCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-CCCC
Q psy17305         20 NKFIENLKEAVAIES-VSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-NDKA   94 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s-~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~~~~   94 (223)
                      +++.+.|.+|-+|.+ +.+   +..+++++.++++||++||+++|++++.+..+              |+++++. .+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~g--------------N~~~~~~g~~~~   68 (406)
T TIGR03176         3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVG--------------NLYGRLVGTEFP   68 (406)
T ss_pred             HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCC--------------cEEEEecCCCCC
Confidence            456677777777732 211   23368889999999999999999999999876              9999984 4556


Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeecc
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLP  174 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~  174 (223)
                      .|+|++.|||||||.+                      |.+|++.||++.|+|++.|++.++.++++|.+++        
T Consensus        69 ~~~i~~gsHlDtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~--------  118 (406)
T TIGR03176        69 EETILTGSHIDTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLS--------  118 (406)
T ss_pred             CCeEEEeccccCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEE--------
Confidence            7999999999999998                      8999999999999999999999999999999888        


Q ss_pred             CcccCCCCcCCCCccceecccchhh
Q psy17305        175 MGASDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       175 ~g~~~~~ahag~~~~~g~~ai~g~~  199 (223)
                        |.+|++.+|+....|+.++.|..
T Consensus       119 --~~~EEg~rf~~~~~Gs~~~~g~~  141 (406)
T TIGR03176       119 --MAEEEGSRFPYVFWGSKNIFGLA  141 (406)
T ss_pred             --eccccCccCCcccccHHHHhCCC
Confidence              88999999999999999999743

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.

>PRK12892 allantoate amidohydrolase; Reviewed

Probab=99.78  E-value=1.9e-18  Score=153.80  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhhccCCCCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCc
Q psy17305         19 KNKFIENLKEAVAIESVSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAK   95 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~   95 (223)
                      .+++++.|.+|++|+|..+   .+..++++.++++||.++|+++|++++++..              .|+++++++..+.
T Consensus         9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~nl~a~~~g~~~~   74 (412)
T PRK12892          9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRIDGI--------------GNVFGRLPGPGPG   74 (412)
T ss_pred             HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEecCCCCC
Confidence            4689999999999998111   1223457889999999999999999887543              4999998543334


Q ss_pred             cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      |+|+|+||+||||++                      |..|+|+|++++|+|+++|++.+..++++|.+
T Consensus        75 ~~l~l~gH~DtVp~~----------------------g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~  121 (412)
T PRK12892         75 PALLVGSHLDSQNLG----------------------GRYDGALGVVAGLEAARALNEHGIATRHPLDV  121 (412)
T ss_pred             CeEEEEccccCCCCC----------------------CcccchHHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence            899999999999986                      44677889999999999999998877777753

>PRK09290 allantoate amidohydrolase; Reviewed

Probab=99.78  E-value=2.8e-18  Score=152.90  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhhcc-CCCCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-C
Q psy17305         19 KNKFIENLKEAVAI-ESVSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-K   93 (223)
Q Consensus        19 ~~~~i~~l~~lv~i-~s~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~   93 (223)
                      .+++++.|++|++| ++...   .+..++++.++++||.++|+++|++++++..              .||++++++. +
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~~~--------------~nl~a~~~g~~~   71 (413)
T PRK09290          6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVDAV--------------GNLFGRLEGRDP   71 (413)
T ss_pred             HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEecCCCC
Confidence            47899999999999 32221   1123557899999999999999999887432              4999998543 2


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      ..|+|+|+||+||||++                      |..|||+|++++++|+++|++.+.+++++|.
T Consensus        72 ~~~~l~l~gH~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~  119 (413)
T PRK09290         72 DAPAVLTGSHLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIE  119 (413)
T ss_pred             CCCEEEEecCccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeE
Confidence            35899999999999986                      5679999999999999999998877666665

>PRK12893 allantoate amidohydrolase; Reviewed

Probab=99.77  E-value=7.5e-18  Score=149.99  Aligned_cols=111  Identities=21%  Similarity=0.256  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CC
Q psy17305         19 KNKFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DK   93 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~   93 (223)
                      .++++++|++|++|+|.+...    ..++++.++++||.++|+++|++++++..              .|+++++.+ ++
T Consensus         9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~n~~a~~~g~~~   74 (412)
T PRK12893          9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVDAI--------------GNLFGRRAGTDP   74 (412)
T ss_pred             HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEeCCCCC
Confidence            478999999999999854211    13567889999999999999999887432              389999844 32


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      +.|+|+|.||+||||++                      |..|+|+|++++|.|+++|++.+..++++|.++
T Consensus        75 ~~~~l~l~~H~DtVp~~----------------------g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~  124 (412)
T PRK12893         75 DAPPVLIGSHLDTQPTG----------------------GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVV  124 (412)
T ss_pred             CCCEEEEEecccCCCCC----------------------CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            35899999999999986                      457889999999999999999887777777543

>PRK12890 allantoate amidohydrolase; Reviewed

Probab=99.77  E-value=8.6e-18  Score=149.78  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhccCCCC---CCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCc
Q psy17305         20 NKFIENLKEAVAIESVS---SSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAK   95 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s---~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~   95 (223)
                      +++++.|.+|.+||...   .++..++++.++++||.++|+++|++++++..              .|+++++++. ++.
T Consensus         9 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~nlia~~~g~~~~~   74 (414)
T PRK12890          9 ERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRDAA--------------GNLFGRLPGRDPDL   74 (414)
T ss_pred             HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEcCC--------------CcEEEEeCCCCCCC
Confidence            57888999999888321   12233457899999999999999999987642              4999999543 346


Q ss_pred             cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      |+|+|+|||||||++                      |..|||+|++++|+|+++|++.+..++++|.+
T Consensus        75 ~~l~~~~H~DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~  121 (414)
T PRK12890         75 PPLMTGSHLDTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEV  121 (414)
T ss_pred             CEEEEeCcccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence            899999999999986                      67899999999999999999988777777754

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional

Probab=99.75  E-value=1.3e-17  Score=154.57  Aligned_cols=134  Identities=11%  Similarity=0.147  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhhccCCCCCCC-------CCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305         19 KNKFIENLKEAVAIESVSSSV-------QHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLPNGESIKYPPVILGNLG   90 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~-------~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~~g~~~~~~~nl~a~~~   90 (223)
                      .+++.+.|.+|-+|+.+++.+       .+++++.++++||.+||+++|+ +++.+..+              |+++++.
T Consensus       180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~G--------------Nl~~~~~  245 (591)
T PRK13590        180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAVG--------------NVVGRYK  245 (591)
T ss_pred             HHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCCC--------------CEEEEec
Confidence            367788888898886544311       2588899999999999999999 88888775              9999984


Q ss_pred             C-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccc
Q psy17305         91 N-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKN  169 (223)
Q Consensus        91 ~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~  169 (223)
                      + +++.|+|++.|||||||.+                      |.+|+++||+++|++++.|++.++.++++|.++.   
T Consensus       246 g~~~~~~~v~~gsHlDTV~~g----------------------G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~---  300 (591)
T PRK13590        246 GSTPQAKRLLTGSHYDTVRNG----------------------GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVG---  300 (591)
T ss_pred             CCCCCCCeEEEecccccCCCC----------------------CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEE---
Confidence            3 4446899999999999997                      8899999999999999999999998888998887   


Q ss_pred             eeeccCcccCCCCcCCCCccceecccchh
Q psy17305        170 VLLLPMGASDDGAHSQNEKIDVRNYIEGT  198 (223)
Q Consensus       170 ~~~~~~g~~~~~ahag~~~~~g~~ai~g~  198 (223)
                             +.+|++.+|+....|+.++.|.
T Consensus       301 -------~~~EEg~rF~~~~~GS~~~~G~  322 (591)
T PRK13590        301 -------FAEEEGQRYKATFLGSGALIGD  322 (591)
T ss_pred             -------ecCCccccCCccccchHHHhCC
Confidence                   8899998899889999988873

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional

Probab=99.75  E-value=1.5e-17  Score=154.15  Aligned_cols=133  Identities=12%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhccCCCCCCC-------CCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305         19 KNKFIENLKEAVAIESVSSSV-------QHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLG   90 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~-------~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~   90 (223)
                      .+++.+.|.+|.+|+.++..+       .++++..++++||.+||+++|++ ++.+..+              ||++++.
T Consensus       180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~g--------------Nv~~~~~  245 (591)
T PRK13799        180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVG--------------NVVGRYK  245 (591)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCC--------------CEEEEcC
Confidence            467888999999986432222       25888999999999999999998 9999886              9999984


Q ss_pred             -CCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccc
Q psy17305         91 -NDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKN  169 (223)
Q Consensus        91 -~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~  169 (223)
                       .+++.|+|++.||+||||.+                      |.+|+-.||+++|++++.|++.+++++++|.++.   
T Consensus       246 g~~~~~p~v~~gSHlDTV~~g----------------------G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~---  300 (591)
T PRK13799        246 AADDDAKTLITGSHYDTVRNG----------------------GKYDGREGIFLAIACVKELHEQGERLPFHFEVIA---  300 (591)
T ss_pred             CCCCCCCeEEEeccccccCCC----------------------CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEE---
Confidence             44567999999999999997                      8889999999999999999999999999999887   


Q ss_pred             eeeccCcccCCCCcCCCCccceecccch
Q psy17305        170 VLLLPMGASDDGAHSQNEKIDVRNYIEG  197 (223)
Q Consensus       170 ~~~~~~g~~~~~ahag~~~~~g~~ai~g  197 (223)
                             |.+|++.+|+....|+.++.|
T Consensus       301 -------~~~EEg~rF~~~~~GS~~~~G  321 (591)
T PRK13799        301 -------FAEEEGQRFKATFLGSGALIG  321 (591)
T ss_pred             -------ecCCCccCCCccccchHHHhC
Confidence                   889999999999999999987

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.66  E-value=2.1e-16  Score=125.54  Aligned_cols=66  Identities=39%  Similarity=0.806  Sum_probs=60.7

Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|++|||||| . .++|.++||.+.+++|++||||+.|||++++++++|++.|++.+..++.+|.+++
T Consensus         1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~   66 (189)
T PF01546_consen    1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLF   66 (189)
T ss_dssp             EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEE
T ss_pred             CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccc
Confidence            6899999999 5 6789999999999999999999999999999999999999998888999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family

Probab=99.64  E-value=3e-15  Score=132.97  Aligned_cols=130  Identities=15%  Similarity=0.163  Sum_probs=99.1

Q ss_pred             HHHHHHHhhccCCCC-C---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCcc
Q psy17305         22 FIENLKEAVAIESVS-S---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKH   96 (223)
Q Consensus        22 ~i~~l~~lv~i~s~s-~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~   96 (223)
                      +.+.|..+-++.+.. +   ....++++.++++||+++|+++|+++++++.              .||++++++. ++.|
T Consensus         3 ~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~~--------------~nl~a~~~g~~~~~~   68 (401)
T TIGR01879         3 LWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDEV--------------GNLIGRKEGTEPPLE   68 (401)
T ss_pred             HHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecC--------------CcEEEEecCCCCCCC
Confidence            455666666653211 1   1224678999999999999999999988754              3999999643 3458


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeeccCc
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMG  176 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~~g  176 (223)
                      +|+|+||+||||++                      |..|++.|++++|+|+++|++.++.++++|.+++          
T Consensus        69 ~l~~~~H~DtV~~g----------------------g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~----------  116 (401)
T TIGR01879        69 VVLSGSHIDTVVNG----------------------GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVA----------  116 (401)
T ss_pred             EEEEecccccCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEE----------
Confidence            99999999999986                      5678889999999999999999998999998877          


Q ss_pred             ccCCCCcCCCCccceecccch
Q psy17305        177 ASDDGAHSQNEKIDVRNYIEG  197 (223)
Q Consensus       177 ~~~~~ahag~~~~~g~~ai~g  197 (223)
                      +.+|++-+|.....|+.++.|
T Consensus       117 ~~dEE~~~f~~~~~Gs~~~~~  137 (401)
T TIGR01879       117 FTEEEGSRFPYGMWGSRNMVG  137 (401)
T ss_pred             EeCCcCcCcccccccHHHHhc
Confidence            677776555555566555543

Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]

Probab=99.56  E-value=2e-14  Score=124.97  Aligned_cols=138  Identities=20%  Similarity=0.222  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCC-C--CCCCCCCcEEEEEcCCCCC
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLP-N--GESIKYPPVILGNLGNDKA   94 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~-~--g~~~~~~~nl~a~~~~~~~   94 (223)
                      .+++.++..+||+.||+++.+    ++...+++|...|.++.+ +-+-.+.....+. +  |+     .||+|...++.+
T Consensus         7 ~e~v~~lt~~LV~~~SvtgT~----GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR-----~nv~AlVrg~~~   77 (553)
T COG4187           7 SERVRALTLSLVSWPSVTGTP----GEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGR-----RNVFALVRGGTS   77 (553)
T ss_pred             HHHHHHHHHHHeeccccCCCc----ccccHHHHHHHHHhcCchhhhChHhhcccCCCCCcccc-----ceeEEEEecCCC
Confidence            478889999999999999865    588899999999998875 2222222211111 1  43     699999866556


Q ss_pred             ccEEEEEeccccCCCCCCCC---CCCCCCc----------e--------eeeCCeEEecCCCCCchhHHHHHHHHHHHHH
Q psy17305         95 KHTVLVYGHLDVQPAEKEDG---WNTEPFV----------L--------TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ  153 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~---w~~~P~~----------~--------~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~  153 (223)
                      +.+|++.||+|||...+...   .+.+|..          .        -..|+||+|||+.|||+|+++.|.+|+.+.+
T Consensus        78 k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~  157 (553)
T COG4187          78 KRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAA  157 (553)
T ss_pred             CceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhh
Confidence            78999999999997655333   3345511          0        0247999999999999999999999999988


Q ss_pred             ccCCCceeeEEec
Q psy17305        154 TKKNVPVNIKEVT  166 (223)
Q Consensus       154 ~~~~~~~~i~~~~  166 (223)
                      . ...++|+.++.
T Consensus       158 ~-~~~~GNlLf~a  169 (553)
T COG4187         158 R-TDRQGNLLFMA  169 (553)
T ss_pred             C-CCCCCcEEEEe
Confidence            7 46788987664

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family

Probab=99.53  E-value=1.5e-13  Score=119.52  Aligned_cols=125  Identities=27%  Similarity=0.363  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      +.++++|++|+++||+|+      .+.++++++.++|+++|++++.+..+              |+++.+.+..+.++|+
T Consensus         3 ~~~~~lLk~Lv~~~s~SG------~E~~V~~~l~~~l~~~g~ev~~D~~G--------------nlia~~~g~~~~~~v~   62 (343)
T TIGR03106         3 DYLTETLLALLAIPSPTG------FTDAVVRYVAERLEDLGIEYELTRRG--------------AIRATLPGREATPARA   62 (343)
T ss_pred             HHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHcCCeEEECCCe--------------EEEEEECCCCCCCeEE
Confidence            568899999999999998      57899999999999999998876543              9999874433357999


Q ss_pred             EEeccccCCCCC-------------------------------CCC------C--CC-------------CCCc---e--
Q psy17305        100 VYGHLDVQPAEK-------------------------------EDG------W--NT-------------EPFV---L--  122 (223)
Q Consensus       100 l~~H~DtVp~~~-------------------------------~~~------w--~~-------------~P~~---~--  122 (223)
                      |.+|||||.---                               .++      +  ..             .++.   .  
T Consensus        63 l~aHmDevG~~V~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~i  142 (343)
T TIGR03106        63 VVTHLDTLGAMVRELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRV  142 (343)
T ss_pred             EEEeeccccceeeEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEE
Confidence            999999984310                               011      1  00             1111   0  


Q ss_pred             ----------------------------eeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        123 ----------------------------TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       123 ----------------------------~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                                                  ...++++|||+ .|||+|++++++++++|++.+.+++.++.++
T Consensus       143 DiG~~s~ee~~~lGV~~Gd~v~~~~~~~~~~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~  212 (343)
T TIGR03106       143 DARASCRADLVRLGISVGDFVAFDPQPEFLANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPL  212 (343)
T ss_pred             ECCcCCHHHHHHcCCCCCCEEEECCccEEecCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEE
Confidence                                        12478999998 9999999999999999998876666666544

This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional

Probab=99.51  E-value=3.6e-13  Score=116.31  Aligned_cols=114  Identities=15%  Similarity=0.223  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHHHHHhcCCcEEEEecCCC---CCCCCCCC---CCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCC
Q psy17305         42 RPQTINMIHYFADKLKQLGATVEICDIGNQ---TLPNGESI---KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGW  115 (223)
Q Consensus        42 ~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~---~~~~g~~~---~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w  115 (223)
                      ++++.++++||+++|+++|++++.+.....   ....++..   ....||++.+.+. ..++|+|.+|||||++....  
T Consensus        51 S~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~-~~~~Ill~AH~DTV~p~~~~--  127 (346)
T PRK10199         51 SPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGK-APQQIIIMAHLDTYAPQSDA--  127 (346)
T ss_pred             CHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCC-CCCeEEEEEEcCcCCCCCCC--
Confidence            447889999999999999999876553210   00011100   0125899998553 35789999999999753211  


Q ss_pred             CCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        116 NTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       116 ~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                       ..++    ..+.+|++|+.|||+|++++|++++.|++.+  ++.+|.++
T Consensus       128 -~~~~----~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv  170 (346)
T PRK10199        128 -DVDA----NLGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFV  170 (346)
T ss_pred             -cccc----CCCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEE
Confidence             1122    1122899999999999999999999998654  44566644

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]

Probab=99.33  E-value=4.8e-11  Score=105.27  Aligned_cols=175  Identities=19%  Similarity=0.249  Sum_probs=130.9

Q ss_pred             HHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305         11 ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG   90 (223)
Q Consensus        11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~   90 (223)
                      +.+++ ...++++++-+.|-++|..++      +|.+.+.|+.+.|+++|+++......            ...+++.++
T Consensus         4 ~~~~~-~~~~~l~~~rr~lH~~PEL~f------~E~~Ta~~i~~~L~~~g~~~~~~~~~------------~TGvva~~~   64 (392)
T COG1473           4 ILDEI-ELKDELIEWRRDLHEHPELGF------EEYRTAAYIAEKLEELGFEVVEVGGG------------KTGVVATLK   64 (392)
T ss_pred             HHHHH-hhhHHHHHHHHHHhhCCccch------hHHHHHHHHHHHHHHcCCeeEeccCC------------ceEEEEEEc
Confidence            33444 556889999999999999999      78899999999999999993332221            158999997


Q ss_pred             CCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----
Q psy17305         91 NDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----  166 (223)
Q Consensus        91 ~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----  166 (223)
                      ++.++|+|.|.+-||.+|.....   .-||.. ...|+++++|.   -+..++.|.+++.|.+..-.++++|++++    
T Consensus        65 ~g~~g~tIalRAD~DALPi~E~t---~~~~~S-~~~G~mHACGH---D~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAE  137 (392)
T COG1473          65 GGKPGPTIALRADMDALPIQEET---GLPFAS-KNPGVMHACGH---DGHTAILLGAALALAEHKDNLPGTVRLIFQPAE  137 (392)
T ss_pred             CCCCCCEEEEEeecccCcccccc---CCCccc-CCCCCcccCCc---hHHHHHHHHHHHHHHhhhhhCCcEEEEEecccc
Confidence            66556799999999999985332   357764 55669999987   46677788888899887667889998664    


Q ss_pred             --c-cceeeccCcc-c---------------------------------------CCCCcCCCCccceecccchhhHHHH
Q psy17305        167 --G-KNVLLLPMGA-S---------------------------------------DDGAHSQNEKIDVRNYIEGTKLLAA  203 (223)
Q Consensus       167 --g-~~~~~~~~g~-~---------------------------------------~~~ahag~~~~~g~~ai~g~~~~a~  203 (223)
                        + ....+++.|. .                                       +.++|+ ..|..+++++.   .++.
T Consensus       138 E~~~Ga~~mi~~G~~~~~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~-a~Ph~~~d~i~---aa~~  213 (392)
T COG1473         138 EGGGGAKAMIEDGVFDDFVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHA-AAPHLGIDALV---AAAQ  213 (392)
T ss_pred             cccccHHHHHhcCCccccccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCccc-CCcccccCHHH---HHHH
Confidence              1 2222222221 0                                       138998 99999999999   8888


Q ss_pred             HHHHHHhhhhhh
Q psy17305        204 YLYEISKVTQAE  215 (223)
Q Consensus       204 ~~~~l~~l~~~~  215 (223)
                      .+..|+.+....
T Consensus       214 ~v~~lq~ivsr~  225 (392)
T COG1473         214 LVTALQTIVSRN  225 (392)
T ss_pred             HHHHHHHHHhcc
Confidence            888888776543

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]

Probab=99.14  E-value=6.1e-10  Score=96.63  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      +.++++|++|++++++|+      .++++.+++++.|++++.+++++..|              ||++++++..+.+.|+
T Consensus         2 ~~~~~~LkeL~~~~gpsG------~E~eVr~~~~~el~~~~~ev~~D~lG--------------nlia~~~g~~g~~~im   61 (355)
T COG1363           2 EELLELLKELLEAPGPSG------YEEEVRDVLKEELEPLGDEVEVDRLG--------------NLIAKKGGKNGPPKVM   61 (355)
T ss_pred             hHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHHHhCCceEEcCCC--------------cEEEEecCCCCCccEE
Confidence            457889999999999999      57789999999999999999998876              9999997633345699


Q ss_pred             EEeccccC
Q psy17305        100 VYGHLDVQ  107 (223)
Q Consensus       100 l~~H~DtV  107 (223)
                      +.+|||+|
T Consensus        62 i~AHmDEi   69 (355)
T COG1363          62 IAAHMDEI   69 (355)
T ss_pred             EEeeccee
Confidence            99999997

>TIGR03107 glu_aminopep glutamyl aminopeptidase

Probab=98.99  E-value=3.2e-09  Score=92.63  Aligned_cols=65  Identities=22%  Similarity=0.314  Sum_probs=55.8

Q ss_pred             HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCccEEEEEe
Q psy17305         24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKHTVLVYG  102 (223)
Q Consensus        24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~~ill~~  102 (223)
                      ++|++|+++|++|+      .|++++++++++|++++.+++.+..+              |+++.+++. .+.|+|+|.+
T Consensus         2 ~~L~~L~~~~gpSG------~E~~v~~~i~~~l~~~~~~v~~D~~G--------------Nvia~~~g~~~~~~~vml~A   61 (350)
T TIGR03107         2 NKIKEVTELQGTSG------FEHPIRDYLRQDITPLVDQVETDGLG--------------GIFGIKESQVENAPRVMVAA   61 (350)
T ss_pred             hHHHHHHhCCCCCC------CcHHHHHHHHHHHHhhCCEEEECCCC--------------CEEEEecCCCCCCCEEEEEe
Confidence            46999999999999      57899999999999999999888775              999987542 3357999999


Q ss_pred             ccccCC
Q psy17305        103 HLDVQP  108 (223)
Q Consensus       103 H~DtVp  108 (223)
                      |||+|+
T Consensus        62 HmDeVG   67 (350)
T TIGR03107        62 HMDEVG   67 (350)
T ss_pred             cccEeC
Confidence            999983

This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes

>PRK09864 putative peptidase; Provisional

Probab=98.92  E-value=8.7e-09  Score=89.98  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      +++|++|+++|++|+      .|++++++++++|+.++.+++.+..|              |+++..+  .+.++|+|.+
T Consensus         3 ~~~L~~L~~~~g~SG------~E~~v~~~l~~~l~~~~dev~~D~~G--------------Nli~~~g--~~~~kvml~A   60 (356)
T PRK09864          3 IELLQQLCEASAVSG------DEQEVRDILINTLEPCVNEITFDGLG--------------SFVARKG--NKGPKVAVVG   60 (356)
T ss_pred             HHHHHHHHcCCCCCC------chHHHHHHHHHHHHHhCCEEEECCCC--------------CEEEEeC--CCCcEEEEEe
Confidence            457999999999999      58899999999999999999888775              8998863  2346999999


Q ss_pred             ccccCC
Q psy17305        103 HLDVQP  108 (223)
Q Consensus       103 H~DtVp  108 (223)
                      |||+|+
T Consensus        61 HmDevG   66 (356)
T PRK09864         61 HMDEVG   66 (356)
T ss_pred             cccccC
Confidence            999983

>PRK09961 exoaminopeptidase; Provisional

Probab=98.79  E-value=1.7e-08  Score=88.16  Aligned_cols=66  Identities=17%  Similarity=0.274  Sum_probs=55.5

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      +++|++|+++||+|+      .|.+++++++++|+++|.+++.+..+              |+++++++. +.|+|+|.+
T Consensus         3 ~~~L~~L~~~~s~sG------~E~~v~~~i~~~l~~~~~~v~~D~~G--------------nvi~~~~g~-~~~~v~l~a   61 (344)
T PRK09961          3 LSLLKALSEADAIAS------SEQEVRQILLEEADRLQKEVRFDGLG--------------SVLIRLNES-TGPKVMICA   61 (344)
T ss_pred             HHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhhCCEEEECCCC--------------CEEEEEcCC-CCCEEEEEe
Confidence            357999999999999      57799999999999999998876554              899987443 357999999


Q ss_pred             ccccCCC
Q psy17305        103 HLDVQPA  109 (223)
Q Consensus       103 H~DtVp~  109 (223)
                      |||+|+.
T Consensus        62 HmDevg~   68 (344)
T PRK09961         62 HMDEVGF   68 (344)
T ss_pred             ccceece
Confidence            9999954

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]

Probab=98.64  E-value=1.4e-07  Score=83.76  Aligned_cols=179  Identities=20%  Similarity=0.214  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCccE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKHT   97 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~~   97 (223)
                      .++++++|.+|+.||++|..      +.+.+.++.+|++.+|+.++ ++.+.-.+.+-.. ...+.+.+.+.+. +.-|.
T Consensus         4 ~~~l~~~F~~~~kI~~~S~~------e~~~~p~~~~~~k~~~~~v~-dE~~~i~~~~~a~-~~~~~~~~~L~a~~d~V~~   75 (414)
T COG2195           4 MERLLDRFLELVKIPTQSKH------EKAVAPSTVGQAKLLGLLVE-DELGNIGLKKPAT-AGENYVPAVLQAHLDMVPE   75 (414)
T ss_pred             hHHHHHHHHHHeeCCCCCCC------ccccccccHHHHHHcCchhh-hhhcccccccccc-CCCCeeeEEeecccccccc
Confidence            47899999999999999994      56899999999999999985 5554322211000 0002455555442 24688


Q ss_pred             EEEEeccccCCCCC----CCCC------------------C---CCCCceeee-CCeEEecCC----CCCchhHHHHHHH
Q psy17305         98 VLVYGHLDVQPAEK----EDGW------------------N---TEPFVLTLK-DEKLYGRGA----SDDKGPVLGWLHA  147 (223)
Q Consensus        98 ill~~H~DtVp~~~----~~~w------------------~---~~P~~~~~~-~~~lyGrG~----~D~K~gv~~~l~a  147 (223)
                      +-+.+|+||+|...    ..+|                  -   +.|...... .+.+.-.|+    .|+|+|++.++.+
T Consensus        76 i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~a  155 (414)
T COG2195          76 IGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTA  155 (414)
T ss_pred             ccccccccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHH
Confidence            99999999996421    0112                  1   223322222 244555566    4999999999999


Q ss_pred             HHHHHHcc-CCCceeeEEeccc--------------------ceeeccCccc------------------CCCCcCCCCc
Q psy17305        148 IEAFQQTK-KNVPVNIKEVTGK--------------------NVLLLPMGAS------------------DDGAHSQNEK  188 (223)
Q Consensus       148 l~~l~~~~-~~~~~~i~~~~g~--------------------~~~~~~~g~~------------------~~~ahag~~~  188 (223)
                      +..+++.. .-+.++|++.++.                    -.+.+..|..                  +..+|++.++
T Consensus       156 l~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~  235 (414)
T COG2195         156 LSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVARFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAK  235 (414)
T ss_pred             HHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHhhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchH
Confidence            99999763 2234566644321                    0222221211                  2267888888


Q ss_pred             cceecccchhhHHHHHHHHH
Q psy17305        189 IDVRNYIEGTKLLAAYLYEI  208 (223)
Q Consensus       189 ~~g~~ai~g~~~~a~~~~~l  208 (223)
                      ...+||+.   ....+...+
T Consensus       236 ~~~i~a~~---~a~e~~~~~  252 (414)
T COG2195         236 GKMINALL---LAAEFILEL  252 (414)
T ss_pred             HHHhhHHH---hhhhhhhcC
Confidence            88888888   666665544

>KOG2194|consensus

Probab=98.58  E-value=4.8e-07  Score=85.37  Aligned_cols=123  Identities=15%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhcc-CCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEE---------EecCCCCCCCC--CCCCCCcEEEE
Q psy17305         20 NKFIENLKEAVAI-ESVSSSVQHRPQTINMIHYFADKLKQLGATVEI---------CDIGNQTLPNG--ESIKYPPVILG   87 (223)
Q Consensus        20 ~~~i~~l~~lv~i-~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~---------~~~~~~~~~~g--~~~~~~~nl~a   87 (223)
                      ++..+.+.++.++ |.+.+...   .+..+.+++.+.+.++.-....         +........++  ..++.-.||+.
T Consensus        57 ~rA~~~l~~ls~~G~~~~gS~~---ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvV  133 (834)
T KOG2194|consen   57 ARALKDLLSLSAAGPHPVGSDN---NEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVV  133 (834)
T ss_pred             HHHHHHHHHHHhcCCcccCchh---hHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEE
Confidence            5667777788777 55555443   5567888888887765432222         11111101111  11122369999


Q ss_pred             EcCC-CCC-ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         88 NLGN-DKA-KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        88 ~~~~-~~~-~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      ++++ ... .-.||+++|+||||.+.                     |+.|+..+|+.+|+++|.+.+....+..+|.++
T Consensus       134 ki~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFL  192 (834)
T KOG2194|consen  134 KISPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFL  192 (834)
T ss_pred             ecCCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEE
Confidence            9843 222 34799999999999863                     999999999999999999998876666777665


Q ss_pred             c
Q psy17305        166 T  166 (223)
Q Consensus       166 ~  166 (223)
                      +
T Consensus       193 f  193 (834)
T KOG2194|consen  193 F  193 (834)
T ss_pred             e
Confidence            4

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=8.7e-06  Score=64.18  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      .|++.+|+|+++.. ..   .           -+++|+.|+.+|++++|+.++.|.+.+.++.++|.|++
T Consensus         2 ~ivi~aH~Ds~~~~-~~---~-----------~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~   56 (179)
T PF04389_consen    2 YIVIGAHYDSVGGD-AD---G-----------SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVF   56 (179)
T ss_dssp             EEEEEEE--BESCC-C----T-----------CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEE
T ss_pred             EEEEEeecCCCCCc-CC---C-----------cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEE
Confidence            68999999999821 10   0           23569999999999999999999997766778888765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....

