Psyllid ID: psy17308

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
MLRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSYFGKE
ccccccccccccccccccccHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccc
cccccHHHcccccccccccHHHHHHHHHHHHccHHHHHccccHHHHHccccEEEEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHcEEEEEEccHHHHHHHHHHHHccccccc
mlrdiipfirpklgklheasCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLkdlfspslheqpfwiplisgsvarigAVTLVSPLELVRTKMQSEkmsyfgke
mlrdiipfirpklgklheaSCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSplelvrtkmqsekmsyfgke
MLRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGlaptlllalpatIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSYFGKE
****IIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVR**************
MLRDI****************TDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLK**********PFWIPLISGSVARIGAVTLVSPLELVRT*************
MLRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQ**********
*LRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMS*****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSYFGKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query118 2.2.26 [Sep-21-2011]
Q498U3 337 Solute carrier family 25 yes N/A 0.822 0.287 0.563 1e-23
Q0VCH6 338 Solute carrier family 25 yes N/A 0.796 0.278 0.561 1e-23
Q8BGP6 337 Solute carrier family 25 yes N/A 0.745 0.261 0.597 2e-23
Q7SXW0 359 Solute carrier family 25 yes N/A 0.796 0.261 0.530 2e-23
Q8TBP6 338 Solute carrier family 25 yes N/A 0.745 0.260 0.586 2e-23
Q6DHC3 353 Solute carrier family 25 no N/A 0.796 0.266 0.530 3e-22
Q09461 360 Uncharacterized mitochond yes N/A 0.779 0.255 0.525 2e-21
Q6P316 341 Solute carrier family 25 no N/A 0.796 0.275 0.510 7e-21
Q6DFK2 341 Solute carrier family 25 N/A N/A 0.796 0.275 0.510 4e-20
Q17QI7 359 Solute carrier family 25 no N/A 0.745 0.245 0.478 1e-18
>sp|Q498U3|S2540_RAT Solute carrier family 25 member 40 OS=Rattus norvegicus GN=Slc25a40 PE=2 SV=2 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 6/103 (5%)

Query: 12  KLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFS 71
           K G  H     DAF+KI R EGI SLWSGL PTL++A+PAT+ YF  YEQL   LK    
Sbjct: 81  KPGNFH--GTLDAFLKIVRNEGIKSLWSGLPPTLVMAVPATVIYFTCYEQLSTFLKT--- 135

Query: 72  PSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSY 114
             L E    IP+++G VAR GAVT++SPLEL+RTKMQS+  SY
Sbjct: 136 -KLGENETRIPIVAGIVARFGAVTMISPLELIRTKMQSKTFSY 177

Rattus norvegicus (taxid: 10116)
>sp|Q0VCH6|S2540_BOVIN Solute carrier family 25 member 40 OS=Bos taurus GN=SLC25A40 PE=2 SV=1 Back     alignment and function description
>sp|Q8BGP6|S2540_MOUSE Solute carrier family 25 member 40 OS=Mus musculus GN=Slc25a40 PE=2 SV=1 Back     alignment and function description
>sp|Q7SXW0|S2539_DANRE Solute carrier family 25 member 39 OS=Danio rerio GN=slc25a39 PE=2 SV=1 Back     alignment and function description
>sp|Q8TBP6|S2540_HUMAN Solute carrier family 25 member 40 OS=Homo sapiens GN=SLC25A40 PE=2 SV=1 Back     alignment and function description
>sp|Q6DHC3|S2540_DANRE Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1 Back     alignment and function description
>sp|Q09461|YQ51_CAEEL Uncharacterized mitochondrial carrier C16C10.1 OS=Caenorhabditis elegans GN=C16C10.1 PE=3 SV=2 Back     alignment and function description
>sp|Q6P316|S2540_XENTR Solute carrier family 25 member 40 OS=Xenopus tropicalis GN=slc25a40 PE=2 SV=1 Back     alignment and function description
>sp|Q6DFK2|S2540_XENLA Solute carrier family 25 member 40 OS=Xenopus laevis GN=slc25a40 PE=2 SV=1 Back     alignment and function description
>sp|Q17QI7|S2539_BOVIN Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query118
91076760 355 PREDICTED: similar to mitochondrial carr 0.872 0.290 0.625 2e-30
350411414 336 PREDICTED: solute carrier family 25 memb 0.779 0.273 0.646 4e-30
307181255 369 Solute carrier family 25 member 40 [Camp 0.779 0.249 0.632 5e-30
322791575 354 hypothetical protein SINV_01341 [Solenop 0.779 0.259 0.642 7e-30
383854056 331 PREDICTED: solute carrier family 25 memb 0.779 0.277 0.626 1e-29
307203937 369 Solute carrier family 25 member 40 [Harp 0.779 0.249 0.632 2e-29
340729730 332 PREDICTED: solute carrier family 25 memb 0.779 0.277 0.636 2e-29
345490362 370 PREDICTED: solute carrier family 25 memb 0.779 0.248 0.639 3e-29
242006336 373 mitochondrial carrier protein, putative 0.779 0.246 0.613 4e-29
328778675 332 PREDICTED: solute carrier family 25 memb 0.779 0.277 0.626 2e-28
>gi|91076760|ref|XP_973617.1| PREDICTED: similar to mitochondrial carrier protein [Tribolium castaneum] gi|270001851|gb|EEZ98298.1| hypothetical protein TcasGA2_TC000750 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 9/112 (8%)