>KOG3946|consensus

Probab=96.97  E-value=0.013  Score=49.38  Aligned_cols=109  Identities=21%  Similarity=0.269  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      ..++.+.|..+. +|...+.+    +-.++.+||.+.|+.+|+.++.+.+...... |.  ..-.|++++..... ...+
T Consensus        50 ~~~~~~~L~p~l-v~Rvpgs~----g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~-g~--~~f~nii~tl~~~A-~r~l  120 (338)
T KOG3946|consen   50 WNRLWENLLPIL-VPRVPGSP----GSRQVRRFIIQHLRNLGWAVETDAFTDNTPL-GT--RNFNNLIATLDPNA-SRYL  120 (338)
T ss_pred             HHHHHHhhhhhh-ccccCCCC----ccHHHHHHHHHHHHhcCceeeeccccccCcc-ee--eeeeeEEEecCCCc-chhe
Confidence            355666655554 24333322    4678999999999999999988776543211 11  00158999986543 4578


Q ss_pred             EEEeccccC-CCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc
Q psy17305         99 LVYGHLDVQ-PAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT  154 (223)
Q Consensus        99 ll~~H~DtV-p~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~  154 (223)
                      ++.+|||+- +++    |.   |           +|+.|....++++++..++|.+.
T Consensus       121 Vlachydsk~~p~----~~---~-----------vgatdsAvpcamll~laq~l~~~  159 (338)
T KOG3946|consen  121 VLACHYDSKIFPG----GM---F-----------VGATDSAVPCAMLLNLAQALDKI  159 (338)
T ss_pred             eeecccccccCCC----cc---e-----------EeeccccccHHHHHHHHHHHHHH
Confidence            899999997 332    11   2           38999999999999999888764

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.64  E-value=0.0026  Score=54.46  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        125 KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       125 ~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      .++++.|| +.|++.|+++++++++.+++.+.+  .++.+++
T Consensus       124 ~~~~i~gk-alDdR~g~~~lle~l~~l~~~~~~--~~v~~v~  162 (292)
T PF05343_consen  124 GNGRIVGK-ALDDRAGCAVLLELLRELKEKELD--VDVYFVF  162 (292)
T ss_dssp             TTTEEEET-THHHHHHHHHHHHHHHHHTTSS-S--SEEEEEE
T ss_pred             CCCEEEEE-eCCchhHHHHHHHHHHHHhhcCCC--ceEEEEE
Confidence            35678888 589999999999999999987644  5555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....

>COG2234 Iap Predicted aminopeptidases [General function prediction only]

Probab=96.12  E-value=0.012  Score=52.73  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      .+.+++.+|+|++|.+                     +|+.|+.+|++++|++.+.|+...  ++.+|+++
T Consensus       208 ~~~~~~~a~~~s~~~~---------------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~  255 (435)
T COG2234         208 DSLGLLGAHIDSVPTG---------------------PGADDNASGVAALLELARVLKGNP--PKRTVRFV  255 (435)
T ss_pred             CceeeecccccCCcCC---------------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEE
Confidence            4566777777776664                     499999999999999999999876  66677655

>KOG2526|consensus

Probab=94.93  E-value=0.34  Score=43.35  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-C------CCCccEEEEEeccccCCCCCCCCCCCCCCce
Q psy17305         50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-N------DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL  122 (223)
Q Consensus        50 ~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~------~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~  122 (223)
                      +.+..-....|+.+..-.......+.-    ...||.+++. +      +...|+|++.+||||...-+   |    +  
T Consensus       165 ~~ll~Tasangy~iv~sg~sp~a~~s~----ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap---~----l--  231 (555)
T KOG2526|consen  165 QHLLQTASANGYSIVSSGQSPEAPPSY----KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP---G----L--  231 (555)
T ss_pred             HHHHhhhccCcEEEEecCCCcccCCCC----ccceEEeecccccccccccccCCeEEEEEeccccccCC---C----C--
Confidence            444455556666654432221111111    1379999985 2      23579999999999985431   1    1  


Q ss_pred             eeeCCeEEecCCCCCchhHHHHHHHHHHHHHcc----CCCceeeEEec
Q psy17305        123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTK----KNVPVNIKEVT  166 (223)
Q Consensus       123 ~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~----~~~~~~i~~~~  166 (223)
                              ..|+--+.+|+++.|+.++.|.+.-    -..+.|+.|+.
T Consensus       232 --------svgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l  271 (555)
T KOG2526|consen  232 --------SVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL  271 (555)
T ss_pred             --------CCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence                    2388888999999999998887743    12467888764

>KOG2276|consensus

Probab=94.60  E-value=0.015  Score=51.25  Aligned_cols=47  Identities=68%  Similarity=1.131  Sum_probs=43.5

Q ss_pred             EecccceeeccCcccCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        164 EVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       164 ~~~g~~~~~~~~g~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                      .++|..++.++.|..++++||.|+..+-.|.+.|.+.+++++.++..
T Consensus       426 ~~~~~~V~llP~G~~dD~aHsqNEkl~i~N~~~G~k~l~ay~~el~~  472 (473)
T KOG2276|consen  426 DITGKSVLLLPYGASDDGAHSQNEKLNITNYVEGTKVLAAYISELAQ  472 (473)
T ss_pred             HHhCCCeEEecccccccchhhhcccccHHHHhhhHHHHHHHHHHHhc
Confidence            45678899999999999999999999999999999999999999865

>KOG2195|consensus

Probab=93.77  E-value=0.21  Score=47.65  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=47.6

Q ss_pred             cEEEEEc-CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHH---HHHHccCCC
Q psy17305         83 PVILGNL-GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIE---AFQQTKKNV  158 (223)
Q Consensus        83 ~nl~a~~-~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~---~l~~~~~~~  158 (223)
                      .||++.+ |+..+..-|++.+|.|..-.                       |+.|..+|.+.+++..+   .|++.|.+|
T Consensus       339 ~NIig~I~Gs~epD~~ViigahrDSw~~-----------------------Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP  395 (702)
T KOG2195|consen  339 QNIIGKIEGSEEPDRYVIIGAHRDSWTF-----------------------GAIDPNSGTALLLEIARALSKLKKRGWRP  395 (702)
T ss_pred             eeEEEEEecCcCCCeEEEEecccccccc-----------------------CCcCCCccHHHHHHHHHHHHHHHHcCCCc
Confidence            6999999 44556778999999999643                       78899999877766554   456788999


Q ss_pred             ceeeEEec
Q psy17305        159 PVNIKEVT  166 (223)
Q Consensus       159 ~~~i~~~~  166 (223)
                      .++|.|+.
T Consensus       396 ~RtI~F~s  403 (702)
T KOG2195|consen  396 RRTILFAS  403 (702)
T ss_pred             cceEEEEE
Confidence            99998763

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch

Probab=89.76  E-value=0.97  Score=37.45  Aligned_cols=54  Identities=20%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-c--CCCceeeEEec
Q psy17305         96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-K--KNVPVNIKEVT  166 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-~--~~~~~~i~~~~  166 (223)
                      |.|++.+.||+.---.     .            -++|+...-+|+++.|+++++|.+. .  -..+++|.|.+
T Consensus         1 ~iIlv~armDs~s~F~-----~------------~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~   57 (234)
T PF05450_consen    1 PIILVVARMDSFSFFH-----D------------LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAF   57 (234)
T ss_pred             CEEEEEecccchhccc-----C------------CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEE
Confidence            5799999999973310     0            0459999999999999999999876 1  23567777553

Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]

Probab=86.96  E-value=2  Score=37.82  Aligned_cols=49  Identities=18%  Similarity=0.141  Sum_probs=38.0

Q ss_pred             EEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCC
Q psy17305         84 VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKN  157 (223)
Q Consensus        84 nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~  157 (223)
                      |+++.-+.  ..+++++.+|.|+=..                       |..|+..|++++++++..|+..+..
T Consensus       180 ~~Ia~~~~--en~vv~i~AH~DHW~~-----------------------G~tDN~lg~~~AV~~~~~lr~~~~~  228 (486)
T COG4882         180 NVIAVDGG--ENGVVLIGAHLDHWYT-----------------------GFTDNILGVAQAVETAGRLRGRGLA  228 (486)
T ss_pred             EEEEecCC--CCCceEEeechhhhhh-----------------------cccchhhhHHHHHHHHHHHhhcCcc
Confidence            44444333  2468999999998554                       7899999999999999999987753

>PRK09961 exoaminopeptidase; Provisional

Probab=83.92  E-value=1.5  Score=38.44  Aligned_cols=37  Identities=16%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             eeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305        124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus       124 ~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      ..++++.|| +.|++.|+++++++++.+++.+  ++.++.
T Consensus       155 ~~~~~i~gk-alDnR~g~~~lle~l~~l~~~~--~~~~v~  191 (344)
T PRK09961        155 LPHQRVMGK-AFDDRLGCYLLVTLLRELHDAE--LPAEVW  191 (344)
T ss_pred             ecCCEEEEe-echhhHhHHHHHHHHHHhhhcC--CCceEE
Confidence            367899997 5999999999999999997654  445553

>PRK00913 multifunctional aminopeptidase A; Provisional

Probab=81.09  E-value=33  Score=31.61  Aligned_cols=44  Identities=14%  Similarity=0.066  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIG   69 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~   69 (223)
                      .+-+.+.|+|++.|+.--.|      ...++++.+.+++.|++++..+..
T Consensus       171 a~~~~~aRdL~n~P~n~~tP------~~~a~~a~~~~~~~g~~v~V~~~~  214 (483)
T PRK00913        171 AEGVNLARDLVNEPPNILTP------AYLAERAKELAKEYGLEVEVLDEK  214 (483)
T ss_pred             HHHHHHHHHhhCCChhhcCH------HHHHHHHHHHHHhcCCEEEEEeHH
Confidence            45667889999988755433      367888899999999998876643

>PTZ00412 leucyl aminopeptidase; Provisional

Probab=80.17  E-value=21  Score=33.33  Aligned_cols=42  Identities=10%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEE-EEe
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVE-ICD   67 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~-~~~   67 (223)
                      .+-+.+.|+|++.|..--.|      ...++.+.+.+.+.|++++ ..+
T Consensus       212 a~~vn~ARdLvn~P~N~ltP------~~~Ae~a~~~~~~~g~~v~~Vl~  254 (569)
T PTZ00412        212 GHCVNEARNLGNLREDEGVP------QFYAEWIKKELAPLGIKVRKVLR  254 (569)
T ss_pred             HHHHHHHHHhccCChhhcCH------HHHHHHHHHHHhhcCCEEEEEEc
Confidence            34567889999988654433      3577888887888899886 443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
2zof_A	479	Crystal Structure Of Mouse Carnosinase Cn2 Complexe		1e-42
2zof_A	479	Crystal Structure Of Mouse Carnosinase Cn2 Complexe		3e-16
3dlj_A	485	Crystal Structure Of Human Carnosine Dipeptidase 1		4e-41
3dlj_A	485	Crystal Structure Of Human Carnosine Dipeptidase 1		3e-11
2pok_A	481	Crystal Structure Of A M20 Family Metallo Peptidase		5e-12
3pfe_A	472	Crystal Structure Of A M20a Metallo Peptidase (Dape		3e-07
1lfw_A	470	Crystal Structure Of Pepv Length = 470		2e-06
4h2k_A	269	Crystal Structure Of The Catalytic Domain Of Succin		7e-06
3ic1_A	377	Crystal Structure Of Zinc-Bound Succinyl-Diaminopim		9e-06
1vgy_A	393	Crystal Structure Of Succinyl Diaminopimelate Desuc		1e-05
3t68_A	268	Crystal Structure Of The Catalytic Domain Of Dape P		1e-05
3khz_A	492	Crystal Structure Of R350a Mutant Of Staphylococcus		3e-05
3khx_A	492	Crystal Structure Of Staphylococcus Aureus Metallop		3e-05
3pfo_A	433	Crystal Structure Of A Putative Acetylornithine Dea		2e-04

>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With Mn Bestatin Length = 479

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 113/161 (70%)
Query: 3   SSAEYLAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGAT 62
           +S   L  + +Y++ N++++++ L E VAI+      + R +   M+   A  +++LG +
Sbjct: 3   NSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGS 62
Query: 63  VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122
           VE+ DIG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L
Sbjct: 63  VELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTL 122
Query: 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             ++ KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 123 VEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 163

>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With Mn Bestatin Length = 479

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 51/57 (89%), Gaps = 2/57 (3%)
Query: 157 NVPVNI--KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
           ++PV +  +E TGKNV+LLP+G++DDGAHSQNEK++  NYIEGTK+LAAYLYE+S++
Sbjct: 421 SIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 477

>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1 Length = 485

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 2/160 (1%)
Query: 8   LAEISEYVESNKNKFIENLKEAVAIEXXXXXX--QHRPQTINMIHYFADKLKQLGATVEI 65
           L ++ +Y++ ++++F++ LKE VAIE        + R +   M+   AD L++LGA V  
Sbjct: 13  LEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVAS 72
Query: 66  CDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLK 125
            D+G Q LP+G+S+  PPVIL  LG+D  K TV  YGHLDVQPA++ DGW T+P+VLT  
Sbjct: 73  VDMGPQQLPDGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV 132
Query: 126 DEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
           D KLYGRGA+D+KGPVL W++A+ AF+  ++++PVNIK +
Sbjct: 133 DGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFI 172

>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1 Length = 485

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 162 IKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
            +E+  K+V+L+P+GA DDG HSQNEKI+  NYIEGTKL AA+  E++++
Sbjct: 435 FQEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL 484

>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From Streptococcus Pneumoniae Length = 481

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 50  HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA 109
           +Y  +  K++GA VEI           ES   P V+     +     T++ Y H D  PA
Sbjct: 71  NYLGEIFKRVGAEVEI----------DESYTAPFVMAHFKSSRPDAKTLIFYNHYDTVPA 120
Query: 110 EKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           + +  W  +PF L++++  +YGRG  DDKG +   L A+  + Q   ++PVNI
Sbjct: 121 DGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNI 173

>pdb|3PFE|A Chain A, Crystal Structure Of A M20a Metallo Peptidase (Dape, Lpg0809) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 At 1.50 A Resolution Length = 472

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 44  QTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH 103
           Q +N I  +       G T+EI  + N+T          P++   +   +   TVL+YGH
Sbjct: 49  QAVNHIANWCKSHAPKGXTLEIVRLKNRT----------PLLFXEIPG-QIDDTVLLYGH 97
Query: 104 LDVQPAEKEDGWNTE--PFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN 161
           LD QP  +  GW+ +  P+   LK+  LYGRG +DD       L AI A +Q     P  
Sbjct: 98  LDKQP--EXSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRC 155
Query: 162 I 162
           I
Sbjct: 156 I 156

>pdb|1LFW|A Chain A, Crystal Structure Of Pepv Length = 470

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDE-KLYGRGASDDKGPVL----GWLHAIEAFQQT 154
           + GH+DV PA   +GW  +PF + + +E ++YGRG++DDKGP L    G L   EA  + 
Sbjct: 84  IIGHMDVVPAG--EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKP 141
Query: 155 KKNV 158
           KK +
Sbjct: 142 KKKI 145

>pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 94  AKH-----TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAI 148
           AKH      +   GH DV P   E+ W++ PF   + D  LYGRGA+D KG +   + A 
Sbjct: 56  AKHGTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAA 115
Query: 149 EAFQQTKKN 157
           E + +   N
Sbjct: 116 EEYVKANPN 124

>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 377

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 94  AKH-----TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAI 148
           AKH      +   GH DV P   E+ W++ PF   + D  LYGRGA+D KG +   + A 
Sbjct: 53  AKHGTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAA 112
Query: 149 EAFQQTKKN 157
           E + +   N
Sbjct: 113 EEYVKANPN 121

>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 98  VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAF 151
           V   GH DV P    + W++ PF    +D +LYGRGA+D K  +  ++ A E F
Sbjct: 65  VCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERF 118

>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein From V.Cholerea Length = 268

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAF 151
           GH DV PA     W+T PF  T+ D  L+GRGA+D KG +   + A+E F
Sbjct: 69  GHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERF 118

>pdb|3KHZ|A Chain A, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus Metallopeptidase (SapepDAPE) IN THE APO-Form Length = 492

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 85  ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
           I G +   K    + +  H+DV PA   DGW++ PF   + ++ +  RG  DDKGP +  
Sbjct: 89  IAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAA 146
Query: 145 LHAIEAFQQTKKNVPVNIKEVTGKN 169
            +AI+  +    +    I  + G +
Sbjct: 147 YYAIKILEDMNVDWKKRIHMIIGTD 171

>pdb|3KHX|A Chain A, Crystal Structure Of Staphylococcus Aureus Metallopeptidase (SapepDAPE) IN THE APO-Form Length = 492

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 85  ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
           I G +   K    + +  H+DV PA   DGW++ PF   + ++ +  RG  DDKGP +  
Sbjct: 89  IAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAA 146
Query: 145 LHAIEAFQQTKKNVPVNIKEVTGKN 169
            +AI+  +    +    I  + G +
Sbjct: 147 YYAIKILEDMNVDWKKRIHMIIGTD 171

>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine Deacetylase (Rpa2325) From Rhodopseudomonas Palustris Cga009 At 1.90 A Resolution Length = 433

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 85  ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
           ++    +D    ++++ GH+DV P    D W+  P+   ++D    GRGA D KG V   
Sbjct: 93  VVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWXIGRGAQDXKGGVSAX 152
Query: 145 LHAIEAFQQT--KKNVPVNIKEVT 166
           + A++A +      +  V+++ VT
Sbjct: 153 IFALDAIRTAGYAPDARVHVQTVT 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	8e-69
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	5e-14
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	1e-67
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	6e-14
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	4e-56
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	1e-13
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	4e-48
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	5e-14
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	5e-36
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	2e-05
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	8e-31
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	4e-25
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	2e-20
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	9e-20
1q7l_A	198	Aminoacylase-1; catalysis, enzyme dimerization, si	2e-19
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	1e-16
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	4e-15
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	4e-15
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	9e-15
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	3e-14
3t68_A	268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	5e-14
3gb0_A	373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	1e-05
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	8e-05
2qyv_A	487	XAA-His dipeptidase; YP_718209.1, structural genom	3e-04

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479

 Score =  217 bits (555), Expect = 8e-69
 Identities = 76/161 (47%), Positives = 117/161 (72%)

Query: 3   SSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT 62
           +S   L  + +Y++ N++++++ L E VAI+SVS+  + R +   M+   A  +++LG +
Sbjct: 3   NSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGS 62

Query: 63  VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122
           VE+ DIG Q LP+G  I  PP++LG LG+D  K TV +YGHLDVQPA  EDGW++EPF L
Sbjct: 63  VELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTL 122

Query: 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
             ++ KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 123 VEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 163

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 35/49 (71%), Positives = 46/49 (93%)

Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
           +E TGKNV+LLP+G++DDGAHSQNEK++  NYIEGTK+LAAYLYE+S++
Sbjct: 429 QEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 477

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485

 Score =  214 bits (548), Expect = 1e-67
 Identities = 79/164 (48%), Positives = 115/164 (70%), Gaps = 2/164 (1%)

Query: 2   ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVS--SSVQHRPQTINMIHYFADKLKQL 59
           +     L ++ +Y++ ++++F++ LKE VAIES S     + R +   M+   AD L++L
Sbjct: 7   SPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRL 66

Query: 60  GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
           GA V   D+G Q LP+G+S+  PPVIL  LG+D  K TV  YGHLDVQPA++ DGW T+P
Sbjct: 67  GARVASVDMGPQQLPDGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDP 126

Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           +VLT  D KLYGRGA+D+KGPVL W++A+ AF+  ++++PVNIK
Sbjct: 127 YVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIK 170

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 28/49 (57%), Positives = 40/49 (81%)

Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
           +E+  K+V+L+P+GA DDG HSQNEKI+  NYIEGTKL AA+  E++++
Sbjct: 436 QEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL 484

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481

 Score =  184 bits (469), Expect = 4e-56
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 1   MASSAEYLAEISEYV-ESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQL 59
           M   +E   +I ++  +     + E L+  ++ +SV +    +     + +Y  +  K++
Sbjct: 25  MVFPSE-QEQIEKFEKDHVAQHYFEVLRTLISKKSVFA---QQVGLKEVANYLGEIFKRV 80

Query: 60  GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
           GA VEI +              P V+     +     T++ Y H D  PA+ +  W  +P
Sbjct: 81  GAEVEIDESY----------TAPFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDP 130

Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           F L++++  +YGRG  DDKG +   L A+  + Q   ++PVNI 
Sbjct: 131 FTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNIS 174

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 5/48 (10%), Positives = 19/48 (39%)

Query: 160 VNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYE 207
             + +     ++   +G ++   H  +E + + +Y    +L+   +  
Sbjct: 432 HTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRS 479

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472

 Score =  163 bits (414), Expect = 4e-48
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 8   LAEISEYV-ESNKNKFIENLKEAVAIESVSSSVQHRPQTIN----MIHYFADKLKQL--- 59
              + +Y+ +  + + + +L + + I + S     + +        +++ A+  K     
Sbjct: 5   PQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPK 64

Query: 60  GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
           G T+EI  + N+           P++   +       TVL+YGHLD QP       +  P
Sbjct: 65  GMTLEIVRLKNR----------TPLLFMEIPGQIDD-TVLLYGHLDKQPEMSGWSDDLHP 113

Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           +   LK+  LYGRG +DD       L AI A +Q          
Sbjct: 114 WKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGL-PYPRCI 156

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210
           ++      ++  +      AH  NE + +    + T  ++  LY  S+
Sbjct: 423 EQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 470

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492

 Score =  131 bits (330), Expect = 5e-36
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 24/164 (14%)

Query: 10  EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQT------INMIHYFADKLKQLGATV 63
              E V+  +++ I +LK  +AIESV    +              + Y  +   + G T 
Sbjct: 24  MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTT 83

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
              D                 I G +   K    + +  H+DV PA   DGW++ PF   
Sbjct: 84  HDVD----------------HIAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPV 125

Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTG 167
           + ++ +  RG  DDKGP +   +AI+  +    +    I  + G
Sbjct: 126 VTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIG 169

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 19/68 (27%)

Query: 162 IKEVTGKNVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLA 202
            +  T        +G                     +D  H +NE I  +     T +  
Sbjct: 423 YRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYL 482

Query: 203 AYLYEISK 210
             +Y +  
Sbjct: 483 EAIYSLCV 490

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470

 Score =  116 bits (293), Expect = 8e-31
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 25/165 (15%)

Query: 10  EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQ------TINMIHYFADKLKQLGATV 63
              E  E+ K+  +++L+E +AI+S         +       ++ +  F    K+ G   
Sbjct: 4   NFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDT 63

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           E                      G +        + + GH+DV PA   +GW  +PF + 
Sbjct: 64  ENFA----------------NYAGRVNFGAGDKRLGIIGHMDVVPAG--EGWTRDPFKME 105

Query: 124 L-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTG 167
           + ++ ++YGRG++DDKGP L   + +   ++        I  V G
Sbjct: 106 IDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLG 150

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433

 Score =  100 bits (252), Expect = 4e-25
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 14/170 (8%)

Query: 1   MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG 60
           +  S      +   V+ N N  +  L+  V   SV        +      + A +    G
Sbjct: 7   LTKSDAITQSLRAAVDRNFNDQVAFLQRMVQFRSVR------GEEAPQQEWLAQQFADRG 60

Query: 61  ATVEICDIGNQTLPNGESIKYP--------PVILGNLGNDKAKHTVLVYGHLDVQPAEKE 112
             V+   + +  + +                 ++    +D    ++++ GH+DV P    
Sbjct: 61  YKVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPV 120

Query: 113 DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           D W+  P+   ++D  + GRGA D KG V   + A++A +         +
Sbjct: 121 DLWSDPPYEAKVRDGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDARV 170

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 2   ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA 61
           A + +    + +     +   I+ L++ V IE+ +             ++   +LK LG 
Sbjct: 1   ALAQKRDNVLFQAATDEQPAVIKTLEKLVNIETGTG---DAEGIAAAGNFLEAELKNLGF 57

Query: 62  TVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV 121
           TV                     I+G +     K  +L+  H+D    +        PF 
Sbjct: 58  TVTRSKSAGLV--------VGDNIVGKIKGRGGK-NLLLMSHMDTVYLK--GILAKAPF- 105

Query: 122 LTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
             ++ +K YG G +DDKG     LH ++  ++        I
Sbjct: 106 -RVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTI 145

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356

 Score = 85.0 bits (211), Expect = 9e-20
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 15  VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLP 74
           + +   + +  LK  ++I S+S       +      +  + ++  G              
Sbjct: 6   IPTMTAEAVSLLKSLISIPSIS------REETQAADFLQNYIEAEGMQTGR--------- 50

Query: 75  NGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA 134
                K   V   +   D  K T+L+  H+D       +GW  +PF    ++ KLYG G+
Sbjct: 51  -----KGNNVWCLSPMFDLKKPTILLNSHIDTVKPV--NGWRKDPFTPREENGKLYGLGS 103

Query: 135 SDDKGPVLGWLHAIEAFQQTKKNVPVNI-----KEVTGKN--VLLLPMGASDDGA 182
           +D    V+  L       +T +N  +       +EV+GK     +LP       A
Sbjct: 104 NDAGASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKEGIESVLPGLPPVSFA 158

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 11  ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN 70
           ++      ++  +   ++ + I +V     +       + +F +  +QLG   +  ++  
Sbjct: 1   MTSKGPEEEHPSVTLFRQYLRIRTVQPKPDYGA----AVAFFEETARQLGLGCQKVEVAP 56

Query: 71  QTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV-LTLKDEKL 129
                     Y   +L   G +    ++L+  H DV P  KE  W+ +PF      +  +
Sbjct: 57  ---------GYVVTVLTWPGTNPTLSSILLNSHTDVVPVFKEH-WSHDPFEAFKDSEGYI 106

Query: 130 YGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           Y RGA D K   + +L A+   +      P  I
Sbjct: 107 YARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTI 139

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 22/135 (16%)

Query: 17  SNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNG 76
           S+    +E   + +   S+ S      Q      +  D   Q G   E  D      P+ 
Sbjct: 3   SSMQHIVELTSDLIRFPSMHS---RPEQISRCAGFIMDWCAQNGIHAERMDHDGI--PS- 56

Query: 77  ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASD 136
                   ++      +A   +L+  H+DV           + FV  +++++LYGRGA+D
Sbjct: 57  --------VMVLPEKGRA--GLLLMAHIDVVD------AEDDLFVPRVENDRLYGRGAND 100

Query: 137 DKGPVLGWLHAIEAF 151
           DK  V   L      
Sbjct: 101 DKYAVALGLVMFRDR 115

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 29/145 (20%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           +E  KE ++  SV+      P   +     A++L ++G   E    GN            
Sbjct: 9   LELAKELISRPSVT------PDDRDCQKLMAERLHKIGFAAEEMHFGNTK---------- 52

Query: 83  PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                N+    G    K  V+ + GH DV P    + W++ PF    +D +LYGRGA+D 
Sbjct: 53  -----NIWLRRGT---KAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADM 104

Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNI 162
           K  +  ++ A E F     N   +I
Sbjct: 105 KTSIACFVTACERFVAKHPNHQGSI 129

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 29/149 (19%)

Query: 19  KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGES 78
           K K +   ++ +   S+S      P         A++L++LG  +E     +        
Sbjct: 2   KEKVVSLAQDLIRRPSIS------PNDEGCQQIIAERLEKLGFQIEWMPFNDTL------ 49

Query: 79  IKYPPVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRG 133
                    NL    G        + + GH DV P   E+ W++ PF   + D  LYGRG
Sbjct: 50  ---------NLWAKHGT-SEPV--IAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRG 97

Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           A+D KG +   + A E + +   N    I
Sbjct: 98  AADMKGSLAAMIVAAEEYVKANPNHKGTI 126

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQ--LGATVEICDIGNQTLPNGESIK 80
           +E+L+  V+ ++ +      P+ I       D L+    G  VE+ D G+  +       
Sbjct: 12  LEHLETLVSFDTRN-----PPRAIAAEGGIFDYLRAQLPGFQVEVIDHGDGAV------- 59

Query: 81  YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGP 140
                  +L   +     L   HLD  P      W+ +P V+   ++++ G G  D KG 
Sbjct: 60  -------SLYAVRGTPKYLFNVHLDTVPDS--PHWSADPHVMRRTEDRVIGLGVCDIKGA 110

Query: 141 VLGWLHAIEAF 151
               + A  A 
Sbjct: 111 AAALVAAANAG 121

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 26/131 (19%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           I   +  V I S S       Q   +     D L+ L                 E  ++ 
Sbjct: 16  IVLTQRLVDIPSPS------GQEKQIADEIEDALRNLNLPGV------------EVFRFN 57

Query: 83  PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVL 142
             +L       A   +L  GH+D  P         +     ++D  +YG G  D K  + 
Sbjct: 58  NNVLARTNRGLASRVMLA-GHIDTVPIA-------DNLPSRVEDGIMYGCGTVDMKSGLA 109

Query: 143 GWLHAIEAFQQ 153
            +LH       
Sbjct: 110 VYLHTFATLAT 120

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Length = 268

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 29/145 (20%)

Query: 23  IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
           +   KE ++ +SV+      P          ++LK LG  +E     + T          
Sbjct: 9   LALAKELISRQSVT------PADAGCQDLMIERLKALGFEIESMVFEDTT---------- 52

Query: 83  PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
                N     G    +  + V+ GH DV PA     W+T PF  T+ D  L+GRGA+D 
Sbjct: 53  -----NFWARRGT---QSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADM 104

Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNI 162
           KG +   + A+E F     +   +I
Sbjct: 105 KGSLACMIVAVERFIAEHPDHQGSI 129

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 34/148 (22%)

Query: 18  NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
           N+ + +    E V ++S +     + +   +      K   LG  V   D    T     
Sbjct: 4   NQERLVNEFMELVQVDSET-----KFEA-EICKVLTKKFTDLGVEVFEDDTMAVTGHGA- 56

Query: 78  SIKYPPVILGNL-----GNDKAKHTVLVYGHLD-VQPAEKEDGWNTEPFVLTLKDEKLYG 131
                    GNL            T+    H+D V P         +P +   KD  +  
Sbjct: 57  ---------GNLICTLPATKDGVDTIYFTSHMDTVVPGN-----GIKPSI---KDGYIVS 99

Query: 132 RGAS----DDKGPVLGWLHAIEAFQQTK 155
            G +    DDK  +     AI   ++  
Sbjct: 100 DGTTILGADDKAGLASMFEAIRVLKEKN 127

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 19/142 (13%)

Query: 18  NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
           N+ + +    E V I+S +           +     +K   LG  V+  +          
Sbjct: 22  NEQRLLNTFLELVQIDSETG------NESTIQPILKEKFIALGLDVKEDEAAKHPKLGAN 75

Query: 78  SIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGAS-- 135
           ++     +   +   +    + +  H+D          N +P V    D  +Y  G +  
Sbjct: 76  NLVC--TMNSTIEEGEVP-KLYLTSHMDTVV----PAINVKPIV--KDDGYIYSDGTTIL 126

Query: 136 --DDKGPVLGWLHAIEAFQQTK 155
             DDK  +   L  ++  ++ +
Sbjct: 127 GADDKAGLAAMLEVLQVIKEQQ 148

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Length = 487

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 23/141 (16%)

Query: 18  NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
                 +   +  AI   S       +   +  +  +  K  G   E  ++GN       
Sbjct: 9   QPKLLWQWFDQICAIPHPSY------KEEQLAQFIINWAKTKGFFAERDEVGNVL----- 57

Query: 78  SIKYPPVILGNLGNDKAKHTVLVYGHLD-VQPAEKEDGWN--TEPFVLTLKDEKLYGRGA 134
            I+ P      +G +  K  V++  HLD V  A +    N   +P +  +  + +  +G 
Sbjct: 58  -IRKP----ATVGMENRK-PVVLQAHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGT 111

Query: 135 S---DDKGPVLGWLHAIEAFQ 152
           +   D+   +   L  +E+  
Sbjct: 112 TLGADNGIGMASALAVLESND 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	99.97
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	99.97
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	99.96
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	99.96
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	99.96
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	99.95
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	99.95
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	99.95
1q7l_A	198	Aminoacylase-1; catalysis, enzyme dimerization, si	99.95
4h2k_A	269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	99.95
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	99.94
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	99.94
3t68_A	268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	99.94
3ife_A	434	Peptidase T; metallopeptidase, aminopeptidase, hyd	99.94
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	99.92
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	99.92
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	99.91
3gb0_A	373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	99.91
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	99.91
1xmb_A	418	IAA-amino acid hydrolase homolog 2; structural gen	99.91
1fno_A	417	Peptidase T; metallo peptidase, protease, hydrolas	99.91
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	99.9
3io1_A	445	Aminobenzoyl-glutamate utilization protein; peptid	99.9
3mru_A	490	Aminoacyl-histidine dipeptidase; metalloprotease,	99.9
1ysj_A	404	Protein YXEP; M20 family peptidase, dinuclear meta	99.89
2qyv_A	487	XAA-His dipeptidase; YP_718209.1, structural genom	99.88
3ram_A	394	HMRA protein; two-domain, catalytic (alpha-beta-al	99.82
1z2l_A	423	Allantoate amidohydrolase; ALLC, purine cataboli a	99.82
2v8h_A	474	Beta-alanine synthase; amidohydrolase, alpha and b	99.79
2gre_A	349	Deblocking aminopeptidase; structural genomi prote	99.78
3n5f_A	408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	99.77
1tkj_A	284	Aminopeptidase, SGAP; double-zinc metalloproteinas	99.75
1rtq_A	299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	99.72
2fvg_A	340	Endoglucanase; TM1049, structural genomics, joint	99.72
1vhe_A	373	Aminopeptidase/glucanase homolog; structural genom	99.71
3tc8_A	309	Leucine aminopeptidase; phosphorylase/hydrolase-li	99.7
3gux_A	314	Putative Zn-dependent exopeptidase; aminopeptidase	99.69
2wyr_A	332	Cobalt-activated peptidase TET1; hydrolase, large	99.69
2afw_A	329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	99.61
1y0y_A	353	FRV operon protein FRVX; aminopeptidase, PDZ, hydr	99.6
1vho_A	346	Endoglucanase; structural genomics, unknown functi	99.51
2wzn_A	354	TET3, 354AA long hypothetical operon protein FRV;	99.51
1ylo_A	348	Hypothetical protein SF2450; structural genomics,	99.49
3cpx_A	321	Aminopeptidase, M42 family; YP_676701.1, putative	99.42
3pb6_X	330	Glutaminyl-peptide cyclotransferase-like protein;	99.41
4f9u_A	312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	99.32
4fuu_A	309	Leucine aminopeptidase; phosphorylase/hydrolase li	99.32
4fai_A	330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	99.3
3kl9_A	355	PEPA, glutamyl aminopeptidase; tetrahedral aminope	99.02
2vpu_A	354	TET3, 354AA long hypothetical operon protein FRV;	98.86
3isx_A	343	Endoglucanase; TM1050, structural genomics, joint	98.72
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.71
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	98.66
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	98.17
3kas_A	640	Transferrin receptor protein 1; transferrin recept	98.08
3k9t_A	435	Putative peptidase; structural genomics, joint cen	94.93
1y7e_A	458	Probable M18-family aminopeptidase 1; aminopeptida	91.62
2glf_A	450	Probable M18-family aminopeptidase 1; putative, NY	84.12
2ijz_A	428	Probable M18-family aminopeptidase 2; putative ami	82.85
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	80.87

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}

Probab=99.97  E-value=6.3e-30  Score=227.00  Aligned_cols=199  Identities=18%  Similarity=0.241  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC--CCC-----
Q psy17305          5 AEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLP--NGE-----   77 (223)
Q Consensus         5 ~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~--~g~-----   77 (223)
                      ..+++++.++++.+.+++++++++|+++||+|++      +.++++||.++|+++|++++........+.  ++.     
T Consensus        11 ~~~~~~i~~~i~~~~~~~~~~l~~l~~~ps~s~~------e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
T 3pfo_A           11 DAITQSLRAAVDRNFNDQVAFLQRMVQFRSVRGE------EAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDT   84 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCBTTC------CHHHHHHHHHHHHHTTCEEEEEETGGGTGGGSTTCCCCTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHHCCCceEEEecchhhhhcccccccccc
Confidence            3467889999999999999999999999999984      568999999999999999987653110000  000     


Q ss_pred             -CCCCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305         78 -SIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK  156 (223)
Q Consensus        78 -~~~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~  156 (223)
                       .....+||+++++++.++|+|+|.|||||||.++.+.|+.+||.+.+++|++||||++|||+|++++|.|+++|++.+.
T Consensus        85 ~~~~~~~~via~~~g~~~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~  164 (433)
T 3pfo_A           85 IDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWMIGRGAQDMKGGVSAMIFALDAIRTAGY  164 (433)
T ss_dssp             CCGGGCEEEEEEECCCCCSCCEEEEEECCBCCCCCGGGCSSCTTTCCEETTEEECTTTTTTHHHHHHHHHHHHHHHHTTE
T ss_pred             ccCCCCcEEEEEEecCCCCCEEEEEcccCCcCCCCcccCCCCCCCcEEECCEEEecchhhhhHHHHHHHHHHHHHHHcCC
Confidence             0001279999996555578999999999999987788999999999999999999999999999999999999999887


Q ss_pred             CCceeeEEecc------c--------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhh
Q psy17305        157 NVPVNIKEVTG------K--------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       157 ~~~~~i~~~~g------~--------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~  199 (223)
                      .++++|.+++.      .              .++++++..                 .+.++|++ .|..|+||+.   
T Consensus       165 ~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Ha~-~p~~g~nAi~---  240 (433)
T 3pfo_A          165 APDARVHVQTVTEEESTGNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAVWFRLRVRGTPVHVA-YSETGTSAIL---  240 (433)
T ss_dssp             EESSCEEEEEESCTTTTCHHHHHHHHTTCCCSEEEECCCCSSCEEEEECEEEEEEEEEECCCCBGG-GGGGSCCHHH---
T ss_pred             CCCccEEEEEEecCccCChhHHHHHhcCCCCCEEEEeCCCCCceEEecceEEEEEEEEEcCCCccC-CCCcCcCHHH---
Confidence            77778775531      1              134444332                 13489998 7899999999   


Q ss_pred             HHHHHHHHHHhhhh
Q psy17305        200 LLAAYLYEISKVTQ  213 (223)
Q Consensus       200 ~~a~~~~~l~~l~~  213 (223)
                      .+++.+..|..+.+
T Consensus       241 ~~~~~i~~l~~l~~  254 (433)
T 3pfo_A          241 SAMHLIRAFEEYTK  254 (433)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888765

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=228.60  Aligned_cols=202  Identities=41%  Similarity=0.670  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHhhccCCC--CCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305          7 YLAEISEYVESNKNKFIENLKEAVAIESV--SSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus         7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~--s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      .++++.++++++.++++++|++|++|||+  |+++....++.++++||.++|+++|++++.+..+...+..|+..+.++|
T Consensus        12 ~~~~i~~~i~~~~~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~~   91 (485)
T 3dlj_A           12 LLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPV   91 (485)
T ss_dssp             THHHHHHHHHHTHHHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC--CCEEECCCE
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcCCeEEEEecCcccccCCCccCCCcE
Confidence            46788999999999999999999999999  7653222247899999999999999999887653211111211111258


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      |++++++++++|+|+|+|||||||.++.+.|+.+||.+.+++|++||||++|||+|++++|.|+++|++.+..++++|.+
T Consensus        92 v~a~~~~~~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~  171 (485)
T 3dlj_A           92 ILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKF  171 (485)
T ss_dssp             EEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEE
T ss_pred             EEEEECCCCCCCEEEEEeeecCCCCCCcccCCCCCCccEEECCEEEecccccCcHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence            99999765557899999999999998667899999999999999999999999999999999999999998888888876


Q ss_pred             ecc------c-------------------ceeeccCccc----------------------CCCC--cCCCCccceeccc
Q psy17305        165 VTG------K-------------------NVLLLPMGAS----------------------DDGA--HSQNEKIDVRNYI  195 (223)
Q Consensus       165 ~~g------~-------------------~~~~~~~g~~----------------------~~~a--hag~~~~~g~~ai  195 (223)
                      ++.      +                   .+++++++..                      ..++  |++.   .|.||+
T Consensus       172 ~~~~~EE~g~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~g~~~~~i~v~G~~~~~H~~~---~g~~a~  248 (485)
T 3dlj_A          172 IIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYGTRGNSYFMVEVKCRDQDFHSGT---FGGILH  248 (485)
T ss_dssp             EEESCGGGTTTTHHHHHHHHTTTTSTTCCEEEECCCBCCC--CCEEEEEECEEEEEEEEEESCSSCEETTT---STTSSC
T ss_pred             EEEcccccCCccHHHHHHhhhhhcccCCCEEEEcCCCccCCCCeeEEEeccceEEEEEEEEECCCCCcCCC---CCcccc
Confidence            542      1                   1334443321                      1277  9986   588999


Q ss_pred             chhhHHHHHHHHHHhhhhh
Q psy17305        196 EGTKLLAAYLYEISKVTQA  214 (223)
Q Consensus       196 ~g~~~~a~~~~~l~~l~~~  214 (223)
                      .   .++..+..|..|.+.
T Consensus       249 ~---~~~~l~~~l~~l~~~  264 (485)
T 3dlj_A          249 E---PMADLVALLGSLVDS  264 (485)
T ss_dssp             C---HHHHHHHHHTTSBCT
T ss_pred             C---HHHHHHHHHHhhCCC
Confidence            9   888888888888764

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1

Probab=99.96  E-value=4.1e-29  Score=219.39  Aligned_cols=192  Identities=17%  Similarity=0.204  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCc
Q psy17305          4 SAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP   83 (223)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~   83 (223)
                      |+++.+++.++++++.++++++|++|++|||+|+.+.   ++.++++||.++|+++|++++.+......   .     .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~lv~i~s~s~~~~---~~~~~~~~l~~~l~~~G~~~~~~~~~~~~---~-----~~   71 (393)
T 1cg2_A            3 AQKRDNVLFQAATDEQPAVIKTLEKLVNIETGTGDAE---GIAAAGNFLEAELKNLGFTVTRSKSAGLV---V-----GD   71 (393)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHTSCCBTTCHH---HHHHHHHHHHHHHHHTTCEEEEEECSTTC---C-----SE
T ss_pred             ccchhhHHHHHHHhhHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHHHHcCCeEEEEecCcCC---C-----CC
Confidence            3455677889999999999999999999999997532   56889999999999999999887753100   0     15


Q ss_pred             EEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305         84 VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus        84 nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      |+++++++.. .|+|+|.|||||||+.  +.|..+||.  +++|++||||+.|||+|++++|+|++.|++.+.+++++|.
T Consensus        72 ~v~a~~~g~~-~~~i~l~aH~D~vp~~--~~~~~~Pf~--~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~  146 (393)
T 1cg2_A           72 NIVGKIKGRG-GKNLLLMSHMDTVYLK--GILAKAPFR--VEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTIT  146 (393)
T ss_dssp             EEEEEEECSS-CCCEEEEEECCBSCCT--THHHHSCCE--EETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEE
T ss_pred             eEEEEECCCC-CceEEEEEecCcCCCC--CccccCCee--eeCCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence            9999986432 4899999999999975  357778996  7899999999999999999999999999998877777887


Q ss_pred             Eeccc---------------------ceeeccCcc--c------------------CCCCcCCCCccceecccchhhHHH
Q psy17305        164 EVTGK---------------------NVLLLPMGA--S------------------DDGAHSQNEKIDVRNYIEGTKLLA  202 (223)
Q Consensus       164 ~~~g~---------------------~~~~~~~g~--~------------------~~~ahag~~~~~g~~ai~g~~~~a  202 (223)
                      +++..                     .++.++++.  .                  +.++|++..|..|+||+.   .++
T Consensus       147 ~~~~~~EE~g~~G~~~~~~~~~~~~d~~i~~e~~~~~~~~i~~~~~G~~~~~i~v~G~~~Hag~~p~~g~nAi~---~~~  223 (393)
T 1cg2_A          147 VLFNTDEEKGSFGSRDLIQEEAKLADYVLSFEPTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALV---EAS  223 (393)
T ss_dssp             EEEESCGGGTTTTTHHHHHHHHHHCSEEEECCCEETTSCEEESEECEEEEEEEEEECBCEETTSCGGGSBCHHH---HHH
T ss_pred             EEEEcccccCCccHHHHHHHHhhcCCEEEEeCCCCCCCCcEEEeeeeeEEEEEEEEeeecccCCCcccCcCHHH---HHH
Confidence            65421                     255566653  1                  238999999999999999   999


Q ss_pred             HHHHHHHhhhhh
Q psy17305        203 AYLYEISKVTQA  214 (223)
Q Consensus       203 ~~~~~l~~l~~~  214 (223)
                      +.+..|..+.++
T Consensus       224 ~~i~~l~~~~~~  235 (393)
T 1cg2_A          224 DLVLRTMNIDDK  235 (393)
T ss_dssp             HHHHHHGGGCBT
T ss_pred             HHHHHHHhhhCc
Confidence            999999887654

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*

Probab=99.96  E-value=2e-28  Score=220.05  Aligned_cols=201  Identities=40%  Similarity=0.703  Sum_probs=155.7

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305          8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG   87 (223)
Q Consensus         8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a   87 (223)
                      ++++.++++.+.++++++|++|++|||+|+++.+++++.++++||.++|+++|++++.+..+...+..|+..+.++||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~a   87 (479)
T 2zog_A            8 LKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLG   87 (479)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEE
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcCCeEEEeeccccccCCCcccCCCCEEEE
Confidence            46788999999999999999999999999865444467899999999999999999887653100001110000159999


Q ss_pred             EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305         88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT-  166 (223)
Q Consensus        88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~-  166 (223)
                      +++++++.|+|+|.|||||||.+..+.|+.+||.+.++||++||||+.|||+|++++|+|++.|++.+.+++++|.+++ 
T Consensus        88 ~~~~~~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~  167 (479)
T 2zog_A           88 KLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLE  167 (479)
T ss_dssp             EECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEE
T ss_pred             EecCCCCCCeEEEEEecCCCCCCccccCcCCCCcceeECCEEEeeccccChHHHHHHHHHHHHHHHhCCCCCCcEEEEEe
Confidence            9976545789999999999999765689999999999999999999999999999999999999999888888887553 


Q ss_pred             -----cc-------------------ceeeccCccc----------------------CCC--CcCCCCccceecccchh
Q psy17305        167 -----GK-------------------NVLLLPMGAS----------------------DDG--AHSQNEKIDVRNYIEGT  198 (223)
Q Consensus       167 -----g~-------------------~~~~~~~g~~----------------------~~~--ahag~~~~~g~~ai~g~  198 (223)
                           |.                   .+++++++..                      ..+  +|++.   .|.||+.  
T Consensus       168 ~~EE~g~~Ga~~~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~i~~~~~G~~~~~i~v~G~~~~~Hs~~---~g~~ai~--  242 (479)
T 2zog_A          168 GMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGV---YGGSVHE--  242 (479)
T ss_dssp             SCGGGTCTTHHHHHHHTTTTTTTTCCEEEECCCBCSSSSSCEEEEEECEEEEEEEEEECCSSCEEHHH---HTTTSCC--
T ss_pred             cccccCCccHHHHHHhhhhhhcccCCEEEEeCCCcCCCCCeEEEEecceEEEEEEEEEeCCCCCccCC---CCCCccC--
Confidence                 21                   1234443221                      114  78876   3889999  


Q ss_pred             hHHHHHHHHHHhhhhh
Q psy17305        199 KLLAAYLYEISKVTQA  214 (223)
Q Consensus       199 ~~~a~~~~~l~~l~~~  214 (223)
                       .+++.+..|..+.+.
T Consensus       243 -~~~~~i~~l~~l~~~  257 (479)
T 2zog_A          243 -AMTDLISLMGCLVDK  257 (479)
T ss_dssp             -HHHHHHHHHTTSBCT
T ss_pred             -HHHHHHHHHHhcCCC
Confidence             999999998877654

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}

Probab=99.96  E-value=8.8e-28  Score=216.19  Aligned_cols=187  Identities=23%  Similarity=0.410  Sum_probs=152.2

Q ss_pred             HHHHHHHHHhcHH-HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305          8 LAEISEYVESNKN-KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL   86 (223)
Q Consensus         8 ~~~~~~~i~~~~~-~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~   86 (223)
                      ++++.++++++.+ ++++++++|++|||+|+...   ++.++++||.++|+++|++++.++..      +     ..||+
T Consensus        31 m~~~~~~~~~~~~~~~~~~l~~l~~ips~s~~e~---~~~~~~~~l~~~l~~~G~~~~~~~~~------~-----~~~v~   96 (481)
T 2pok_A           31 QEQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQV---GLKEVANYLGEIFKRVGAEVEIDESY------T-----APFVM   96 (481)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSCCCGGGCT---THHHHHHHHHHHHHHTTCEEEEECSS------S-----SCEEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHHHcCCEEEEecCC------C-----CcEEE
Confidence            4678899999999 99999999999999998543   56899999999999999998877632      1     16999


Q ss_pred             EEcCCC-CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         87 GNLGND-KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        87 a~~~~~-~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      +++++. ++.|+|+|.|||||||.+..+.|+.+||.+.++||++||||++|||+|++++|+|++.|++.+..++++|.++
T Consensus        97 a~~~g~~~~~~~i~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~  176 (481)
T 2pok_A           97 AHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFI  176 (481)
T ss_dssp             EEECCSSTTCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEE
T ss_pred             EEecCCCCCCCeEEEEEeccCcCCCCccccccCCCCceeeCCeEEccccccCcHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            998532 4568999999999999986668999999999999999999999999999999999999999855677788755


Q ss_pred             c------cc------------------ceeeccCccc----------------------CCC--CcCCCCccceecccch
Q psy17305        166 T------GK------------------NVLLLPMGAS----------------------DDG--AHSQNEKIDVRNYIEG  197 (223)
Q Consensus       166 ~------g~------------------~~~~~~~g~~----------------------~~~--ahag~~~~~g~~ai~g  197 (223)
                      +      |+                  .++.++++..                      +.+  +|+ ..|..|.||+. 
T Consensus       177 ~~~~EE~g~~g~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~i~~~~~G~~~~~i~v~G~~g~~Hs-s~p~~g~nAi~-  254 (481)
T 2pok_A          177 MEGAEESASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNKGIVTFDAKVKSADVDIHS-SYGGVVESAPW-  254 (481)
T ss_dssp             EESCGGGTTTTHHHHHHHHHHHHTTCSEEECSCCBBCTTSCEEEECCBCEEEEEEEEEECSSSCEEG-GGTTTBCCHHH-
T ss_pred             EecccccCchhHHHHHHHhHhhccCCCEEEECCCCccCCCCeeEEEecceeEEEEEEEecCCCCccc-cCCCCCCCHHH-
Confidence            3      21                  0222222210                      115  799 88889999999 


Q ss_pred             hhHHHHHHHHHHhhh
Q psy17305        198 TKLLAAYLYEISKVT  212 (223)
Q Consensus       198 ~~~~a~~~~~l~~l~  212 (223)
                        .+++.+..|..+.
T Consensus       255 --~~a~~i~~l~~~~  267 (481)
T 2pok_A          255 --YLLQALQSLRAAD  267 (481)
T ss_dssp             --HHHHHHHHTBCTT
T ss_pred             --HHHHHHHHhhCCC
Confidence              9999999887653

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A

Probab=99.95  E-value=2.6e-28  Score=220.53  Aligned_cols=142  Identities=25%  Similarity=0.389  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCC------CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCC
Q psy17305          7 YLAEISEYVESNKNKFIENLKEAVAIESVSSSVQ------HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIK   80 (223)
Q Consensus         7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~------~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~   80 (223)
                      |.+++.++++.+.+++++++++|++|||+|++..      +..++.++++|+.++|+++|++++... +           
T Consensus        21 m~~~i~~~i~~~~~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G~~~~~~~-~-----------   88 (492)
T 3khx_A           21 MASMWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD-H-----------   88 (492)
T ss_dssp             --CTTHHHHHTTHHHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET-T-----------
T ss_pred             hHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcCCcceEeC-C-----------
Confidence            3457888999999999999999999999998652      234678999999999999999987652 1           


Q ss_pred             CCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCce
Q psy17305         81 YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPV  160 (223)
Q Consensus        81 ~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~  160 (223)
                        ...++.++.  +.|+|+|+|||||||+++  .|+.+||.+.+++|+|||||++|||++++++|+|+++|++.+.++++
T Consensus        89 --~~~~~~~g~--~~~~i~l~~H~D~vp~~~--~w~~~Pf~~~~~~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~  162 (492)
T 3khx_A           89 --IAGRIEAGK--GNDVLGILCHVDVVPAGD--GWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKK  162 (492)
T ss_dssp             --TEEEEEEEC--SSCEEEEEEECCCCCCCS--CCSSCTTSCEECSSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             --EEEEEEeCC--CCCEEEEEEeccCCCCCC--CcccCCCceEEECCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCCC
Confidence              233444443  368999999999999973  79999999999999999999999999999999999999999888888


Q ss_pred             eeEEec
Q psy17305        161 NIKEVT  166 (223)
Q Consensus       161 ~i~~~~  166 (223)
                      +|.+++
T Consensus       163 ~i~~~~  168 (492)
T 3khx_A          163 RIHMII  168 (492)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            887553

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1

Probab=99.95  E-value=2.2e-27  Score=208.41  Aligned_cols=171  Identities=25%  Similarity=0.326  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .+++++++++|+++||+|+.      +.++++||.++|+++|++++....+.           ..|++++++.  ++|+|
T Consensus         5 ~~~~~~~l~~lv~~ps~s~~------e~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~nv~a~~g~--~~~~i   65 (393)
T 1vgy_A            5 ETQSLELAKELISRPSVTPD------DRDCQKLMAERLHKIGFAAEEMHFGN-----------TKNIWLRRGT--KAPVV   65 (393)
T ss_dssp             CSHHHHHHHHHHTSCCBTTC------CTTHHHHHHHHHHTTTCEEEECCBTT-----------BCEEEEEECS--SSSEE
T ss_pred             hHHHHHHHHHHhcCCCCCCC------cHHHHHHHHHHHHHcCCcEEEEecCC-----------CcEEEEEECC--CCCEE
Confidence            36789999999999999984      34688999999999999988765432           1599999843  36899


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecc----------c
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTG----------K  168 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g----------~  168 (223)
                      +|.|||||||.++.+.|..+||.+.++||++||||++|||+|++++|+|++.|++.+..++++|.+++.          .
T Consensus        66 ~l~~H~D~Vp~~~~~~w~~~Pf~~~~~~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~Ga  145 (393)
T 1vgy_A           66 CFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGT  145 (393)
T ss_dssp             EEEEECCBCCCCCGGGSSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSH
T ss_pred             EEEcccCCcCCCCcccCCCCCCceEEECCEEEecCcccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCcCCH
Confidence            999999999998667899999999999999999999999999999999999999988777888875431          1


Q ss_pred             ---------------ceeeccCccc----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 ---------------NVLLLPMGAS----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 ---------------~~~~~~~g~~----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                     .+++.+++..                      +.++|++ .|..|+||+.   .+++.+..|..+
T Consensus       146 ~~~~~~~~~~~~~~d~~i~~e~~~~~~~g~~i~~g~~G~~~~~i~v~G~~~Ha~-~P~~g~nAi~---~~a~~i~~l~~~  221 (393)
T 1vgy_A          146 TKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIA-YPHLAINPVH---TFAPALLELTQE  221 (393)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCBSSSTTSEEECEECEEEEEEEEEECBCEETT-CGGGCBCHHH---HHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCcCCCEEEEeCCCCcccCCceeEEeeeeEEEEEEEEEccCcccC-CCccCCCHHH---HHHHHHHHhhcc
Confidence                           1223333211                      2388998 5899999999   999999998775


Q ss_pred             h
Q psy17305        212 T  212 (223)
Q Consensus       212 ~  212 (223)
                      .
T Consensus       222 ~  222 (393)
T 1vgy_A          222 V  222 (393)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}

Probab=99.95  E-value=5.2e-27  Score=210.86  Aligned_cols=187  Identities=26%  Similarity=0.400  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhcH-HHHHHHHHHhhccCCCCCC--CCC--chHHHHHHHHHHHHHHhcCCc---EEEEecCCCCCCCCCCC
Q psy17305          8 LAEISEYVESNK-NKFIENLKEAVAIESVSSS--VQH--RPQTINMIHYFADKLKQLGAT---VEICDIGNQTLPNGESI   79 (223)
Q Consensus         8 ~~~~~~~i~~~~-~~~i~~l~~lv~i~s~s~~--~~~--~~~~~~~~~~l~~~l~~~G~~---~~~~~~~~~~~~~g~~~   79 (223)
                      .+++.++++++. ++++++|++|++|||+|+.  +..  .+++.++++++.++|+++|++   ++..+...     +   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~~~~~~~~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~-----~---   76 (472)
T 3pfe_A            5 PQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKN-----R---   76 (472)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTCCCBCGGGCTTHHHHCHHHHHHHHHHHHHHHTCCTTCEEEEECCTT-----S---
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCCCCcCCCccccccccchHHHHHHHHHHHHHHcCCCCcceEEEecCC-----C---
Confidence            467889999988 8899999999999999963  110  124789999999999999985   55554331     1   


Q ss_pred             CCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCC--CCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCC
Q psy17305         80 KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWN--TEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKN  157 (223)
Q Consensus        80 ~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~--~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~  157 (223)
                        .+||++++++ +++|+|+|+|||||||++  +.|+  .+||.+.+++|++||||++|||++++++|.|+++|++.+..
T Consensus        77 --~~~v~a~~~g-~~~~~i~l~~H~D~vp~~--~~w~~~~~Pf~~~~~~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~  151 (472)
T 3pfe_A           77 --TPLLFMEIPG-QIDDTVLLYGHLDKQPEM--SGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLP  151 (472)
T ss_dssp             --CCEEEEEECC-SEEEEEEEEEECCBCCCC--SCCCTTCBTTBCEEETTEEESTTCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             --CcEEEEEEcC-CCCCeEEEEccccCCCCc--CCCCcCCCCCceEEECCEEEEeCcccCcHHHHHHHHHHHHHHHcCCC
Confidence              2699999855 356899999999999996  6799  89999999999999999999999999999999999999877


Q ss_pred             CceeeEEec------cc------------------ceeeccCccc------------------------CCCCcCCCCcc
Q psy17305        158 VPVNIKEVT------GK------------------NVLLLPMGAS------------------------DDGAHSQNEKI  189 (223)
Q Consensus       158 ~~~~i~~~~------g~------------------~~~~~~~g~~------------------------~~~ahag~~~~  189 (223)
                      ++ +|.+++      |+                  .+++++.+..                        +.++|++..+.
T Consensus       152 ~~-~v~~~~~~~EE~g~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~~G~~~~~~~v~~~G~~~H~~~~~~  230 (472)
T 3pfe_A          152 YP-RCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASG  230 (472)
T ss_dssp             CE-EEEEEEESCGGGTSTTHHHHHHHHHHHHCCCSEEEEECCBCSCSSSCEEEEEECEEEEEEEEEESCSSCBCHHHHTT
T ss_pred             CC-cEEEEEEeCCCCCChhHHHHHHHhHhhccCCCEEEEeCCCcCCCCCeeEEEeeeEEEEEEEEEEeCCCCcccCCCCC
Confidence            76 777553      21                  1334443211                        23889886443


Q ss_pred             ceecccchhhHHHHHHHHHHhh
Q psy17305        190 DVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       190 ~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                      .+.||+.   .+++.+..|..+
T Consensus       231 ~~~nai~---~~~~~i~~l~~~  249 (472)
T 3pfe_A          231 IVADSFR---VARQLISRIEDE  249 (472)
T ss_dssp             TSCCHHH---HHHHHHHHHBCT
T ss_pred             CCCCHHH---HHHHHHHHhhCc
Confidence            3469999   999999999877

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4

Probab=99.95  E-value=4.4e-27  Score=188.66  Aligned_cols=133  Identities=20%  Similarity=0.362  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCccE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKHT   97 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~~   97 (223)
                      .++++++|++|++|||+|+.+    ++.++++|++++|+++|++++.++...     |     ..|+++++.+ ++..|+
T Consensus         9 ~~~~~~~l~~lv~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~~-----g-----~~~~i~~~~g~~~~~~~   74 (198)
T 1q7l_A            9 EHPSVTLFRQYLRIRTVQPKP----DYGAAVAFFEETARQLGLGCQKVEVAP-----G-----YVVTVLTWPGTNPTLSS   74 (198)
T ss_dssp             CCHHHHHHHHHHTSCCBTTSC----CHHHHHHHHHHHHHHHTCEEEEEEEET-----T-----EEEEEEEECCSSTTSCE
T ss_pred             HHHHHHHHHHHhcCCCCCCCc----CHHHHHHHHHHHHHHCCCeEEEEEcCC-----C-----CeEEEEEEccCCCCCCe
Confidence            367899999999999999743    477899999999999999988876421     1     1599998843 334589


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |+|+|||||||++. +.|..+||.+.+ ++|++||||+.|||+|++++|+|+++|++.+.+++++|.+++
T Consensus        75 ill~aH~DtVp~~~-~~w~~~pf~~~~~~~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~  143 (198)
T 1q7l_A           75 ILLNSHTDVVPVFK-EHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTF  143 (198)
T ss_dssp             EEEEEECCBCCCCG-GGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEE
T ss_pred             EEEEeeecccCCCc-ccCccCCCeeeEccCCEEEeCcchhchHHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence            99999999999973 579999999887 799999999999999999999999999999888888888665

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}

Probab=99.95  E-value=4.4e-27  Score=196.98  Aligned_cols=128  Identities=25%  Similarity=0.425  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      +++++++++|++|||+|++.      ..+++||.++|+++|++++.+..+.           .+|++++++.  ++|+|+
T Consensus         6 ~~~~~~l~~lv~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~nv~a~~g~--~~~~i~   66 (269)
T 4h2k_A            6 EKVVSLAQDLIRRPSISPND------EGCQQIIAERLEKLGFQIEWMPFND-----------TLNLWAKHGT--SEPVIA   66 (269)
T ss_dssp             HHHHHHHHHHHTSCCBTTCC------TTHHHHHHHHHHTTTCEEEECCBTT-----------BCEEEEEECS--SSCEEE
T ss_pred             HHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHHHcCCeEEEEEcCC-----------ceEEEEEeCC--CCCEEE
Confidence            57899999999999999853      3688999999999999998776542           1699999853  368999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |.|||||||.++.+.|+.+||.+.+++|++||||+.|||+|++++++|+++|++.+..++++|.+++
T Consensus        67 l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~  133 (269)
T 4h2k_A           67 FAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLI  133 (269)
T ss_dssp             EEEECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEE
T ss_pred             EEeeecccCCCCcccccCCCCCeEEECCEEEeCCcccChHHHHHHHHHHHHHHHhCCCCCccEEEEE
Confidence            9999999999877789999999999999999999999999999999999999998877788887654