Query: 8   FIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLK 67
           F RP     H     DAFIKI++ EGI SLWSGL PTL+LALP TI YFVTYEQLR++LK
Sbjct: 78  FQRPG----HFNGTIDAFIKITKNEGIYSLWSGLGPTLVLALPTTILYFVTYEQLRLRLK 133

Query: 68  DLFSPSLHE-----QPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSY 114
           +L++ +  E     QP+WIPLISG+ ARI AV++VSPLEL+RTKMQS K+SY
Sbjct: 134 NLYNRNNVEGQERKQPYWIPLISGATARIFAVSVVSPLELIRTKMQSRKISY 185

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350411414|ref|XP_003489342.1| PREDICTED: solute carrier family 25 member 40-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307181255|gb|EFN68945.1| Solute carrier family 25 member 40 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322791575|gb|EFZ15947.1| hypothetical protein SINV_01341 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383854056|ref|XP_003702538.1| PREDICTED: solute carrier family 25 member 40-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307203937|gb|EFN82844.1| Solute carrier family 25 member 40 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340729730|ref|XP_003403149.1| PREDICTED: solute carrier family 25 member 40-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345490362|ref|XP_001606469.2| PREDICTED: solute carrier family 25 member 40-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242006336|ref|XP_002424007.1| mitochondrial carrier protein, putative [Pediculus humanus corporis] gi|212507299|gb|EEB11269.1| mitochondrial carrier protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328778675|ref|XP_623703.2| PREDICTED: solute carrier family 25 member 40-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query118
UNIPROTKB|Q0VCH6 338 SLC25A40 "Solute carrier famil 0.796 0.278 0.479 1.3e-17
UNIPROTKB|G5E5Z7 250 G5E5Z7 "Uncharacterized protei 0.745 0.352 0.5 1.6e-17
RGD|1308774 337 Slc25a40 "solute carrier famil 0.822 0.287 0.485 2.1e-17
UNIPROTKB|Q498U3 337 Slc25a40 "Solute carrier famil 0.822 0.287 0.485 2.1e-17
UNIPROTKB|F1LNM8 248 Slc25a40 "Solute carrier famil 0.745 0.354 0.510 3.2e-17
MGI|MGI:2442486 337 Slc25a40 "solute carrier famil 0.745 0.261 0.510 3.7e-17
UNIPROTKB|Q8TBP6 338 SLC25A40 "Solute carrier famil 0.745 0.260 0.5 4.9e-17
FB|FBgn0031039 387 Shawn "Shawn" [Drosophila mela 0.779 0.237 0.475 9.7e-17
UNIPROTKB|I3L974 338 SLC25A40 "Uncharacterized prot 0.745 0.260 0.489 1.5e-16
ZFIN|ZDB-GENE-040426-1250 359 slc25a39 "solute carrier famil 0.796 0.261 0.459 2e-16
UNIPROTKB|Q0VCH6 SLC25A40 "Solute carrier family 25 member 40" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 216 (81.1 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 47/98 (47%), Positives = 59/98 (60%)

Query:    17 HEASCTDAFIKISRTEGILSLWSGXXXXXXXXXXXXIAYFVTYEQLRVKLKDLFSPSLHE 76
             H     DAF+KI R EGI SLWSG            + YF  Y+QL   L+      L E
Sbjct:    83 HFQGTLDAFLKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLTALLRS----KLGE 138