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.94  E-value=7e-27  Score=202.93  Aligned_cols=168  Identities=19%  Similarity=0.273  Sum_probs=131.5

Q ss_pred             HHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CC
Q psy17305         15 VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DK   93 (223)
Q Consensus        15 i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~   93 (223)
                      +++..+++++++++|++|||+|++      +.++++||.++|+++|++++.+  .             .|+++++++ +.
T Consensus         6 i~~~~~~~~~~~~~l~~~ps~s~~------e~~~~~~l~~~l~~~g~~~~~~--~-------------~nv~a~~~g~~~   64 (356)
T 3ct9_A            6 IPTMTAEAVSLLKSLISIPSISRE------ETQAADFLQNYIEAEGMQTGRK--G-------------NNVWCLSPMFDL   64 (356)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCBTTC------CHHHHHHHHHHHHHTTCCEEEE--T-------------TEEEEECSSCCT
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHCCCeEEEE--e-------------eeEEEEEecCCC
Confidence            445567899999999999999983      5688999999999999998876  2             499999854 44


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------c-
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------T-  166 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~-  166 (223)
                      +.|+|+|.|||||||.++  .|+.+||.+.+++|++||||++|||+|++++|+|++.|++.+  ++++|.++      . 
T Consensus        65 ~~~~i~l~aH~D~vp~~~--~w~~~p~~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~  140 (356)
T 3ct9_A           65 KKPTILLNSHIDTVKPVN--GWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVS  140 (356)
T ss_dssp             TSCEEEEEEECCBCCCC---------CCCEECSSEEESTTTTTTHHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGT
T ss_pred             CCCeEEEEccccccCCCC--CCCCCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccC
Confidence            468999999999999973  699999999999999999999999999999999999999877  66677644      2 


Q ss_pred             cc--------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        167 GK--------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       167 g~--------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                      |.              .++.++++.                 .+.++|++. | .|+||+.   .+++.+..|..+.
T Consensus       141 g~~G~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Ha~~-p-~g~nAi~---~~~~~i~~l~~~~  212 (356)
T 3ct9_A          141 GKEGIESVLPGLPPVSFAIVGEPTEMQPAIAEKGLMVLDVTATGKAGHAAR-D-EGDNAIY---KVLNDIAWFRDYR  212 (356)
T ss_dssp             CTTTHHHHGGGSCCCSEEEECCSBTTCCEEEECCCEEEEEEEECBCCBTTS-S-CCBCTTG---GGHHHHHHHHHCC
T ss_pred             CccCHHHHHhhCCCCCEEEEcCCCCceEEEeeeEEEEEEEEEECCCcccCC-C-CCCCHHH---HHHHHHHHHHhhh
Confidence            21              133333331                 123899998 6 8999999   9999999988764

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A

Probab=99.94  E-value=7.7e-27  Score=203.01  Aligned_cols=169  Identities=23%  Similarity=0.357  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      +++++++++|+++||+|+.      +.++++||.++|+++|++++....+..           .|++++++.  ++|+|+
T Consensus         3 ~~~~~~~~~L~~~ps~s~~------e~~~~~~l~~~l~~~g~~~~~~~~~~~-----------~n~~a~~g~--~~~~i~   63 (377)
T 3isz_A            3 EKVVSLAQDLIRRPSISPN------DEGCQQIIAERLEKLGFQIEWMPFNDT-----------LNLWAKHGT--SEPVIA   63 (377)
T ss_dssp             HHHHHHHHHHHTSCCBTTC------CTTHHHHHHHHHHHTTCEEEECCBTTB-----------CEEEEEEES--SSCEEE
T ss_pred             hHHHHHHHHHhcCCCCCCC------hhhHHHHHHHHHHHCCCceEEeecCCC-----------ceEEEEeCC--CCCEEE
Confidence            5688999999999999985      346899999999999999887654321           599998843  468999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----------cc-
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----------GK-  168 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----------g~-  168 (223)
                      |.|||||||.++.+.|+.+||.+.+++|++||||++|||+|+++++.|++.|++.+..++++|.+++          |. 
T Consensus        64 l~aH~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~G~~  143 (377)
T 3isz_A           64 FAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTI  143 (377)
T ss_dssp             EEEECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHH
T ss_pred             EeccccccCCCCcccCCCCCCCcEEECCEEEeCChhhhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCccccHH
Confidence            9999999999866789999999999999999999999999999999999999998877888887543          21 


Q ss_pred             --------------ceeeccCcc----------------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        169 --------------NVLLLPMGA----------------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       169 --------------~~~~~~~g~----------------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                                    .+++.++..                      .+.++|++. |..|+||+.   .+++.+..|..+
T Consensus       144 ~~~~~~~~~~~~~d~~~~~e~~~~~~~g~~i~~g~~g~~~~~i~~~G~~~Ha~~-p~~g~nai~---~~~~~i~~l~~~  218 (377)
T 3isz_A          144 HVVETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQGHVAY-PHLAENPIH---KAALFLQELTTY  218 (377)
T ss_dssp             HHHHHHHHTTCCCCEEEECCCCBSSSTTSEEEEEECEEEEEEEEEECC--------CGGGCHHH---HHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEEcceEEEEEEEEEccccccCC-CccCcCHHH---HHHHHHHHHHhc
Confidence                          022222211                      023789986 899999999   999999988765

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A

Probab=99.94  E-value=1.6e-27  Score=199.45  Aligned_cols=129  Identities=26%  Similarity=0.353  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .+++++++++|++|||+|++.      ..+++||.++|+++|++++.+..+.           .+|++++++.  +.|+|
T Consensus         5 ~~~~~~~l~~lv~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~nv~a~~g~--~~~~i   65 (268)
T 3t68_A            5 DSPVLALAKELISRQSVTPAD------AGCQDLMIERLKALGFEIESMVFED-----------TTNFWARRGT--QSPLF   65 (268)
T ss_dssp             CCHHHHHHHHHHTSCCBTTCC------TTHHHHHHHHHHHTTCEECCCEETT-----------EEC-CEEECS--SSCEE
T ss_pred             HHHHHHHHHHHhCCCCCCCCc------hHHHHHHHHHHHHCCCeEEEEecCC-----------ccEEEEEeCC--CCCeE
Confidence            467899999999999999853      3688999999999999987765542           1589999853  36899


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.|||||||.++.+.|+.+||.+.+++|++||||+.|||+|++++++|+++|++.+..++++|.+++
T Consensus        66 ~l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~  133 (268)
T 3t68_A           66 VFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLI  133 (268)
T ss_dssp             EEEEECCBCCCCCGGGCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEE
T ss_pred             EEEccccccCCCCcccCCCCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEE
Confidence            99999999999877789999999999999999999999999999999999999998877788887554

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}

Probab=99.94  E-value=2.9e-26  Score=203.87  Aligned_cols=176  Identities=19%  Similarity=0.235  Sum_probs=138.8

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCC----CchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCC
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQ----HRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGND   92 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~----~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~   92 (223)
                      ..++++++|++|++|||+|+...    +++++.++++||.++|+++|++ ++.++.              .||++++++.
T Consensus        25 ~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~d~~--------------~nv~a~~~g~   90 (434)
T 3ife_A           25 MKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDN--------------GYVMATLPAN   90 (434)
T ss_dssp             HHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTT--------------SCEEEEECCB
T ss_pred             HHHHHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCceEEECCC--------------cEEEEEeCCC
Confidence            34789999999999999997432    3557889999999999999996 776532              4899998543


Q ss_pred             C--CccEEEEEeccccCCCCCCCCCCCCCCceee-e---------------------------CCeEEecCC----CCCc
Q psy17305         93 K--AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTL-K---------------------------DEKLYGRGA----SDDK  138 (223)
Q Consensus        93 ~--~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~-~---------------------------~~~lyGrG~----~D~K  138 (223)
                      .  +.|+|+|+|||||||..  .+|..+||.... +                           +++|||||+    +|||
T Consensus        91 ~~~~~~~v~l~~H~DtVp~~--~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K  168 (434)
T 3ife_A           91 TDKDVPVIGFLAHLDTATDF--TGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDK  168 (434)
T ss_dssp             SSSCCCCEEEEEECCBCTTS--CCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHH
T ss_pred             CCCCCCeEEEEEEcccCCCC--CCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhH
Confidence            2  36899999999999974  469999986432 2                           269999998    9999


Q ss_pred             hhHHHHHHHHHHHHHccCCCceeeEEeccc-------------------ceeeccCccc------------------CCC
Q psy17305        139 GPVLGWLHAIEAFQQTKKNVPVNIKEVTGK-------------------NVLLLPMGAS------------------DDG  181 (223)
Q Consensus       139 ~gv~~~l~al~~l~~~~~~~~~~i~~~~g~-------------------~~~~~~~g~~------------------~~~  181 (223)
                      +|++++|+|+++|++.+..++++|.+++..                   .++.++++..                  +.+
T Consensus       169 ~gva~~l~a~~~L~~~~~~~~~~i~~if~~~EE~g~Ga~~~~~~~~~~d~~~~~d~~~~g~i~~~~~G~~~~~i~v~G~~  248 (434)
T 3ife_A          169 AGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGRGPAHFDVEAFGASFAYMMDGGPLGGLEYESFNAAGAKLTFNGTN  248 (434)
T ss_dssp             HHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGTCTGGGCCHHHHCCSEEEECCCCSTTEEECCBCEEEEEEEEEECBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEEEECCcccChHHHHhhhhhcCCCEEEEecCCCCCceeecCCCeEEEEEEEEEEe
Confidence            999999999999999887788888765421                   1233332211                  238


Q ss_pred             CcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        182 AHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       182 ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                      +|++..|..|+||+.   .+++.+..|..+.
T Consensus       249 ~Hag~~P~~g~nAi~---~aa~~i~~l~~~~  276 (434)
T 3ife_A          249 THPGTAKNKMRNATK---LAMEFNGHLPVEE  276 (434)
T ss_dssp             CCGGGCTTTCBCHHH---HHHHHHHTSCTTC
T ss_pred             cCCCCCcccchhHHH---HHHHHHHhccccc
Confidence            999999999999999   9999999887763

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1

Probab=99.92  E-value=2.2e-24  Score=193.26  Aligned_cols=138  Identities=27%  Similarity=0.451  Sum_probs=118.3

Q ss_pred             HHHHHHhcHHHHHHHHHHhhccCCCCCCC------CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305         11 ISEYVESNKNKFIENLKEAVAIESVSSSV------QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus        11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~------~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      +.++++++.++++++|++|++|||+|++.      .+.+++.++++||.++|+++|++++..  +.            .+
T Consensus         5 ~~~~~~~~~~~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G~~~~~~--~~------------~~   70 (470)
T 1lfw_A            5 FKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENF--AN------------YA   70 (470)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE--TT------------TE
T ss_pred             HHHHHHHhHHHHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcCCeEEEe--cC------------eE
Confidence            56778888899999999999999999753      123456899999999999999988753  21            47


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      +++.++.  +.|+|+|+|||||||.++  .|+.+||.+.+ +||+|||||+.|||+|++++|+|+++|++.+.+++++|.
T Consensus        71 ~~~~~g~--~~~~i~l~~H~D~vp~~~--~w~~~Pf~~~~~~~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~i~  146 (470)
T 1lfw_A           71 GRVNFGA--GDKRLGIIGHMDVVPAGE--GWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKID  146 (470)
T ss_dssp             EEEEECC--CSSEEEEEEECCBCCCCS--CCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred             EEEEeCC--CCCeEEEEEeecccCCCC--CccCCCcceeEeeCCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence            7777743  368999999999999974  79999999999 999999999999999999999999999999888888888


Q ss_pred             Eec
Q psy17305        164 EVT  166 (223)
Q Consensus       164 ~~~  166 (223)
                      +++
T Consensus       147 ~i~  149 (470)
T 1lfw_A          147 FVL  149 (470)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A

Probab=99.92  E-value=4.8e-25  Score=192.07  Aligned_cols=170  Identities=18%  Similarity=0.261  Sum_probs=126.4

Q ss_pred             HHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCC
Q psy17305         14 YVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDK   93 (223)
Q Consensus        14 ~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~   93 (223)
                      +++.+.++++++|++|++|||+|.... ++++.++++||.++|+  |++++.+..+.     +     .+|+++ +++. 
T Consensus         3 ~~~~~~~~~~~~l~~l~~ips~s~~~~-~~~e~~~~~~l~~~l~--G~~~~~~~~~~-----~-----~~~~~a-~~g~-   67 (369)
T 2f7v_A            3 HMTDLLASTLEHLETLVSFDTRNPPRA-IAAEGGIFDYLRAQLP--GFQVEVIDHGD-----G-----AVSLYA-VRGT-   67 (369)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCBTTTTC-CCSSSHHHHHHHTTCT--TCEEEEEECST-----T-----CEEEEE-EESC-
T ss_pred             hhhhhhHHHHHHHHHHhCCCCcCCCCC-CccHHHHHHHHHHHhC--CCceEEEEcCC-----C-----ceEEEE-EcCC-
Confidence            344556789999999999999984220 1136689999999999  99998887632     1     169999 7432 


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------c-
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------T-  166 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~-  166 (223)
                        |+|+|.|||||||.++  .|+.+||.+.++||++||||+.|||+|++++|++++.       ++++|.++      . 
T Consensus        68 --~~i~l~~H~D~vp~~~--~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~  136 (369)
T 2f7v_A           68 --PKYLFNVHLDTVPDSP--HWSADPHVMRRTEDRVIGLGVCDIKGAAAALVAAANA-------GDGDAAFLFSSDEEAN  136 (369)
T ss_dssp             --CSEEEEEECCBCCCCS--SCSSCTTSCEECSSEEECTTTTTTHHHHHHHHHHHTT-------CCCCEEEEEESCTTSS
T ss_pred             --CeEEEEeeecccCCCC--CCCCCCCCcEEECCEEEecccccccHHHHHHHHHHhc-------CCCCEEEEEEeCcccC
Confidence              7899999999999973  7999999999999999999999999999999999976       44555533      2 


Q ss_pred             cc--------------ceeeccCcc-----------------cCCCCcCCCCcc-ceecccchhhHHHHHHHHHHhhhh
Q psy17305        167 GK--------------NVLLLPMGA-----------------SDDGAHSQNEKI-DVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       167 g~--------------~~~~~~~g~-----------------~~~~ahag~~~~-~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                      |.              .+++++++.                 .+.++|++ .|. .|+||+.   .+++++..|..+.+
T Consensus       137 g~~G~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha~-~p~~~g~nAi~---~~~~~i~~l~~~~~  211 (369)
T 2f7v_A          137 DPRCIAAFLARGLPYDAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHAS-GKQDPAASALH---QAMRWGGKALDHVE  211 (369)
T ss_dssp             SCCHHHHHHTTCCCCSEEEECCCSTTCBBCCBCCEEEEEEEEECCCC-------CTTSCHHH---HHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHhcCCCCCEEEECCCCCCcceeecCceEEEEEEEeeeCcccC-CCCcCCCCHHH---HHHHHHHHHHhhhh
Confidence            21              133333321                 12389999 678 8999999   99999999887754

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}

Probab=99.91  E-value=2.7e-24  Score=188.94  Aligned_cols=178  Identities=15%  Similarity=0.190  Sum_probs=131.5

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEE
Q psy17305          9 AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGN   88 (223)
Q Consensus         9 ~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~   88 (223)
                      +.+..+++.+.++++++|++|++|||+|+.      +.++++||.++|+++|++++.+..+... ..+     ..|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~L~~ips~s~~------E~~~~~~l~~~l~~~G~~v~~~~~~~~~-~~~-----~~nvia~   80 (396)
T 3rza_A           13 ENLYFQGMINEQRLLNTFLELVQIDSETGN------ESTIQPILKEKFIALGLDVKEDEAAKHP-KLG-----ANNLVCT   80 (396)
T ss_dssp             ------CCSCHHHHHHHHHHHHTSCCBTTC------TTTHHHHHHHHHHHTTCEEEECSGGGST-TCS-----SCCEEEE
T ss_pred             cceeEEEeecHHHHHHHHHHHeecCCCCcC------HHHHHHHHHHHHHHCCCEEEEecccccc-CCC-----CceEEEE
Confidence            456778888899999999999999999984      5689999999999999998877632100 001     1599999


Q ss_pred             cCCC---CCccEEEEEeccccCCCCCCCCCCCCCCceeeeC-CeEEecCC----CCCchhHHHHHHHHHHHHHccCCCce
Q psy17305         89 LGND---KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKD-EKLYGRGA----SDDKGPVLGWLHAIEAFQQTKKNVPV  160 (223)
Q Consensus        89 ~~~~---~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~-~~lyGrG~----~D~K~gv~~~l~al~~l~~~~~~~~~  160 (223)
                      +++.   ++.|+|+|.|||||||++.       ||.+.+++ |++||||+    +|||+|++++|.|++.|++.+. +++
T Consensus        81 ~~g~~~~~~~~~i~l~aH~D~vp~g~-------~~~p~~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~  152 (396)
T 3rza_A           81 MNSTIEEGEVPKLYLTSHMDTVVPAI-------NVKPIVKDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHG  152 (396)
T ss_dssp             ECCCCC---CCCEEEEEECCBCSSCS-------SCCCEECTTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHTC-CCC
T ss_pred             ECCcCCCCCCCeEEEEEECCccCCCC-------CcceEEecCCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCC
Confidence            8543   4578999999999999873       34445665 99999999    6999999999999999998875 567


Q ss_pred             eeEEeccc---------c-----------eeeccCcc-------------------cCCCCcCCCCccceecccchhhHH
Q psy17305        161 NIKEVTGK---------N-----------VLLLPMGA-------------------SDDGAHSQNEKIDVRNYIEGTKLL  201 (223)
Q Consensus       161 ~i~~~~g~---------~-----------~~~~~~g~-------------------~~~~ahag~~~~~g~~ai~g~~~~  201 (223)
                      +|.+++..         .           ++.++++.                   .+.++|++ .|+.|+||+.   .+
T Consensus       153 ~v~~~~~~~EE~g~~Ga~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~g~~~~~i~v~G~~~Ha~-~p~~g~nai~---~~  228 (396)
T 3rza_A          153 QIQFVITVGEESGLIGAKELNSELLDADFGYAIDASADVGTTVVGAPTQMLISAKIIGKTAHAS-TPKEGVSAIN---IA  228 (396)
T ss_dssp             CEEEEEESCGGGTSHHHHHCCGGGCCCSEEEEEEESSCTTCEEEEECEEEEEEEEEECBCCBTT-SGGGSBCHHH---HH
T ss_pred             CEEEEEEcccccccHhHhhhchhhcccceEEEEecCCCcceEEEcCCceEEEEEEEEeEecCCC-CccccccHHH---HH
Confidence            77654321         1           12222211                   12489999 8999999999   99


Q ss_pred             HHHHHHHHh
Q psy17305        202 AAYLYEISK  210 (223)
Q Consensus       202 a~~~~~l~~  210 (223)
                      ++.+..|..
T Consensus       229 ~~~i~~l~~  237 (396)
T 3rza_A          229 AKAISRMKL  237 (396)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhccc
Confidence            999988754

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}

Probab=99.91  E-value=5e-24  Score=185.59  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCccE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKHT   97 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~~   97 (223)
                      .++++++|++|+++||+|+      ++.++++||.++|+++|++++.+..+... ..+     ..|+++++.+. ++.|+
T Consensus         5 ~~~~~~~l~~l~~~ps~s~------~e~~~~~~l~~~l~~~G~~v~~~~~~~~~-~~~-----~~nv~a~~~g~~~~~~~   72 (373)
T 3gb0_A            5 QERLVNEFMELVQVDSETK------FEAEICKVLTKKFTDLGVEVFEDDTMAVT-GHG-----AGNLICTLPATKDGVDT   72 (373)
T ss_dssp             HHHHHHHHHHHHTSCCBTT------CCHHHHHHHHHHHHHTTCEEEECSCHHHH-CCS-----SCCEEEEECCSSTTCCC
T ss_pred             HHHHHHHHHHHhcccCCCc------cHHHHHHHHHHHHHHCCCEEEEecccccc-CCC-----ceeEEEEecCCCCCCCE
Confidence            4789999999999999998      46789999999999999998876541000 001     15999998543 45789


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCC----CCCchhHHHHHHHHHHHHHccCCCceeeEEeccc-----
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA----SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK-----  168 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~----~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~-----  168 (223)
                      |+|.|||||||++.       ||.+.+++|++||||+    +|||+|++++|.+++.|++.+. ++++|.+++..     
T Consensus        73 v~l~aH~D~vp~~~-------~~~p~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g  144 (373)
T 3gb0_A           73 IYFTSHMDTVVPGN-------GIKPSIKDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESG  144 (373)
T ss_dssp             EEEEEECCBCSSCS-------SCCCEEETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGT
T ss_pred             EEEEEECcccCCCC-------CcCcEEECCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccC
Confidence            99999999999863       4566889999999999    6999999999999999999875 56777654321     


Q ss_pred             ----c-----------eeeccCcc-------------------cCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        169 ----N-----------VLLLPMGA-------------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       169 ----~-----------~~~~~~g~-------------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                          .           ++.++++.                   .+.++|++..|+.|+||+.   .+++.+..|..
T Consensus       145 ~~Ga~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nai~---~~~~~i~~l~~  217 (373)
T 3gb0_A          145 LVGAKALDRERITAKYGYALDSDGKVGEIVVAAPTQAKVNAIIRGKTAHAGVAPEKGVSAIT---IAAKAIAKMPL  217 (373)
T ss_dssp             SHHHHHSCGGGCCCSEEEEEEECSCTTEEEEEECEEEEEEEEEECBCCBTTTCGGGSBCHHH---HHHHHHTTSCC
T ss_pred             chhhhhhCHHhcCCCEEEEEcCCCCCCeEEEcCCCcEEEEEEEEeEecCCCCChhhCcCHHH---HHHHHHHhccc
Confidence                1           12222211                   1248999999999999999   99998887754

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}

Probab=99.91  E-value=7.7e-24  Score=184.16  Aligned_cols=163  Identities=20%  Similarity=0.250  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT   97 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~   97 (223)
                      .+++++++++|+++||+|+      ++.++++||.++|+++|++ ++....+             +|++++++++ ++|+
T Consensus        12 ~~~~~~~~~~l~~~ps~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~-------------~~~~a~~~~~-~~~~   71 (369)
T 3tx8_A           12 LGDPIVLTQRLVDIPSPSG------QEKQIADEIEDALRNLNLPGVEVFRFN-------------NNVLARTNRG-LASR   71 (369)
T ss_dssp             CSCHHHHHHHHHSSCCBTT------CTHHHHHHHHHHHHTTTCTTCEEEEET-------------TEEEEECCCC-CSCE
T ss_pred             HHHHHHHHHHHhcCCCCCc------cHHHHHHHHHHHHHhcCCCCcEEeccC-------------CcEEEEecCC-CCCe
Confidence            4678999999999999998      4578999999999999883 5554433             5999998654 4689


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK---  168 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~---  168 (223)
                      |+|.|||||||+++       ||.+.+++|++||||++|||+|++++|+|+++|++. ..++++|.+++      |+   
T Consensus        72 v~l~~H~D~vp~~~-------~~~~~~~~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~  143 (369)
T 3tx8_A           72 VMLAGHIDTVPIAD-------NLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLN  143 (369)
T ss_dssp             EEEEEECCBSCCCS-------CCSCEECSSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSC
T ss_pred             EEEEcccCccCCCC-------CCCCeEECCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccc
Confidence            99999999999973       566688999999999999999999999999999874 35677776443      21   


Q ss_pred             ----------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        169 ----------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       169 ----------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                                      .++.++++.                 .+.++|++ .|..|+||+.   .+++++..|..+..
T Consensus       144 G~~~~~~~~~~~~~~~~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Ha~-~p~~g~nAi~---~~a~~i~~l~~~~~  217 (369)
T 3tx8_A          144 GLGHIRDEHPEWLAADLALLGEPTGGWIEAGCQGNLRIKVTAHGVRAHSA-RSWLGDNAMH---KLSPIISKVAAYKA  217 (369)
T ss_dssp             HHHHHHHHCGGGGCCSEEEECCCCTTCEEESBCEEEEEEEEEECBCCBTT-SGGGSBCTGG---GGHHHHHHHHHCCC
T ss_pred             cHHHHHHhcccccCCCEEEEeCCCCCceeeecceEEEEEEEEeeeccccC-CCCcCcCHHH---HHHHHHHHHHhhcc
Confidence                            022223221                 12489998 4899999999   99999999887753

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A

Probab=99.91  E-value=6.7e-24  Score=187.81  Aligned_cols=175  Identities=11%  Similarity=0.169  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhcH--HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305          7 YLAEISEYVESNK--NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus         7 ~~~~~~~~i~~~~--~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      +++++.++++++.  +++++++++|++|||+|+      ++.++++||.++|+++|++++.+...             +|
T Consensus        13 ~~~~i~~~~~~~~~~~~~i~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~v~~~~~~-------------~~   73 (418)
T 1xmb_A           13 IQTKLLEFAKSPEVFDWMVKIRRKIHENPELGY------EELETSKLIRSELELIGIKYRYPVAI-------------TG   73 (418)
T ss_dssp             ---CHHHHHHSHHHHHHHHHHHHHHHHSCCCTT------CCHHHHHHHHHHHHHHTCCEEEEETT-------------TE
T ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHHcCCeeEeccCC-------------cE
Confidence            4556788889888  999999999999999998      46789999999999999998876532             59


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      +++++++..+ |+|+|.|||||||.++   |..+||.. ..+|++||||.   |+|++++|.|+++|++.+..++++|.+
T Consensus        74 l~a~~~~~~~-~~i~l~aH~D~vp~~~---~~~~pf~~-~~~g~~~g~G~---d~~~a~~l~a~~~l~~~~~~~~~~v~~  145 (418)
T 1xmb_A           74 VIGYIGTGEP-PFVALRADMDALPIQE---GVEWEHKS-KIAGKMHACGH---DGHVTMLLGAAKILHEHRHHLQGTVVL  145 (418)
T ss_dssp             EEEEEESSSS-CEEEEEEECCCBSCCC---CCCSTTCC-SSTTCBCCSSH---HHHHHHHHHHHHHHHHTGGGCSSEEEE
T ss_pred             EEEEEcCCCC-CEEEEEecccccCCCC---CCCCCccc-CCCCceEeCCc---hHHHHHHHHHHHHHHhccccCCceEEE
Confidence            9999864433 8999999999999873   88999986 56899999995   699999999999999988777788875


Q ss_pred             ecc-----c---------------c-eeec------cCcc-------------------cCCCCcCCCCccceecccchh
Q psy17305        165 VTG-----K---------------N-VLLL------PMGA-------------------SDDGAHSQNEKIDVRNYIEGT  198 (223)
Q Consensus       165 ~~g-----~---------------~-~~~~------~~g~-------------------~~~~ahag~~~~~g~~ai~g~  198 (223)
                      ++.     .               + ++.+      +.|.                   .+.++|++ .|..|+||+.  
T Consensus       146 ~~~~~EEg~~G~~~~~~~g~~~~~d~~i~~~~~~~~~~g~~~~~~~~~~~g~~~~~i~v~G~~~Has-~P~~g~nAi~--  222 (418)
T 1xmb_A          146 IFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAA-IPQHTIDPVV--  222 (418)
T ss_dssp             EEECCTTTTCHHHHHHHTTTTTTEEEEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC----------CCHHHH--
T ss_pred             EEeccccccccHHHHHHcCCcCCCCEEEEEecCCCCCCceeEeeeccccccceeEEEEEEecCcccC-CCccCCCHHH--
Confidence            542     1               0 1111      0110                   02389999 7999999999  


Q ss_pred             hHHHHHHHHHHhhh
Q psy17305        199 KLLAAYLYEISKVT  212 (223)
Q Consensus       199 ~~~a~~~~~l~~l~  212 (223)
                       .+++.+..|..+.
T Consensus       223 -~~a~~i~~l~~~~  235 (418)
T 1xmb_A          223 -AASSIVLSLQQLV  235 (418)
T ss_dssp             -HHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHH
Confidence             9999999998764

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A

Probab=99.91  E-value=6.2e-24  Score=187.74  Aligned_cols=174  Identities=17%  Similarity=0.220  Sum_probs=133.6

Q ss_pred             HHHHHHHHHhhccCCCCCCCC----CchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCC-
Q psy17305         20 NKFIENLKEAVAIESVSSSVQ----HRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDK-   93 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~----~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~-   93 (223)
                      ++++++|++|++|||+|+...    +++++.++++||.++|+++|++ ++.+..              .|+++++++.. 
T Consensus         2 ~~~~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G~~~~~~~~~--------------~nvia~~~g~~~   67 (417)
T 1fno_A            2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEK--------------GTLMATLPANVE   67 (417)
T ss_dssp             CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTT--------------CCEEEEECCSSC
T ss_pred             hHHHHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcCCCeEEECCC--------------ceEEEEECCCCC
Confidence            357889999999999997431    3446889999999999999998 665432              49999985432 


Q ss_pred             -CccEEEEEeccccCCCCCCCCCCCCCC-----cee-e---------------------eCCeEEecCC----CCCchhH
Q psy17305         94 -AKHTVLVYGHLDVQPAEKEDGWNTEPF-----VLT-L---------------------KDEKLYGRGA----SDDKGPV  141 (223)
Q Consensus        94 -~~~~ill~~H~DtVp~~~~~~w~~~P~-----~~~-~---------------------~~~~lyGrG~----~D~K~gv  141 (223)
                       +.|+|+|.|||||||.+.  .|..+||     ... +                     .|+++||||+    .|||+|+
T Consensus        68 ~~~~~i~l~aH~D~Vp~~~--~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~gd~~l~grGat~l~~D~K~g~  145 (417)
T 1fno_A           68 GDIPAIGFISHVDTSPDFS--GKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGV  145 (417)
T ss_dssp             SCCCCEEEEEECCBCTTSC--CSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHH
T ss_pred             CCCCceEEEEeccccCCCC--CCCCCceEEecCCCCeecccccccccchhhcchhhhhcCCcEEEcCCccccccccHHhH
Confidence             368999999999999863  5988886     332 2                     3679999998    9999999


Q ss_pred             HHHHHHHHHHHHccCCCceeeEEeccc--------c-----------eeeccCccc------------------CCCCcC
Q psy17305        142 LGWLHAIEAFQQTKKNVPVNIKEVTGK--------N-----------VLLLPMGAS------------------DDGAHS  184 (223)
Q Consensus       142 ~~~l~al~~l~~~~~~~~~~i~~~~g~--------~-----------~~~~~~g~~------------------~~~aha  184 (223)
                      +++|+|++.|++.+ .++++|.+++..        .           ++.+..+..                  +.++|+
T Consensus       146 a~~l~a~~~l~~~~-~~~~~v~~~~~~~EE~g~Ga~~~~~~~~~~d~~i~~d~~~~g~i~~~~~g~~~~~i~~~G~~~Hs  224 (417)
T 1fno_A          146 AEIMTALAVLKGNP-IPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHP  224 (417)
T ss_dssp             HHHHHHHHHHHSSS-CCCCCEEEEEESCGGGTCTTTTCCHHHHCCSEEEECCCCSTTBEECCBCEEEEEEEEEECBCCCG
T ss_pred             HHHHHHHHHHHhCC-CCCCcEEEEEEeccccCCChhhhchhhcCCCEEEEeCCCCcCeeEEecCCceeEEEEEEeeccCC
Confidence            99999999999988 677777755321        1           222222111                  237899


Q ss_pred             CCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        185 QNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       185 g~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                      +..|..|+||+.   .+++.+..|..+..
T Consensus       225 ~~~p~~g~nAi~---~~a~~i~~l~~~~~  250 (417)
T 1fno_A          225 GTAKGVMVNALS---LAARIHAEVPADEA  250 (417)
T ss_dssp             GGCTTTCBCHHH---HHHHHHHTSCTTSS
T ss_pred             CCCccccCCHHH---HHHHHHHhhhccCC
Confidence            988999999999   99999998877754

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}

Probab=99.90  E-value=5.3e-24  Score=185.29  Aligned_cols=165  Identities=23%  Similarity=0.271  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC--CCCcc
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN--DKAKH   96 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~--~~~~~   96 (223)
                      .+++++++++|++|||+|..+.   ++.++++||.++|+++|++++.+.               .|+++.+.+  +.+.|
T Consensus         5 ~~~~~~~l~~l~~ips~s~~~~---~e~~~~~~l~~~l~~~G~~~~~~~---------------~~~~~~~~~~~~~~~~   66 (364)
T 2rb7_A            5 MQHIVELTSDLIRFPSMHSRPE---QISRCAGFIMDWCAQNGIHAERMD---------------HDGIPSVMVLPEKGRA   66 (364)
T ss_dssp             HHHHHHHHHHHHTSCCCTTCHH---HHHHHHHHHHHHHHHTTCCCEEEE---------------ETTEEEEEECSBTTEE
T ss_pred             HHHHHHHHHHHHcCCCCCCCcc---hHHHHHHHHHHHHHHcCCeEEEec---------------CCCceEEEEEcCCCCC
Confidence            3678999999999999995322   688999999999999999988754               255565531  23468


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCC---cee--eEEec-----
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNV---PVN--IKEVT-----  166 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~---~~~--i~~~~-----  166 (223)
                      +|+|.|||||||.      +.+||.+.+++|++||||++|||+|++++|+|++.|++.+.++   +++  |.+++     
T Consensus        67 ~i~l~aH~D~vp~------~~~p~~~~~~~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE  140 (364)
T 2rb7_A           67 GLLLMAHIDVVDA------EDDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEE  140 (364)
T ss_dssp             EEEEEEECCCCCC------CGGGGSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGG
T ss_pred             eEEEECccCcCCC------CCCCCccEEECCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccc
Confidence            9999999999986      3689999999999999999999999999999999999887555   345  65432     


Q ss_pred             --c---c----------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305        167 --G---K----------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       167 --g---~----------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l  211 (223)
                        |   .          .++.++.+..                  +.++|++. |+.|+||+.   .+++.+..|..+
T Consensus       141 ~~g~~G~~~~~~~~~~d~~i~~d~~~p~~i~~~~~G~~~~~i~v~G~~~Ha~~-P~~g~nAi~---~~~~~i~~l~~~  214 (364)
T 2rb7_A          141 IGGMNGAAKALPLIRADYVVALDGGNPQQVITKEKGIIDIKLTCTGKAAHGAR-PWMGVNAVD---LLMEDYTRLKTL  214 (364)
T ss_dssp             GTSTTTHHHHGGGCEEEEEEECSSSBTTEEEEEECEEEEEEEEEECBCEETTS-GGGSBCHHH---HHHHHHHHHHTT
T ss_pred             cCchhhHHHHHhcCCCCEEEEccCCcccceEEEeeeEEEEEEEEEeecccCCC-CCCCcCHHH---HHHHHHHHHHhh
Confidence              1   1          1233222211                  24899987 889999999   999999998876

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}

Probab=99.90  E-value=1.1e-23  Score=187.97  Aligned_cols=192  Identities=15%  Similarity=0.110  Sum_probs=128.6

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEec--CCC---CCC---------
Q psy17305          9 AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDI--GNQ---TLP---------   74 (223)
Q Consensus         9 ~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~--~~~---~~~---------   74 (223)
                      .++.+++++..++++++.++|+++|+.++      +|.+.+++|.++|+++|+++++...  ...   .++         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lh~~Pe~~~------~E~~t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~   76 (445)
T 3io1_A            3 LQLDEYLRQLAPSMTQWRRDFHLHAESGW------LEFRTASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAF   76 (445)
T ss_dssp             CCHHHHHHTTHHHHHHHHHHHHHTCCCTT------CCHHHHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCCC------cHHHHHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhh
Confidence            45778899999999999999999999998      5678999999999999999876420  000   000         


Q ss_pred             -----CC---CC---CC-CCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCce---eeeCCeEEecCCCCCch
Q psy17305         75 -----NG---ES---IK-YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL---TLKDEKLYGRGASDDKG  139 (223)
Q Consensus        75 -----~g---~~---~~-~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~---~~~~~~lyGrG~~D~K~  139 (223)
                           .|   ..   .+ ..+||+++++++.++|+|+|.+||||||+++...|.++||..   ...+|++||||.   ++
T Consensus        77 ~~~~~~g~~~~~~~~~~~~~~~vva~~~~~~~g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~~~G~~h~cGh---d~  153 (445)
T 3io1_A           77 ERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTLAFRVDMDALDLNEQHDDSHRPHRDHFASCNAGMMHACGH---DG  153 (445)
T ss_dssp             HHHHTTTCCTTTGGGGTTTCCCEEEEEECSSCCCEEEEEEECCCCCC-------------------------CTT---CT
T ss_pred             hhhccccccccccccccCCCCEEEEEEeCCCCCCEEEEEEecCCcCCCCCCCCCcCccccccccCCCCceEecCc---hH
Confidence                 00   00   00 126999999655446899999999999998777899999986   567899999997   58


Q ss_pred             hHHHHHHHHHHHHHccCCCceeeEEeccc---------------------ceeeccCc----------------------
Q psy17305        140 PVLGWLHAIEAFQQTKKNVPVNIKEVTGK---------------------NVLLLPMG----------------------  176 (223)
Q Consensus       140 gv~~~l~al~~l~~~~~~~~~~i~~~~g~---------------------~~~~~~~g----------------------  176 (223)
                      +++++|.|++.|++.+..++++|.+++..                     .++.++++                      
T Consensus       154 ~~a~~l~aa~~L~~~~~~~~g~v~l~f~p~EE~~~Ga~~~i~~g~~~~~d~~~~~h~~~~~~~g~i~~~~~g~~a~~~~~  233 (445)
T 3io1_A          154 HTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAMVAAGVVDDVDYFTAIHIGTGVPAGTVVCGGDNFMATTKFD  233 (445)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTCHHHHHHHTTTTTTCSEEEEEEEEEEEETTBEESCCCCBCEEEEEE
T ss_pred             HHHHHHHHHHHHHhCcCcCCceEEEEEeccccccchHHHHHHcCCccccceeEEEeccCCCCCCeEEEecCCeeEEEEEE
Confidence            99999999999999877788888765421                     12222211                      


Q ss_pred             --ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305        177 --ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT  212 (223)
Q Consensus       177 --~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~  212 (223)
                        +.+.++|+|..|..|+||+.   .+++.+..|+.+.
T Consensus       234 i~v~Gk~~HaGs~P~~g~nAi~---~aa~~i~~l~~l~  268 (445)
T 3io1_A          234 VQFSGVAAHAGGKPEDGRNALL---AAAQAALGLHAIP  268 (445)
T ss_dssp             EEEECCCSSTTCCGGGCCCHHH---HHHHHHHHHHTCC
T ss_pred             EEEEeecCCCCCCCcCCcCHHH---HHHHHHHHHHHHH
Confidence              01348999999999999999   9999999998874

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}

Probab=99.90  E-value=1.2e-23  Score=189.81  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=129.5

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC---CC
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND---KA   94 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~---~~   94 (223)
                      +.+++++++++|++|||+|++      +.++++||.++|+++|++++.+..              .|+++++++.   .+
T Consensus        12 ~~~~~~~~~~~L~~ips~s~~------e~~~~~~l~~~l~~~G~~v~~~~~--------------~nv~a~~~g~~g~~~   71 (490)
T 3mru_A           12 SPAPLWQFFDKICSIPHPSKH------EEALAQYIVTWATEQGFDVRRDPT--------------GNVFIKKPATPGMEN   71 (490)
T ss_dssp             SSHHHHHHHHHHHHSCCBTTC------CTTHHHHHHHHHHHTTCEEEECTT--------------CCEEEEECCCTTCTT
T ss_pred             CHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHcCCEEEEcCC--------------CeEEEEEcCCCCCCC
Confidence            347899999999999999984      468999999999999998876432              4899998542   35


Q ss_pred             ccEEEEEeccccCCCCCCC---CCCCCCCceeeeCCeEEecCCC---CCchhHHHHHHHHHHHHHccCCCceeeEEec--
Q psy17305         95 KHTVLVYGHLDVQPAEKED---GWNTEPFVLTLKDEKLYGRGAS---DDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT--  166 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~---~w~~~P~~~~~~~~~lyGrG~~---D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~--  166 (223)
                      .|+|+|.|||||||.++.+   .|..+||.+.+++|++||||+.   |||+|++++|++++   +.. .++++|.+++  
T Consensus        72 ~~~v~l~aH~D~vp~~~~~~~~~w~~~p~~~~~~~g~l~g~G~~lgaD~k~g~a~~l~~l~---~~~-~~~~~v~~~~~~  147 (490)
T 3mru_A           72 KKGVVLQAHIDMVPQKNEDTDHDFTQDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVLA---SKE-IKHGPIEVLLTI  147 (490)
T ss_dssp             CCCEEEEEECCBCCCBCTTSCCCTTTCCCCEEEETTEEEETTBCCCHHHHTTHHHHHHHHH---CSS-CCCCSEEEEEES
T ss_pred             CCeEEEEeccCCCCCCCCCcccccccCCceEEeeCCeEecCCCccCCCCHHHHHHHHHHHH---hCC-CCCCCEEEEEEc
Confidence            7899999999999997543   7999999999999999999996   99999999998763   322 3456666443  


Q ss_pred             ----cc---c-----------eeeccC-----------------------------cc-------cC-CCCcCCCCccce
Q psy17305        167 ----GK---N-----------VLLLPM-----------------------------GA-------SD-DGAHSQNEKIDV  191 (223)
Q Consensus       167 ----g~---~-----------~~~~~~-----------------------------g~-------~~-~~ahag~~~~~g  191 (223)
                          |.   .           .+.+..                             |.       .+ .++|++..|..|
T Consensus       148 ~EE~g~~Ga~~~~~~~~~~~~~~~~d~~~~g~~~~g~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~gHs~~~p~~g  227 (490)
T 3mru_A          148 DEEAGMTGAFGLEAGWLKGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTG  227 (490)
T ss_dssp             CSSSTTGGGGTCCSSSCCSSEEEECCCCCTTCCEEEECEEEEEEEEEECCEECCCTTEEEEEEEEECCCCEETTTSSSSC
T ss_pred             ccccccHhHHHhhhcccCCCEEEEcCCCCCCeEEEecCCccceEEEeeeeeeccCCCceEEEEEEECCCCcccccccccC
Confidence                21   0           111110                             10       12 479999999999


Q ss_pred             e-cccchhhHHHHHHHHHHh
Q psy17305        192 R-NYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       192 ~-~ai~g~~~~a~~~~~l~~  210 (223)
                      + ||+.   .+++.+..|..
T Consensus       228 ~~nai~---~~~~~l~~l~~  244 (490)
T 3mru_A          228 RGNANK---LIGRFLAGHAQ  244 (490)
T ss_dssp             CCCHHH---HHHHHHHHHTT
T ss_pred             CcCHHH---HHHHHHHHHHh
Confidence            9 9999   99999998865

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1

Probab=99.89  E-value=4.1e-23  Score=182.00  Aligned_cols=166  Identities=9%  Similarity=0.101  Sum_probs=123.1

Q ss_pred             hcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCcc
Q psy17305         17 SNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKH   96 (223)
Q Consensus        17 ~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~   96 (223)
                      +..+++++++++|++|||+|+      ++.++++||.++|+++|++++.+..+            .+|+++++++..+.|
T Consensus        29 ~~~~~~i~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~v~~~~~~------------~~nv~a~~~g~~~~~   90 (404)
T 1ysj_A           29 AFHTRLINMRRDLHEHPELSF------QEVETTKKIRRWLEEEQIEILDVPQL------------KTGVIAEIKGREDGP   90 (404)
T ss_dssp             HHHHHHHHHHHHHHHSCCCTT------CCHHHHHHHHHHHHHTTCEECCCTTC------------SSCEEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCC------ChHHHHHHHHHHHHHcCCceEEeccC------------CceEEEEEeCCCCCC
Confidence            345789999999999999998      35689999999999999987665443            159999985433368


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc--------
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK--------  168 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~--------  168 (223)
                      +|+|.|||||||.++   |+.+||... .+|++||||.   |++++++|+|++.|++.+..++++|.+++..        
T Consensus        91 ~i~l~~H~D~vp~~~---~~~~Pf~~~-~~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~G~  163 (404)
T 1ysj_A           91 VIAIRADIDALPIQE---QTNLPFASK-VDGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAAGA  163 (404)
T ss_dssp             EEEEEEECCCBSCCC---CCCCTTCCS-STTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTCHH
T ss_pred             EEEEEEecccccCCC---CCCCCcccC-CCCceEcCcC---hHHHHHHHHHHHHHHhccccCCceEEEEEecccccchhH
Confidence            999999999999873   999999875 6899999994   8999999999999999876777788765421        


Q ss_pred             ------------c-eeec--cCcc-----------------------cCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305        169 ------------N-VLLL--PMGA-----------------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK  210 (223)
Q Consensus       169 ------------~-~~~~--~~g~-----------------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~  210 (223)
                                  + ++.+  +++.                       .+.++|++ .|..|+||+.   .+++.+..|..
T Consensus       164 ~~~~~~g~~~~~d~~i~~h~ep~~~~g~v~~~~g~~~~g~~~~~i~v~G~~~Has-~P~~g~nAi~---~~~~~i~~l~~  239 (404)
T 1ysj_A          164 RKVLEAGVLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHAS-IPNNSIDPIA---AAGQIISGLQS  239 (404)
T ss_dssp             HHHHHTTTTTTEEEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC---------CCCCHHH---HHHHHHHHHC-
T ss_pred             HHHHhcCCCcCCCEEEEEecCCCCCCceEEeccChhhcccceEEEEEEccCcccc-CcccCCCHHH---HHHHHHHHHHH
Confidence                        1 1121  3321                       02388996 6889999999   99999998876


Q ss_pred             h
Q psy17305        211 V  211 (223)
Q Consensus       211 l  211 (223)
                      +
T Consensus       240 ~  240 (404)
T 1ysj_A          240 V  240 (404)
T ss_dssp             -
T ss_pred             H
Confidence            5

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}

Probab=99.88  E-value=1.5e-22  Score=182.37  Aligned_cols=167  Identities=16%  Similarity=0.231  Sum_probs=125.7

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC---CC
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND---KA   94 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~---~~   94 (223)
                      +.+++++++++|++|||+|+      .+.++++||.++|+++|++++.+..              .|+++++++.   ++
T Consensus         9 ~~~~~~~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~~~~~~~--------------~nv~a~~~g~~g~~~   68 (487)
T 2qyv_A            9 QPKLLWQWFDQICAIPHPSY------KEEQLAQFIINWAKTKGFFAERDEV--------------GNVLIRKPATVGMEN   68 (487)
T ss_dssp             SSHHHHHHHHHHHHSCCBTT------CCHHHHHHHHHHHHHTTCEEEECTT--------------CCEEEEECCCTTCTT
T ss_pred             CHHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEeCCCCCCCC
Confidence            35789999999999999997      3568999999999999998876542              3899998542   34


Q ss_pred             ccEEEEEeccccCCCCCCC---CCCCCCCceeeeCCeEEecCCC---CCchhHHHHHHHHHHHHHccCCCceeeEEeccc
Q psy17305         95 KHTVLVYGHLDVQPAEKED---GWNTEPFVLTLKDEKLYGRGAS---DDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK  168 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~---~w~~~P~~~~~~~~~lyGrG~~---D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~  168 (223)
                      .|+|+|.|||||||.+...   .|..+||.+.+++|++||||+.   |||+|++++|++++.   .+. ++++|.+++..
T Consensus        69 ~~~i~l~aH~D~vp~~~~~~~~~w~~~p~~~~~~dg~l~g~G~~lgaD~k~g~a~~l~a~~~---~~~-~~~~v~~~~~~  144 (487)
T 2qyv_A           69 RKPVVLQAHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASALAVLES---NDI-AHPELEVLLTM  144 (487)
T ss_dssp             BCCEEEEEESCBCCC----------CCCCCEEECSSEEEETTBCCCHHHHHHHHHHHHHHHC---SSS-CCSSEEEEEES
T ss_pred             CCeEEEEccCCccCCCCCCCccccccCCeeEEeeCCEEEeCCCCcCCcCHHHHHHHHHHHHh---CCC-CCCCEEEEEEe
Confidence            6899999999999997543   7999999999999999999997   999999999999863   332 45666654311


Q ss_pred             --------------------ceeeccC--------c---------------------------ccC-CCCcCCCCccce-
Q psy17305        169 --------------------NVLLLPM--------G---------------------------ASD-DGAHSQNEKIDV-  191 (223)
Q Consensus       169 --------------------~~~~~~~--------g---------------------------~~~-~~ahag~~~~~g-  191 (223)
                                          .++.+++        |                           ..+ .++|++..|..| 
T Consensus       145 ~EE~g~~Ga~~~~~~~~~~d~~~~~d~~~~~~i~~g~~g~~~~~~~~~~~~~~~~~g~~~~i~v~G~~~~Hsg~~~~~g~  224 (487)
T 2qyv_A          145 TEERGMEGAIGLRPNWLRSEILINTDTEENGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRGGHSGVDIHTGR  224 (487)
T ss_dssp             CTTTTCHHHHTCCSSCCCCSEEEECCCCCTTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCCCBTTTTTTSCC
T ss_pred             ccccCCHHHHHHHHhccCCCEEEEEccCCCCeEEEeccCCcceeeeccccccccCCCeEEEEEEEccCCccCCcccccCC
Confidence                                0111111        1                           112 478999998887 


Q ss_pred             ecccchhhHHHHHHHHHHhh
Q psy17305        192 RNYIEGTKLLAAYLYEISKV  211 (223)
Q Consensus       192 ~~ai~g~~~~a~~~~~l~~l  211 (223)
                      .||+.   .+++.+..|..+
T Consensus       225 ~nAi~---~~~~~i~~l~~~  241 (487)
T 2qyv_A          225 ANAIK---VLLRFLAELQQN  241 (487)
T ss_dssp             CCHHH---HHHHHHHHHHHH
T ss_pred             CCHHH---HHHHHHHHHhhc
Confidence            69999   999999988775

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}

Probab=99.82  E-value=1.5e-20  Score=165.22  Aligned_cols=167  Identities=14%  Similarity=0.187  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305          7 YLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL   86 (223)
Q Consensus         7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~   86 (223)
                      +++++.+++++..+++++++++|+++|++|+      ++.++++||.++|+++|++++++..+.           .+|++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~l~~~pe~s~------~E~~~~~~i~~~l~~~G~~v~~~~~g~-----------~~~vi   65 (394)
T 3ram_A            3 EKQQILDYIETNKYSYIEISHRIHERPELGN------EEIFASRTLIDRLKEHDFEIETEIAGH-----------ATGFI   65 (394)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHSCCCTT------CCHHHHHHHHHHHHHTTCEEEEEETTE-----------EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHHcCCeEEeCCCCC-----------ceEEE
Confidence            5678999999999999999999999999998      467899999999999999998876431           15999


Q ss_pred             EEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         87 GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        87 a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      ++++++.++|+|+|.|||||||.                  +++++|. |+++  ++++.|++.|++.+..++++|.+++
T Consensus        66 a~~~g~~~g~~i~l~ah~D~vpg------------------~~ha~G~-d~~~--a~~l~aa~~L~~~~~~~~g~v~~~f  124 (394)
T 3ram_A           66 ATYDSGLDGPAIGFLAEYDALPG------------------LGHACGH-NIIG--TASVLGAIGLKQVIDQIGGKVVVLG  124 (394)
T ss_dssp             EEEECSSSSCEEEEEECCCCCTT------------------TSSTTCH-HHHH--HHHHHHHHHHHTTHHHHCSEEEEEE
T ss_pred             EEEeCCCCCCEEEEEEecccCCC------------------cceECCc-cHHH--HHHHHHHHHHHHhHhhCCceEEEEE
Confidence            99865444689999999999993                  2456664 6664  5677788888876655677776543


Q ss_pred             ----------ccceeeccCccc--------------------------------CCCCcCCCCccceecccchhhHHHHH
Q psy17305        167 ----------GKNVLLLPMGAS--------------------------------DDGAHSQNEKIDVRNYIEGTKLLAAY  204 (223)
Q Consensus       167 ----------g~~~~~~~~g~~--------------------------------~~~ahag~~~~~g~~ai~g~~~~a~~  204 (223)
                                |....+++.|..                                +.++|++..|+.|+||+.   .+++.
T Consensus       125 ~~~EE~~~~~Ga~~~~~~~g~~~~~d~~~~~h~~~~~~~~~~~~g~~~~~i~v~Gk~~Ha~~~P~~g~nAi~---~a~~~  201 (394)
T 3ram_A          125 CPAEEGGENGSAKASYVKAGVIDQIDIALMIHPGNETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALD---AMISY  201 (394)
T ss_dssp             CCCTTCCTTCCHHHHHHHHTGGGGCSEEECCEEESSBBCCCCBCEEEEEEEEEECBCCBHHHHGGGCBCHHH---HHHHH
T ss_pred             ECCccCCCCCchHHHHHHcCCcccCCEEEEECCccccCCCccccceeEEEEEEEccccccCCCCcCCCCHHH---HHHHH
Confidence                      111011222210                                238999988999999999   99999


Q ss_pred             HHHHHhhhhh
Q psy17305        205 LYEISKVTQA  214 (223)
Q Consensus       205 ~~~l~~l~~~  214 (223)
                      +..|..+++.
T Consensus       202 i~~l~~l~~~  211 (394)
T 3ram_A          202 FNGVAQLRQH  211 (394)
T ss_dssp             HHHHHHHGGG
T ss_pred             HHHHHHHHhh
Confidence            9999888653

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A

Probab=99.82  E-value=1.2e-19  Score=160.32  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             HHHHhcHHHHHHHHHHhhccCCCCCC----CCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEE
Q psy17305         13 EYVESNKNKFIENLKEAVAIESVSSS----VQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGN   88 (223)
Q Consensus        13 ~~i~~~~~~~i~~l~~lv~i~s~s~~----~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~   88 (223)
                      ++++.+.++++++|++|++|||+|..    ++.+.++.++++||.++|+++|++++.+..              .|++++
T Consensus         2 ~~~~~~~~~~~~~l~~lv~i~s~s~~g~~~~~~s~~e~~~~~~i~~~l~~~G~~v~~~~~--------------gnv~a~   67 (423)
T 1z2l_A            2 SLITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEV--------------GNLYGR   67 (423)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEECTT--------------SCEEEE
T ss_pred             CcccccHHHHHHHHHHHHhcCCCCCCCcccCcCCHHHHHHHHHHHHHHHHcCCEEEEecC--------------CcEEEE
Confidence            45666678899999999999999842    223568899999999999999998876543              389999


Q ss_pred             cCCC-CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         89 LGND-KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        89 ~~~~-~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      +.+. ++.|+|+|.|||||||.+                      |..|||+|++++|+|++.|++.+.+++++|.++
T Consensus        68 ~~g~~~~~~~i~l~~H~D~Vp~~----------------------g~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i  123 (423)
T 1z2l_A           68 LNGTEYPQEVVLSGSHIDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVV  123 (423)
T ss_dssp             ECCSSEEEEEEEEEEECCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEE
T ss_pred             EcCCCCCCCEEEEEEecCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence            8533 234899999999999985                      668999999999999999999988888888754

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A

Probab=99.79  E-value=9.9e-19  Score=157.05  Aligned_cols=113  Identities=18%  Similarity=0.242  Sum_probs=92.4

Q ss_pred             hcHHHHHHHHHHh-hccCCCCC-----------CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305         17 SNKNKFIENLKEA-VAIESVSS-----------SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus        17 ~~~~~~i~~l~~l-v~i~s~s~-----------~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      .+.+++++.|++| ++|||+|.           ....+.++.++++||.++|+++|++++.+..              .|
T Consensus        29 ~~~~~~~~~l~~L~v~i~s~s~~~~~~~~~g~~r~~~s~~e~~~~~~l~~~l~~~G~~v~~d~~--------------gn   94 (474)
T 2v8h_A           29 IASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKVDKI--------------GN   94 (474)
T ss_dssp             CCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHTTCEEEEBTT--------------CC
T ss_pred             CCHHHHHHHHHHHhhhcCCccccccccccCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEEecC--------------ce
Confidence            4567899999999 99999862           1223568899999999999999998876432              38


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE  164 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~  164 (223)
                      +++++++..+.++|+|+|||||||++                      |.+|||+|++++|+|+++|++.+.+++++|.+
T Consensus        95 via~~~g~~~~~~i~l~~H~DtVp~~----------------------g~~D~k~gvaa~L~a~~~L~~~~~~~~~~v~l  152 (474)
T 2v8h_A           95 MFAVYPGKNGGKPTATGSHLDTQPEA----------------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCV  152 (474)
T ss_dssp             EEEEECCSSCCSCEEEEECCCCCSSB----------------------CSSTTHHHHHHHHHHHHHHHHHTCCCSSCEEE
T ss_pred             EEEEECCCCCCCeEEEEEecccCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            99998543234689999999999986                      33699999999999999999998888888875


Q ss_pred             e
Q psy17305        165 V  165 (223)
Q Consensus       165 ~  165 (223)
                      +
T Consensus       153 i  153 (474)
T 2v8h_A          153 V  153 (474)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4

Probab=99.78  E-value=7e-19  Score=152.26  Aligned_cols=124  Identities=18%  Similarity=0.218  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++++++|++|++|||+|+.      +..+++|+.++|+++|++++++..              .|+++++++..+.|+|
T Consensus         5 ~~~~~~~l~~lv~i~s~s~~------e~~~~~~l~~~l~~~g~~~~~d~~--------------gnl~a~~~g~~~~~~i   64 (349)
T 2gre_A            5 TKETMELIKELVSIPSPSGN------TAKIINFIENYVSEWNVETKRNNK--------------GALILTVKGKNDAQHR   64 (349)
T ss_dssp             HHHHHHHHHHHHTSCCBTTC------CHHHHHHHHHHTTTSSSEEEECSS--------------SCEEEEECCSEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHHhCCEEEEecC--------------CcEEEEecCCCCCceE
Confidence            46789999999999999974      457899999999999999887633              3899998543235789


Q ss_pred             EEEeccccC----------------CCCCCCCCCCCCCcee---------------------------------------
Q psy17305         99 LVYGHLDVQ----------------PAEKEDGWNTEPFVLT---------------------------------------  123 (223)
Q Consensus        99 ll~~H~DtV----------------p~~~~~~w~~~P~~~~---------------------------------------  123 (223)
                      +|+||||||                |.|   +|..+||...                                       
T Consensus        65 ll~~H~Dtv~~~v~~i~~~G~l~~~~~G---g~~~~~~~~~~v~i~~~~g~~~~g~i~~~~~~~h~~~~~~~~~~~~~~l  141 (349)
T 2gre_A           65 LLTAHVDTLGAMVKEIKPDGRLSLSMIG---GFRWNSVEGEYCEIETSSGKTYTGTILMHQTSVHVYKDAGEAKRDEKNI  141 (349)
T ss_dssp             EEEEECCBCEEEEEEECTTSCEEEEEES---SCCGGGTTTCEEEEECTTSCEEEEEEECC-------------------C
T ss_pred             EEEecccccceeEEEECCCCeEEEEecC---CCccccccCcEEEEEcCCCCEEEEEEeCCCCCccccchhccCCCCHHHc
Confidence            999999999                443   4666554210                                       


Q ss_pred             ---------------------------------eeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        124 ---------------------------------LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       124 ---------------------------------~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                                                       ..++++||| +.|||+|++++|+|++.|++.+.+++.++.+++
T Consensus       142 ~~~id~g~~~~~~~~~~gi~~gd~v~~~~~~~~~~~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~  216 (349)
T 2gre_A          142 EVRIDERVFSADEVRELGIEVGDFVSFDPRVQITESGYIKSR-HLDDKVSVAILLKLIKRLQDENVTLPYTTHFLI  216 (349)
T ss_dssp             EEEESSCCCSHHHHHHTTCCTTCEEEECCCCEECTTSEEEES-CCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEE
T ss_pred             eEEeccCCCCHHHHHHcCCCCCCEEEEccccEEccCCeEEEe-eccchHHHHHHHHHHHHHHhccCCCCceEEEEE
Confidence                                             135899999 699999999999999999998877778887543

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}

Probab=99.77  E-value=6.7e-18  Score=148.67  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhhccCCCCC----CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-C
Q psy17305         19 KNKFIENLKEAVAIESVSS----SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-K   93 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~----~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~   93 (223)
                      .++++++|++|++|+|++.    .+..+.++.++++||.++|+++|++++.+..              .|+++++++. +
T Consensus         4 ~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~d~~--------------gnv~a~~~g~~~   69 (408)
T 3n5f_A            4 GERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAA--------------GNLIGRKEGTNP   69 (408)
T ss_dssp             HHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEECTT--------------CCEEEEECCSST
T ss_pred             HHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEcCC--------------CCEEEEecCCCC
Confidence            4788999999999999542    2223568999999999999999999887543              3999998543 3


Q ss_pred             CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305         94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      +.|+|+|.+||||||.+                      |..|||+|++++|.+++.|++.+..++++|.++
T Consensus        70 ~~~~i~l~aH~D~v~~~----------------------g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~  119 (408)
T 3n5f_A           70 DATVVLVGSHLDSVYNG----------------------GCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVV  119 (408)
T ss_dssp             TSCEEEEEEESCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEE
T ss_pred             CCCEEEEEecCCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence            47899999999999986                      789999999999999999999987788887654

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A

Probab=99.75  E-value=9.3e-18  Score=141.36  Aligned_cols=120  Identities=15%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhhccCCCCCC--CCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCcc
Q psy17305         19 KNKFIENLKEAVAIESVSSS--VQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKH   96 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~--~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~   96 (223)
                      .+++++.|++|++|+|+|+.  ...++++.++++||.++|+++|++++.+.....    +.   ...||++++++..+.+
T Consensus         6 ~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g~~v~~~~~~~~----~~---~~~nvi~~~~g~~~~~   78 (284)
T 1tkj_A            6 LANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSG----GA---TGYNLIANWPGGDPNK   78 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEET----TE---EEEEEEEECSCSEEEE
T ss_pred             HHHHHHHHHHHHcccccCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeccC----CC---CceeEEEEEeCCCCCC
Confidence            57889999999999998863  224557889999999999999999988765210    00   0159999985432357


Q ss_pred             EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|+|.+||||||.+                     ||+.|||+|++++|++++.|++.+.+++++|.+++
T Consensus        79 ~i~l~aH~D~v~~g---------------------~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~  127 (284)
T 1tkj_A           79 VLMAGAHLDSVSSG---------------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAW  127 (284)
T ss_dssp             EEEEEEECCCCTTS---------------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred             EEEEEeecCCCCCC---------------------CCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence            89999999999874                     59999999999999999999998878888888664

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...

Probab=99.72  E-value=3.2e-17  Score=138.97  Aligned_cols=125  Identities=10%  Similarity=0.162  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcC--Cc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CC
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG--AT-VEICDIGNQTLPNGESIKYPPVILGNLGND-KA   94 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G--~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~   94 (223)
                      .+++++.|++|+++++...   .++.+.++++||.++|+++|  ++ ++.+......  .+     ..||++++.+. .+
T Consensus        19 ~~~~~~~l~~L~~i~sr~~---~s~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~--~~-----~~nvi~~~~g~~~~   88 (299)
T 1rtq_A           19 ASQITGTISSLESFTNRFY---TTTSGAQASDWIASEWQALSASLPNASVKQVSHSG--YN-----QKSVVMTITGSEAP   88 (299)
T ss_dssp             HHHHHHHHHHHHTSSCCCT---TSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETT--EE-----EEEEEEEECCSSEE
T ss_pred             HHHHHHHHHHHhCcCCCCC---CCchHHHHHHHHHHHHHHhcCCcccceeeeeccCC--CC-----CceEEEEEECCCCC
Confidence            4789999999999985432   12367799999999999987  33 4444331000  00     15999998543 23


Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      .+.|+|.||+||||..    |.         ++++||||+.|||+|++++|++++.|++.+.+++++|.+++
T Consensus        89 ~~~v~l~aH~D~v~~~----~~---------~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~  147 (299)
T 1rtq_A           89 DEWIVIGGHLDSTIGS----HT---------NEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMA  147 (299)
T ss_dssp             EEEEEEEEECCCCSST----TC---------CTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred             CCEEEEEeccccCCCc----Cc---------CCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence            5789999999999842    63         25789999999999999999999999998888888888654

>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=99.72  E-value=2.4e-18  Score=148.36  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEecc
Q psy17305         25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHL  104 (223)
Q Consensus        25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~  104 (223)
                      +|++|+++||+|++      +.+++++|+++|+++|++++.+..              .|+++++.+..+.|+|+|.|||
T Consensus         3 ~l~~L~~~~s~sg~------e~~~~~~l~~~l~~~g~~~~~d~~--------------gnlia~~~g~~~~~~v~l~aH~   62 (340)
T 2fvg_A            3 YLKELSMMPGVSGD------EGKVRDFIKSKIEGLVDNLYTDVL--------------GNLIALKRGRDSSKKLLVSAHM   62 (340)
T ss_dssp             CHHHHHHSCCBTTC------CHHHHHHHHHHHGGGSSEEEECTT--------------SCEEEEECCSEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCCCCc------hHHHHHHHHHHHHhhCCEEEEeCC--------------CcEEEEecCCCCCceEEEEecc
Confidence            58899999999984      457999999999999998877543              3899987543235789999999


Q ss_pred             ccCCCC-------------CCCCCCCCCCcee-----------------------------------------------e
Q psy17305        105 DVQPAE-------------KEDGWNTEPFVLT-----------------------------------------------L  124 (223)
Q Consensus       105 DtVp~~-------------~~~~w~~~P~~~~-----------------------------------------------~  124 (223)
                      ||||..             ...+|..+||.+.                                               +
T Consensus        63 D~v~~~v~~i~~~G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~i~~~~~h~~~~~~~~~~~~~~l~id~g~~s~~e~~~~i  142 (340)
T 2fvg_A           63 DEVGFVVSKIEKDGKVSFLPVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYV  142 (340)
T ss_dssp             CBCEEEEEEECTTSCEEEEEESCCCGGGCTTCEEEETTEEEEEEECC-----------CCSTTEEEECSCSSHHHHHTTC
T ss_pred             CcCcEEEEEECCCCEEEEEeeCCcccccccCCEEEECcEEEEEcCCCccccchhhccCCCcccEEEEeCCCCHHHHHhhC
Confidence            999820             0125988888652                                               2


Q ss_pred             e-C-------------CeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        125 K-D-------------EKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       125 ~-~-------------~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      + +             +++||| +.|||+|++++|+|++.|+    .++.++.++
T Consensus       143 ~~gd~v~~~~~~~~~~~~i~gr-a~D~k~g~a~~l~a~~~l~----~~~~~i~~~  192 (340)
T 2fvg_A          143 SIGDYVSFVSDYIEKNGRAVGK-AFDDRAGCSVLIDVLESGV----SPAYDTYFV  192 (340)
T ss_dssp             CTTCEEEECCCCEEETTEEEES-CHHHHHHHHHHHHHHHTCC----CCSEEEEEE
T ss_pred             CCCCEEEEccCceeecCEEeec-cCccHHHHHHHHHHHHHhh----ccCCcEEEE
Confidence            2 5             999999 9999999999999999886    355676644

>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4

Probab=99.71  E-value=2.1e-17  Score=144.24  Aligned_cols=122  Identities=14%  Similarity=0.217  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++|+++||+|+.      +.+++++|+++|+++|++++.+..              .|+++++.+....|+|+
T Consensus         7 ~~~~~~l~~L~~~~s~sg~------e~~~~~~l~~~l~~~g~~~~~d~~--------------gnlia~~~g~~~~~~vl   66 (373)
T 1vhe_A            7 DETLTMLKDLTDAKGIPGN------EREVRQVMKSYIEPFADEVTTDRL--------------GSLIAKKTGAENGPKIM   66 (373)
T ss_dssp             CHHHHHHHHHHHSCCCTTC------CHHHHHHHHHHHGGGCSEEEECTT--------------CCEEEEEESSTTSCEEE
T ss_pred             HHHHHHHHHHHcCCCCCCc------hHHHHHHHHHHHHhhCCEEEEcCC--------------CcEEEEecCCCCCceEE
Confidence            4688999999999999984      568999999999999998876543              38999874332358999


Q ss_pred             EEeccccCCC----------------CC---------------CC-------CCCCCC----------------------
Q psy17305        100 VYGHLDVQPA----------------EK---------------ED-------GWNTEP----------------------  119 (223)
Q Consensus       100 l~~H~DtVp~----------------~~---------------~~-------~w~~~P----------------------  119 (223)
                      |.|||||||.                |.               .+       .|. +|                      
T Consensus        67 l~aH~D~v~~~v~~i~~~G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~-~~h~~~~~~~~~~~~~~~l~id~g  145 (373)
T 1vhe_A           67 IAGHLDEVGFMVTQITDKGFIRFQTVGGWWAQVMLAQRVTIVTKKGEITGVIGSK-PPHILSPEARKKSVEIKDMFIDIG  145 (373)
T ss_dssp             EEEECCCCEEEEEEECTTSCEEEEEESCCCGGGTTTCEEEEEETTEEEEEEEECC-CGGGSCTTTTTSCCCGGGCEEECS
T ss_pred             EEecCCcCCEEEEEECCCCeEEEEEeCCcchhhccCCEEEEEeCCCcEEEEEcCC-CcccCchhhccCCCChhHeEEEec
Confidence            9999999982                10               01       143 12                      


Q ss_pred             -----------------------CceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        120 -----------------------FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       120 -----------------------~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                                             |....+++++||| +.|||+|++++|+|++.|++.+  ++.++.++
T Consensus       146 ~~s~~~~~~~gi~~Gd~v~~~~~~~~~~~~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~  211 (373)
T 1vhe_A          146 ASSREEALEWGVLPGDMIVPHFEFTVMNNEKFLLAK-AWDNRIGCAIAIDVLRNLQNTD--HPNIVYGV  211 (373)
T ss_dssp             CSSHHHHHHTTCCTTCEEEECCCCEECSSTTEEEET-THHHHHHHHHHHHHHHHHHTSC--CSSEEEEE
T ss_pred             CCCHHHHHHcCCCCCCEEEEccccEEecCCCeEEec-cCccHHHHHHHHHHHHHHhhcC--CCceEEEE
Confidence                                   1111137899999 6999999999999999998865  45666544

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}

Probab=99.70  E-value=2.1e-16  Score=134.60  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .+++.+.|++|+++.+..   ..++++.++++||.++|+++|++++.+.+.... +.|+.. ...||++++++. ..+.|
T Consensus        24 ~~~~~~~l~~l~~~~~R~---~~s~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~-~~g~~~-~~~Nvia~~~g~-~~~~i   97 (309)
T 3tc8_A           24 ADSAYAYVANQVAFGPRV---PNTAAHKACGDYLASELKRFGAKVYQQEAILTA-YDGTKL-EARNIIGSFDPE-NSKRV   97 (309)
T ss_dssp             HHHHHHHHHHHHHTCCCC---TTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTSCEE-EEEEEEEEESTT-CSSEE
T ss_pred             HHHHHHHHHHHHccCCCC---CCCHHHHHHHHHHHHHHHHCCCeEEEEEeeccc-cCCCcc-cceEEEEEECCC-CCceE
Confidence            477888999998875432   234478999999999999999999887653110 011000 015999999654 35799


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.|||||||.+.     .+||.  .+++++| +|+.||++|++++|++++.|.+.+  ++.+|.+++
T Consensus        98 ll~aH~Dsv~~~~-----~~p~~--~~~~~~~-~Ga~D~~sGva~~Le~ar~l~~~~--~~~~i~f~~  155 (309)
T 3tc8_A           98 LLFAHWDSRPYSD-----HDPDP--SKHRTPL-DGADDGGSGVGALLEIARQIGQKA--PGIGIDIIF  155 (309)
T ss_dssp             EEEEECCCCSCCT-----TCSSG--GGTTSCC-CCTTTTHHHHHHHHHHHHHHHHSC--CSSEEEEEE
T ss_pred             EEEecccCCCCCC-----CCccc--cCCCccc-cCcccchHhHHHHHHHHHHHHhCC--CCCcEEEEE
Confidence            9999999999863     36774  5788888 999999999999999999999875  567777654

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=99.69  E-value=2.2e-16  Score=134.72  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .+++++.|++|+++++...   .++++.++++||.++|+++|++++.+.+.... +.|+.. ...||++++++. ..+.|
T Consensus        26 ~~~~~~~l~~L~~~~~R~~---gs~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~-~~g~~~-~~~Nvia~~~g~-~~~~i   99 (314)
T 3gux_A           26 ADSAYQYIQVQADFGPRVP---NTQAHKECGEYLAGQLEKFGAKVYNQYADLIA-YDGTIL-KSRNIIGAYKPE-SKKRI   99 (314)
T ss_dssp             HHHHHHHHHHHHTTCCCCT---TSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTSCEE-EEEEEEEEESTT-CSSEE
T ss_pred             HHHHHHHHHHHHccCCcCC---CCHHHHHHHHHHHHHHHHCCCEEEEEEeeccc-cCCCcc-cceEEEEEECCC-CCceE
Confidence            5789999999999875332   34478999999999999999999877653110 011000 015999999654 35799


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.|||||||.++     .+|+  ..+++. +.||+.||++|++++|++++.|.+.+  ++.+|.+++
T Consensus       100 ll~aH~Dsv~~~~-----~~p~--~~~~~~-~~~GA~D~~sGva~~Le~ar~l~~~~--~~~~i~fv~  157 (314)
T 3gux_A          100 LLCAHWDSRPYAD-----NDPD--PKNHHT-PILGVNDGASGVGVLLEIARQIQKEQ--PALGIDIVF  157 (314)
T ss_dssp             EEEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC--CSSEEEEEE
T ss_pred             EEEccccCCCcCC-----CCcc--cccCCc-ccCCCcccHHHHHHHHHHHHHHHhCC--CCCcEEEEE
Confidence            9999999999863     3465  344444 45999999999999999999999875  667777654

>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A

Probab=99.69  E-value=2.3e-17  Score=141.66  Aligned_cols=114  Identities=19%  Similarity=0.295  Sum_probs=89.6

Q ss_pred             HHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEE
Q psy17305         22 FIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVY  101 (223)
Q Consensus        22 ~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~  101 (223)
                      ++++|++|+++||+|++      +.+++++|+++|+++|+ ++.+..              .|+++++++  +.|+|+|.
T Consensus         4 ~~~~l~~l~~~~s~sg~------e~~~~~~l~~~l~~~g~-~~~d~~--------------gnlia~~~~--~~~~i~l~   60 (332)
T 2wyr_A            4 MIEKLKKFTQIPGISGY------EERIREEIIREIKDFAD-YKVDAI--------------GNLIVELGE--GEERILFM   60 (332)
T ss_dssp             HHHHHHHHHTSCCBTTC------CHHHHHHHHHHHTTTCC-CEECTT--------------CCEEEEEES--SSEEEEEE
T ss_pred             HHHHHHHHHcCCCCCCc------HHHHHHHHHHHHhhcCc-EEEcCC--------------CeEEEEecC--CCceEEEE
Confidence            67899999999999984      46899999999999999 665322              489998754  35899999


Q ss_pred             eccccCC----------------CCCCCCCCC------------------------------------------------
Q psy17305        102 GHLDVQP----------------AEKEDGWNT------------------------------------------------  117 (223)
Q Consensus       102 ~H~DtVp----------------~~~~~~w~~------------------------------------------------  117 (223)
                      ||||||+                .|   +|..                                                
T Consensus        61 aH~D~v~~~v~~i~~~G~l~~~~~G---g~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~~id~g~  137 (332)
T 2wyr_A           61 AHMDEIGLLITGITDEGKLRFRKVG---GIDDRLLYGRHVNVVTEKGILDGVIGATPPHLSLERDKSVIPWYDLVIDIGA  137 (332)
T ss_dssp             EECCBCEEEEEEECTTSCEEEEEES---CCCGGGTTTEEEEEECSSCEEEEEECCCCTTC-----CCCCCGGGCCBBCSC
T ss_pred             eccCcccEEEEEECCCCeEEEEecC---CcChhhccCCEEEEEcCCCCEEEEEcCCCcccChhhhccCCChHHEEEEeCC
Confidence            9999994                44   2321                                                


Q ss_pred             -------------------CCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        118 -------------------EPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       118 -------------------~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                                         +||.. ..++++||| +.|||+|++++|+|++.|++.+  ++.++.++
T Consensus       138 ~~~~~~~~~i~~Gd~~~~~~~~~~-~~~~~i~gr-a~D~k~g~a~~l~a~~~l~~~~--~~~~i~~~  200 (332)
T 2wyr_A          138 ESKEEALELVKPLDFAVFKKHFSV-LNGKYVSTR-GLDDRFGVVALIEAIKDLVDHE--LEGKVIFA  200 (332)
T ss_dssp             SSHHHHHHHCCTTCEEEECCCCEE-ETTTEEECT-THHHHHHHHHHHHHHHTTTTSC--CSSEEEEE
T ss_pred             CCHHHHHhhCCCCCEEEEccccEE-ecCCeEEcc-cCCcHHHHHHHHHHHHHHhhcC--CCceEEEE
Confidence                               13332 378999999 9999999999999999998765  45666654

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...

Probab=99.61  E-value=7.6e-15  Score=126.00  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=90.7

Q ss_pred             HHHH-HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHh--cCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCc
Q psy17305         19 KNKF-IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQ--LGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAK   95 (223)
Q Consensus        19 ~~~~-i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~--~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~   95 (223)
                      .+++ .+.|++|+....+.     +++..++++||.++|++  +|++++.+...... +.|.  ....||++++++. +.
T Consensus        30 ~~~~~~~~l~~L~~~r~~~-----s~~~~~~~~~l~~~l~~~~~G~~v~~~~~~~~~-~~g~--~~~~Nvi~~~~g~-~~  100 (329)
T 2afw_A           30 ISEMWQNDLQPLLIERYPG-----SPGSYAARQHIMQRIQRLQADWVLEIDTFLSQT-PYGY--RSFSNIISTLNPT-AK  100 (329)
T ss_dssp             HHHHHHHTTGGGCSCCCTT-----SHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECC-TTSS--EEEEEEEEESSTT-SS
T ss_pred             HHHHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHHHhhCCCCEEEEEEEEecC-CCCC--ceEeEEEEEECCC-CC
Confidence            4678 88889996433322     22566899999999999  99998887643210 0010  0016999999654 46


Q ss_pred             cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc--------cCCCceeeEEec
Q psy17305         96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT--------KKNVPVNIKEVT  166 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~--------~~~~~~~i~~~~  166 (223)
                      +.|+|.||+||||.+   .|.          +++ |+|+.||++|++++|++++.|.+.        +.+++.+|.+++
T Consensus       101 ~~i~l~aH~Dsv~~~---~~~----------~~~-~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~  165 (329)
T 2afw_A          101 RHLVLACHYDSKYFS---HWN----------NRV-FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIF  165 (329)
T ss_dssp             EEEEEEEECCCCCCC---CBT----------TBC-CCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEE
T ss_pred             cEEEEEEeccCCCcC---ccc----------CcC-CCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEE
Confidence            889999999999975   242          444 899999999999999999999886        346778888776

>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A

Probab=99.60  E-value=8.9e-16  Score=132.84  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             HHHHHHHhhccCCCCCCCCCchHH-HHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         22 FIENLKEAVAIESVSSSVQHRPQT-INMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        22 ~i~~l~~lv~i~s~s~~~~~~~~~-~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      ++++|++|+++||+|++      + .+++++|+++|+++|++++.+..              .|+++++++.  .|+|+|
T Consensus         8 ~~~~l~~L~~~~s~sg~------e~~~~~~~l~~~l~~~g~~~~~d~~--------------gnlia~~~g~--~~~i~l   65 (353)
T 1y0y_A            8 DYELLKKVVEAPGVSGY------EFLGIRDVVIEEIKDYVDEVKVDKL--------------GNVIAHKKGE--GPKVMI   65 (353)
T ss_dssp             CHHHHHHHHHSCCBTTC------GGGTHHHHHHHHHGGGSSEEEECTT--------------CCEEEEECCS--SCEEEE
T ss_pred             HHHHHHHHHhCCCCCcc------chHHHHHHHHHHHHhhCCeEEEcCC--------------CCEEEEecCC--CccEEE
Confidence            57899999999999984      4 67999999999999998877543              3899987543  589999


Q ss_pred             EeccccCC
Q psy17305        101 YGHLDVQP  108 (223)
Q Consensus       101 ~~H~DtVp  108 (223)
                      .||+|||+
T Consensus        66 ~aH~D~v~   73 (353)
T 1y0y_A           66 AAHMDQIG   73 (353)
T ss_dssp             EEECCBCE
T ss_pred             EeccCccc
Confidence            99999995

>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=99.51  E-value=4.9e-14  Score=121.43  Aligned_cols=67  Identities=12%  Similarity=0.162  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      +++++|++|+++||+|++      +.+++++|+++|+++|++++.+..              .|+++++.+. +.|.|+|
T Consensus         6 ~~~~~l~~Lv~~~s~sg~------e~~~~~~l~~~l~~~g~~~~~d~~--------------gnlia~~~g~-~~~~i~l   64 (346)
T 1vho_A            6 ETGKLLMELSNLDGPSGY------ETNVVSYIKSVIEPFVDEAKTTRH--------------GSLIGYKKGK-GIGKLAF   64 (346)
T ss_dssp             CHHHHHHHHHHSCCBTTC------CHHHHHHHHHHHGGGCSEEEECTT--------------SCEEEEECCS-SSCEEEE
T ss_pred             HHHHHHHHHHcCCCCCcc------hHHHHHHHHHHHHhhCCEEEEecC--------------CcEEEEEcCC-CCceEEE
Confidence            568899999999999984      567999999999999998877543              3899987543 2588999


Q ss_pred             EeccccCC
Q psy17305        101 YGHLDVQP  108 (223)
Q Consensus       101 ~~H~DtVp  108 (223)
                      .||+|||+
T Consensus        65 ~aH~DtV~   72 (346)
T 1vho_A           65 FAHVDEIG   72 (346)
T ss_dssp             EEECCBCC
T ss_pred             EecCcccc
Confidence            99999995

>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A

Probab=99.51  E-value=1.3e-14  Score=121.96  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=72.2

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      +++|++|++|||+|++     ++..+++||+++|+++|++++++..+              ||+++++++  +|+|+|.|
T Consensus        12 ~elL~~Lv~ipS~sg~-----E~~~v~~~l~~~l~~~G~~v~~D~~G--------------Nlia~~~g~--~p~lll~~   70 (354)
T 2wzn_A           12 WKLMQEIIEAPGVSGY-----EHLGIRDIVVDVLKEVADEVKVDKLG--------------NVIAHFKGS--SPRIMVAA   70 (354)
T ss_dssp             HHHHHHHHHSCCBTTC-----GGGTHHHHHHHHHHTTSSEEEECTTC--------------CEEEEECCS--SSEEEEEE
T ss_pred             HHHHHHHhcCCCCCcc-----hHHHHHHHHHHHHHHcCCEEEEeCCC--------------eEEEEECCC--CceEEEEe
Confidence            4789999999999985     23468899999999999999887654              999999754  68999999


Q ss_pred             ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHH
Q psy17305        103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVL  142 (223)
Q Consensus       103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~  142 (223)
                      ||||||...         ....++++++++|..++++.++
T Consensus        71 H~Dtvp~~v---------~~~~~~g~~~~~~~~~~~~~~~  101 (354)
T 2wzn_A           71 HMDKIGVMV---------NHIDKDGYLHIVPIGGVLPETL  101 (354)
T ss_dssp             ECCBCEEEE---------EEECTTSCEEEEEESSCCGGGG
T ss_pred             ccccCCCcC---------CeeecCCceeeccCCCccHHHH
Confidence            999998752         2245678889888777766544

>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4

Probab=99.49  E-value=6.1e-14  Score=120.76  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305         24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH  103 (223)
Q Consensus        24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H  103 (223)
                      ++|++|+++||+|++      +.++++||+++|+++|++++.+..              .|+++++.+. +.|+|+|.||
T Consensus         7 ~~l~~Lv~~~s~sg~------e~~~~~~l~~~l~~~g~~v~~d~~--------------gnlia~~~g~-~~~~vll~aH   65 (348)
T 1ylo_A            7 SLLKALSEADAIASS------EQEVRQILLEEAARLQKEVRFDGL--------------GSVLIRLNES-TGPKVMICAH   65 (348)
T ss_dssp             HHHHHHHHSCCBTTB------CHHHHHHHHHHHHHTTCCEEECTT--------------CCEEEECCCC-SSCEEEEEEE
T ss_pred             HHHHHHHcCCCCCCc------hHHHHHHHHHHHHhhCCEEEEecC--------------CCEEEEecCC-CCceEEEEEc
Confidence            689999999999984      557899999999999999876543              3899987543 3578999999


Q ss_pred             cccCC
Q psy17305        104 LDVQP  108 (223)
Q Consensus       104 ~DtVp  108 (223)
                      +|||+
T Consensus        66 ~DtV~   70 (348)
T 1ylo_A           66 MDEVG   70 (348)
T ss_dssp             CCCCE
T ss_pred             CCccc
Confidence            99995

>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}

Probab=99.42  E-value=1.6e-14  Score=123.59  Aligned_cols=117  Identities=12%  Similarity=0.041  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++++++|++|+++||+|++      +..++++|+++|+++|++++.+.....  .++     ..|+++.+++  + |+|
T Consensus        16 ~~~~~~~l~~Lv~i~s~sg~------e~~v~~~l~~~l~~~g~~v~~d~~~~~--~~~-----~gnlia~~~g--~-~~i   79 (321)
T 3cpx_A           16 YFQGMQLLKELCSIHAPSGN------EEPLKDFILEYIRSNAGSWSYQPVIYA--DND-----LQDCIVLVFG--N-PRT   79 (321)
T ss_dssp             GCCHHHHHHHHHHSCCBTTC------CHHHHHHHHHHHHHHGGGSSSCCEEEC--SGG-----GTTCEEEEES--S-CSE
T ss_pred             HHHHHHHHHHHHcCCCCCCC------HHHHHHHHHHHHHhhCCeEEEcccccc--ccC-----CccEEEEecC--C-ceE
Confidence            45689999999999999984      567899999999999998765541000  000     0388888754  3 789


Q ss_pred             EEEeccccCC-----------CCCCCCCCCCCCce--------------------------------------eeeCCeE
Q psy17305         99 LVYGHLDVQP-----------AEKEDGWNTEPFVL--------------------------------------TLKDEKL  129 (223)
Q Consensus        99 ll~~H~DtVp-----------~~~~~~w~~~P~~~--------------------------------------~~~~~~l  129 (223)
                      +|.||||||+           .|....|...++..                                      ...++++
T Consensus        80 ll~aH~DtV~~~v~~i~~~~~~Gg~~~~~~~~v~~~~~~g~~~gvi~~~ee~~~ida~~lv~~Gd~v~~~~~~~~~~g~i  159 (321)
T 3cpx_A           80 AVFAHMDSIGFTVSYNNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPDFREEGDFI  159 (321)
T ss_dssp             EEEEECCBCEEEECSTTBEEEESSCCCCTTCEEEEEETTEEEEEEEECGGGSCEEECSSCCCTTCEEEECCCCEEETTEE
T ss_pred             EEEecCCcCCeEecccCCeEEcCChhhcccCEEEEEeCCCceeeeECCccHHHHHHHHhcCCCCCEEEeccCcEEEcCEE
Confidence            9999999993           33111121111111                                      1113788


Q ss_pred             EecCCCCCchhHHHHHHHHHHHH
Q psy17305        130 YGRGASDDKGPVLGWLHAIEAFQ  152 (223)
Q Consensus       130 yGrG~~D~K~gv~~~l~al~~l~  152 (223)
                      ||| ..|||+|+++++++++.++
T Consensus       160 ~~~-~~D~k~G~aa~l~al~~l~  181 (321)
T 3cpx_A          160 LTP-YLDDRLGVWTALELAKTLE  181 (321)
T ss_dssp             ECT-THHHHHHHHHHHHHTTTCC
T ss_pred             EEc-CCcCHHHHHHHHHHHHHhc
Confidence            888 5899999999999998764

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*

Probab=99.41  E-value=5.7e-12  Score=108.03  Aligned_cols=124  Identities=18%  Similarity=0.231  Sum_probs=86.7

Q ss_pred             HHHHHH-HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCc
Q psy17305         19 KNKFIE-NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQL--GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAK   95 (223)
Q Consensus        19 ~~~~i~-~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~--G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~   95 (223)
                      .+++.+ .|+.+ -++...+    +++..++++||.++|+++  |++++.+.+.... +.|.  ....||++++++.. .
T Consensus        38 ~~~~~~~~L~~~-~~~R~~g----S~~~~~a~~~l~~~l~~~~~g~~v~~d~f~~~~-~~g~--~~~~Nvia~~~g~~-~  108 (330)
T 3pb6_X           38 PQRLWSTYLRPL-LVVRTPG----SPGNLQVRKFLEATLRSLTAGWHVELDPFTAST-PLGP--VDFGNVVATLDPRA-A  108 (330)
T ss_dssp             HHHHHHHTTGGG-CSCCCTT----SHHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEE-TTEE--EEEEEEEEESCTTS-S
T ss_pred             HHHHHHHHHHHH-hCCCCCC----CHHHHHHHHHHHHHHHHhCCCCeEEEEeeeccc-ccCC--ccceEEEEEECCCC-C
Confidence            355655 45555 3344333    447889999999999999  8988887653110 0000  00159999996543 5


Q ss_pred             cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-----cCCCceeeEEec
Q psy17305         96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-----KKNVPVNIKEVT  166 (223)
Q Consensus        96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-----~~~~~~~i~~~~  166 (223)
                      +.|++.+|||||+....    ..           ..+|+.|+++|++++|++++.|.+.     +.+++.+|.+++
T Consensus       109 ~~ivl~aH~Dsv~~~~g----~~-----------~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~  169 (330)
T 3pb6_X          109 RHLTLACHYDSKLFPPG----ST-----------PFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLF  169 (330)
T ss_dssp             EEEEEEEECCCCCCCTT----SC-----------CCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEE
T ss_pred             ceEEEEeccCCCCCCCC----Cc-----------CcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence            78999999999975210    01           2469999999999999999999874     356788898876

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*

Probab=99.32  E-value=5.3e-11  Score=101.18  Aligned_cols=119  Identities=14%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305         24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH  103 (223)
Q Consensus        24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H  103 (223)
                      +.|..++ +|.+.+    +++..++++||.+.|+++|++++.+...... +.+..++ ..|||+++++.. .+.|+|.+|
T Consensus        15 ~~l~~il-~PR~~g----s~~~~~~~~~i~~~l~~~g~~v~~~~f~~~~-~~~~~~~-~~Nii~~~~~~~-~~~vvl~aH   86 (312)
T 4f9u_A           15 RTLDSIL-VPRVVG----SRGHQQVREYLVQSLNGLGFQTEVDEFKQRV-PVFGELT-FANVVGTINPQA-QNFLALACH   86 (312)
T ss_dssp             HHHHHHC-SCCCTT----SHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE-TTTEEEE-EEEEEEEESTTS-SEEEEEEEE
T ss_pred             HHHHHhc-CCCCCC----CHHHHHHHHHHHHHHHHCCCeEEEEeEEEec-CCCCcee-EEEEEEEECCCC-CceEEEEEE
Confidence            3455543 576555    3478899999999999999999887653210 0000000 159999997643 578999999


Q ss_pred             cccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-----cCCCceeeEEec
Q psy17305        104 LDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-----KKNVPVNIKEVT  166 (223)
Q Consensus       104 ~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-----~~~~~~~i~~~~  166 (223)
                      ||+++.+.     ..+           .+|+.|+.+|++++|++++.|.+.     +.+++++|+|++
T Consensus        87 yDs~~~~~-----~~~-----------~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~  138 (312)
T 4f9u_A           87 YDSKYFPN-----DPG-----------FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIF  138 (312)
T ss_dssp             CCCCCCTT-----CTT-----------CCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEE
T ss_pred             EecCCCCC-----CCC-----------CCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEE
Confidence            99997642     112           249999999999999999999763     446788898876

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=1.8e-11  Score=104.04  Aligned_cols=132  Identities=20%  Similarity=0.242  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++..+.+++++++..   +...+++..++++||.+.|+++|++++.+...... ..|+.++ ..|||+++++.. .+.|
T Consensus        24 ~~~a~~~l~~l~~fgp---R~~gS~~~~~a~~~i~~~l~~~g~~v~~q~~~~~~-~~~~~~~-~~Nii~~~~g~~-~~~i   97 (309)
T 4fuu_A           24 ADSAYLYVKNQVDFGP---RVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIA-YDGTLLK-ARNIIGSYKPES-KKRI   97 (309)
T ss_dssp             HHHHHHHHHHHHTTCC---CCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTSCEEE-EEEEEEEESTTC-SSEE
T ss_pred             HHHHHHHHHHHhCcCC---cCCCCHHHHHHHHHHHHHHHHcCCeeEEEeEEecc-CCCCcce-eEEEEEEECCCC-CceE
Confidence            4778889999998632   22234578899999999999999999877653211 1121000 159999996643 5789


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.+||||+|.++.+..        ........+|+.|+.+|++++|++++.|.+..  ++.+|.+++
T Consensus        98 ~l~aH~Ds~~~~~~~~~--------~~~~~~~~~GA~D~aSG~a~lLE~ar~l~~~~--~~~~i~~~~  155 (309)
T 4fuu_A           98 ALFAHWDTRPWADNDAD--------EKNHHTPILGANDGASGVGALLEIARLVNQQQ--PELGIDIIF  155 (309)
T ss_dssp             EEEEECCCCSCCTTCSS--------GGGTTSCCCCTTTTHHHHHHHHHHHHHHHHSC--CSSEEEEEE
T ss_pred             EEEeecCCCCCCCCccc--------cccccCCcCCcccCchhHHHHHHHHHHHhhcC--CCCceEEEe
Confidence            99999999987632111        11112233599999999999999999998854  566676543

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*

Probab=99.30  E-value=7.9e-11  Score=101.00  Aligned_cols=131  Identities=18%  Similarity=0.228  Sum_probs=90.2

Q ss_pred             HHHHHHhc-HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305         11 ISEYVESN-KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL   89 (223)
Q Consensus        11 ~~~~i~~~-~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~   89 (223)
                      +.++.+.. ...+-+.|..+. +|.+.+.    ++..++++||.+.|+++|++++.+.+.......|. ++ ..|||+++
T Consensus        28 ~~~~~~~~~~~~~~~~l~~il-~pR~~Gs----~~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~-~~-~~Nii~~~  100 (330)
T 4fai_A           28 FLEYSNLSDKLHLREAIDKIL-IPRVVGT----TNHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGK-LH-FHNIIATL  100 (330)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHC-SCCCTTS----HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEE-EE-EEEEEEES
T ss_pred             HHhcccccHHHHHHHHHHhhc-CCCCCCC----HHHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCc-ee-EEEEEEEE
Confidence            44444432 234445555553 5766553    37889999999999999999988765421100010 00 15999999


Q ss_pred             CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc---cCCCceeeEEec
Q psy17305         90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT---KKNVPVNIKEVT  166 (223)
Q Consensus        90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~---~~~~~~~i~~~~  166 (223)
                      +++. ...|+|.+|||+++..+.      +           .+|+.|+.+|++++|++++.|.+.   +.++..+|.|++
T Consensus       101 ~~~~-~~~i~l~aHyDs~~~~~~------~-----------~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~  162 (330)
T 4fai_A          101 NPNA-ERYLVLSCHYDSKYMPGV------E-----------FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLF  162 (330)
T ss_dssp             CTTC-SEEEEEEEECCCCCCTTS------C-----------CCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEE
T ss_pred             CCCC-CcEEEEEEeecccccccC------C-----------CCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEE
Confidence            7653 568999999999975421      1           249999999999999999999763   456778888775

>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}

Probab=99.02  E-value=3.4e-10  Score=97.97  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCC-CccEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDK-AKHTVL   99 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~-~~~~il   99 (223)
                      +++++|++|+++||+|+.      +.++++|++++|+++|++++.+..+              |+++++++.. +.|+|+
T Consensus         4 ~~~~~l~~L~~ips~SG~------E~~v~~~l~~~l~~~g~~~~~D~~G--------------Nli~~~~g~~~~~~~v~   63 (355)
T 3kl9_A            4 TLFSKIKEVTELAAVSGH------EAPVRAYLREKLTPHVDEVVTDGLG--------------GIFGIKHSEAVDAPRVL   63 (355)
T ss_dssp             HHHHHHHHHHTSCCBTTC------CHHHHHHHHHHHGGGSSEEEECTTS--------------CEEEEECCCSTTCCEEE
T ss_pred             HHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHhCCEEEECCCC--------------eEEEEECCcCCCCCeEE
Confidence            468899999999999994      6789999999999999988877654              9999985543 478999


Q ss_pred             EEeccccCC
Q psy17305        100 VYGHLDVQP  108 (223)
Q Consensus       100 l~~H~DtVp  108 (223)
                      |.||||||+
T Consensus        64 l~aHmD~Vg   72 (355)
T 3kl9_A           64 VASHMDEVG   72 (355)
T ss_dssp             EEEECCBCE
T ss_pred             EEecccccc
Confidence            999999995

>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}

Probab=98.72  E-value=1e-08  Score=88.14  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      .+.++|++|+++|++|+      .|++++++++++++++|.+++.+..+              |+++++++  +.|+|+|
T Consensus        12 ~~~~~l~~L~~~pspSG------~E~~v~~~i~~~l~~~~~e~~~D~~G--------------nvi~~~g~--~~~~v~l   69 (343)
T 3isx_A           12 HMKELIRKLTEAFGPSG------REEEVRSIILEELEGHIDGHRIDGLG--------------NLIVWKGS--GEKKVIL   69 (343)
T ss_dssp             CCHHHHHHHHHSCCBTT------CCHHHHHHHHHHHTTTCSEEEECTTC--------------CEEEEECC--CSSEEEE
T ss_pred             HHHHHHHHHHhCCCCCC------chHHHHHHHHHHHHHhCCEEEECCCC--------------CEEEEECC--CCCEEEE
Confidence            35689999999999999      46799999999999999988887765              89998853  4689999


Q ss_pred             EeccccC
Q psy17305        101 YGHLDVQ  107 (223)
Q Consensus       101 ~~H~DtV  107 (223)
                      .||||||
T Consensus        70 ~aHmDev   76 (343)
T 3isx_A           70 DAHIDEI   76 (343)
T ss_dssp             EEECCBC
T ss_pred             Eeccccc
Confidence            9999998

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=98.71  E-value=3e-08  Score=87.48  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=49.6

Q ss_pred             cEEEEEcCCC-C---CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCC
Q psy17305         83 PVILGNLGND-K---AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNV  158 (223)
Q Consensus        83 ~nl~a~~~~~-~---~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~  158 (223)
                      .||++++++. +   +.+.|++.+|+|||+.+                     ||+.|+++|++++|++++.|.+.  ++
T Consensus       204 ~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~g---------------------~Ga~D~~~G~a~~le~~~~l~~~--~~  260 (421)
T 2ek8_A          204 HNVIATKKPDANKKNTNDIIIIGSHHDSVEKA---------------------PGANDDASGVAVTLELARVMSKL--KT  260 (421)
T ss_dssp             EEEEEEECCCSSTTCCCCEEEEEEECCCCTTC---------------------CCTTTTHHHHHHHHHHHHHHTTS--CC
T ss_pred             cceEEEecCcccCCCCCCEEEEecccccCCCC---------------------CCCCCCcHhHHHHHHHHHHHhcc--CC
Confidence            5999998542 2   46789999999999874                     59999999999999999999874  35


Q ss_pred             ceeeEEec
Q psy17305        159 PVNIKEVT  166 (223)
Q Consensus       159 ~~~i~~~~  166 (223)
                      +++|.+++
T Consensus       261 ~~~i~~~~  268 (421)
T 2ek8_A          261 DTELRFIT  268 (421)
T ss_dssp             SSEEEEEE
T ss_pred             CceEEEEE
Confidence            66777653

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=98.66  E-value=3.7e-08  Score=87.58  Aligned_cols=63  Identities=24%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             cEEEEEcCCC-CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCcee
Q psy17305         83 PVILGNLGND-KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN  161 (223)
Q Consensus        83 ~nl~a~~~~~-~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~  161 (223)
                      .||++++.+. ++.+.|+|.+|+|+|+.+                     +|+.|+++|++++|++++.|.+.+.+++++
T Consensus       236 ~Nvi~~~~g~~~~~~~i~~~aH~Ds~~~g---------------------~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~  294 (444)
T 3iib_A          236 YNVIAEVKGSTKADEIVLIGAHLDSWDEG---------------------TGAIDDGAGVAIVTAAAKHILDLPQKPERT  294 (444)
T ss_dssp             EEEEEEECCSTEEEEEEEEEEECCCCSSS---------------------CCTTTTHHHHHHHHHHHHHHHTSSSCCSEE
T ss_pred             EEEEEEEeCCCCCCCEEEEEeecccCCCC---------------------CCCccchHHHHHHHHHHHHHHhcCCCCCCe
Confidence            5999999543 245789999999999864                     499999999999999999999988788889


Q ss_pred             eEEec
Q psy17305        162 IKEVT  166 (223)
Q Consensus       162 i~~~~  166 (223)
                      |.+++
T Consensus       295 i~f~~  299 (444)
T 3iib_A          295 IRVVL  299 (444)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=98.17  E-value=2.7e-06  Score=79.48  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             cEEEEEcCCC-CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHH---ccCCC
Q psy17305         83 PVILGNLGND-KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ---TKKNV  158 (223)
Q Consensus        83 ~nl~a~~~~~-~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~---~~~~~  158 (223)
                      .||++++.+. .+.+.|++.+|+|+|+.                       |+.|+.+|++++|++++.|.+   .+.++
T Consensus       313 ~NVi~~i~G~~~~~~~vllgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~g~~p  369 (707)
T 3fed_A          313 YNVVGTIRGSVEPDRYVILGGHRDSWVF-----------------------GAIDPTSGVAVLQEIARSFGKLMSKGWRP  369 (707)
T ss_dssp             EEEEEEECCSSEEEEEEEEEEECCCSSS-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEEEEeCCCCCCceEEEeccccCCCC-----------------------CCccCcHHHHHHHHHHHHHHhhhhccCCC
Confidence            5999999653 24678999999999875                       679999999999999999876   46778


Q ss_pred             ceeeEEec
Q psy17305        159 PVNIKEVT  166 (223)
Q Consensus       159 ~~~i~~~~  166 (223)
                      .++|.|++
T Consensus       370 ~r~I~f~~  377 (707)
T 3fed_A          370 RRTIIFAS  377 (707)
T ss_dssp             SEEEEEEE
T ss_pred             CCCEEEEE
Confidence            88998764

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=98.08  E-value=5.2e-06  Score=76.77  Aligned_cols=61  Identities=18%  Similarity=0.099  Sum_probs=50.7

Q ss_pred             cEEEEEcCCC-CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc----cCC
Q psy17305         83 PVILGNLGND-KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT----KKN  157 (223)
Q Consensus        83 ~nl~a~~~~~-~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~----~~~  157 (223)
                      .||++++.+. .+.+.|++.+|+|++.+                       |+.|+.+|++++|++++.|.+.    +.+
T Consensus       267 ~NVi~~i~G~~~~~~~vvvgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~  323 (640)
T 3kas_A          267 LNIFGVIKGFVEPDHYVVVGAQRDAWGP-----------------------GAAKSGVGTALLLKLAQMFSDMVLKDGFQ  323 (640)
T ss_dssp             EEEEEEECCSSEEEEEEEEEEECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             EEEEEEEeCCcCCCCceeeecccCCCCC-----------------------CCCcCcHHHHHHHHHHHHHHHhhhhcCCC
Confidence            5999999543 34578999999999843                       8899999999999999999875    677


Q ss_pred             CceeeEEec
Q psy17305        158 VPVNIKEVT  166 (223)
Q Consensus       158 ~~~~i~~~~  166 (223)
                      +.++|.+++
T Consensus       324 p~r~I~f~~  332 (640)
T 3kas_A          324 PSRSIIFAS  332 (640)
T ss_dssp             CSEEEEEEE
T ss_pred             CCCcEEEEE
Confidence            888988764

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}

Probab=94.93  E-value=0.054  Score=47.29  Aligned_cols=56  Identities=11%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             EEEEEc--CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCcee
Q psy17305         84 VILGNL--GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN  161 (223)
Q Consensus        84 nl~a~~--~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~  161 (223)
                      +.++.+  +++ ..+.|+|.+|+|+ | +                      ++.|+.+|++++++.++.|++.  ++..+
T Consensus       167 l~y~e~~ipG~-t~~~IllsaH~cH-P-~----------------------~ANDNaSG~a~lleLar~l~~~--~~~~t  219 (435)
T 3k9t_A          167 LTYGEYYIRGE-LEEEILLTTYTCH-P-S----------------------MCNDNLSGVALITFIAKALSKL--KTKYS  219 (435)
T ss_dssp             EEEEEEEECCS-SSCEEEEEEECCC-C-S----------------------CTTTTHHHHHHHHHHHHHHTTS--CCSSE
T ss_pred             eEEEEEEecCC-CCCEEEEEEEcCC-C-C----------------------CCCccchHHHHHHHHHHHHhcC--CCCce
Confidence            444554  443 4589999999997 2 2                      6899999999999999999864  35667


Q ss_pred             eEEec
Q psy17305        162 IKEVT  166 (223)
Q Consensus       162 i~~~~  166 (223)
                      ++|++
T Consensus       220 ~rFvf  224 (435)
T 3k9t_A          220 YRFLF  224 (435)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4

Probab=91.62  E-value=0.22  Score=44.04  Aligned_cols=17  Identities=35%  Similarity=0.434  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHhcCCc
Q psy17305         46 INMIHYFADKLKQLGAT   62 (223)
Q Consensus        46 ~~~~~~l~~~l~~~G~~   62 (223)
                      ..+.+++.++|++.||.
T Consensus        36 ~hav~~~~~~l~~~Gf~   52 (458)
T 1y7e_A           36 REVTAYALDKAKKLGFI   52 (458)
T ss_dssp             HHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHHHHcCCc
Confidence            47899999999999985

>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}

Probab=84.12  E-value=1.7  Score=38.25  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC---CCCcEEEEEc-CCCCCccEEEEEeccccC
Q psy17305         45 TINMIHYFADKLKQLGATVEICDIGNQTLPNGESI---KYPPVILGNL-GNDKAKHTVLVYGHLDVQ  107 (223)
Q Consensus        45 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~---~~~~nl~a~~-~~~~~~~~ill~~H~DtV  107 (223)
                      ...+.+.+.+.|++.||.- ..+...  +.+|..+   ....||++.. +.....+.+++.+|+|.+
T Consensus        33 ~~h~v~~~~~~l~~~Gf~~-l~e~~~--l~~g~k~~~~r~~~~lia~~~g~~~~~g~~ii~AH~Dsp   96 (450)
T 2glf_A           33 ERMTVKEIKRILDESGFVP-LEDFAG--DPMNMTVYAVNRGKAIAAFRVVDDLKRGLNLVVAHIDSP   96 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCEE-TTSCCS--CTTSBCEEEESSSSCEEEEEBCSCGGGCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHCcCEE-cccccC--CCCCCEEEEEcCCCEEEEEEeCCCCCCCeEEEEEecccC
Confidence            3578899999999999942 111110  1112111   0014888886 432234789999999986

>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}

Probab=82.85  E-value=0.35  Score=42.39  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHhcCCc----EEEEecCC-CCCC-CCCCCCCCcEEEEEc-CCC--CCccEEEEEeccccC
Q psy17305         44 QTINMIHYFADKLKQLGAT----VEICDIGN-QTLP-NGESIKYPPVILGNL-GND--KAKHTVLVYGHLDVQ  107 (223)
Q Consensus        44 ~~~~~~~~l~~~l~~~G~~----~~~~~~~~-~~~~-~g~~~~~~~nl~a~~-~~~--~~~~~ill~~H~DtV  107 (223)
                      ....+.+++.++|++.||.    .+...... .++. +.    ...||++.. +.+  ...+.+++.+|+|++
T Consensus        17 t~~h~v~~~~~~l~~~Gf~~l~e~~~w~l~~g~k~~~~~----~~g~lia~~~G~~~~~~~~~~ii~AH~Dsp   85 (428)
T 2ijz_A           17 TPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTR----NDSSLIAIRLGRRSPLESGFRLVGAHTDSP   85 (428)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHSCC--------CCCCEECT----TTTCCEEEECC--CCSTTCCEEEECBCCCS
T ss_pred             CHHHHHHHHHHHHHHcCCeEcccccccccCCCCEEEEEC----CCCEEEEEEECCcCCCCCCcEEEEEcCCcC
Confidence            4678899999999999982    11111111 0110 00    014888876 432  134789999999997

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=80.87  E-value=6.6  Score=36.58  Aligned_cols=54  Identities=7%  Similarity=0.166  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEec
Q psy17305          9 AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDI   68 (223)
Q Consensus         9 ~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~   68 (223)
                      +.+.+.++.  +++.+.|+.|.++|..++    +++..++++|+.+.|++.|++ ++..+.
T Consensus        16 ~~~~~~~~~--~~i~~~l~~lt~~ph~aG----t~~~~~~a~yi~~~~~~~Gl~~v~~~~y   70 (707)
T 3fed_A           16 WKLVSEMKA--ENIKSFLRSFTKLPHLAG----TEQNFLLAKKIQTQWKKFGLDSAKLVHY   70 (707)
T ss_dssp             HHHHHHCCH--HHHHHHHHHHSSSCCCTT----SHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHhCCH--HHHHHHHHHHhcCCCcCC----CHhHHHHHHHHHHHHHHcCCCceeEEee
Confidence            344444433  678899999999876655    346889999999999999998 766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1lfwa1	272	c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {	5e-14
d1vgya1	262	c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimel	2e-13
d1cg2a1	276	c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2,	1e-12
g1q7l.1	280	c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain	1e-12
d1fnoa4	295	c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti	2e-08
d1rtqa_	291	c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti	4e-05
d2grea2	233	c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid	1e-04
d1vhea2	275	c.56.5.4 (A:3-72,A:163-367) Hypothetical protein Y	5e-04

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

 Score = 66.9 bits (162), Expect = 5e-14
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 10  EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQ------TINMIHYFADKLKQLGATV 63
              E  E+ K+  +++L+E +AI+S         +       ++ +  F    K+ G   
Sbjct: 4   NFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDT 63

Query: 64  EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
           E                      G +        + + GH+DV P    +GW  +PF + 
Sbjct: 64  ENFA----------------NYAGRVNFGAGDKRLGIIGHMDVVP--AGEGWTRDPFKME 105

Query: 124 LKDEK-LYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
           + +E  +YGRG++DDKGP L   + +   ++        I 
Sbjct: 106 IDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKID 146

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Length = 262

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Succinyl-diaminopimelate desuccinylase, catalytic domain
species: Neisseria meningitidis [TaxId: 487]

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 19/143 (13%)

Query: 19  KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGES 78
           + + +E  KE ++  SV+      P   +     A++L ++G   E    GN        
Sbjct: 2   ETQSLELAKELISRPSVT------PDDRDCQKLMAERLHKIGFAAEEMHFGN-------- 47

Query: 79  IKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDK 138
                + L           V   GH DV P    + W++ PF    +D +LYGRGA+D K
Sbjct: 48  --TKNIWLRRGTKAP---VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMK 102

Query: 139 GPVLGWLHAIEAFQQTKKNVPVN 161
             +  ++ A E F     N   +
Sbjct: 103 TSIACFVTACERFVAKHPNHQGS 125

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Carboxypeptidase G2, catalytic domain
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

 Score = 63.4 bits (153), Expect = 1e-12
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 11  ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN 70
           + +     +   I+ L++ V IE+ +   +         ++   +LK LG TV       
Sbjct: 7   LFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAA---AGNFLEAELKNLGFTVTRSKS-- 61

Query: 71  QTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLY 130
                   +     I+G +     K  +L+  H+D      +      PF   ++ +K Y
Sbjct: 62  ------AGLVVGDNIVGKIKGRGGK-NLLLMSHMDTVY--LKGILAKAPF--RVEGDKAY 110

Query: 131 GRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
           G G +DDKG     LH ++  ++        I
Sbjct: 111 GPGIADDKGGNAVILHTLKLLKEYGVRDYGTI 142

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase T (tripeptidase), catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 20/169 (11%), Positives = 41/169 (24%), Gaps = 44/169 (26%)

Query: 20  NKFIENLKEAVAIESVS----SSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPN 75
           +K +E     V++++ S      V        ++     +L+++G               
Sbjct: 2   DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLS------EK 55

Query: 76  GESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA-------------------------E 110
           G  +   P        +     +    H+D  P                          E
Sbjct: 56  GTLMATLPAN-----VEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDE 110

Query: 111 KEDGWNTEPFVLTLKDEKLYGRG----ASDDKGPVLGWLHAIEAFQQTK 155
                        L    +   G     +DDK  V   + A+   +   
Sbjct: 111 VLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNP 159

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Aeromonas proteolytica [TaxId: 671]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 16/112 (14%)

Query: 51  YFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAE 110
           + A + + L A++    +   +           V++   G++     +++ GHLD     
Sbjct: 48  WIASEWQALSASLPNASVKQVS---HSGYNQKSVVMTITGSEAPDEWIVIGGHLDSTIGS 104

Query: 111 KEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
             +  +                GA DD   +      I    +       +I
Sbjct: 105 HTNEQSV-------------APGADDDASGIAAVTEVIRVLSENNFQPKRSI 143

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Deblocking aminopeptidase YhfE
species: Bacillus cereus [TaxId: 1396]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 60/237 (25%)

Query: 18  NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQT-LPNG 76
           +  + +E +KE V+I S S        T  +I++  + + +     +  + G       G
Sbjct: 2   HTKETMELIKELVSIPSPSG------NTAKIINFIENYVSEWNVETKRNNKGALILTVKG 55

Query: 77  ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA-- 134
           ++     ++  ++         ++   +     E      T  F+++  +E++   G   
Sbjct: 56  KNDAQHRLLTAHVDTLDKVSVAILLKLIKRLQDENVTLPYTTHFLISN-NEEIGYGGNSN 114

Query: 135 ---------------------SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVL-- 171
                                SD+    +    +   +      +  ++ E+   N +  
Sbjct: 115 IPEETVEYLAVDMGALGDGQASDEYTVSICAKDSSGPYH---YALRKHLVELAKTNHIEY 171

Query: 172 ---LLPMGASDDGA--------------------HSQNEKIDVRNYIEGTKLLAAYL 205
              + P   SD  A                    H+  E+    +      L+ AY+
Sbjct: 172 KVDIYPYYGSDASAAIRAGFDVKHALIGAGIDSSHAF-ERTHESSIAHTEALVYAYV 227

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Length = 275

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Hypothetical protein YsdC, catalytic domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 29/151 (19%)

Query: 20  NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI 79
           ++ +  LK+    + +            +       ++     V    +G+         
Sbjct: 3   DETLTMLKDLTDAKGIPG------NEREVRQVMKSYIEPFADEVTTDRLGS--------- 47

Query: 80  KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
                ++      +    +++ GHLD  P  +    N E F             A D++ 
Sbjct: 48  -----LIAKKTGAENGPKIMIAGHLDEVPHFEFTVMNNEKF---------LLAKAWDNRI 93

Query: 140 PVLGWLHAIEAFQQTKKNVPVNIKEVTGKNV 170
                +  +   Q T     V       + V
Sbjct: 94  GCAIAIDVLRNLQNTDHPNIVYGVGTVQEEV 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1vgya1	262	Succinyl-diaminopimelate desuccinylase, catalytic	99.96
g1q7l.1	280	Aminoacylase-1, catalytic domain {Human (Homo sapi	99.96
d1cg2a1	276	Carboxypeptidase G2, catalytic domain {Pseudomonas	99.96
d1lfwa1	272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	99.95
d1z2la1	293	Allantoate amidohydrolase AllC catalytic domain {E	99.8
d1r3na1	322	Peptidase-like beta-alanine synthase, catalytic do	99.76
d1vhea2	275	Hypothetical protein YsdC, catalytic domain {Bacil	99.76
d1fnoa4	295	Peptidase T (tripeptidase), catalytic domain {Salm	99.69
d1yloa2	264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	99.67
d2fvga2	255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	99.67
d1vhoa2	248	Putative endoglucanase TM1048, catalytic domain {T	99.64
d2grea2	233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	99.62
d1tkja1	277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	99.62
d1rtqa_	291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	99.44
d3bi1a3	304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	99.25
d2afwa1	329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	99.24
d1ysja1	261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	99.22
d1xmba1	273	IAA-amino acid hydrolase, catalytic domain {Mouse-	99.18
d1de4c3	294	Transferrin receptor ectodomain, protease-like dom	99.15
d1y0ya2	255	Frv operon protein FrvX, catalytic domain {Pyrococ	98.25
d1cg2a2	113	Carboxypeptidase G2 {Pseudomonas sp., strain rs-16	94.07
d1r3na2	116	Peptidase-like beta-alanine synthase {Yeast (Sacch	83.15
d1xmba2	119	IAA-amino acid hydrolase {Mouse-ear cress (Arabido	80.89

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Succinyl-diaminopimelate desuccinylase, catalytic domain
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=8.3e-30  Score=210.83  Aligned_cols=128  Identities=28%  Similarity=0.420  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++++++|++||+|||+|++      ++++++||.++|+++||++++++.+..           .|++++.++  .+|+|+
T Consensus         3 ~e~lell~~Lv~i~S~s~~------e~~~a~~l~~~l~~~G~~~~~~~~~~~-----------~nv~~~~~~--~~~~l~   63 (262)
T d1vgya1           3 TQSLELAKELISRPSVTPD------DRDCQKLMAERLHKIGFAAEEMHFGNT-----------KNIWLRRGT--KAPVVC   63 (262)
T ss_dssp             SHHHHHHHHHHTSCCBTTC------CTTHHHHHHHHHHTTTCEEEECCBTTB-----------CEEEEEECS--SSSEEE
T ss_pred             HHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHCCCeEEEEEeCCc-----------cEEEEEecC--CCCeEE
Confidence            4689999999999999984      457899999999999999998877632           599998754  368999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |+|||||||+++.+.|..+||.+.++||++||||++|||++++++|+|++++++.+..++.++.+++
T Consensus        64 l~~H~DtVp~g~~~~w~~~p~~~~~~dg~iyGrGa~D~Kg~~a~~l~a~~~l~~~~~~~~~~~~l~~  130 (262)
T d1vgya1          64 FAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLI  130 (262)
T ss_dssp             EEEECCBCCCCCGGGSSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEE
T ss_pred             EEeccccccCCccccccccccccEEEcCceEeeccccccccHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence            9999999999988899999999999999999999999999999999999999999888887776544

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Carboxypeptidase G2, catalytic domain
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

Probab=99.96  E-value=9.4e-29  Score=206.06  Aligned_cols=142  Identities=20%  Similarity=0.283  Sum_probs=122.2

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEE
Q psy17305          9 AEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGN   88 (223)
Q Consensus         9 ~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~   88 (223)
                      +.+.+.+..+.+++++.|++||+|||+|++++   ++.++++||.++|+++|++++.++.....   .     .+|++++
T Consensus         5 ~~~~~~~~~~~~~~i~~L~~lv~i~S~s~~~~---~~~~~a~~l~~~l~~lG~~~~~~~~~~~~---~-----~~nv~a~   73 (276)
T d1cg2a1           5 NVLFQAATDEQPAVIKTLEKLVNIETGTGDAE---GIAAAGNFLEAELKNLGFTVTRSKSAGLV---V-----GDNIVGK   73 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCBTTCHH---HHHHHHHHHHHHHHHTTCEEEEEECSTTC---C-----SEEEEEE
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHHHCCCeEEEEecCCCC---c-----CCEEEEE
Confidence            35677777888999999999999999998755   67789999999999999999988765321   1     2699999


Q ss_pred             cCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         89 LGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        89 ~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +++. ..++|+|+||+||||+.  +.|..+||  .++++++||||++|||+|++++|++++.|++.+..++.+|.+++
T Consensus        74 ~~g~-~~~~vll~~H~DtV~~~--~~w~~~Pf--~~~~~~l~G~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~  146 (276)
T d1cg2a1          74 IKGR-GGKNLLLMSHMDTVYLK--GILAKAPF--RVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLF  146 (276)
T ss_dssp             EECS-SCCCEEEEEECCBSCCT--THHHHSCC--EEETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEE
T ss_pred             ECCC-CCCeEEEEecccccccc--cccCCCcc--eeecCeeeecccccccccHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence            8544 36899999999999985  46999999  68999999999999999999999999999999988888888664

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

Probab=99.95  E-value=4.1e-27  Score=195.64  Aligned_cols=138  Identities=25%  Similarity=0.454  Sum_probs=115.2

Q ss_pred             HHHHHHhcHHHHHHHHHHhhccCCCCCCCCC------chHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305         11 ISEYVESNKNKFIENLKEAVAIESVSSSVQH------RPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV   84 (223)
Q Consensus        11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~------~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n   84 (223)
                      +.++++++++++++.|++||+|||+|.+...      ..+..++++++.++++++|++++...                |
T Consensus         5 ~~~~~~~~~d~~l~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------------~   68 (272)
T d1lfwa1           5 FKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFA----------------N   68 (272)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET----------------T
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcCCCcccccccccchHHHHHHHHHHHHHHHcCCeeeeeC----------------c
Confidence            4668889999999999999999999976431      23467788999999999999987653                3


Q ss_pred             EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305         85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK  163 (223)
Q Consensus        85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~  163 (223)
                      ++++...+++.|+|+|+||+||||++  +.|+.+||.+.+ ++|++||||++|||++++++++|+++|++.+..++++|.
T Consensus        69 ~~~~~~~g~~~~~i~l~~H~DvVp~~--~~W~~dPf~~~i~~dg~l~GrG~~D~k~~~~~~~~a~~~l~~~~~~~~~~i~  146 (272)
T d1lfwa1          69 YAGRVNFGAGDKRLGIIGHMDVVPAG--EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKID  146 (272)
T ss_dssp             TEEEEEECCCSSEEEEEEECCBCCCC--SCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred             eEEEEEcCCCCCEEEEEeccceeecc--CCceeccccccccccceeeecccccccccHHHHHHHHHHHHHhCCCCCCCEE
Confidence            33333222346899999999999997  479999999975 688999999999999999999999999999999999998


Q ss_pred             Eec
Q psy17305        164 EVT  166 (223)
Q Consensus       164 ~~~  166 (223)
                      +++
T Consensus       147 ~~~  149 (272)
T d1lfwa1         147 FVL  149 (272)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Allantoate amidohydrolase AllC catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.6e-19  Score=148.45  Aligned_cols=134  Identities=15%  Similarity=0.137  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhhccCCCC-CCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-CCCCccE
Q psy17305         20 NKFIENLKEAVAIESVS-SSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-NDKAKHT   97 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s-~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~~~~~~~   97 (223)
                      ++.++.|.++-+.|... ....+++++.++++||.+||+++|++++.+..+              ||++++. .+++.|.
T Consensus         9 ~~~l~~l~~~g~~~~gGvtR~~~s~~~~~a~~~l~~~~~~~Gl~v~~D~~G--------------Nvig~~~G~~~~~~~   74 (293)
T d1z2la1           9 EETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVG--------------NLYGRLNGTEYPQEV   74 (293)
T ss_dssp             HHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEECTTS--------------CEEEEECCSSEEEEE
T ss_pred             HHHHHHHHhcCCCCCCCeeeccCCHHHHHHHHHHHHHHHHcCCEEEEecCC--------------cEEEEEeccCCCCce
Confidence            44555555555554321 234568889999999999999999999988765              9999985 4555688


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeeccCcc
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGA  177 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~~g~  177 (223)
                      |++.||+||||.+                      |.+|+..|+++.|++++.|++.+..++++|.++.          |
T Consensus        75 v~iGSHlDtV~~g----------------------G~~Dg~~Gv~a~le~~~~l~~~~~~~~~~i~vv~----------f  122 (293)
T d1z2la1          75 VLSGSHIDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVA----------M  122 (293)
T ss_dssp             EEEEEECCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEE----------E
T ss_pred             eEeeeecccCCCC----------------------CCCCCchhHHHHHHHHHHHHhcCCCCCCCceeee----------e
Confidence            9999999999997                      8999999999999999999999999999999887          8


Q ss_pred             cCCCCcCCCCccceecccchhh
Q psy17305        178 SDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       178 ~~~~ahag~~~~~g~~ai~g~~  199 (223)
                      .+|++.+|+....|+.++.|.-
T Consensus       123 ~~EEg~rFg~~~~GS~~~~G~~  144 (293)
T d1z2la1         123 AEEEGSRFPYVFWGSKNIFGLA  144 (293)
T ss_dssp             SCSSCCSSSCSCHHHHHHTTCC
T ss_pred             ecccccccCcccccchhhcCCC
Confidence            8999999998888988888753

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=99.76  E-value=2.2e-18  Score=143.83  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=102.5

Q ss_pred             CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCC
Q psy17305         40 QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP  119 (223)
Q Consensus        40 ~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P  119 (223)
                      .+++++.++.+||.+||+++|++++.+..+              |+++++.+..+.++|++.||+||||.+         
T Consensus        48 a~S~~d~~ar~~l~~~~~~~Gl~v~~D~~G--------------Nv~g~~~G~~~~~~v~~GSHlDTVp~G---------  104 (322)
T d1r3na1          48 AGTALDGAMRDWFTNECESLGCKVKVDKIG--------------NMFAVYPGKNGGKPTATGSHLDTQPEA---------  104 (322)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTCEEEEBTTS--------------CEEEEECCSSCSSCEEEEECCCCCSSB---------
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEeCCC--------------cEEEEecCCCCCCceEecCccccCCcC---------
Confidence            368889999999999999999999998876              999999554445679999999999998         


Q ss_pred             CceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeeccCcccCCCCcCCCCccceecccchhh
Q psy17305        120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTK  199 (223)
Q Consensus       120 ~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~~g~~~~~ahag~~~~~g~~ai~g~~  199 (223)
                                   |.+|+..||++.|++++.|++.++.++.+|.++.          |.+|++-.|+....|+.++.|.-
T Consensus       105 -------------G~~DG~lGV~a~Levl~~l~e~~~~~~~~i~vv~----------f~~EEg~rFg~~~lGS~~~~G~l  161 (322)
T d1r3na1         105 -------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVV----------WFNEEGARFARSCTGSSVWSHDL  161 (322)
T ss_dssp             -------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEE----------CSCSSCSSBSSTTHHHHHHTTSS
T ss_pred             -------------CCcCCccchHHHHHHHHHHhhhccCCCCCcEEEE----------eeccccccccccccccccccCCC
Confidence                         8999999999999999999999999999998887          88999999999999999988754

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Hypothetical protein YsdC, catalytic domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=6.7e-19  Score=145.25  Aligned_cols=115  Identities=16%  Similarity=0.250  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL   99 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il   99 (223)
                      ++.+++|++|++|||+|++      ++++++||+++|+.+|++++.+..+              |+++++++..++|+|+
T Consensus         3 ~~~~~~l~~l~~i~s~sg~------E~~v~~~l~~~l~~~g~~~~~D~~g--------------N~i~~~~g~~~~~~i~   62 (275)
T d1vhea2           3 DETLTMLKDLTDAKGIPGN------EREVRQVMKSYIEPFADEVTTDRLG--------------SLIAKKTGAENGPKIM   62 (275)
T ss_dssp             CHHHHHHHHHHHSCCCTTC------CHHHHHHHHHHHGGGCSEEEECTTC--------------CEEEEEESSTTSCEEE
T ss_pred             HHHHHHHHHHHcCCCCCCC------HHHHHHHHHHHHHHcCCEEEEeCCC--------------cEEEEecCCCCCCcee
Confidence            4678999999999999984      5789999999999999999887654              9999996555578999


Q ss_pred             EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      |.|||||||...        +. ...++..++.|..|||+|++++|++++.|++.+  ++.++.++
T Consensus        63 l~~H~D~v~~~~--------~~-~~~~~~~~~~~~~Dd~~Gva~~l~~~~~l~~~~--~~~~v~~~  117 (275)
T d1vhea2          63 IAGHLDEVPHFE--------FT-VMNNEKFLLAKAWDNRIGCAIAIDVLRNLQNTD--HPNIVYGV  117 (275)
T ss_dssp             EEEECCCCECCC--------CE-ECSSTTEEEETTHHHHHHHHHHHHHHHHHHTSC--CSSEEEEE
T ss_pred             eecccccccccc--------ce-eeecccccccCcccCccCHHHHHHHHHHHhcCC--CCceEEEE
Confidence            999999998753        22 334455555577899999999999999998764  34455433

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase T (tripeptidase), catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=7e-17  Score=133.56  Aligned_cols=132  Identities=15%  Similarity=0.179  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhhccCCCCCCCC----CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC--CC
Q psy17305         20 NKFIENLKEAVAIESVSSSVQ----HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN--DK   93 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~----~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~--~~   93 (223)
                      +++++.|.+||+|||+|+...    ..+++.++++||.++|+++|+++...+..             .|+++.+..  +.
T Consensus         2 ~~~l~~l~~lv~i~S~S~~~~~~~p~~~~e~~~a~~l~~~l~~lG~~~~~id~~-------------g~~~~~~~~~~~~   68 (295)
T d1fnoa4           2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEK-------------GTLMATLPANVEG   68 (295)
T ss_dssp             CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTT-------------CCEEEEECCSSCS
T ss_pred             HHHHHHHHHHccccccCCCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-------------CcEEEEecccCCC
Confidence            468899999999999987543    35678999999999999999987665532             377777643  34


Q ss_pred             CccEEEEEeccccCCCCCC-------------------------CCCCCCCCceeeeCCeEEecCC----CCCchhHHHH
Q psy17305         94 AKHTVLVYGHLDVQPAEKE-------------------------DGWNTEPFVLTLKDEKLYGRGA----SDDKGPVLGW  144 (223)
Q Consensus        94 ~~~~ill~~H~DtVp~~~~-------------------------~~w~~~P~~~~~~~~~lyGrG~----~D~K~gv~~~  144 (223)
                      ..|+++|.+|+||||+...                         +.|..+++.....+.+++++|.    .|+|+|++++
T Consensus        69 ~~~~v~~~~H~Dtv~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~D~k~G~aa~  148 (295)
T d1fnoa4          69 DIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEI  148 (295)
T ss_dssp             CCCCEEEEEECCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCcCCcCccccCceeecccCCCceeccccccccCccccCCceEEeCCcEEECCceeeecccchhhHHHH
Confidence            4689999999999987531                         1244455555667789999995    6999999999


Q ss_pred             HHHHHHHHHccCCCceeeEEe
Q psy17305        145 LHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       145 l~al~~l~~~~~~~~~~i~~~  165 (223)
                      ++|++.+.+.+.+ +.++.+.
T Consensus       149 l~a~~~l~~~~~~-~~~v~~~  168 (295)
T d1fnoa4         149 MTALAVLKGNPIP-HGDIKVA  168 (295)
T ss_dssp             HHHHHHHHSSSCC-CCCEEEE
T ss_pred             HHHHHHHHhcCCC-CCceecc
Confidence            9999999988764 3455544

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase YpdE
species: Shigella flexneri [TaxId: 623]

Probab=99.67  E-value=8.3e-17  Score=131.91  Aligned_cols=111  Identities=18%  Similarity=0.308  Sum_probs=92.3

Q ss_pred             HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305         23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG  102 (223)
Q Consensus        23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~  102 (223)
                      +++|++|+++||+|+.      |++++++++++|+.+|++++.+..+              |+++++++.. .|+|+|.+
T Consensus         3 ~~ll~~l~~~~s~sg~------E~~~~~~~~~~l~~~~~~v~~D~~g--------------Ni~~~~~~~~-~~~v~~~~   61 (264)
T d1yloa2           3 LSLLKALSEADAIASS------EQEVRQILLEEAARLQKEVRFDGLG--------------SVLIRLNEST-GPKVMICA   61 (264)
T ss_dssp             HHHHHHHHHSCCBTTB------CHHHHHHHHHHHHHTTCCEEECTTC--------------CEEEECCCCS-SCEEEEEE
T ss_pred             HHHHHHHHcCCCCCcC------HHHHHHHHHHHHHhcCCEEEEcCCC--------------cEEEEECCCC-CceEEEec
Confidence            5799999999999984      6799999999999999999887654              9999997653 68999999


Q ss_pred             ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |+|||+...        | ....+++++|| +.|+++|+++++++++.|++..  ++.++.+++
T Consensus        62 H~D~~~~~~--------~-~~~~~~~i~g~-a~D~~~gva~lle~~r~l~~~~--~~~~v~~~~  113 (264)
T d1yloa2          62 HMDEVFDTT--------F-QVLPHQRVMGK-AFDDRLSCYLLVTLLRELHDAE--LPAEVWLVA  113 (264)
T ss_dssp             ECCCCECCC--------C-EEETTTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEE
T ss_pred             CcCcccccc--------c-eeccccccccc-cccccccHHHHHHHHHHHhcCC--CCceEEEEE
Confidence            999998752        1 15689999997 5899999999999999997644  455666543

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Endoglucanase TM1049
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=1.4e-17  Score=135.32  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEecc
Q psy17305         25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHL  104 (223)
Q Consensus        25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~  104 (223)
                      .|++|++|||+|+.      ++++++|++++|+++|++++++..+              |+++++++....|+|+|.|||
T Consensus         2 ~l~~l~~i~s~sg~------E~~v~~~~~~~l~~~g~~v~~d~~g--------------Nii~~~~G~~~~~~i~l~aH~   61 (255)
T d2fvga2           2 YLKELSMMPGVSGD------EGKVRDFIKSKIEGLVDNLYTDVLG--------------NLIALKRGRDSSKKLLVSAHM   61 (255)
T ss_dssp             CHHHHHHSCCBTTC------CHHHHHHHHHHHGGGSSEEEECTTS--------------CEEEEECCSEEEEEEEEEEEC
T ss_pred             hHHHHhcCCCCCCC------HHHHHHHHHHHHHHcCCeEEEeCCC--------------CEEEEecCCCCCCceEEEecc
Confidence            47899999999984      5689999999999999999987654              999999654456899999999


Q ss_pred             ccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305        105 DVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV  165 (223)
Q Consensus       105 DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~  165 (223)
                      ||||....          ...+. .+++|+.|+|+|++++|++++.+.    .++.++.++
T Consensus        62 Dtv~~~~~----------~~~~~-~~~~ga~Dd~~Gva~~l~~~~~~~----~~~~~i~~~  107 (255)
T d2fvga2          62 DEVFVSDY----------IEKNG-RAVGKAFDDRAGCSVLIDVLESGV----SPAYDTYFV  107 (255)
T ss_dssp             CBCECCCC----------EEETT-EEEESCHHHHHHHHHHHHHHHTCC----CCSEEEEEE
T ss_pred             ccccccee----------ccccc-cccCCcccchHhHHHHHHHHHHhc----ccccceEEE
Confidence            99998631          23333 455588999999999998877553    344555543

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Putative endoglucanase TM1048, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2.8e-16  Score=127.63  Aligned_cols=111  Identities=14%  Similarity=0.201  Sum_probs=91.0

Q ss_pred             HHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEE
Q psy17305         22 FIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVY  101 (223)
Q Consensus        22 ~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~  101 (223)
                      ..++|++|+++|++|+.      |.++++||.++|++++.+++++..+              |++++++++ ..+.|+|.
T Consensus         3 ~~~~l~~l~~~~~~sg~------E~~v~~~i~~~l~~~~~~~~~d~~g--------------Nvia~~~g~-~~~~i~l~   61 (248)
T d1vhoa2           3 TGKLLMELSNLDGPSGY------ETNVVSYIKSVIEPFVDEAKTTRHG--------------SLIGYKKGK-GIGKLAFF   61 (248)
T ss_dssp             HHHHHHHHHHSCCBTTC------CHHHHHHHHHHHGGGCSEEEECTTS--------------CEEEEECCS-SSCEEEEE
T ss_pred             HHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHHcCCEEEEecCC--------------cEEEEecCC-CCceEEEe
Confidence            35689999999999984      5689999999999999999887654              999998654 35789999


Q ss_pred             eccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305        102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus       102 ~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      ||||||+...          ...++|+++|+ +.|+|+|++++|++++.|.+.+  ++.++.+++
T Consensus        62 aH~D~v~~~~----------~~~~~~~~~~~-a~Dd~~G~a~~l~~~~~l~~~~--~~~~v~~~~  113 (248)
T d1vhoa2          62 AHVDEIIDQT----------AFETNGKVVGK-ALDNRASCGVLVKVLEFLKRYD--HPWDVYVVF  113 (248)
T ss_dssp             EECCBCECCC----------CEEETTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEE
T ss_pred             ccccceeccc----------ccccCCceecc-CCcccHhHHHHHHHHHHHhhcC--CCCceEEEE
Confidence            9999997642          14688999997 5899999999999999998765  455665543

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Deblocking aminopeptidase YhfE
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=5.3e-16  Score=125.13  Aligned_cols=99  Identities=20%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++++++|++|++|||+|++      +.++++||+++|+++|++++++..+              |+++++++....|+|
T Consensus         3 ~~e~le~lk~L~~ips~Sg~------e~~~~~~i~~~l~~~G~~~~~d~~g--------------niia~~~G~~~~~~i   62 (233)
T d2grea2           3 TKETMELIKELVSIPSPSGN------TAKIINFIENYVSEWNVETKRNNKG--------------ALILTVKGKNDAQHR   62 (233)
T ss_dssp             HHHHHHHHHHHHTSCCBTTC------CHHHHHHHHHHTTTSSSEEEECSSS--------------CEEEEECCSEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCCC------HHHHHHHHHHHHHHcCCeEEEecCC--------------CEEEEecCCCccccE
Confidence            46899999999999999994      5689999999999999999886543              899999655457899


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.+|+||                             |+|+|++++|++++.|++.+.++++++.+++
T Consensus        63 ~~~aH~Dt-----------------------------~dk~g~a~~l~~~~~l~~~~~~~~~~i~~~f  101 (233)
T d2grea2          63 LLTAHVDT-----------------------------LDKVSVAILLKLIKRLQDENVTLPYTTHFLI  101 (233)
T ss_dssp             EEEEECCB-----------------------------CTHHHHHHHHHHHHHHHHHTCCCSEEEEEEE
T ss_pred             EEEeccCc-----------------------------cccCcHHHHHHHHHHHHHCCCCCCceEEEEE
Confidence            99999997                             4699999999999999999999999887654

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=99.62  E-value=1.6e-15  Score=125.34  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhccCCCCC--CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         21 KFIENLKEAVAIESVSS--SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        21 ~~i~~l~~lv~i~s~s~--~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      ++.+.|.+|..+.+.+.  +...+++..++++||.+.|+++|++++++.+....   ..    ..||++++++..+.+.|
T Consensus         8 ~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~~---~~----~~Nvi~~~~g~~~~~~i   80 (277)
T d1tkja1           8 NVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGG---AT----GYNLIANWPGGDPNKVL   80 (277)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETT---EE----EEEEEEECSCSEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeeccC---cc----ccCeEEEECCCCCCCEE
Confidence            34444555554433222  23356688899999999999999999887764221   00    15999999654345789


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      +|.+|||||+.+                     +|+.|+++|++++|++++.|++.+.+++++|.+++
T Consensus        81 ~~~aH~D~~~~~---------------------~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~  127 (277)
T d1tkja1          81 MAGAHLDSVSSG---------------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAW  127 (277)
T ss_dssp             EEEEECCCCTTS---------------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred             EEEccccccccc---------------------cccCCCccchHHHHHHHHHHHhhcCCCCcceEEee
Confidence            999999999864                     49999999999999999999999888888888764

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Aeromonas proteolytica [TaxId: 671]

Probab=99.44  E-value=3.9e-13  Score=111.44  Aligned_cols=125  Identities=11%  Similarity=0.196  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcE---EEEecCCCCCCCCCCCCCCcEEEEEcCC-CCC
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATV---EICDIGNQTLPNGESIKYPPVILGNLGN-DKA   94 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~---~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~   94 (223)
                      .+++.+.++.|.++.+-.   ..+.+..++++||.+.|+++|+++   .......    .+..   ..||++++.+ .++
T Consensus        19 ~~~i~~~l~~L~sf~~R~---~~s~~~~~a~~wi~~~~~~~g~~~~~~~~~~~~~----~~~~---~~Nvi~~~~G~~~~   88 (291)
T d1rtqa_          19 ASQITGTISSLESFTNRF---YTTTSGAQASDWIASEWQALSASLPNASVKQVSH----SGYN---QKSVVMTITGSEAP   88 (291)
T ss_dssp             HHHHHHHHHHHHTSSCCC---TTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE----TTEE---EEEEEEEECCSSEE
T ss_pred             HHHHHHHHHHHhCcCCCC---CCChhHHHHHHHHHHHHHHhcCccCCceEEEecC----CCCC---cccEEEEecCCCCC
Confidence            478888888888765422   234477899999999999998753   2111110    0100   1599999954 444


Q ss_pred             ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      .+.|++.+|||+++.+..+.             .-.++|+.|+++|++++|++++.|++.+.+++++|.|++
T Consensus        89 ~~~ivv~aH~Ds~~~~~~~~-------------~~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~i~f~~  147 (291)
T d1rtqa_          89 DEWIVIGGHLDSTIGSHTNE-------------QSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMA  147 (291)
T ss_dssp             EEEEEEEEECCCCSSTTCCT-------------TCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred             CCEEEEEeecCCCCCCCcCC-------------CCCCCCCccchhhHHHHHHHHHHHHHhhcCCcCceEEec
Confidence            57899999999998753222             233569999999999999999999999988888998764

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Glutamate carboxypeptidase II FOLH1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.3e-11  Score=100.24  Aligned_cols=116  Identities=13%  Similarity=0.076  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCccEE
Q psy17305         20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKHTV   98 (223)
Q Consensus        20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~~i   98 (223)
                      +++.+.|+.+.++|...+..    +..++++||++.+++.|+++......... ..+.   ...||+|++++ ..+.+.|
T Consensus        12 ~~~~~~l~~~~~~p~~~gs~----~~~~~~~~i~~~~~~~g~~~~~~~~~~~~-~~~~---~~~Nvi~~i~G~~~~~~~i   83 (304)
T d3bi1a3          12 ENIKKFLYNFTQIPHLAGTE----QNFQLAKQIQSQWKEFGLDSVELAHYDVL-LEVT---RIYNVIGTLRGAVEPDRYV   83 (304)
T ss_dssp             HHHHHHHHHHSSSCCCTTSH----HHHHHHHHHHHHHHHHTCSEEEEEEEEEE-EEEE---EEEEEEEEECCSSEEEEEE
T ss_pred             HHHHHHHHHhccCCCcCCCH----HHHHHHHHHHHHHHHhCCcceeeeeeecc-cCcc---eeEEEEEEEECCCCCCcEE
Confidence            67888999999999877642    56789999999999999975432221100 0000   01499999954 3334679


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHH---HccCCCceeeEEec
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQ---QTKKNVPVNIKEVT  166 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~---~~~~~~~~~i~~~~  166 (223)
                      ++.+|+|++.+                       |+.|+.+|++++|+++++|.   +.+.++.++|.+++
T Consensus        84 i~~aH~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~  131 (304)
T d3bi1a3          84 ILGGHRDSWVF-----------------------GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFAS  131 (304)
T ss_dssp             EEEEECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred             EEEeccccccC-----------------------CCCCCcchhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence            99999999743                       89999999999999998764   45677888888764

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-10  Score=98.12  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHHHHHHhcCCc--EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCC
Q psy17305         42 RPQTINMIHYFADKLKQLGAT--VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP  119 (223)
Q Consensus        42 ~~~~~~~~~~l~~~l~~~G~~--~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P  119 (223)
                      +++..++++||.+.|+++|..  ++.+.........+..   ..||||++++.. .+.|+|.|||||++.++   +...+
T Consensus        49 s~g~~~a~~~i~~~~~~~g~~~~~~~~~f~~~~~~~~~~---~~Nvia~l~g~~-~~~ili~aHyDs~~~~~---~~~~~  121 (329)
T d2afwa1          49 SPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRS---FSNIISTLNPTA-KRHLVLACHYDSKYFSH---WNNRV  121 (329)
T ss_dssp             SHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEE---EEEEEEESSTTS-SEEEEEEEECCCCCCCC---BTTBC
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCeEEEEEEEeccccCCce---eEEEEEEeCCCC-CceEEEEeeeccCCccc---ccccC
Confidence            447889999999999999864  4443332110000100   169999996653 56899999999998752   21222


Q ss_pred             CceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc--------cCCCceeeEEec
Q psy17305        120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT--------KKNVPVNIKEVT  166 (223)
Q Consensus       120 ~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~--------~~~~~~~i~~~~  166 (223)
                      +           +|+.|+.+|++++|++++.|.+.        +.+++.+|.+++
T Consensus       122 ~-----------pGA~DnaSGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~  165 (329)
T d2afwa1         122 F-----------VGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIF  165 (329)
T ss_dssp             C-----------CCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEE
T ss_pred             C-----------CCCCCccHHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEE
Confidence            2           49999999999999999999763        446788888776

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.22  E-value=1.7e-11  Score=99.51  Aligned_cols=137  Identities=9%  Similarity=0.124  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305         19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV   98 (223)
Q Consensus        19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i   98 (223)
                      .++++++-++|.++|..++      +|.+.+++|.++|+++|+++......            ++.+++.+.++.++|+|
T Consensus         4 ~~~li~~rr~lh~~PEl~~------~E~~T~~~i~~~L~~~G~~v~~~~~~------------~tgv~a~~~g~~~gp~I   65 (261)
T d1ysja1           4 HTRLINMRRDLHEHPELSF------QEVETTKKIRRWLEEEQIEILDVPQL------------KTGVIAEIKGREDGPVI   65 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCTT------CCHHHHHHHHHHHHHTTCEECCCTTC------------SSCEEEEEECSSCCCEE
T ss_pred             HHHHHHHHHHHHhCcCcCC------hHHHHHHHHHHHHHHCCCeEEEecCC------------ceEEEEEECCCCcCceE
Confidence            4689999999999999999      57899999999999999987432211            25799998555557999


Q ss_pred             EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-------cccee
Q psy17305         99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT-------GKNVL  171 (223)
Q Consensus        99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~-------g~~~~  171 (223)
                      +|.+|||.+|..+.   +..||. ...+|.++++|.   ....++++.+...|.+....++++|++++       +....
T Consensus        66 alrad~DALp~~e~---~~~~~~-s~~~G~~HaCGH---d~h~a~~lgaA~~l~~~~~~~~G~v~lifqPaEE~~~Ga~~  138 (261)
T d1ysja1          66 AIRADIDALPIQEQ---TNLPFA-SKVDGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAAGARK  138 (261)
T ss_dssp             EEEEECCCBSCCCC---CCCTTC-CSSTTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTCHHHH
T ss_pred             EEEecccccchhhh---ccCccc-cccCCceeccCc---chHHHHHHHHHHHHHHhcccCCCeEEEecccCcccccchHH
Confidence            99999999998632   334564 345667777764   44566677777888877667888898765       22344


Q ss_pred             eccCcccCC
Q psy17305        172 LLPMGASDD  180 (223)
Q Consensus       172 ~~~~g~~~~  180 (223)
                      +++.|..++
T Consensus       139 mi~~G~~d~  147 (261)
T d1ysja1         139 VLEAGVLNG  147 (261)
T ss_dssp             HHHTTTTTT
T ss_pred             HHHcCCccc
Confidence            555555443

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: IAA-amino acid hydrolase, catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=5.9e-11  Score=97.14  Aligned_cols=122  Identities=11%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305         18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT   97 (223)
Q Consensus        18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~   97 (223)
                      ..++++++-|.|-++|..++      +|.+.+++|+++|+++|++++....+             +.+++.++.+ .+|+
T Consensus        11 ~~~~li~~rr~lh~~PEl~~------~E~~T~~~i~~~L~~~g~~~~~~~~~-------------tg~~a~~~~~-~~~~   70 (273)
T d1xmba1          11 VFDWMVKIRRKIHENPELGY------EELETSKLIRSELELIGIKYRYPVAI-------------TGVIGYIGTG-EPPF   70 (273)
T ss_dssp             -----------HHHSCCCTT------CCHHHHHHHHHHHHHHTCCEEEEETT-------------TEEEEEEESS-SSCE
T ss_pred             HHHHHHHHHHHHHhCcCcCC------cHHHHHHHHHHHHHHCCCeEEecCCc-------------eEEEEEECCC-cceE
Confidence            34788999999999999999      57799999999999999998875443             5899999754 3689


Q ss_pred             EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305         98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT  166 (223)
Q Consensus        98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~  166 (223)
                      |+|.++||.+|......|   ||. ....|+++++|..   +.++++|.+.+.|.+....++++|++++
T Consensus        71 i~~rad~Dalp~~e~~~~---~~~-s~~~g~~HaCGHd---~h~a~~l~aa~~l~~~~~~~~g~v~~if  132 (273)
T d1xmba1          71 VALRADMDALPIQEGVEW---EHK-SKIAGKMHACGHD---GHVTMLLGAAKILHEHRHHLQGTVVLIF  132 (273)
T ss_dssp             EEEEEECCCBSCCCCCCS---TTC-CSSTTCBCCSSHH---HHHHHHHHHHHHHHHTGGGCSSEEEEEE
T ss_pred             EEEeccccccccccccCc---ccc-cCCCCcccccccc---hHHHHHHHHHHHHHHhhhcCCCeEEEEE
Confidence            999999999998654434   453 3456889999983   6677777888888887767889998775

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=95.61  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305          7 YLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL   86 (223)
Q Consensus         7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~   86 (223)
                      ....+.+.++.  .++...++.|.+. +..++...+.+...+++||.+.|+++|++..........  +-+    ..||+
T Consensus         6 ~~~~~~~~i~~--~~~~~~i~~l~~~-~~~~R~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~--~~~----~~Nvi   76 (294)
T d1de4c3           6 LKRKLSEKLDS--TDFTSTIKLLNEN-SYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVK--EIK----ILNIF   76 (294)
T ss_dssp             HHHHHHHHHHT--CCHHHHHHHTTST-TTSSCCTTSHHHHHHHHHHHHHHHHTTCSEEEEEEEEEE--EEE----EEEEE
T ss_pred             HHHHHHHhcCh--HHHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccccccccc--CCc----cceEE
Confidence            34455556664  3455666666542 233344456678889999999999999975433211000  000    15999


Q ss_pred             EEcCC-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHH----ccCCCcee
Q psy17305         87 GNLGN-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ----TKKNVPVN  161 (223)
Q Consensus        87 a~~~~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~----~~~~~~~~  161 (223)
                      +.+++ ..+.+.|++.+|+|++.                       +|+.|+.+|++++|++++.|.+    .+.+|.++
T Consensus        77 g~i~G~~~~~~~ivigaH~Ds~~-----------------------~GA~DnasG~a~llelar~l~~~~~~~g~~P~rt  133 (294)
T d1de4c3          77 GVIKGFVEPDHYVVVGAQRDAWG-----------------------PGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRS  133 (294)
T ss_dssp             EEECCSSEEEEEEEEEEECCCSS-----------------------CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEE
T ss_pred             EEEeCCCCCCceEEEEeeccccc-----------------------ccccCCchhHHHHHHHHHHHHhhhhhcCCCCCce
Confidence            99954 33346799999999963                       3899999999999999999965    46778889


Q ss_pred             eEEec
Q psy17305        162 IKEVT  166 (223)
Q Consensus       162 i~~~~  166 (223)
                      |.|++
T Consensus       134 I~f~~  138 (294)
T d1de4c3         134 IIFAS  138 (294)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98764

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Frv operon protein FrvX, catalytic domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=1.3e-07  Score=76.10  Aligned_cols=64  Identities=19%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             HHHHHHHhhccCCCCCCCCCchHHH-HHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305         22 FIENLKEAVAIESVSSSVQHRPQTI-NMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV  100 (223)
Q Consensus        22 ~i~~l~~lv~i~s~s~~~~~~~~~~-~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill  100 (223)
                      -.++|++|+++|++|+      .|. .++++++++++.++.+++.+..|              |+++.+++  .+|+|+|
T Consensus       191 ~~~~l~~l~~~~~~sg------~E~~~v~~~~~~~~~~~~d~~~~D~~G--------------n~~~~~~~--~~~~i~~  248 (255)
T d1y0ya2         191 DYELLKKVVEAPGVSG------YEFLGIRDVVIEEIKDYVDEVKVDKLG--------------NVIAHKKG--EGPKVMI  248 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHcCCCCCC------CccHHHHHHHHHHHHhhCCeEEECCCC--------------CEEEEEcC--CCCEEEE
Confidence            4689999999999999      454 58899999999998888888876              99998864  3689999


Q ss_pred             EeccccC
Q psy17305        101 YGHLDVQ  107 (223)
Q Consensus       101 ~~H~DtV  107 (223)
                      .+|||.|
T Consensus       249 ~aH~Dei  255 (255)
T d1y0ya2         249 AAHMDQI  255 (255)
T ss_dssp             -------
T ss_pred             EeccccC
Confidence            9999986

>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Carboxypeptidase G2
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

Probab=94.07  E-value=0.01  Score=40.29  Aligned_cols=36  Identities=6%  Similarity=0.003  Sum_probs=31.6

Q ss_pred             ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhhhhh
Q psy17305        177 ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAE  215 (223)
Q Consensus       177 ~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~~~  215 (223)
                      +.+.++|||..|+.|+||+.   .+++.+..|..+.++.
T Consensus        10 ~~Gk~~Hag~~P~~g~nAi~---~a~~~i~~l~~~~~~~   45 (113)
T d1cg2a2          10 ITGKASHAGAAPELGVNALV---EASDLVLRTMNIDDKA   45 (113)
T ss_dssp             EECBCEETTSCGGGSBCHHH---HHHHHHHHHGGGCBTT
T ss_pred             EEeECccccCCccccCcchH---HHHHHHHHHHhhhccC
Confidence            45789999999999999999   9999999998886654

>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Peptidase-like beta-alanine synthase
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=83.15  E-value=0.29  Score=32.71  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             ccCCCCcCCCCcc-ceecccchhhHHHHHHHHHHhhhhh
Q psy17305        177 ASDDGAHSQNEKI-DVRNYIEGTKLLAAYLYEISKVTQA  214 (223)
Q Consensus       177 ~~~~~ahag~~~~-~g~~ai~g~~~~a~~~~~l~~l~~~  214 (223)
                      +.+.++|||..|. .+.+|+.   +++..+..+..+...
T Consensus         9 v~G~~aHAGs~P~~~~~da~~---aa~~~i~~l~~~~~~   44 (116)
T d1r3na2           9 VHGVGAHAGTTPWRLRKDALL---MSSKMIVAASEIAQR   44 (116)
T ss_dssp             EECCCEETTTSCGGGCCCHHH---HHHHHHHHHHHHHHH
T ss_pred             EEEECcccCCCcccccchHHH---HHHHHHhhccccccc
Confidence            4578999999995 5779999   888888888776543

>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: IAA-amino acid hydrolase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.89  E-value=0.26  Score=33.29  Aligned_cols=33  Identities=6%  Similarity=0.164  Sum_probs=17.6

Q ss_pred             ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305        177 ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ  213 (223)
Q Consensus       177 ~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~  213 (223)
                      +.+.++|+. .|+.|+||+.   ++++++++|..+..
T Consensus        10 v~Gk~~Has-~P~~g~nai~---~~~~~i~~l~~~~~   42 (119)
T d1xmba2          10 ITGKGGHAA-IPQHTIDPVV---AASSIVLSLQQLVS   42 (119)
T ss_dssp             --------------CCHHHH---HHHHHHHHHHTTCB
T ss_pred             EEeeccccc-CcccCCCHHH---HHHHHHHhhhhccc
Confidence            456789976 5899999999   99999999987743