Query:    77 QPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMSY 114
                 IP+++G VAR+GAVT++SPLEL+RTKMQS+K SY
Sbjct:   139 NESRIPIVAGIVARLGAVTVISPLELIRTKMQSKKFSY 176
GO:0005743 "mitochondrial inner membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
UNIPROTKB|G5E5Z7 G5E5Z7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308774 Slc25a40 "solute carrier family 25, member 40" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q498U3 Slc25a40 "Solute carrier family 25 member 40" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNM8 Slc25a40 "Solute carrier family 25 member 40" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2442486 Slc25a40 "solute carrier family 25, member 40" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBP6 SLC25A40 "Solute carrier family 25 member 40" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0031039 Shawn "Shawn" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|I3L974 SLC25A40 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1250 slc25a39 "solute carrier family 25, member 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q498U3S2540_RATNo assigned EC number0.56310.82200.2878yesN/A
Q8TBP6S2540_HUMANNo assigned EC number0.58690.74570.2603yesN/A
Q0VCH6S2540_BOVINNo assigned EC number0.56120.79660.2781yesN/A
Q8BGP6S2540_MOUSENo assigned EC number0.59780.74570.2611yesN/A
Q09461YQ51_CAEELNo assigned EC number0.52520.77960.2555yesN/A
Q7SXW0S2539_DANRENo assigned EC number0.53060.79660.2618yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query118
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 3e-11
PTZ00168 259 PTZ00168, PTZ00168, mitochondrial carrier protein; 8e-06
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-05
PTZ00169 300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-04
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 55.0 bits (133), Expect = 3e-11
 Identities = 22/46 (47%), Positives = 25/46 (54%)

Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKD 68
          D F KI + EGI  L+ GL P LL   PA   YF TYE L+  L  
Sbjct: 49 DCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94

Length = 96
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 118
KOG0768|consensus323 99.93
KOG0752|consensus320 99.93
KOG0753|consensus317 99.92
KOG0764|consensus 299 99.92
PTZ00168259 mitochondrial carrier protein; Provisional 99.92
KOG0760|consensus302 99.91
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.91
KOG0762|consensus311 99.91
PTZ00169 300 ADP/ATP transporter on adenylate translocase; Prov 99.9
KOG0764|consensus299 99.88
KOG0757|consensus319 99.88
KOG0758|consensus297 99.87
KOG0758|consensus 297 99.86
KOG0766|consensus297 99.86
KOG0752|consensus 320 99.86
KOG0760|consensus 302 99.85
KOG0753|consensus 317 99.85
KOG0761|consensus361 99.85
KOG0754|consensus 294 99.85
KOG0759|consensus286 99.84
KOG0750|consensus304 99.84
KOG0754|consensus294 99.82
KOG0770|consensus 353 99.82
KOG0751|consensus 694 99.82
PTZ00168 259 mitochondrial carrier protein; Provisional 99.82
KOG0769|consensus 308 99.82
KOG0762|consensus 311 99.81
KOG0759|consensus 286 99.81
KOG0770|consensus353 99.8
KOG0765|consensus333 99.78
KOG0761|consensus 361 99.77
KOG0756|consensus299 99.77
KOG0757|consensus 319 99.75
KOG0749|consensus298 99.74
KOG0767|consensus 333 99.74
KOG0763|consensus 301 99.73
KOG0763|consensus301 99.72
KOG0036|consensus463 99.68
KOG0755|consensus320 99.67
KOG0766|consensus 297 99.65
KOG0767|consensus333 99.64
KOG0751|consensus 694 99.63
KOG0036|consensus 463 99.63
KOG0765|consensus 333 99.58
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.58
KOG0755|consensus 320 99.53
KOG0768|consensus 323 99.47
KOG0750|consensus 304 99.4
KOG0769|consensus308 99.36
KOG0749|consensus 298 99.35
KOG0756|consensus 299 99.29
KOG2745|consensus321 99.24
KOG1519|consensus297 99.09
KOG2745|consensus 321 98.65
KOG1519|consensus 297 98.62
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 98.39
KOG2954|consensus427 97.57
KOG2954|consensus 427 95.34
>KOG0768|consensus Back     alignment and domain information 
Probab=99.93  E-value=5.5e-26  Score=154.34  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=101.6

Q ss_pred             cchhhhhhhhhccCCCcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCcchHH
Q psy17308          2 LRDIIPFIRPKLGKLHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWI   81 (118)
Q Consensus         2 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (118)
                      ++.+.|.+|+|+|..+..+..+.++.|+++||++|||||+.++++|.+|...++|++||.+|..+....+.   ....+.
T Consensus       153 irvP~EvvKQR~Q~~~~~~~~~~~~~i~~~~G~~GlYrG~gstl~ReiPf~~iqf~lyE~lK~~~~~~~~~---e~~~~e  229 (323)
T KOG0768|consen  153 IRVPTEVVKQRAQAGQFERLCQILRSIISKEGFRGLYRGYGSTLLREIPFSAIQFPLYEQLKKTVLPATGR---ELEPLE  229 (323)
T ss_pred             hhchHHHHHHHHHhhccchHHHHHHHHHHhhccchhhhhhhHHHhhcCCHHHHHhHHHHHHHHHHHHhccc---ccCCHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999877652   567789


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhcccc
Q psy17308         82 PLISGSVARIGAVTLVSPLELVRTKMQSEKMS  113 (118)
Q Consensus        82 ~~~~g~~a~~~~~~~~~P~dvvktrlq~~~~~  113 (118)
                      ..++|.+||.+++.+++|+||||||||+++..
T Consensus       230 ~a~~Ga~AG~itA~lTTPlDViKTRiM~~~~~  261 (323)
T KOG0768|consen  230 GALCGALAGGITAALTTPLDVIKTRIMLAKHG  261 (323)
T ss_pred             HHHHHHHhhhHHhhcCChHHHHHHHHhhcccc
Confidence            99999999999999999999999999998753

>KOG0752|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query118
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 1e-15
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 3e-14
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 2e-09
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 8e-15
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-14
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-06
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 23  DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIP 82
              + + RTEG  SL++GL   L   +         Y+     +K  ++           
Sbjct: 52  GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDS----VKQFYTKGSEHAGIGSR 107

Query: 83  LISGSVARIGAVTLVSPLELVRTKMQSE 110
           L++GS     AV +  P ++V+ + Q++
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQ 135
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query118
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 99.92
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.92
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 99.92
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 99.92
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=99.92  E-value=6.7e-25  Score=150.75  Aligned_cols=108  Identities=20%  Similarity=0.309  Sum_probs=95.9

Q ss_pred             cchhhhhhhhhccCC-------CcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q psy17308          2 LRDIIPFIRPKLGKL-------HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSL   74 (118)
Q Consensus         2 ~~~~~~~~k~~~~~~-------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (118)
                      +..++|.+|+|+|..       +|+++++++++|+++||++|||||+.|++++.++..+++|.+||.+++.+.+....  
T Consensus       121 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~--  198 (303)
T 2lck_A          121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM--  198 (303)
T ss_dssp             HSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC--
T ss_pred             HcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence            457899999998742       58999999999999999999999999999999999999999999999988754321  


Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccc
Q psy17308         75 HEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKM  112 (118)
Q Consensus        75 ~~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~~  112 (118)
                       ..+.+..+++|++||++++++++|+|+||+|||.+..
T Consensus       199 -~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~  235 (303)
T 2lck_A          199 -TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL  235 (303)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             -CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence             3456788999999999999999999999999999864
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 118
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 9e-09
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-06
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 9e-09
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 20  SCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQL 62
              D + KI++ EG  + + G    +L  +       V Y+++
Sbjct: 251 GTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEI 292
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query118
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.85
d1okca_ 292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.84
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=99.85  E-value=3e-21  Score=129.73  Aligned_cols=105  Identities=18%  Similarity=0.240  Sum_probs=92.4

Q ss_pred             chhhhhhhhhccC--------CCcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q psy17308          3 RDIIPFIRPKLGK--------LHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSL   74 (118)
Q Consensus         3 ~~~~~~~k~~~~~--------~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (118)
                      ..++|.+|++++.        .++.+++++++.++++||+++||+|+.+++++.++.++++|..||.+|+.+.+..    
T Consensus       129 ~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~----  204 (292)
T d1okca_         129 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----  204 (292)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----
T ss_pred             hhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccccc----
Confidence            3578888888653        3578999999999999999999999999999999999999999999998776554    


Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccc
Q psy17308         75 HEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKM  112 (118)
Q Consensus        75 ~~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~~  112 (118)
                       .......++++.+++.+++++++|+||||+|||.+..
T Consensus       205 -~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~  241 (292)
T d1okca_         205 -NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG  241 (292)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             -ccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCC
Confidence             3456778899999999999999999999999998864
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure