Psyllid ID: psy17309
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | 2.2.26 [Sep-21-2011] | |||||||
| Q6JEL3 | 608 | Kelch-like protein 10 OS= | yes | N/A | 0.587 | 0.796 | 0.512 | 1e-151 | |
| Q9D5V2 | 608 | Kelch-like protein 10 OS= | yes | N/A | 0.587 | 0.796 | 0.512 | 1e-151 | |
| Q6JEL2 | 608 | Kelch-like protein 10 OS= | yes | N/A | 0.587 | 0.796 | 0.512 | 1e-150 | |
| B4J045 | 624 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.807 | 0.331 | 2e-82 | |
| B4QLQ2 | 623 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.808 | 0.331 | 3e-82 | |
| B3NDN0 | 623 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.808 | 0.331 | 4e-82 | |
| B4L0G9 | 617 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.816 | 0.331 | 5e-82 | |
| B4PD06 | 623 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.808 | 0.331 | 5e-82 | |
| B4HIK1 | 623 | Kelch-like protein diablo | N/A | N/A | 0.611 | 0.808 | 0.331 | 5e-82 | |
| Q9VUU5 | 623 | Kelch-like protein diablo | no | N/A | 0.611 | 0.808 | 0.331 | 5e-82 |
| >sp|Q6JEL3|KLH10_RAT Kelch-like protein 10 OS=Rattus norvegicus GN=Klhl10 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/486 (51%), Positives = 338/486 (69%), Gaps = 2/486 (0%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + IT DNV LL A D F + CC+F+K NC GI F+ ++C +L
Sbjct: 98 YTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELR 157
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ +IL NF ++ + S E + +S EL++II DELNVK E+ V+E I++WI +DP+N
Sbjct: 158 QKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQN 217
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K +YDL + +
Sbjct: 218 RKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNS 277
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
+ P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV + + PRAYHG A
Sbjct: 278 DFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNV-TCEEESPRAYHGAA 335
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
+ +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS V + IYAMGG++
Sbjct: 336 YLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLSNFIYAMGGFD 395
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGFNG+ CL + EVY+
Sbjct: 396 GYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNT 455
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+PV TW +P M+N
Sbjct: 456 ESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFN 515
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+IYRSALS CV+ GL
Sbjct: 516 PRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGL 575
Query: 746 PNVYDY 751
NV +Y
Sbjct: 576 ANVGEY 581
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9D5V2|KLH10_MOUSE Kelch-like protein 10 OS=Mus musculus GN=Klhl10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/486 (51%), Positives = 338/486 (69%), Gaps = 2/486 (0%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + IT DNV LL A D F + CC+F+K NC GI F+ ++C +L
Sbjct: 98 YTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELR 157
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ +IL NF ++ + S E + +S EL++II DELNVK E+ V+E I++WI +DP+N
Sbjct: 158 QKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQN 217
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K +YDL + +
Sbjct: 218 RKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNS 277
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
+ P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV + + PRAYHG A
Sbjct: 278 DFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNV-TCEEESPRAYHGAA 335
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
+ +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS V + IYAMGG++
Sbjct: 336 YLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLSNFIYAMGGFD 395
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGFNG+ CL + EVY+
Sbjct: 396 GYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNT 455
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+PV TW +P M+N
Sbjct: 456 ESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFN 515
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+IYRSALS CV+ GL
Sbjct: 516 PRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGL 575
Query: 746 PNVYDY 751
NV +Y
Sbjct: 576 ANVGEY 581
|
Mus musculus (taxid: 10090) |
| >sp|Q6JEL2|KLH10_HUMAN Kelch-like protein 10 OS=Homo sapiens GN=KLHL10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/486 (51%), Positives = 338/486 (69%), Gaps = 2/486 (0%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + IT DNV LL A D F + CC+F+K NC GI F+ ++C +L
Sbjct: 98 YTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELR 157
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ +IL NF ++ + S E + +S EL++II DELNVK E+ V+E I++WI +DP+N
Sbjct: 158 QKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQN 217
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K +YDL + +
Sbjct: 218 RKQHISILLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNS 277
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
+ P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV + + PRAYHG A
Sbjct: 278 DFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNV-TCEEESPRAYHGAA 335
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
+ +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS V + IYAMGG++
Sbjct: 336 YLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLGNFIYAMGGFD 395
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGFNG+ CL + EVY+
Sbjct: 396 GYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNT 455
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+PV TW +P M+N
Sbjct: 456 ESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFN 515
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+IYRSALS CV+ GL
Sbjct: 516 PRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGL 575
Query: 746 PNVYDY 751
NV +Y
Sbjct: 576 ANVEEY 581
|
Homo sapiens (taxid: 9606) |
| >sp|B4J045|KLHDB_DROGR Kelch-like protein diablo OS=Drosophila grimshawi GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 266/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 108 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 167
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 168 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 226
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ +R++H+ +++++RL LL +F V V+S
Sbjct: 227 ELNVRSEEQVFNAVMSWLKYNVADRRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 286
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 287 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 344
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 345 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 401
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 402 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 461
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 462 VLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVGGRD 521
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 522 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 581
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 582 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 613
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila grimshawi (taxid: 7222) |
| >sp|B4QLQ2|KLHDB_DROSI Kelch-like protein diablo OS=Drosophila simulans GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 266/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 107 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 166
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 167 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 225
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 226 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 285
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 286 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 343
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 344 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV + +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 401 APTTSCRTSVGVAVLDEFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 460
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 461 VLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRD 520
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 521 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 580
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 581 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 612
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila simulans (taxid: 7240) |
| >sp|B3NDN0|KLHDB_DROER Kelch-like protein diablo OS=Drosophila erecta GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 265/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 107 ESRQTEVTIRDIDENAMELLIDFCYTAHIMVEESNVQTLLPAACLLQLVEIQDICCEFLK 166
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 167 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 225
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 226 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 285
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 286 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 343
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 344 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 401 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 460
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 461 VLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRD 520
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 521 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 580
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 581 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 612
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila erecta (taxid: 7220) |
| >sp|B4L0G9|KLHDB_DROMO Kelch-like protein diablo OS=Drosophila mojavensis GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 265/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 108 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 167
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 168 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 226
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 227 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 286
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 287 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 344
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 345 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 401
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 402 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 461
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 462 VLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVGGRD 521
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 522 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 581
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 582 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 613
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila mojavensis (taxid: 7230) |
| >sp|B4PD06|KLHDB_DROYA Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 265/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 107 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 166
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 167 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 225
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 226 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 285
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 286 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 343
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 344 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 401 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 460
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 461 VLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRD 520
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 521 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 580
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 581 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 612
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila yakuba (taxid: 7245) |
| >sp|B4HIK1|KLHDB_DROSE Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 265/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 107 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 166
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 167 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 225
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 226 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 285
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 286 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 343
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 344 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 401 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 460
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 461 VLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRD 520
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 521 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 580
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 581 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 612
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila sechellia (taxid: 7238) |
| >sp|Q9VUU5|KLHDB_DROME Kelch-like protein diablo OS=Drosophila melanogaster GN=dbo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 265/513 (51%), Gaps = 9/513 (1%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 107 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 166
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSD 361
R P NC GI F+ H C++L K+ NF +V ESEE + + +L +II SD
Sbjct: 167 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 225
Query: 362 ELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
ELNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 226 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 285
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD 481
CR ++ E +L + + G P E+LFA+GGW G VE +D
Sbjct: 286 ACRDLVDEAKNYLLLPQERPLMQGPRTRPRKPT--RRGEVLFAVGGWCSGDAIASVERFD 343
Query: 482 TRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EI 539
+ + W V PM R G AV+ +Y +GG DG Y NS ++ T W ++
Sbjct: 344 PQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV 400
Query: 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 599
AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R +
Sbjct: 401 APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVA 460
Query: 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659
L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +GG +
Sbjct: 461 VLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRD 520
Query: 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719
+ + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E YD
Sbjct: 521 DCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEVYDP 580
Query: 720 KTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+T++W MN YR +M P +Y+
Sbjct: 581 ETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 612
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May have a role in synapse differentiation and growth. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| 110748803 | 661 | PREDICTED: kelch-like protein 10 [Apis m | 0.608 | 0.757 | 0.719 | 0.0 | |
| 340719078 | 658 | PREDICTED: kelch-like protein 10-like [B | 0.608 | 0.761 | 0.719 | 0.0 | |
| 350423278 | 658 | PREDICTED: kelch-like protein 10-like [B | 0.608 | 0.761 | 0.719 | 0.0 | |
| 380013558 | 661 | PREDICTED: kelch-like protein 10 [Apis f | 0.608 | 0.757 | 0.717 | 0.0 | |
| 242014272 | 633 | conserved hypothetical protein [Pediculu | 0.643 | 0.837 | 0.677 | 0.0 | |
| 91090540 | 669 | PREDICTED: similar to CG12423 CG12423-PA | 0.618 | 0.762 | 0.692 | 0.0 | |
| 307168569 | 659 | Kelch-like protein 10 [Camponotus florid | 0.611 | 0.764 | 0.701 | 0.0 | |
| 383859702 | 701 | PREDICTED: kelch-like protein 10-like [M | 0.668 | 0.786 | 0.611 | 0.0 | |
| 357618938 | 687 | putative Kelch-like protein 10 [Danaus p | 0.638 | 0.765 | 0.669 | 0.0 | |
| 345485137 | 628 | PREDICTED: kelch-like protein 10-like [N | 0.586 | 0.769 | 0.578 | 0.0 |
| >gi|110748803|ref|XP_395435.3| PREDICTED: kelch-like protein 10 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 430/506 (84%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R +++ +NV LL+ D+ + D CC+++K+ P NC I+ F+R+HFCK LE
Sbjct: 109 YLRSINVNNENVCQLLVTADYLNILGVLDFCCEYLKQNLAPENCISIMRFAREHFCKGLE 168
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+Y++R+FV VA+ SEEI+ + +EL +I +DELNVKSE+TVW+L+++WIDYDP++
Sbjct: 169 NSAYRYVMRHFVQVAQRSEEILDLPIEELTTLIGADELNVKSEDTVWDLVLKWIDYDPQS 228
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK +IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYDLE+I Q DG
Sbjct: 229 RKDYIVDLMKNIRLGLLDTQFFLENVKDHPYVTGNEACRPIIIETLKFLYDLEIITQKDG 288
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTP+IARPRVPHEILFAIGGWSG SPT+F+ETYDTRADRWVK+++VDP+GPRAYHGTA
Sbjct: 289 EVPTPKIARPRVPHEILFAIGGWSGRSPTNFIETYDTRADRWVKVEEVDPIGPRAYHGTA 348
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+G+NIYVIGGFDG +Y+NSCRCFNAVTKVW+E+APMN +RCYVS AV D+IYAMGGY+
Sbjct: 349 VVGFNIYVIGGFDGADYFNSCRCFNAVTKVWREVAPMNARRCYVSVAVLNDLIYAMGGYD 408
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQN+ E+YNY NQWSLIAPMN +RSDASATTL KIYITGGFNGH CLNS EVYDP
Sbjct: 409 GYYRQNTAERYNYKTNQWSLIAPMNCQRSDASATTLNDKIYITGGFNGHECLNSAEVYDP 468
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSGVSCIAYH +YVIGGFNG+SRMC+GEKYNP T W+ +PDMYN
Sbjct: 469 ETNQWTIIAPMRSRRSGVSCIAYHNHVYVIGGFNGISRMCSGEKYNPATDVWTPIPDMYN 528
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMN+YRSALSACVIMGL
Sbjct: 529 SRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNVYRSALSACVIMGL 588
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIE 771
PNV DYIH+HR+ LMEEKRQKLLA+E
Sbjct: 589 PNVNDYIHKHRERLMEEKRQKLLALE 614
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340719078|ref|XP_003397984.1| PREDICTED: kelch-like protein 10-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 430/506 (84%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R +++ +NV LL+ D+ + D CC+++K+ P NC I+ F+R+HFCK LE
Sbjct: 109 YLRSINVNNENVCQLLVTADYLNILGVLDFCCEYLKQNLAPENCISIMRFAREHFCKGLE 168
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+Y++R+FV VA+ SEEI+ + +EL +I +DELNVKSE+TVWEL+++WIDYDP++
Sbjct: 169 NSAYRYVMRHFVQVAQRSEEILDLPIEELTALIGADELNVKSEDTVWELVLKWIDYDPQS 228
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK+ IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYDLE+I Q DG
Sbjct: 229 RKEFIVDLMKNIRLGLLDTQFFLENVKDHPYVTGNEACRPIIIETLKFLYDLEIITQKDG 288
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTP+IARPRVPHEILFAIGGWSG SPT+F+ETYDTRADRWVK+++VDP+GPRAYHGTA
Sbjct: 289 EVPTPKIARPRVPHEILFAIGGWSGRSPTNFIETYDTRADRWVKVEEVDPIGPRAYHGTA 348
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+G+NIYVIGGFDG +Y+NSCRCFNAVTK+W+E+APMN +RCYVS AV D+IYAMGGY+
Sbjct: 349 VVGFNIYVIGGFDGADYFNSCRCFNAVTKIWREVAPMNARRCYVSVAVLNDLIYAMGGYD 408
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQ++ E+YNY NQWSLIAPMN +RSDASATTL KIYITGGFNGH CLNS EVYDP
Sbjct: 409 GYYRQSTAERYNYKTNQWSLIAPMNCQRSDASATTLNDKIYITGGFNGHECLNSAEVYDP 468
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSGVSCIAYH +YVIGGFNG+SRMC+GEKYNP T WS +PDMYN
Sbjct: 469 ETNQWTMIAPMRSRRSGVSCIAYHNNVYVIGGFNGISRMCSGEKYNPATDIWSPIPDMYN 528
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMN+YRSALSACVIMGL
Sbjct: 529 SRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNVYRSALSACVIMGL 588
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIE 771
PNV DYIH+HR+ LMEEKRQKLLA+E
Sbjct: 589 PNVNDYIHKHRERLMEEKRQKLLALE 614
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423278|ref|XP_003493429.1| PREDICTED: kelch-like protein 10-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 430/506 (84%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R +++ +NV LL+ D+ + D CC+++K+ P NC I+ F+R+HFCK LE
Sbjct: 109 YLRSINVNNENVCQLLVTADYLNILGVLDFCCEYLKQNLAPENCISIMRFAREHFCKGLE 168
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+Y++R+FV VA+ SEEI+ + +EL +I +DELNVKSE+TVWEL+++WIDYDP++
Sbjct: 169 NSAYRYVMRHFVQVAQRSEEILDLPIEELTALIGADELNVKSEDTVWELVLKWIDYDPQS 228
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK+ IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYDLE+I Q DG
Sbjct: 229 RKEFIVDLMKNIRLGLLDTQFFLENVKDHPYVTGNEACRPIIIETLKFLYDLEIITQKDG 288
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTP+IARPRVPHEILFAIGGWSG SPT+F+ETYDTRADRWVK+++VDP+GPRAYHGTA
Sbjct: 289 EVPTPKIARPRVPHEILFAIGGWSGRSPTNFIETYDTRADRWVKVEEVDPIGPRAYHGTA 348
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+G+NIYVIGGFDG +Y+NSCRCFNAVTK+W+E+APMN +RCYVS AV D+IYAMGGY+
Sbjct: 349 VVGFNIYVIGGFDGADYFNSCRCFNAVTKIWREVAPMNARRCYVSVAVLNDLIYAMGGYD 408
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQ++ E+YNY NQWSLIAPMN +RSDASATTL KIYITGGFNGH CLNS EVYDP
Sbjct: 409 GYYRQSTAERYNYKTNQWSLIAPMNCQRSDASATTLNDKIYITGGFNGHECLNSAEVYDP 468
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSGVSCIAYH +YVIGGFNG+SRMC+GEKYNP T WS +PDMYN
Sbjct: 469 ETNQWTMIAPMRSRRSGVSCIAYHNNVYVIGGFNGISRMCSGEKYNPATDIWSPIPDMYN 528
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMN+YRSALSACVIMGL
Sbjct: 529 SRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNVYRSALSACVIMGL 588
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIE 771
PNV DYIH+HR+ LMEEKRQKLLA+E
Sbjct: 589 PNVNDYIHKHRERLMEEKRQKLLALE 614
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380013558|ref|XP_003690820.1| PREDICTED: kelch-like protein 10 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/506 (71%), Positives = 429/506 (84%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R +++ +NV LL+ D+ + D CC+++K+ P NC I+ F+R+HFCK LE
Sbjct: 109 YLRSINVNNENVCQLLVTADYLNILGVLDFCCEYLKQNLAPENCISIMRFAREHFCKGLE 168
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+Y++R+FV VA+ SEEI+ + +EL +I +DELNVKSE+TVW+L+++WIDYD ++
Sbjct: 169 NSAYRYVMRHFVQVAQRSEEILDLPIEELTTLIGADELNVKSEDTVWDLVLKWIDYDSQS 228
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK +IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYDLE+I Q DG
Sbjct: 229 RKDYIVDLMKNIRLGLLDTQFFLENVKDHPYVTGNEACRPIIIETLKFLYDLEIITQKDG 288
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTP+IARPRVPHEILFAIGGWSG SPT+F+ETYDTRADRWVK+++VDP+GPRAYHGTA
Sbjct: 289 EVPTPKIARPRVPHEILFAIGGWSGRSPTNFIETYDTRADRWVKVEEVDPIGPRAYHGTA 348
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+G+NIYVIGGFDG +Y+NSCRCFNAVTKVW+E+APMN +RCYVS AV D+IYAMGGY+
Sbjct: 349 VVGFNIYVIGGFDGADYFNSCRCFNAVTKVWREVAPMNARRCYVSVAVLNDLIYAMGGYD 408
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQN+ E+YNY NQWSLIAPMN +RSDASATTL KIYITGGFNGH CLNS EVYDP
Sbjct: 409 GYYRQNTAERYNYKTNQWSLIAPMNCQRSDASATTLNDKIYITGGFNGHECLNSAEVYDP 468
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I PMR RRSGVSCIAYH +YVIGGFNG+SRMC+GEKYNP T W+ +PDMYN
Sbjct: 469 ETNQWTIIAPMRSRRSGVSCIAYHNHVYVIGGFNGISRMCSGEKYNPATDVWTPIPDMYN 528
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMN+YRSALSACVIMGL
Sbjct: 529 SRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNVYRSALSACVIMGL 588
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIE 771
PNV DYIH+HR+ LMEEKRQKLLA+E
Sbjct: 589 PNVNDYIHKHRERLMEEKRQKLLALE 614
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014272|ref|XP_002427815.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512284|gb|EEB15077.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/531 (67%), Positives = 437/531 (82%), Gaps = 1/531 (0%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + +T NV +LL+ D+ C+ +LCC+++K + P NC G++ F+R+HFC LE
Sbjct: 104 YLRTIELTPTNVYTLLVTADYLCVIGVLNLCCEYLKSILKPENCIGVMRFAREHFCTSLE 163
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ YI+RNF + +S+E++ + +EL+ +I +DELNVK EE VWE +++WI++D +N
Sbjct: 164 KEAWMYIMRNFSQLMNKSQELLELPLEELKAMIGADELNVKGEEIVWETVLKWIEFDVDN 223
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK IV LM+NIRLGLLET+FF EKVK HPYV CRP+IIET +FLYDLE+I Q DG
Sbjct: 224 RKPFIVELMRNIRLGLLETQFFLEKVKDHPYVAGNEACRPVIIETLRFLYDLEMITQKDG 283
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTPEIARPRVPHEILFAIGGWSGGSPT+++ETYDTRADRWV++++VDP GPRAYHGTA
Sbjct: 284 EVPTPEIARPRVPHEILFAIGGWSGGSPTNYIETYDTRADRWVRVEEVDPTGPRAYHGTA 343
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+ +NIYVIGGFDG +Y+NSCRCF+AV K W E+APMN +RCYVS AV +IYAMGGY+
Sbjct: 344 VVDFNIYVIGGFDGMDYFNSCRCFDAVKKTWHEVAPMNARRCYVSVAVLGTIIYAMGGYD 403
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQN+ EKYNY NQWSLIA MNV+RSDASATTL KIYITGGFNG C+NS EVYDP
Sbjct: 404 GHHRQNTAEKYNYKYNQWSLIASMNVQRSDASATTLNNKIYITGGFNGQECMNSAEVYDP 463
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWT+I MR RRSGVSCI YH C+YVIGGFNG+SRMC+GEKYNPVT WS +PDMYN
Sbjct: 464 EVNQWTMITAMRSRRSGVSCITYHGCVYVIGGFNGISRMCSGEKYNPVTNAWSHIPDMYN 523
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNFAIEVIDDMIFAIGGFNGVTTI+HVECYDEKT+EWYEATDMNIYRSALSACVIMGL
Sbjct: 524 PRSNFAIEVIDDMIFAIGGFNGVTTIFHVECYDEKTNEWYEATDMNIYRSALSACVIMGL 583
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSN 796
PNVYDYIH+HR+ LMEEKRQKLLA+E QRQ+Q ++ + + +P + ++
Sbjct: 584 PNVYDYIHKHRERLMEEKRQKLLALEN-QRQHQVANTHAVENTNIPHNQAS 633
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090540|ref|XP_970878.1| PREDICTED: similar to CG12423 CG12423-PA [Tribolium castaneum] gi|270013882|gb|EFA10330.1| hypothetical protein TcasGA2_TC012547 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/511 (69%), Positives = 432/511 (84%), Gaps = 1/511 (0%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ RKL + ++NV +L+ D+ M A ++CC +++ + + +NC GILLF+R+HFC L
Sbjct: 90 YLRKLDLNKNNVFDVLITADYLSMLGALEMCCKYLENILSAKNCIGILLFARNHFCTDLA 149
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ ++I++NF+ +A++S+E++ ++ ++ +EII++D LNVKSEE VWE I++WIDYDPE
Sbjct: 150 QACWRFIMKNFIQIAQQSDELLMLALKDFQEIINADNLNVKSEEIVWETILKWIDYDPEQ 209
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK HIV+LMK IRLGLLET+FF EKVK HPYV S E RP++IET KFLYDLE I +G
Sbjct: 210 RKAHIVTLMKCIRLGLLETQFFMEKVKDHPYVTSCEESRPMVIETLKFLYDLERIMHKNG 269
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EV TPEIARPR+PHE+LFAIGGWSGGSPT+++ETYDTRADRWVKI++VDP GPRAYHGTA
Sbjct: 270 EVVTPEIARPRLPHEVLFAIGGWSGGSPTNYIETYDTRADRWVKIEEVDPAGPRAYHGTA 329
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+GYNIYVIGGFDG +Y+NSCRCF+ V K WKEIAPM+ +RCYVSTAV ++IYAMGGY+
Sbjct: 330 VVGYNIYVIGGFDGMDYFNSCRCFDPVKKAWKEIAPMHARRCYVSTAVLNNIIYAMGGYD 389
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQN+ EKY+Y NQWSLIA MN++RSDASA L KIYITGGFNG C++S EVYDP
Sbjct: 390 GHHRQNTAEKYDYKTNQWSLIASMNMQRSDASACNLNNKIYITGGFNGQECMHSAEVYDP 449
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
E NQWTLI MR RRSGVSCIAYH+ +YVIGGFNG+SRMC+GEKYNP + TW+ VPDMYN
Sbjct: 450 ELNQWTLISAMRSRRSGVSCIAYHDYVYVIGGFNGISRMCSGEKYNPQSNTWTPVPDMYN 509
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMNIYRSALSACV+ GL
Sbjct: 510 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNIYRSALSACVVDGL 569
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQ 776
PN+ DYIH+HRD LMEEKRQK++A+E QRQ
Sbjct: 570 PNIEDYIHKHRDKLMEEKRQKMIALES-QRQ 599
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307168569|gb|EFN61627.1| Kelch-like protein 10 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/509 (70%), Positives = 424/509 (83%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + + +NV LL D+ + DLCCD+++ P NC G++ F+R HFCKKLE
Sbjct: 109 YLRSIDVNRENVCELLTTADYLSILGVLDLCCDYLRDNLAPENCIGVMRFARQHFCKKLE 168
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
++I+ +FV+V++ SEEI+ + +EL+ ++ +DELNVKSE+TVWELI+RWI++D E+
Sbjct: 169 NDAYRFIVGHFVEVSQRSEEILHLPIEELKPLVGADELNVKSEQTVWELILRWINHDVES 228
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK +IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYDLE+I Q DG
Sbjct: 229 RKDYIVDLMKNIRLGLLDTQFFLENVKDHPYVVGNDACRPIIIETLKFLYDLEMITQKDG 288
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EVPTPEIARPRVPHEILFAIGGWSGGSPT+++ETYDTRADRW+ I++ DP PRAYHG A
Sbjct: 289 EVPTPEIARPRVPHEILFAIGGWSGGSPTNYIETYDTRADRWIPIEETDPTSPRAYHGLA 348
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
VIG+NIYVIGGFDG +Y+NSCRCFNAVTKVW+E+APMN +RCYVS AV D+IYAMGGY+
Sbjct: 349 VIGFNIYVIGGFDGVDYFNSCRCFNAVTKVWREVAPMNARRCYVSVAVLNDLIYAMGGYD 408
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQ + E+Y+Y NQWSLIAPMNV+RSDASATTL KIYITGGF+GH+CLN+ EVYDP
Sbjct: 409 GYHRQKTAERYDYKTNQWSLIAPMNVQRSDASATTLNDKIYITGGFDGHDCLNTAEVYDP 468
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
NQWT+I MR RRSGVSCI+YH +YVIGGFNG+SRMC+GEKY P T TWS +PDMYN
Sbjct: 469 NTNQWTMITAMRSRRSGVSCISYHGYVYVIGGFNGISRMCSGEKYKPSTNTWSHIPDMYN 528
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNFAIEVIDDMIFAIGGFNGVTT Y VECYDEKT+EWYEATDMNI RSALSACVIMGL
Sbjct: 529 PRSNFAIEVIDDMIFAIGGFNGVTTTYQVECYDEKTNEWYEATDMNICRSALSACVIMGL 588
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIEGRQ 774
PN+YDYIH+HR+ LMEEKRQKLLA E R+
Sbjct: 589 PNIYDYIHKHRERLMEEKRQKLLAHEVRR 617
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383859702|ref|XP_003705331.1| PREDICTED: kelch-like protein 10-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/600 (61%), Positives = 447/600 (74%), Gaps = 49/600 (8%)
Query: 243 RRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302
R + V T N + + + R + I +NV LL+ D+ + +LCC+++K+
Sbjct: 86 REKTDVLLPGVTSNMMNLLLEYAYLRSISINNENVYQLLVTADYLNVLGVLELCCEYLKQ 145
Query: 303 LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDV----------------------- 339
P NC ++ F+R+HFCK LE T +Y++R FV V
Sbjct: 146 NLAPENCISVMRFAREHFCKGLENSTYRYVMRYFVQVIILLPALNYPTDNYGFNILLIKP 205
Query: 340 -----------------------ARESEEIVFISEQELEEIISSDELNVKSEETVWELII 376
A+ S+EI+ + +EL +I +DELNVKSE+TVWEL++
Sbjct: 206 GINHSSQTFAVNRQCNKLYWTQVAQRSKEILELPIEELTALIGADELNVKSEDTVWELVL 265
Query: 377 RWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYD 436
+WID+DP+ RKK+IV LMKNIRLGLL+T+FF E VK HPYV CRPIIIET KFLYD
Sbjct: 266 KWIDHDPQARKKYIVDLMKNIRLGLLDTQFFLENVKDHPYVTGNDACRPIIIETLKFLYD 325
Query: 437 LELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM 496
LE+I Q DGE+PTP+IARPRVPHEILFAIGGWSG SPT+F+ETYDTRADRWVK+ VDP+
Sbjct: 326 LEIITQKDGEIPTPKIARPRVPHEILFAIGGWSGSSPTNFIETYDTRADRWVKV-YVDPI 384
Query: 497 GPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 556
GPRAYH TAV+G+NIYVIGGF+G++Y+NSCRCFNAVTKVW+EIAPMN +RCYVS AV D
Sbjct: 385 GPRAYHSTAVVGFNIYVIGGFNGSDYFNSCRCFNAVTKVWREIAPMNARRCYVSVAVLND 444
Query: 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNC 616
+IYAMGGY+G RQ++ E+YNY NQWSLIA MN +RSDASATTL KIY+TGGFNGH C
Sbjct: 445 LIYAMGGYDGYYRQSTAERYNYKTNQWSLIASMNCQRSDASATTLNDKIYVTGGFNGHEC 504
Query: 617 LNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676
LNS EVY+PE NQWT+I PMR RRSGVSCIAYH +YVIGGFNG+SRMC+GE+YNP T
Sbjct: 505 LNSAEVYNPETNQWTMIAPMRSRRSGVSCIAYHGHVYVIGGFNGISRMCSGERYNPTTNV 564
Query: 677 WSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSA 736
W+ +PDMYN RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT+EWYEATDMN+YRSA
Sbjct: 565 WTPIPDMYNSRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTNEWYEATDMNVYRSA 624
Query: 737 LSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIE--GRQRQNQSEEGNSSQQSVLPSSN 794
LSACVIMGLPNV DYIH+HR+ LMEEKRQKLLA+E Q Q Q ++ + +++++L N
Sbjct: 625 LSACVIMGLPNVNDYIHKHRERLMEEKRQKLLALEVHRSQHQRQQDQAHQNRENILNHEN 684
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357618938|gb|EHJ71722.1| putative Kelch-like protein 10 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/532 (66%), Positives = 422/532 (79%), Gaps = 6/532 (1%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R++ +T+ NV LL+ D+ LC D +K P+NC GI++F+R FC KLE
Sbjct: 96 YLRRIEVTDTNVHELLMTADYLAFLGVLQLCSDHLKAALNPKNCLGIMMFARRVFCYKLE 155
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+R+Y+LR FV VA +S+E + + EL II DELNVKSEE VWE ++RW++YDP+
Sbjct: 156 ADSRRYLLRYFVTVATQSDEFLHLPIDELNSIILEDELNVKSEEVVWEAVLRWVNYDPDV 215
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
R H V LM +IRLGLL+T+FF E VK HPYV RPIIIET KFLYDLE+IAQ DG
Sbjct: 216 RWHHTVKLMGSIRLGLLDTQFFLENVKDHPYVTGNEGSRPIIIETLKFLYDLEMIAQRDG 275
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
EV TPEIARPRVPHE+LFAIGGWSGGSPT F+ETYDTRADRW+K+++VDP GPRAYHGTA
Sbjct: 276 EVATPEIARPRVPHEVLFAIGGWSGGSPTAFIETYDTRADRWIKVEEVDPAGPRAYHGTA 335
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
V+GY IYVIGGFDG +Y+NSCRCF+AV KVW+E+APMN +RCYVS AV + IYAMGGY+
Sbjct: 336 VLGYCIYVIGGFDGMDYFNSCRCFDAVAKVWREVAPMNARRCYVSVAVLGETIYAMGGYD 395
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQN+ E++N+ NQWSL+APMN +RSDASA L KIYITGGFNG C+NS EVYDP
Sbjct: 396 GHHRQNTAERFNHRTNQWSLVAPMNAQRSDASAAALDNKIYITGGFNGQECMNSVEVYDP 455
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
+ NQWT + PMR RRSGVSCIAYH IYVIGGFNG+SRMC+GE ++P T TWS VPDMYN
Sbjct: 456 DTNQWTNLAPMRSRRSGVSCIAYHNKIYVIGGFNGISRMCSGEVFDPNTNTWSPVPDMYN 515
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDE+T+EWYEATDMNIYRSALSACVIMGL
Sbjct: 516 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDERTNEWYEATDMNIYRSALSACVIMGL 575
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIE-GRQRQNQSE-----EGNSSQQSVLP 791
PNVYDYIH+HR+ LMEEKRQK+L E R Q+++ G+S Q +P
Sbjct: 576 PNVYDYIHKHRERLMEEKRQKILLSETARHGQHRTALPDGPRGDSRYQHNVP 627
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345485137|ref|XP_001605004.2| PREDICTED: kelch-like protein 10-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/534 (57%), Positives = 381/534 (71%), Gaps = 51/534 (9%)
Query: 266 FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 325
+ R + I +++V LL+ D+ + +LCCDF++R T +NC GI++F+R+HFCK LE
Sbjct: 137 YLRTIDIKQEDVCELLITADYLVIDGVLELCCDFLRRSLTVKNCIGIMIFAREHFCKDLE 196
Query: 326 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPEN 385
+ R+Y+LR FV PE
Sbjct: 197 KEARRYLLRYFVQ--------------------------------------------PET 212
Query: 386 RKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDG 445
RK HIV LM+NIRLGL++T +F E VK+H YV CRPI+IET KFLYD E+I Q DG
Sbjct: 213 RKVHIVELMRNIRLGLMDTYYFLENVKNHHYVAGNEACRPIVIETLKFLYDPEMIKQKDG 272
Query: 446 EVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA 505
E+ EIA PRVPH+ILFAIGGW G S D +ETYDTRADRWVK++Q+DP+GPR YHG A
Sbjct: 273 EL---EIATPRVPHDILFAIGGWQGVSAVDLIETYDTRADRWVKVEQIDPLGPRGYHGMA 329
Query: 506 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565
VIGY IYVIGG +G E++NSCRCFN V K W+E+APMN KR YVS A+ D+IYAMGGY+
Sbjct: 330 VIGYKIYVIGGLNGVEFFNSCRCFNPVRKTWREVAPMNAKRAYVSVALLNDIIYAMGGYD 389
Query: 566 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625
G RQNS E+Y+Y NQWSLIAPM+++RSDASAT L GKIYITGGFNG C++S EVYDP
Sbjct: 390 GYFRQNSAERYDYRRNQWSLIAPMHMQRSDASATALNGKIYITGGFNGRECMSSAEVYDP 449
Query: 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
+ NQWT+I MR RRSGVSCIAYH +Y +GGFNG+SRMC GEKYNP T TW+ +PDMYN
Sbjct: 450 DTNQWTMIAHMRLRRSGVSCIAYHGLVYALGGFNGVSRMCCGEKYNPETNTWTAIPDMYN 509
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
RSNFAIE+IDDMIFAIGGFNG +T +HVEC+ + T+EWYEATDMN YRS L+ACV+ L
Sbjct: 510 SRSNFAIEIIDDMIFAIGGFNGFSTTFHVECFSDSTNEWYEATDMNTYRSGLAACVVKVL 569
Query: 746 PNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSNVSS 799
PNV+DY H+HR+ LMEEKRQKLL IE QR + + QQ+ + +S S +S
Sbjct: 570 PNVHDYTHKHRERLMEEKRQKLLDIEALQRAGSAPQ----QQNHVATSRSTHNS 619
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| FB|FBgn0040038 | 767 | klhl10 [Drosophila melanogaste | 0.609 | 0.654 | 0.539 | 1.4e-151 | |
| UNIPROTKB|F1MBZ1 | 608 | KLHL10 "Uncharacterized protei | 0.675 | 0.916 | 0.451 | 2.5e-136 | |
| MGI|MGI:2181067 | 608 | Klhl10 "kelch-like 10" [Mus mu | 0.675 | 0.916 | 0.451 | 2.5e-136 | |
| RGD|1303290 | 608 | Klhl10 "kelch-like family memb | 0.675 | 0.916 | 0.451 | 2.5e-136 | |
| UNIPROTKB|Q6JEL2 | 608 | KLHL10 "Kelch-like protein 10" | 0.675 | 0.916 | 0.451 | 3.2e-136 | |
| UNIPROTKB|F1Q2G6 | 608 | KLHL10 "Uncharacterized protei | 0.675 | 0.916 | 0.449 | 1.8e-135 | |
| UNIPROTKB|F1NTA7 | 591 | KLHL10 "Uncharacterized protei | 0.611 | 0.852 | 0.489 | 7.9e-133 | |
| UNIPROTKB|B4LIG6 | 624 | dbo "Kelch-like protein diablo | 0.621 | 0.820 | 0.322 | 1e-75 | |
| UNIPROTKB|B4J045 | 624 | dbo "Kelch-like protein diablo | 0.608 | 0.802 | 0.327 | 1.3e-75 | |
| UNIPROTKB|B4L0G9 | 617 | dbo "Kelch-like protein diablo | 0.608 | 0.811 | 0.327 | 1.7e-75 |
| FB|FBgn0040038 klhl10 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
Identities = 271/502 (53%), Positives = 353/502 (70%)
Query: 268 RKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEW 327
R+ +I+E NV LL+ D+ M C D++ R+ TP NC I+ F+R F + L
Sbjct: 154 RQTNISESNVHELLICADYVGMVGLVKKCKDYLGRILTPENCVSIMGFARFRFLEDLHLK 213
Query: 328 TRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVWELIIRWIDYDPENRK 387
R Y LR F +VA + +I+ LN + E+ VW+L ++WID +PE+RK
Sbjct: 214 ARNYTLRYFTEVAYRNIDILDMSAEDFYSIISDDELNTREEDHVWKLCVKWIDRNPESRK 273
Query: 388 KHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEV 447
+H+ LM +RLGL+ + F E+VK HPYV +P+I++TFKF+YDL+ + E+
Sbjct: 274 RHVAHLMTGVRLGLMTPKCFMEEVKEHPYVLECEAAKPLIVDTFKFMYDLDFLNPQADEL 333
Query: 448 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI 507
TP +A PR+PHE++FAIGGWSGG+ +ETYDTRADRWV I+ DP GPRAYHGTAV+
Sbjct: 334 TTPPLAMPRLPHEVIFAIGGWSGGTSKGCIETYDTRADRWVTINAEDPAGPRAYHGTAVL 393
Query: 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ 567
G+ I+ IGG+DG EY+N+CR F+AV K W EIAPM+ +RCYVS +IYA+GGY+G
Sbjct: 394 GFKIFSIGGYDGVEYFNTCRVFDAVKKKWNEIAPMHCRRCYVSVTELNGMIYAIGGYDGH 453
Query: 568 RRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC 627
R N+VE+YN NQWS+I PMN++RSDASA TLQ +IY TGGFNG CL+S E YDP
Sbjct: 454 NRLNTVERYNPRTNQWSVIPPMNMQRSDASACTLQERIYATGGFNGQECLDSAEYYDPVT 513
Query: 628 NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687
N WT I M HRRSGVSC+A+ +YVIGGFNG +R+ GE+++P T+TW + +M + R
Sbjct: 514 NVWTRIPNMNHRRSGVSCVAFRNQLYVIGGFNGTARLSTGERFDPDTQTWHFIREMNHSR 573
Query: 688 SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPN 747
SNF +E+IDDMIFAIGGFNGV+TI H ECY +TDEW EATDMNI RSALSA I GLPN
Sbjct: 574 SNFGLEIIDDMIFAIGGFNGVSTISHTECYVAETDEWMEATDMNIVRSALSANNIAGLPN 633
Query: 748 VYDYIHQHRDSLMEEKRQKLLA 769
DYIH+ RD LMEE+RQ+L+A
Sbjct: 634 KRDYIHKERDRLMEERRQRLMA 655
|
|
| UNIPROTKB|F1MBZ1 KLHL10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 256/567 (45%), Positives = 361/567 (63%)
Query: 196 EYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 252
E +N R + V ++ F K S + + ++ G N +++ ++
Sbjct: 27 EIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIP--G 84
Query: 253 YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312
+ + K+ + + R + IT DNV LL A D F + CC+F+K NC GI
Sbjct: 85 ISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGI 144
Query: 313 LLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVW 372
F+ ++C +L + +IL NF ++ + S E + LNVK E+ V+
Sbjct: 145 CKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVF 204
Query: 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432
E I++WI +DP+NRK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K
Sbjct: 205 EAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALK 264
Query: 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+YDL + + + P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV +
Sbjct: 265 AMYDLNMNGPSNSDFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVT- 322
Query: 493 VDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVST 551
+ PRAYHG A + GY +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS
Sbjct: 323 CEEESPRAYHGAAYLKGY-VYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSV 381
Query: 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611
V + IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGF
Sbjct: 382 TVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGF 441
Query: 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
NG+ CL + EVY+ E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+
Sbjct: 442 NGNECLFTAEVYNAESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYS 501
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PV TW +P M+NPRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+
Sbjct: 502 PVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMS 561
Query: 732 IYRSALSACVIMGLPNVYDYIHQHRDS 758
IYRSALS CV+ GL NV +Y + RD+
Sbjct: 562 IYRSALSCCVVPGLANVGEYAAR-RDN 587
|
|
| MGI|MGI:2181067 Klhl10 "kelch-like 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 256/567 (45%), Positives = 361/567 (63%)
Query: 196 EYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 252
E +N R + V ++ F K S + + ++ G N +++ ++
Sbjct: 27 EIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIP--G 84
Query: 253 YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312
+ + K+ + + R + IT DNV LL A D F + CC+F+K NC GI
Sbjct: 85 ISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGI 144
Query: 313 LLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVW 372
F+ ++C +L + +IL NF ++ + S E + LNVK E+ V+
Sbjct: 145 CKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVF 204
Query: 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432
E I++WI +DP+NRK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K
Sbjct: 205 EAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALK 264
Query: 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+YDL + + + P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV +
Sbjct: 265 AMYDLNMNGPSNSDFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVT- 322
Query: 493 VDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVST 551
+ PRAYHG A + GY +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS
Sbjct: 323 CEEESPRAYHGAAYLKGY-VYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSV 381
Query: 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611
V + IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGF
Sbjct: 382 TVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGF 441
Query: 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
NG+ CL + EVY+ E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+
Sbjct: 442 NGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYS 501
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PV TW +P M+NPRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+
Sbjct: 502 PVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMS 561
Query: 732 IYRSALSACVIMGLPNVYDYIHQHRDS 758
IYRSALS CV+ GL NV +Y + RD+
Sbjct: 562 IYRSALSCCVVPGLANVGEYAAR-RDN 587
|
|
| RGD|1303290 Klhl10 "kelch-like family member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 256/567 (45%), Positives = 361/567 (63%)
Query: 196 EYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 252
E +N R + V ++ F K S + + ++ G N +++ ++
Sbjct: 27 EIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIP--G 84
Query: 253 YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312
+ + K+ + + R + IT DNV LL A D F + CC+F+K NC GI
Sbjct: 85 ISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGI 144
Query: 313 LLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVW 372
F+ ++C +L + +IL NF ++ + S E + LNVK E+ V+
Sbjct: 145 CKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVF 204
Query: 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432
E I++WI +DP+NRK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K
Sbjct: 205 EAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALK 264
Query: 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+YDL + + + P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV +
Sbjct: 265 AMYDLNMNGPSNSDFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVT- 322
Query: 493 VDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVST 551
+ PRAYHG A + GY +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS
Sbjct: 323 CEEESPRAYHGAAYLKGY-VYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSV 381
Query: 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611
V + IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGF
Sbjct: 382 TVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGF 441
Query: 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
NG+ CL + EVY+ E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+
Sbjct: 442 NGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYS 501
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PV TW +P M+NPRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+
Sbjct: 502 PVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMS 561
Query: 732 IYRSALSACVIMGLPNVYDYIHQHRDS 758
IYRSALS CV+ GL NV +Y + RD+
Sbjct: 562 IYRSALSCCVVPGLANVGEYAAR-RDN 587
|
|
| UNIPROTKB|Q6JEL2 KLHL10 "Kelch-like protein 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
Identities = 256/567 (45%), Positives = 361/567 (63%)
Query: 196 EYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 252
E +N R + V ++ F K S + + ++ G N +++ ++
Sbjct: 27 EIFNELRLEGKLCDVVIKVNGFEFSAHKNILCSCSSYFRALFTSGWNNTEKKVYNIP--G 84
Query: 253 YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312
+ + K+ + + R + IT DNV LL A D F + CC+F+K NC GI
Sbjct: 85 ISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGI 144
Query: 313 LLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVW 372
F+ ++C +L + +IL NF ++ + S E + LNVK E+ V+
Sbjct: 145 CKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVF 204
Query: 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432
E I++WI +DP+NRK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K
Sbjct: 205 EAILKWISHDPQNRKQHISILLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALK 264
Query: 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+YDL + + + P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV +
Sbjct: 265 AMYDLNMNGPSNSDFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVT- 322
Query: 493 VDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVST 551
+ PRAYHG A + GY +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS
Sbjct: 323 CEEESPRAYHGAAYLKGY-VYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSV 381
Query: 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611
V + IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGF
Sbjct: 382 TVLGNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGF 441
Query: 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
NG+ CL + EVY+ E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+
Sbjct: 442 NGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYS 501
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PV TW +P M+NPRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+
Sbjct: 502 PVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMS 561
Query: 732 IYRSALSACVIMGLPNVYDYIHQHRDS 758
IYRSALS CV+ GL NV +Y + RD+
Sbjct: 562 IYRSALSCCVVPGLANVEEYAAR-RDN 587
|
|
| UNIPROTKB|F1Q2G6 KLHL10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 255/567 (44%), Positives = 360/567 (63%)
Query: 196 EYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 252
E +N R + V ++ F K S + + ++ G N +++ ++
Sbjct: 27 EIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIP--G 84
Query: 253 YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312
+ + K+ + + R + IT DNV LL A D F + CC+F+K NC GI
Sbjct: 85 ISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGI 144
Query: 313 LLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSEETVW 372
F+ ++C +L + +IL NF ++ + S E + LNVK E+ V+
Sbjct: 145 CKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVF 204
Query: 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432
E I++WI +D +NRK+HI L+ +RL L+ E+F VK + YV+ + EC+P+II K
Sbjct: 205 EAILKWISHDSQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALK 264
Query: 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+YDL + + + P + RPR+P+ ILFAIGGWSGGSPT+ +E YD RADRWV +
Sbjct: 265 AMYDLNMNGPSNSDFTNP-LTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVT- 322
Query: 493 VDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVST 551
+ PRAYHG A + GY +Y+IGGFD +Y+NS + F+ V K W ++APM+ +RCYVS
Sbjct: 323 CEEESPRAYHGAAYLKGY-VYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSV 381
Query: 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611
V + IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDASATTL GK+YI GGF
Sbjct: 382 TVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGF 441
Query: 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
NG+ CL + EVY+ E NQWT+I PMR RRSG+ IAY E +Y +GGF+G +R+ + E Y+
Sbjct: 442 NGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYS 501
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PV TW +P M+NPRSNF IEV+DD++F +GGFNG TT ++VECYDEKTDEWY+A DM+
Sbjct: 502 PVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMS 561
Query: 732 IYRSALSACVIMGLPNVYDYIHQHRDS 758
IYRSALS CV+ GL NV +Y + RD+
Sbjct: 562 IYRSALSCCVVPGLANVGEYAAR-RDN 587
|
|
| UNIPROTKB|F1NTA7 KLHL10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
Identities = 250/511 (48%), Positives = 330/511 (64%)
Query: 246 NSVEKYNYTENQDKIEEKKL-----FERKLHITEDNVASLLLATDFFCMSKAQDLCCDFI 300
N++EK Y E KL + R + IT DNV SLL D F + LCC+F+
Sbjct: 78 NNMEKVVYKIPGISPEMMKLVIEYAYTRTVSITADNVESLLGTADQFNIMGIIRLCCEFL 137
Query: 301 KRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXX 360
K NC GI + + C L + +IL NF ++ + S E +
Sbjct: 138 KSQLCLENCIGICRLTNYYHCPGLRQTAYMFILHNFEELIKVSTEFLDLSIHELTDIIEK 197
Query: 361 XXLNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQST 420
LNVK EE V++ I++WI +DP +RK+HI L+ +RL L+E + F KVK H YV+
Sbjct: 198 DELNVKQEEVVFDAILKWITHDPWHRKQHIPILLSKVRLALMEADHFMNKVKTHDYVKDN 257
Query: 421 PECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY 480
EC+PIII T +Y+L + + P +ARPR+P+ ILFAIGGWSGGSPT+ +ETY
Sbjct: 258 NECKPIIINTLTAMYNLNTNNPVLSDRINP-LARPRLPYSILFAIGGWSGGSPTNAIETY 316
Query: 481 DTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 540
DTRAD+WV + + PRAYHGTA + +YVIGGFD +Y+NS + F+ V K W ++A
Sbjct: 317 DTRADKWVNVTCHEE-SPRAYHGTAFLKGFVYVIGGFDSVDYFNSVKRFDPVKKTWHQVA 375
Query: 541 PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT 600
PM+ +RCYVS V D IYAMGG++G R N+ E+Y NQW+LIAPM+ +RSDA ATT
Sbjct: 376 PMHSRRCYVSVTVLNDFIYAMGGFDGYTRLNTAERYEPQTNQWTLIAPMHEQRSDAGATT 435
Query: 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNG 660
L K+YI GGFNG+ CL++ EVYD +QWT I PMR RRSGV IAY +Y +GGF+G
Sbjct: 436 LHDKVYICGGFNGNECLSTAEVYDAGTDQWTFISPMRSRRSGVGVIAYGNQVYAVGGFDG 495
Query: 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720
++R+ E YNP TW VP M+NPRSNF IEV+DD++F +GGFNG T ++VECYDEK
Sbjct: 496 VNRLRTVEAYNPAANTWRVVPTMFNPRSNFGIEVVDDLLFVVGGFNGYATTFNVECYDEK 555
Query: 721 TDEWYEATDMNIYRSALSACVIMGLPNVYDY 751
DEW++A DM++YRSALS CV+ GL NV DY
Sbjct: 556 ADEWFDAQDMSVYRSALSCCVVPGLCNVGDY 586
|
|
| UNIPROTKB|B4LIG6 dbo "Kelch-like protein diablo" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 170/527 (32%), Positives = 265/527 (50%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 108 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 167
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXX 361
R P NC GI F+ H C++L K+ NF +V ESEE +
Sbjct: 168 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 226
Query: 362 XLNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
LNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 227 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 286
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPH---EILFAIGGWSGGSPTDFVE 478
CR ++ E +L L+ Q + P RPR P E+LFA+GGW G VE
Sbjct: 287 ACRDLVDEAKNYL----LLPQERPLMQGPR-TRPRKPTRRGEVLFAVGGWCSGDAIASVE 341
Query: 479 TYDTRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537
+D + + W V PM R G AV+ +Y +GG DG Y NS ++ T W
Sbjct: 342 RFDPQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 398
Query: 538 -EIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA 596
++AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R
Sbjct: 399 CDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGV 458
Query: 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIG 656
+ L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +G
Sbjct: 459 AVAVLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518
Query: 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVEC 716
G + + + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E
Sbjct: 519 GRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEV 578
Query: 717 YDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLMEEK 763
YD +T++W MN YR +M P +Y+ L+ ++
Sbjct: 579 YDPETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYMWCDNSFLLHDR 624
|
|
| UNIPROTKB|B4J045 dbo "Kelch-like protein diablo" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 169/516 (32%), Positives = 262/516 (50%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 108 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 167
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXX 361
R P NC GI F+ H C++L K+ NF +V ESEE +
Sbjct: 168 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 226
Query: 362 XLNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
LNV+SEE V+ ++ W+ Y+ +R++H+ +++++RL LL +F V V+S
Sbjct: 227 ELNVRSEEQVFNAVMSWLKYNVADRRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 286
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPH---EILFAIGGWSGGSPTDFVE 478
CR ++ E +L L+ Q + P RPR P E+LFA+GGW G VE
Sbjct: 287 ACRDLVDEAKNYL----LLPQERPLMQGPR-TRPRKPTRRGEVLFAVGGWCSGDAIASVE 341
Query: 479 TYDTRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537
+D + + W V PM R G AV+ +Y +GG DG Y NS ++ T W
Sbjct: 342 RFDPQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 398
Query: 538 -EIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA 596
++AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R
Sbjct: 399 CDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGV 458
Query: 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIG 656
+ L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +G
Sbjct: 459 AVAVLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518
Query: 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVEC 716
G + + + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E
Sbjct: 519 GRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEV 578
Query: 717 YDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
YD +T++W MN YR +M P +Y+
Sbjct: 579 YDPETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 613
|
|
| UNIPROTKB|B4L0G9 dbo "Kelch-like protein diablo" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 169/516 (32%), Positives = 261/516 (50%)
Query: 242 QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ RQ V + EN ++ + + + E NV +LL A + + QD+CC+F+K
Sbjct: 108 ESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLK 167
Query: 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXX 361
R P NC GI F+ H C++L K+ NF +V ESEE +
Sbjct: 168 RQLDPTNCLGIRAFADTHSCRELLRIADKFTQHNFQEVM-ESEEFLLLPVGQLVDIICSD 226
Query: 362 XLNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421
LNV+SEE V+ ++ W+ Y+ R++H+ +++++RL LL +F V V+S
Sbjct: 227 ELNVRSEEQVFNAVMSWLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDE 286
Query: 422 ECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPH---EILFAIGGWSGGSPTDFVE 478
CR ++ E +L L+ Q + P RPR P E+LFA+GGW G VE
Sbjct: 287 ACRDLVDEAKNYL----LLPQERPLMQGPR-TRPRKPTRRGEVLFAVGGWCSGDAIASVE 341
Query: 479 TYDTRADRWVKIDQVDPMGPRAYH-GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537
+D + + W V PM R G AV+ +Y +GG DG Y NS ++ T W
Sbjct: 342 RFDPQTNDW---KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWS 398
Query: 538 -EIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA 596
++AP R V AV +YA+GG +G + N VE+Y+ EN+WS +APM R
Sbjct: 399 CDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGV 458
Query: 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIG 656
+ L G +Y GG +G LN+ E YDP N+W + PM RR + C ++ IY +G
Sbjct: 459 AVAVLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518
Query: 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVEC 716
G + + + E+YNP+T TWS + M + RS + V++ ++A+GGF+G + +E
Sbjct: 519 GRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLYAVGGFDGSAYLKTIEV 578
Query: 717 YDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
YD +T++W MN YR +M P +Y+
Sbjct: 579 YDPETNQWRLCGCMN-YRRLGGGVGVMRAPQTENYM 613
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9D5V2 | KLH10_MOUSE | No assigned EC number | 0.5123 | 0.5873 | 0.7960 | yes | N/A |
| Q2M0J9 | KLHDB_DROPS | No assigned EC number | 0.3313 | 0.6116 | 0.8025 | yes | N/A |
| Q6JEL2 | KLH10_HUMAN | No assigned EC number | 0.5123 | 0.5873 | 0.7960 | yes | N/A |
| Q6JEL3 | KLH10_RAT | No assigned EC number | 0.5123 | 0.5873 | 0.7960 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 824 | |||
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-64 | |
| pfam07707 | 101 | pfam07707, BACK, BTB And C-terminal Kelch | 2e-33 | |
| smart00875 | 101 | smart00875, BACK, BTB And C-terminal Kelch | 1e-30 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 5e-27 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 9e-25 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 8e-22 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 8e-22 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-19 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-16 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 9e-15 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 7e-14 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-12 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-12 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 8e-12 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 9e-12 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-11 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-11 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 2e-11 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 5e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 5e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 5e-11 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-10 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-10 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-10 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 3e-10 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 3e-10 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 1e-09 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 6e-09 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 8e-09 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 9e-09 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 2e-08 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 7e-08 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 8e-08 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-07 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-07 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-07 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-07 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-07 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 9e-07 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-06 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 5e-06 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-05 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 3e-05 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 4e-05 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 4e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 4e-05 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 9e-05 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 9e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 1e-04 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 3e-04 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 4e-04 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 4e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 4e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 5e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 7e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 7e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 0.001 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 0.001 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 0.001 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 0.001 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.001 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.002 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.002 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.002 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 0.002 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 0.003 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 0.004 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 3e-64
Identities = 117/469 (24%), Positives = 203/469 (43%), Gaps = 32/469 (6%)
Query: 268 RKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEW 327
K++IT +NV +L ++ + +LC ++I ++ NC I FS + CKKL
Sbjct: 69 GKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSA 128
Query: 328 TRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRK 387
YI N + + +++S+ EL +I+S D+LNV SE+ V E+II+W+ N+
Sbjct: 129 AYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKY 187
Query: 388 KHIVSLMKNIRLGLLETEFF------REKVKHHPYVQSTPECRPIIIETFKFLYDLELIA 441
K I ++K +R+ L E + ++K V + C II L
Sbjct: 188 KDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNK-RCIKIIYSKKYNL------- 239
Query: 442 QIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAY 501
+ +P + I +++ Y +I+ + +
Sbjct: 240 --NKILPRSS------TFGSIIYIHITMSIFTYNYITNYS----PLSEINTIIDIHYVYC 287
Query: 502 HGTAVIGYNIYVIGGFDGNEY-YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 560
G+ V+ IY IGG + N NS ++ TK W ++ + + R V + IY
Sbjct: 288 FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYV 347
Query: 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG-FNGHNCLNS 619
+GG N+VE + E++W P+ R + + IY+ GG L +
Sbjct: 348 IGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKT 407
Query: 620 CEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGF---NGMSRMCNGEKYNPVTKT 676
E + N+W+ P+ G I + IYVIGG + + E YNPVT
Sbjct: 408 VECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467
Query: 677 WSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725
W+++ + PR N ++ + ++ I+ +GG I +E YD+KT+ W
Sbjct: 468 WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516
|
Length = 534 |
| >gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 45/101 (44%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSE 368
C GI F+ + C++L E ++IL+NF++V+ +SEE + +S+++L E++SSDELNV SE
Sbjct: 1 CLGIYRFADTYGCEELAEVALRFILKNFLEVS-KSEEFLELSKEQLLELLSSDELNVPSE 59
Query: 369 ETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFRE 409
E V+E +I+W+ +D ENRKKH+ L+ +RL LL E+ +
Sbjct: 60 EEVFEAVIKWVKHDVENRKKHLPELLSAVRLPLLSPEYLLD 100
|
This domain is found associated with pfam00651 and pfam01344. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. This family appears to be closely related to the BTB domain (Finn RD, personal observation). Length = 101 |
| >gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVF--ISEQELEEIISSDELNVK 366
C GI F+ H ++L E ++IL+NF +V+ E F + ++L E++SSD+LNV
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEE---FLELPLEQLLELLSSDDLNVS 57
Query: 367 SEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREK 410
SEE V+E ++RW+ +DPE R++H+ L++++RL LL ++ E
Sbjct: 58 SEEEVFEAVLRWVKHDPEKRREHLPELLEHVRLPLLSPDYLLEV 101
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. Length = 101 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 5e-27
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 6/225 (2%)
Query: 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTEN 581
+ + I +++ C+ S V +VIY +GG N NSV Y+
Sbjct: 263 TYNYITNYSPLSEINTIIDIHYVYCFGS-VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK 321
Query: 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS 641
W+ + + R + T +IY+ GG LN+ E + P ++W P+ R
Sbjct: 322 SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY 381
Query: 642 GVSCIAYHECIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIF 700
+ + IYVIGG + E ++ T WS+ + D I+
Sbjct: 382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIY 441
Query: 701 AIGGF---NGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742
IGG + + VE Y+ T++W E + +N R S C+
Sbjct: 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF 486
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-25
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 15/254 (5%)
Query: 10 DHGKIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSG-GSPTDFVETYDT 68
L I I V + +++ IGG + + V +YDT
Sbjct: 260 SIFTYNYITNYSPLSEINTIIDI-HYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT 318
Query: 69 RADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM 128
+ W K+ ++ PR G V IYVIGG + N+ + W+E P+
Sbjct: 319 KTKSWNKVPELIY--PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376
Query: 129 NFKRCYVSTAVHQDVIYAMGG-YNGQRRQNSVEKYNYTENQWSLIAPMN------CMIQN 181
F R ++IY +GG +VE ++ N+WS +P+ C I +
Sbjct: 377 IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH 436
Query: 182 VTYNIYVIGGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
IYVIGG D + YN +N VT W E++ +NF R S + + IY +GG
Sbjct: 437 DGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495
Query: 239 YNGQRRQNSVEKYN 252
+ N +E Y+
Sbjct: 496 DKYEYYINEIEVYD 509
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 8e-22
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 446 EVPTPEIARPR------VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPR 499
PE+ PR V + ++ IGG + VE++ +W ++ + PR
Sbjct: 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIFPR 380
Query: 500 AYHGTAVIGYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVI 558
+ IYVIGG +E + CF+ T W + +P+ H I
Sbjct: 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKI 440
Query: 559 YAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 615
Y +GG + + N VE YN N+W+ ++ +N R +AS KIY+ GG
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEY 500
Query: 616 CLNSCEVYDPECNQWTL 632
+N EVYD + N WTL
Sbjct: 501 YINEIEVYDDKTNTWTL 517
|
Length = 534 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 8e-22
Identities = 106/491 (21%), Positives = 198/491 (40%), Gaps = 84/491 (17%)
Query: 250 KYNYTENQDKIEEKKL--------------FERKLHITEDNVASLLLATDFFCMSKAQDL 295
+ YT+N+D + L + K++I NV +LL A+ +
Sbjct: 52 RQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYT 111
Query: 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELE 355
C +FI R C + ++ L T+ +I ++F+++ E + I ++
Sbjct: 112 CINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLEL--EDDIIDNFDYLSMK 169
Query: 356 EIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHP 415
I+ SDELNV E+ V + +I+W NR +++ L+KN+ + + +
Sbjct: 170 LILESDELNVPDEDYVVDFVIKWY-MKRRNRLGNLLLLIKNV----IRSNYLS------- 217
Query: 416 YVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTD 475
P I K++ D I D +PR ++
Sbjct: 218 ---------PRGINNVKWILDCTKIFHCD--------KQPRKSYKY-------------P 247
Query: 476 FVETYDTRADRWVKIDQVDPMGPRAYH--GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT 533
F+E Y D+ + I +H + +G +Y+IGG+ NE +N+ N ++
Sbjct: 248 FIE-YPMNMDQIIDI----------FHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYIS 296
Query: 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVER 593
W I PMN R Y S + +Y +GG SVE++ + + W + + R
Sbjct: 297 NNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPR 353
Query: 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIY 653
+ + ++ IY+ GG + + + E P +QW + + + ++
Sbjct: 354 CNPAVASINNVIYVIGGHSETD--TTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLF 411
Query: 654 VIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYH 713
++G N E Y + TW+ + D PR N + ++D+ + IGGF + I
Sbjct: 412 LVGR--------NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDT 463
Query: 714 VECYDEKTDEW 724
+E Y+ +T W
Sbjct: 464 IEVYNNRTYSW 474
|
Length = 480 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-19
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 66 YDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY-YNSCRCFNAVTKVWKE 124
Y T +I+ + + G+ V+ IY IGG + N NS ++ TK W +
Sbjct: 266 YITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK 325
Query: 125 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-----NCMI 179
+ + + R V + IY +GG N+VE + E++W P+ N +
Sbjct: 326 VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV 385
Query: 180 QNVTYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
NV IYVIGG +E + CF+ T W + +P+ H IY +GG
Sbjct: 386 VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGG 445
Query: 239 Y---NGQRRQNSVEKYNYTENQ 257
+ + N VE YN N+
Sbjct: 446 ISYIDNIKVYNIVESYNPVTNK 467
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-16
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 32 EVPTPEIARPR------VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPR 85
PE+ PR V + ++ IGG + VE++ +W ++ + PR
Sbjct: 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIFPR 380
Query: 86 AYHGTAVIGYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVI 144
+ IYVIGG +E + CF+ T W + +P+ H I
Sbjct: 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKI 440
Query: 145 YAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFD 193
Y +GG + + N VE YN N+W+ ++ +N C+ N IYV+GG
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNK---IYVVGGDK 497
Query: 194 GNEYYNSCRCFNAVTKVWK 212
Y N ++ T W
Sbjct: 498 YEYYINEIEVYDDKTNTWT 516
|
Length = 534 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-15
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 697
IYV+GGF+G R+ + E Y+P T W+ +P M PRS + VI+
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 7e-14
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGG 563
IG +YV GG D + YN F+ T WK + P+ R + S A ++ +Y GG
Sbjct: 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
Query: 564 YNGQRRQNSVEKYNYTENQW---SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSC 620
+ R +++ YN + +W S R A +QGK+++ GFNG C
Sbjct: 287 VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG------C 340
Query: 621 EV-----YDPECNQWTLIEPMRHR---RSGVSCIAYHECIYVIGG 657
EV YDP ++WT +E R RS + A + I + GG
Sbjct: 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385
|
Length = 470 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 46 EILFAIGGWS-GGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGF 103
+++ IGG S VE + ++W K P+ IYVIGG
Sbjct: 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGI 446
Query: 104 ---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVE 160
D + YN +N VT W E++ +NF R S + + IY +GG + N +E
Sbjct: 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIE 506
Query: 161 KYNYTENQWSLIAPMNCMIQNVTYNIY 187
Y+ N W+L +I ++ NI+
Sbjct: 507 VYDDKTNTWTLFCKFPKVIGSLEKNIF 533
|
Length = 534 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-12
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 593 RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR 637
RS A L GKIY+ GG++G L+S EVYDPE N W+ + M
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 8e-12
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 63/253 (24%)
Query: 486 RWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 542
+W+K++Q + G R HG A +G IY GG F N+ + F+ T+ W I+P
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW-SISPA 210
Query: 543 N--------FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERS 594
VS +Y GG + R+ N ++ T N+W L+ P
Sbjct: 211 TGDVPHLSCLGVRMVSIG---STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP------ 261
Query: 595 DASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYV 654
+E RS S A E +YV
Sbjct: 262 --------------------------------------VEEGPTPRSFHSMAADEENVYV 283
Query: 655 IGGFNGMSRMCNGEKYNPVTKTW---SQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTI 711
GG + +R+ + YN V K W S D ++ R +EV+ ++ + GFNG +
Sbjct: 284 FGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EV 342
Query: 712 YHVECYDEKTDEW 724
V YD D+W
Sbjct: 343 DDVHYYDPVQDKW 355
|
Length = 470 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-12
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650
KIY+ GGF+G L S EVYDPE N+WT + M RSG +
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 131 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 176
R V IY +GGY+G + +SVE Y+ N WS + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 545 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 590
R V IY +GGY+G + +SVE Y+ N WS + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 683
RSG + IYVIGG++G + + E Y+P T TWS++P M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-11
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603
IY +GG++G +R SVE Y+ N+W+ + M RS + G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 6/174 (3%)
Query: 575 KYNYTENQWSLIAPMNVERSDAS--ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632
K + + +I + ++T IYI N Y P T+
Sbjct: 221 KIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHIT-MSIFTYNYITNYSPLSEINTI 279
Query: 633 IEPMRHRRSGVSCIAYHECIYVIGGFNG-MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691
I+ H + + IY IGG N + + Y+ TK+W++VP++ PR N
Sbjct: 280 ID--IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG 337
Query: 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
+ V ++ I+ IGG ++ VE + +W E + R + L
Sbjct: 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNL 391
|
Length = 534 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 97 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 186 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 231
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 556
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 129
PR+ G V+G IYVIGG+DG + +S ++ T W ++ M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 543
PR+ G V+G IYVIGG+DG + +S ++ T W ++ M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PRS + V+ I+ IGG++G ++ VE YD +T+ W + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-10
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 699 IFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744
I+ +GGF+G + VE YD +T++W M RS VI G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 502 HGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 560
+ +A++ I + GG++ N N N K+ E+ PM RC S AV D IYA
Sbjct: 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYA 356
Query: 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGH 614
+GG NG + ++E Y +++W ++ M + S L IYI GG H
Sbjct: 357 IGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEH 410
|
Length = 557 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 37/253 (14%)
Query: 487 WVKIDQVDPMGP--RAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 542
W+K++Q GP R HG AV+G +Y GG NE+ + F+ T W IAP
Sbjct: 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPA 67
Query: 543 NFKRCYVSTAVHQDV-----IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE----- 592
N +S + V +Y GG + +R + Y+ +N+W+ + ++ E
Sbjct: 68 NGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127
Query: 593 RSDASATTLQGKIYITGGFNGHNCLN------SCEVYDPECNQWT-LIEPMRH--RRSGV 643
R+ S + + +Y+ GG + + + E Y+ +W L +P + +R G
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187
Query: 644 SCIAYHECIYVIGGFNGMSRMCNGEK---------YNPVTKTWSQVPDM---YNPRSNFA 691
I+V+ GF S + G+ ++P + W++V + RS FA
Sbjct: 188 GFAVVQGKIWVVYGF-ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFA 246
Query: 692 IEVIDDMIFAIGG 704
V+ I GG
Sbjct: 247 HAVVGKYIIIFGG 259
|
Length = 341 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 6e-09
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 614 HNCLNSC-EVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG-EKYN 671
+N N C VY+ ++++I + + + I + GG+N + N K N
Sbjct: 267 YNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
K ++P M R F++ VIDD I+AIGG NG +ECY D+W DM
Sbjct: 327 IENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP 386
Query: 732 IYRSALSACVI 742
I S+ CV+
Sbjct: 387 IALSSYGMCVL 397
|
Length = 557 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 8e-09
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGG 149
IG +YV GG D + YN F+ T WK + P+ R + S A ++ +Y GG
Sbjct: 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
Query: 150 YNGQRRQNSVEKYNYTENQW--------SLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSC 201
+ R +++ YN + +W S ++ V ++V+ GF+G E +
Sbjct: 287 VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDV 345
Query: 202 RCFNAVTKVWKEIAPMNFKRC----YVSTAVHQDVI 233
++ V W ++ + + S AV + ++
Sbjct: 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381
|
Length = 470 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 9e-09
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 88 HGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 146
+ +A++ I + GG++ N N N K+ E+ PM RC S AV D IYA
Sbjct: 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYA 356
Query: 147 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQN-----VTYNIYVIGGFDGNEYYNSC 201
+GG NG + ++E Y +++W ++ M + + + IY+IGG + Y S
Sbjct: 357 IGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416
Query: 202 RCFNAV 207
N++
Sbjct: 417 HHMNSI 422
|
Length = 557 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-08
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCM 178
IY +GG++G +R SVE Y+ N+W+ + M
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP 36
|
Length = 47 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 152
+G +Y+IGG+ NE +N+ N ++ W I PMN R Y S + +Y +GG
Sbjct: 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN 329
Query: 153 QRRQNSVEKYNYTENQW----SLIAPM-NCMIQNVTYNIYVIGG 191
SVE++ + + W SL+ P N + ++ IYVIGG
Sbjct: 330 ---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGG 370
|
Length = 480 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 535 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL----IAPMN 590
W + + + Y ++ ++ IY +GG N +SV + E++ +L + +
Sbjct: 52 KWVKAGQLPYAAAYGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLP 111
Query: 591 VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY 648
+ SAT GK+Y+ GG N ++ E +W + P R V C+
Sbjct: 112 FAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPV-CVKL 170
Query: 649 HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY---NPRS---NFAIEVIDDMIFAI 702
+YV GG + ++ +G KY+P T TW +V D P S +I + + ++ I
Sbjct: 171 QNELYVFGGGDNIAYT-DGYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLLCI 229
Query: 703 GGFN 706
GGFN
Sbjct: 230 GGFN 233
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 72 RWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 128
+W+K++Q + G R HG A +G IY GG F N+ + F+ T+ W I+P
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW-SISPA 210
Query: 129 N--------FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM----- 175
VS +Y GG + R+ N ++ T N+W L+ P+
Sbjct: 211 TGDVPHLSCLGVRMVSIG---STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT 267
Query: 176 ----NCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVW 211
+ M + N+YV GG + +N V K W
Sbjct: 268 PRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKW 306
|
Length = 470 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 220 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R V IY +GGY+G + +SVE Y+ N
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNT 38
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 84 PRAYHGTAVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 132
PR H +G IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 498 PRAYHGTAVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 546
PR H +G IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 640 RSGVSCIAYHECIYVIGGFNGMSRMCN-GEKYNPVTKTWSQVPDMYNPR 687
R+G S ++ IYV GG++ S+ N Y+P T +W ++P + PR
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 9e-07
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 576 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIE 634
YN ++S+I+ + + ++ + +I I GG+N +N LN +VY +E
Sbjct: 277 YNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLN--KVYKINIENKIHVE 334
Query: 635 --PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692
PM R S + IY IGG NG + E Y W +PDM S++ +
Sbjct: 335 LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM 394
Query: 693 EVIDDMIFAIGG---FNGVTTIYHVECYDEKTDE 723
V+D I+ IGG T+++H+ D + D
Sbjct: 395 CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428
|
Length = 557 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 593 RSDASATTLQGKIYITGGF-NGHNCLNSCEVYDPECNQWTLIEPMRHRR 640
R+ SA ++ GKIY+ GG+ NG N VYDPE W + P+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 186 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
IYVIGG+DG + +S ++ T W ++ M
Sbjct: 14 IYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 157 NSVEKYNYTENQWSLIA--PMNCMIQNVTYN--IYVIGGFDGNEY-YNSCRCFNAVTKVW 211
+ ++ + I +V N IY IGG + N NS ++ TK W
Sbjct: 264 YNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323
Query: 212 KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFER 268
++ + + R V + IY +GG N+VE + E++ + E +F R
Sbjct: 324 NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR 380
|
Length = 534 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 162 YNYTENQWSLIAPMNCMIQN-----VTYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIA 215
YN ++S+I+ + I N V I + GG++ N N N K+ E+
Sbjct: 277 YNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP 336
Query: 216 PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKI 260
PM RC S AV D IYA+GG NG + ++E Y +++ K+
Sbjct: 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381
|
Length = 557 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIG 94
++ +GG+ GG VE YD ++W + M PR+ HG AVI
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVIN 46
|
Length = 47 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIG 508
++ +GG+ GG VE YD ++W + M PR+ HG AVI
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVIN 46
|
Length = 47 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 546 RCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQWSLIAPMNVER 593
R S IY GGY NG + N V Y+ W + P+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 603 GKIYITGGFNGHN-CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY 648
GKIY+ GG LN VYD + N W + + R+G +
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-05
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 593 RSDASATTLQ-GKIYITGGFNG-HNCLNSCEVYDPECNQWTLIEPM 636
R+ ++T++ G++Y+ GG N + L+ V+D N WT + +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 132 RCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQWSLIAPMNC 177
R S IY GGY NG + N V Y+ W + P+
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPT 48
|
Length = 50 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 73 WVKIDQVDPMGP--RAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 128
W+K++Q GP R HG AV+G +Y GG NE+ + F+ T W IAP
Sbjct: 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPA 67
Query: 129 NFKRCYVSTAVHQDV-----IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 176
N +S + V +Y GG + +R + Y+ +N+W+ + ++
Sbjct: 68 NGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD 120
|
Length = 341 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 84 PRAYHGTAVIGYN-IYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPM 128
PRAYH + IG +Y+ GG + + + F+ T W + +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 498 PRAYHGTAVIGYN-IYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPM 542
PRAYH + IG +Y+ GG + + + F+ T W + +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
|
Length = 49 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 548 YVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY 606
Y S V ++I A GGYN N V K N + PM R S + IY
Sbjct: 297 YASAIVDNEIIIA-GGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY 355
Query: 607 ITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 657
GG NG N + E Y ++W ++ M S + IY+IGG
Sbjct: 356 AIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406
|
Length = 557 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 177 CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAM 236
C +V +Y+IGG+ NE +N+ N ++ W I PMN R Y S + +Y +
Sbjct: 265 CTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVV 324
Query: 237 GG 238
GG
Sbjct: 325 GG 326
|
Length = 480 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 232 VIYAMGGYNGQRRQNSVEKYNYTENQ 257
IY +GG++G +R SVE Y+ N+
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNK 26
|
Length = 47 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 652 IYVIGGFNGMSRMCNG-EKYNPVTKTWSQVPDMYNPRSNFAI 692
IYV GG N Y+ T TW ++ D+ PR+ A
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAA 45
|
Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 5e-04
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 175 MNCMIQNVTYN--IYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 221
V+ IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 43 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKI 76
V ++ IGG+ GG VE YD + W K+
Sbjct: 9 VLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 457 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKI 490
V ++ IGG+ GG VE YD + W K+
Sbjct: 9 VLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYH-VECYDEKTDEWYEATDMNIYR 734
PR+ + + I+ GG++ + + V YD +T W + + R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 96 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 140
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 185 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 229
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 510 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 577 NYTENQWSLIAPM-NVERSDASATTLQGKIYITGGFNGHN------CLNSCEVYDPECNQ 629
N W+ IA R A A + GK+Y+ GG N + YDP+ N
Sbjct: 58 NAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117
Query: 630 WTLIEPMRHRRS--GVSCIAYHEC-IYVIGGFN 659
W + R G ++ H Y+ GG N
Sbjct: 118 WQKL-DTRSPVGLAGHVAVSLHNGKAYITGGVN 149
|
Length = 376 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 503 GT-AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVI 558
GT A+ +YV G G +Y NA +K W +IA F R A +
Sbjct: 32 GTGAIDNNTVYVGLGSAGTSWYK--LDLNAPSKGWTKIA--AFPGGPREQAVAAFIDGKL 87
Query: 559 YAMGGYNGQ-------RRQNSVEKYNYTENQWS---LIAPMNVERSDASATTLQG-KIYI 607
Y GG G+ + + V KY+ N W +P+ + + A +L K YI
Sbjct: 88 YVFGG-IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL--AGHVAVSLHNGKAYI 144
Query: 608 TGGFNGH 614
TGG N +
Sbjct: 145 TGGVNKN 151
|
Length = 376 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 502 HGT-AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDV 557
+GT A+IG +YV G G +Y +K W++IA +F R A
Sbjct: 10 NGTGAIIGDKVYVGLGSAGTSWYK--LDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGK 65
Query: 558 IYAMGGYNGQ-------RRQNSVEKYNYTENQWS-LIAPMNVERSDASATTLQ-GKIYIT 608
+Y GG G+ + + V +Y+ +N W L V AS +L G+ Y T
Sbjct: 66 LYVFGG-IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFT 124
Query: 609 GGFNGH 614
GG N +
Sbjct: 125 GGVNKN 130
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 19/97 (19%)
Query: 577 NYTENQWSLIAPM-NVERSDASATTLQGKIYITGGFNGHN-------CLNSCEVYDPECN 628
W IA R+ A A + GK+Y+ GG G + YDP+ N
Sbjct: 37 KKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGG-IGKANSEGSPQVFDDVYRYDPKKN 95
Query: 629 QWTLIEPMRHRRS-----GVSCIAYHEC-IYVIGGFN 659
W ++ RS G S + H Y GG N
Sbjct: 96 SWQKLD----TRSPVGLLGASGFSLHNGQAYFTGGVN 128
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLT 304
KL + E+NV LL D+ + +LC +F+ +L
Sbjct: 62 KLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-----RCYVSTAVHQDVIYAM 147
+G +Y+ GG D ++ ++ V W + ++ + R + S A ++ +Y
Sbjct: 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVF 143
Query: 148 GG------YNGQRRQNSVEKYNYTENQW 169
GG R ++E YN + +W
Sbjct: 144 GGVSKGGLMKTPERFRTIEAYNIADGKW 171
|
Length = 341 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 14 IETFKFLYDLEL----IAQIDGEVPTPEIARPRVPH--EILFAIGGWSGGSPTDFVETYD 67
I+ +++DLE I+ G+VP R+ L+ GG + ++D
Sbjct: 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD 250
Query: 68 TRADRWVKIDQVD--PMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 125
T + W + V+ P PR++H A N+YV GG + +N V K W
Sbjct: 251 TTTNEWKLLTPVEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC 309
Query: 126 A-PMN--FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 170
+ P + R V Q ++ + G+NG + V Y+ +++W+
Sbjct: 310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWT 356
|
Length = 470 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| KOG4693|consensus | 392 | 100.0 | ||
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| KOG4693|consensus | 392 | 100.0 | ||
| KOG0379|consensus | 482 | 99.96 | ||
| KOG4152|consensus | 830 | 99.96 | ||
| KOG0379|consensus | 482 | 99.96 | ||
| KOG1230|consensus | 521 | 99.95 | ||
| KOG1230|consensus | 521 | 99.94 | ||
| KOG4152|consensus | 830 | 99.94 | ||
| KOG4350|consensus | 620 | 99.78 | ||
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.77 | |
| KOG2075|consensus | 521 | 99.71 | ||
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.67 | |
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 99.65 | |
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 99.54 | |
| KOG2437|consensus | 723 | 99.41 | ||
| KOG2437|consensus | 723 | 99.4 | ||
| PF13964 | 50 | Kelch_6: Kelch motif | 99.37 | |
| KOG4682|consensus | 488 | 99.32 | ||
| PF13964 | 50 | Kelch_6: Kelch motif | 99.2 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 99.15 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.09 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 99.08 | |
| KOG4591|consensus | 280 | 99.07 | ||
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 99.02 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.02 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.95 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.92 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.91 | |
| PLN02772 | 398 | guanylate kinase | 98.89 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.79 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.76 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.61 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.56 | |
| PLN02772 | 398 | guanylate kinase | 98.49 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.45 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.39 | |
| KOG0783|consensus | 1267 | 98.31 | ||
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 98.31 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.18 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 98.14 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.12 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.85 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.81 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.75 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.71 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.48 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.48 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.44 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.11 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.08 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 96.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.45 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.06 | |
| KOG0310|consensus | 487 | 95.94 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.91 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 95.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.64 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 95.45 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.2 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.19 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.14 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.11 | |
| KOG2055|consensus | 514 | 95.08 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.96 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 94.86 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.83 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 94.6 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.43 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.41 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.13 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.12 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.11 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 94.02 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.92 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 93.82 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.78 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 93.59 | |
| KOG0310|consensus | 487 | 93.55 | ||
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 93.38 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.35 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.35 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 93.07 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 93.01 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.89 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 92.85 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 92.8 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 92.71 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 92.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 92.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.07 | |
| PTZ00421 | 493 | coronin; Provisional | 91.79 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 91.17 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 91.04 | |
| KOG2055|consensus | 514 | 91.0 | ||
| PF01466 | 78 | Skp1: Skp1 family, dimerisation domain; InterPro: | 90.85 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 90.56 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 90.32 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 90.29 | |
| KOG0772|consensus | 641 | 90.15 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 90.03 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.54 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.34 | |
| KOG1987|consensus | 297 | 89.33 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 88.99 | |
| PTZ00420 | 568 | coronin; Provisional | 88.95 | |
| KOG2048|consensus | 691 | 88.45 | ||
| KOG1036|consensus | 323 | 88.38 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 88.05 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 87.99 | |
| KOG1036|consensus | 323 | 87.57 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 86.97 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 86.66 | |
| KOG2075|consensus | 521 | 85.58 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 85.38 | |
| KOG0316|consensus | 307 | 85.1 | ||
| KOG2716|consensus | 230 | 85.01 | ||
| KOG3473|consensus | 112 | 84.76 | ||
| KOG0511|consensus | 516 | 84.55 | ||
| KOG3545|consensus | 249 | 84.45 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 84.39 | |
| KOG0289|consensus | 506 | 83.43 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 83.17 | |
| KOG0316|consensus | 307 | 83.06 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 82.64 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 82.58 | |
| KOG0646|consensus | 476 | 81.65 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 80.58 | |
| PRK10115 | 686 | protease 2; Provisional | 80.57 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 80.49 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 80.19 |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-85 Score=736.45 Aligned_cols=518 Identities=36% Similarity=0.653 Sum_probs=486.4
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
..++.|+..+++++.||++| .+.+.|+.+++|++.++++.+++.+++|+||+++.|+.+||++||.+|++|||+.+++.
T Consensus 46 ~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~ 125 (571)
T KOG4441|consen 46 REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDA 125 (571)
T ss_pred eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHH
Confidence 45678888999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHH
Q psy17309 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELI 375 (824)
Q Consensus 296 c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av 375 (824)
|++||+++++++||++|..+|+.|++.+|.+.+..|+.+||.++. .+++|++|+.++|..+|++|.|++.+|+.||+++
T Consensus 126 C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~-~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~ 204 (571)
T KOG4441|consen 126 CCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVS-KTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAA 204 (571)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh-ccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 7889999999999999999999999999999999
Q ss_pred HHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCCccCC
Q psy17309 376 IRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIARP 455 (824)
Q Consensus 376 ~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (824)
++|++||.+.|++++.+|+++||++++++.++.+.+...+++..++.|+.++.++++++...... ..++. +..+|
T Consensus 205 ~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~----~~~~~-~~t~~ 279 (571)
T KOG4441|consen 205 MRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRR----PVMQS-PRTRP 279 (571)
T ss_pred HHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccC----ccccC-CCccc
Confidence 99999999999999999999999999999999999999999999999999999999876542211 11222 36667
Q ss_pred C-CCCCEEEEEccCCC-CCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC-CCcccceEEEEECC
Q psy17309 456 R-VPHEILFAIGGWSG-GSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAV 532 (824)
Q Consensus 456 r-~~~~~l~~~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~ 532 (824)
| ...+.++++||... ....+.+++|||.+++|.. .+++|.+|..+++++++++||++||++ +....+++++|||.
T Consensus 280 r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~--~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 280 RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS--LAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEee--cCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC
Confidence 7 56789999999986 7788999999999999999 778889999999999999999999999 78889999999999
Q ss_pred CCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccC
Q psy17309 533 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN 612 (824)
Q Consensus 533 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 612 (824)
+++|..+++|+.+|..+++++++|.||++||.++...++++++|||.+++|+.+++|+.+|++|++++++|+||++||.+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE
Q psy17309 613 GHN-CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691 (824)
Q Consensus 613 ~~~-~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (824)
+.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||.++...+.+|++|||.+++|+.+++|+.+|..++
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 876 8999999999999999999999999999999999999999999887678889999999999999999999999999
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEE
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 742 (824)
+++++++||++||.++...+++++.|||.+++|+...++...|...+++++
T Consensus 518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence 999999999999999999999999999999999999885556666555544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-78 Score=680.90 Aligned_cols=483 Identities=18% Similarity=0.279 Sum_probs=430.0
Q ss_pred ccCcceeeeeeecceEEEE-ccccccc-ccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQR-RQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~-~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
.++.|+..+++.+.||++| .+.+.|+ .+++|+|+++++++|+.+|+|+|||+ |+.+|+++||.+|++||++.|++.
T Consensus 37 ~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~ 114 (557)
T PHA02713 37 EIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTD 114 (557)
T ss_pred EEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHH
Confidence 4678888999999999998 6667765 58999999999999999999999997 789999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCC-cccCChHHHHHH
Q psy17309 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDE-LNVKSEETVWEL 374 (824)
Q Consensus 296 c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~-L~v~~E~~v~~a 374 (824)
|++||+++|+++||++++.+|..+.+..|.++|.+|+.+||.+|+ ++++|++|+.++|.++|++|+ |+|.+|+.||+|
T Consensus 115 C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~-~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~ea 193 (557)
T PHA02713 115 CESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI-TTDAFKKTVFEILFDIISTNDNVYLYREGYKVTI 193 (557)
T ss_pred HHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh-CChhhhhCCHHHHHHHhccccccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999 789999999999999999987 799999999999
Q ss_pred HHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCCccC
Q psy17309 375 IIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIAR 454 (824)
Q Consensus 375 v~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (824)
+++|++||+++|.+ +.+||++|||+++++.++. .+...+++...+.|.+++.++++.. ...
T Consensus 194 v~~W~~~d~~~r~~-~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~-----------------~~~ 254 (557)
T PHA02713 194 LLKWLEYNYITEEQ-LLCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNR-----------------NII 254 (557)
T ss_pred HHHHHhcCHHHHHH-HhhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhc-----------------ccC
Confidence 99999999887766 6699999999999998876 6777788889999999998876421 122
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC-CCcccceEEEEECCC
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVT 533 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~ 533 (824)
||. ..+++.||.. ......+++||+.+++|.. .+++|.+|..+++++++++||++||.+ +....+++++|||.+
T Consensus 255 ~r~--~~l~~~~g~~-~~~~~~v~~yd~~~~~W~~--l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 255 PRQ--LCLVCHDTKY-NVCNPCILVYNINTMEYSV--ISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIEN 329 (557)
T ss_pred Ccc--eEEEEecCcc-ccCCCCEEEEeCCCCeEEE--CCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCC
Confidence 443 4566666532 2233568999999999999 567888899999999999999999975 344578999999999
Q ss_pred CceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 534 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
++|..+++||.+|..+++++++|+||++||.++...++++++|||.+++|+.+++||.+|..+++++++|+|||+||.++
T Consensus 330 n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 330 KIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCc
Confidence 99999999999999999999999999999988766788999999999999999999999999999999999999999864
Q ss_pred C------------------CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCc-cceEEEEeCCC
Q psy17309 614 H------------------NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSR-MCNGEKYNPVT 674 (824)
Q Consensus 614 ~------------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~ 674 (824)
. ..++++++|||++++|+.+++|+.+|..+++++++|+||++||.++... .+.+++|||.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 2 1257899999999999999999999999999999999999999764333 35689999999
Q ss_pred -CCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCC
Q psy17309 675 -KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 730 (824)
Q Consensus 675 -~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (824)
++|+.+++||.+|..+++++++|+||++||.++. .++++|||.+++|+.+++-
T Consensus 490 ~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 490 YNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCCeeEccccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhh
Confidence 8999999999999999999999999999998763 4799999999999998653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-70 Score=625.91 Aligned_cols=495 Identities=25% Similarity=0.385 Sum_probs=427.9
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++++.+|++| .+.+. +++|++++ ++++|+.+|+|+|||++.++.+|+++||.+|++||++.|++.|
T Consensus 22 ~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C 97 (534)
T PHA03098 22 IIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLC 97 (534)
T ss_pred EEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4566677777777777777 34443 68899999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHH
Q psy17309 297 CDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELII 376 (824)
Q Consensus 297 ~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~ 376 (824)
++||.++++.+||+.++.+|+.|++.+|.++|.+||.+||.++. ++++|++|+.++|..+|++|.|++.+|+.||++++
T Consensus 98 ~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~-~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~ 176 (534)
T PHA03098 98 INYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIY-NDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIII 176 (534)
T ss_pred HHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-cCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 68899999999999999999999999999999999
Q ss_pred HHHhcCccchHHHHHHhhhhccCCCCChHHHHhhcc------CCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCC
Q psy17309 377 RWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVK------HHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTP 450 (824)
Q Consensus 377 ~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 450 (824)
+|++++.++|.+++.+||++|||++++++++.+.+. +.+++ .++.|...+.++..+...
T Consensus 177 ~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------- 241 (534)
T PHA03098 177 KWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLNK-------------- 241 (534)
T ss_pred HHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhcccC--------------
Confidence 999999999999999999999999999999987664 55555 777898888776654210
Q ss_pred CccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCC-cccceEEEE
Q psy17309 451 EIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN-EYYNSCRCF 529 (824)
Q Consensus 451 ~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~y 529 (824)
...+.+.....+++.||.. .....+..|++..++|..++ +.+ .+..++++++++.||++||.... ...+++++|
T Consensus 242 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 242 ILPRSSTFGSIIYIHITMS--IFTYNYITNYSPLSEINTII--DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred CCcCccCCCcceEeecccc--hhhceeeecchhhhhccccc--Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 0111111223455555543 23345667899899998853 333 24457888999999999998653 356789999
Q ss_pred ECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEc
Q psy17309 530 NAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITG 609 (824)
Q Consensus 530 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~G 609 (824)
|+.+++|..+++||.+|..|++++++++||++||..+....+++++||+.+++|+.+++||.+|.+|++++++++|||+|
T Consensus 317 d~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~G 396 (534)
T PHA03098 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396 (534)
T ss_pred eCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEEC
Confidence 99999999999999999999999999999999998866678899999999999999999999999999999999999999
Q ss_pred ccCC-CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEEEeCCCCCEEECCCCCC
Q psy17309 610 GFNG-HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS---RMCNGEKYNPVTKTWSQVPDMYN 685 (824)
Q Consensus 610 G~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~ 685 (824)
|... ...++++++||+.+++|+.++++|.+|.+++++.++++||++||.+... ..+.+++||+.+++|+.++++|.
T Consensus 397 G~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 476 (534)
T PHA03098 397 GISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF 476 (534)
T ss_pred CcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc
Confidence 9743 3457899999999999999999999999999999999999999975433 25679999999999999999999
Q ss_pred CCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 686 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
+|..+++++++++||++||.+.....+++++||+++++|+.++.+|......
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 9999999999999999999987666789999999999999998877655443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=596.21 Aligned_cols=442 Identities=22% Similarity=0.359 Sum_probs=374.8
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEE--eeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEK--YNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQ 293 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l--~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~ 293 (824)
..++.|+..++++++||++| .+.|.|+++ +|.+ .++++++++.||+|+|||++.|+.+||++||.||++||++.++
T Consensus 31 ~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~ 109 (480)
T PHA02790 31 GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFII 109 (480)
T ss_pred cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHH
Confidence 35678888999999999999 667888855 5665 3899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcC-chhhhcCCHHHHHHHhcCCCcccCChHHHH
Q psy17309 294 DLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARE-SEEIVFISEQELEEIISSDELNVKSEETVW 372 (824)
Q Consensus 294 ~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~-~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~ 372 (824)
+.|++||+++|+++||++|+.+|+.|++++|.++|.+||.+||.+|+++ .++|++|+. .++|++|.|++.+|++||
T Consensus 110 ~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~ 186 (480)
T PHA02790 110 YTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVV 186 (480)
T ss_pred HHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999943 389999996 679999999999999999
Q ss_pred HHHHHHHhcCccchHHHHHHhhhh-ccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q psy17309 373 ELIIRWIDYDPENRKKHIVSLMKN-IRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPE 451 (824)
Q Consensus 373 ~av~~W~~~~~~~r~~~~~~ll~~-vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 451 (824)
+++++|++++. .|...+.+++++ ||++++++..+.. +..++.++..++..
T Consensus 187 eav~~Wl~~~~-~~~~~l~~~vr~~ir~~~l~~~~l~~-------------~~~~~~~~~~~~~~--------------- 237 (480)
T PHA02790 187 DFVIKWYMKRR-NRLGNLLLLIKNVIRSNYLSPRGINN-------------VKWILDCTKIFHCD--------------- 237 (480)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHhcCChhhCCHHHHHH-------------HHHHHHHHHHhhcc---------------
Confidence 99999999863 355666666666 8888888776632 23344444433211
Q ss_pred ccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC
Q psy17309 452 IARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA 531 (824)
Q Consensus 452 ~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~ 531 (824)
..||.... +... .+.+..++|..+. .....+.+++.||++||.++....+.+++|||
T Consensus 238 -~~~r~~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp 294 (480)
T PHA02790 238 -KQPRKSYK--YPFI------------EYPMNMDQIIDIF--------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNY 294 (480)
T ss_pred -cccccccc--cccc------------ccCCcccceeecc--------CCcceEEECCEEEEEcCCCCCCcCCeEEEEEC
Confidence 12222111 0000 1234556676521 11223457999999999876667788999999
Q ss_pred CCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEccc
Q psy17309 532 VTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611 (824)
Q Consensus 532 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 611 (824)
.+++|..+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|+.+++||.+|.+|++++++|+|||+||.
T Consensus 295 ~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 295 ISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH 371 (480)
T ss_pred CCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc
Confidence 99999999999999999999999999999999753 267999999999999999999999999999999999999998
Q ss_pred CCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE
Q psy17309 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691 (824)
Q Consensus 612 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (824)
++. .+++++|||.+++|+.+++||.+|..+++++++|+||++||. +++|||++++|+.+++||.+|..++
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~ 441 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPE 441 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccE
Confidence 643 368999999999999999999999999999999999999983 6899999999999999999999999
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+++++|+||++||.++....+.+++|||++++|+..
T Consensus 442 ~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 442 LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 999999999999987665668899999999999875
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=457.31 Aligned_cols=491 Identities=24% Similarity=0.427 Sum_probs=364.0
Q ss_pred eeeeeecceEEEEcccccccccceeEEeeecccchhhhheeeccccee---cCHhhHHHHHHHHhhcChHhHHHHHHHHH
Q psy17309 224 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH---ITEDNVASLLLATDFFCMSKAQDLCCDFI 300 (824)
Q Consensus 224 ~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~---l~~~~v~~ll~~a~~~~i~~l~~~c~~~l 300 (824)
..+.+|+.++.+.+.||............ ..++. ++++.+ +.-.+|+
T Consensus 46 ~~~~aHR~VLAa~S~YFraMFt~~l~e~~--------------~~~i~l~~v~~~~l----------------~~ll~y~ 95 (571)
T KOG4441|consen 46 REFPAHRVVLAACSPYFRAMFTSGLKESK--------------QKEINLEGVDPETL----------------ELLLDYA 95 (571)
T ss_pred eeechHHHHHHhccHHHHHHhcCCccccc--------------ceEEEEecCCHHHH----------------HHHHHHh
Confidence 56779999999999999875544222111 11111 333333 3334555
Q ss_pred hh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HHHcCchhhhcCCHHHHHHHhcC
Q psy17309 301 KR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV-----------------DVARESEEIVFISEQELEEIISS 360 (824)
Q Consensus 301 ~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~-----------------~v~~~~~~f~~L~~~~l~~ll~~ 360 (824)
.. .|+.+|+.+++..|..+++..+++.|.+|+.+++. ++....+.|..-++.++.. ..
T Consensus 96 Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~--~e 173 (571)
T KOG4441|consen 96 YTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSK--TE 173 (571)
T ss_pred hcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc--cH
Confidence 44 67889999999999999999999999999998641 1221122333333322222 44
Q ss_pred CCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCC---ccccCCchhHHHHHHHHHHhhhh
Q psy17309 361 DELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHH---PYVQSTPECRPIIIETFKFLYDL 437 (824)
Q Consensus 361 d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 437 (824)
++|.++.|+ +. .++.=-..+.+++++.+..+++|++.+.-.+......+.+. |++... ++.+.......+
T Consensus 174 efl~L~~~~-l~-~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~-----~l~~~v~~~~~~ 246 (571)
T KOG4441|consen 174 EFLLLSLEE-LI-GLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQ-----FLVEIVESEPLI 246 (571)
T ss_pred HhhCCCHHH-HH-hhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHH-----HHHHHHhhhhhh
Confidence 455544333 22 22332345566777889999999999876654333322221 333221 111111110000
Q ss_pred hhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEccc--CCCCCCCceeEEEEECCEEEEEe
Q psy17309 438 ELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ--VDPMGPRAYHGTAVIGYNIYVIG 515 (824)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~r~~~~~~~~~~~lyv~G 515 (824)
. . .+.+. .. ..+. .+|..++. +.++.+|..... ...+.||++|
T Consensus 247 ~----------~----~~~c~----------------~~--l~ea--~~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vG 291 (571)
T KOG4441|consen 247 K----------R----DSACR----------------DL--LDEA--KKYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVG 291 (571)
T ss_pred c----------c----CHHHH----------------HH--HHHH--HHHhhCcccCccccCCCcccCc-CCCCeEEEEC
Confidence 0 0 00000 00 0000 01111111 002222222222 4468899999
Q ss_pred ecCC-CcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCccc
Q psy17309 516 GFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVER 593 (824)
Q Consensus 516 G~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r 593 (824)
|..+ ....+.+.+|||.+++|..+++||.+|..+++++++|.||++||.+ +...++++|+|||.+++|+.+++|+.+|
T Consensus 292 G~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R 371 (571)
T KOG4441|consen 292 GYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR 371 (571)
T ss_pred CCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence 9986 6778999999999999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC-ccceEEEEeC
Q psy17309 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS-RMCNGEKYNP 672 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~ 672 (824)
..+++++++|.||++||.++...++++|+|||.+++|+.+++|+.+|.+|++++++++||++||.++.. .++++++|||
T Consensus 372 ~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 372 SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988777 7999999999
Q ss_pred CCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccc
Q psy17309 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752 (824)
Q Consensus 673 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 752 (824)
.+++|+.+++|+.+|.++++++++++||++||.++.....+++.|||.+++|+.+++|+.+|..++++++++++|+.++.
T Consensus 452 ~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 452 ETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF 531 (571)
T ss_pred CCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecc
Confidence 99999999999999999999999999999999998667788999999999999999999999999999999999998763
Q ss_pred cccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCCCcCcccccc
Q psy17309 753 HQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSNVSSSDGVMN 805 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~~~~~~~~~~ 805 (824)
.+. ..+-+++. ||+.+++|...+. +...|..++++.
T Consensus 532 ~~~---------~~l~~ve~-------ydp~~d~W~~~~~-~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 532 DGN---------NNLNTVEC-------YDPETDTWTEVTE-PESGRGGAGVAV 567 (571)
T ss_pred cCc---------cccceeEE-------cCCCCCceeeCCC-ccccccCcceEE
Confidence 322 23344554 9999999999999 999999888764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=409.02 Aligned_cols=459 Identities=15% Similarity=0.184 Sum_probs=325.3
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeeccccee---cCHhhHHHHHHHHhhcChHhHHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH---ITEDNVASLLLATDFFCMSKAQDLCCDF 299 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~---l~~~~v~~ll~~a~~~~i~~l~~~c~~~ 299 (824)
+..+.+|+.+|.+.++||............ ...++. ++.+.+.. ..+|
T Consensus 35 ~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~-------------~~~~v~l~~v~~~~~~~----------------ll~y 85 (557)
T PHA02713 35 GEEIKAHKTILAAGSKYFRTLFTTPMIIRD-------------LVTRVNLQMFDKDAVKN----------------IVQY 85 (557)
T ss_pred CCEEeehHHHHhhcCHHHHHHhcCCchhhc-------------cCceEEeccCCHHHHHH----------------HHHH
Confidence 457999999999999999765443221110 001222 23333333 3344
Q ss_pred Hhh-cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----HH------------cCchhhhcCCHHHHHHHhcCC
Q psy17309 300 IKR-LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVD-----VA------------RESEEIVFISEQELEEIISSD 361 (824)
Q Consensus 300 l~~-~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~-----v~------------~~~~~f~~L~~~~l~~ll~~d 361 (824)
+-. .++.+|+..++..|+.++++.|.+.|.+|+..++.. +. +....|.. +.+.++.+++
T Consensus 86 ~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~---~~f~~v~~~~ 162 (557)
T PHA02713 86 LYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM---SNIPTLITTD 162 (557)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH---HHHHHHhCCh
Confidence 433 488999999999999999999999999999987631 11 00111211 1222222222
Q ss_pred -CcccCChHHHHHHHHHHHhc----CccchHHHHHHhhhhccCCCCChHHHHhhccC--CccccCCch----hHHHHHHH
Q psy17309 362 -ELNVKSEETVWELIIRWIDY----DPENRKKHIVSLMKNIRLGLLETEFFREKVKH--HPYVQSTPE----CRPIIIET 430 (824)
Q Consensus 362 -~L~v~~E~~v~~av~~W~~~----~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~--~~~~~~~~~----~~~~i~~~ 430 (824)
++.+. ++.+..-+.. +..++++.++.+++|++.+...++.+.+.++. .+++..... ..+++...
T Consensus 163 ef~~L~-----~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~ 237 (557)
T PHA02713 163 AFKKTV-----FEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMY 237 (557)
T ss_pred hhhhCC-----HHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhh
Confidence 22222 2344444543 34567888999999999886555443322111 111111000 00000000
Q ss_pred HHHhhhhhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCE
Q psy17309 431 FKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 510 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~ 510 (824)
.+.... . .+.. ......+|. ..
T Consensus 238 ~~c~~~--------------------l----------------------~~a~--------~~~~~~~r~--------~~ 259 (557)
T PHA02713 238 PSCIQF--------------------L----------------------LDNK--------QNRNIIPRQ--------LC 259 (557)
T ss_pred HHHHHH--------------------H----------------------hhhh--------hhcccCCcc--------eE
Confidence 000000 0 0000 000111332 23
Q ss_pred EEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCC
Q psy17309 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPM 589 (824)
Q Consensus 511 lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~ 589 (824)
+++.||... .....+++||+.+++|..+++||.+|..+++++++++||++||.+ +...++++++|||.+++|+.+++|
T Consensus 260 l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m 338 (557)
T PHA02713 260 LVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM 338 (557)
T ss_pred EEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC
Confidence 455555211 123568999999999999999999999999999999999999975 344578999999999999999999
Q ss_pred CcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC-------
Q psy17309 590 NVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS------- 662 (824)
Q Consensus 590 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~------- 662 (824)
|.+|..+++++++|+||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 339 ~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 339 IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence 9999999999999999999999876678899999999999999999999999999999999999999975321
Q ss_pred -----------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEEECCC-CcEEeccC
Q psy17309 663 -----------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECYDEKT-DEWYEATD 729 (824)
Q Consensus 663 -----------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~-~~W~~~~~ 729 (824)
.++++++|||.+++|+.+++|+.+|..+++++++++||++||.++.. ..+.+++|||++ ++|+.+++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 25789999999999999999999999999999999999999986543 235689999999 89999999
Q ss_pred CCCCccceeEEEEcCccceeccccccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCC
Q psy17309 730 MNIYRSALSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSN 796 (824)
Q Consensus 730 ~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~ 796 (824)
||.+|..+++++++++||+.++..+. .+++ .||+.+++|+.+.+..++
T Consensus 499 m~~~r~~~~~~~~~~~iyv~Gg~~~~------------~~~e-------~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 499 TESRLSALHTILHDNTIMMLHCYESY------------MLQD-------TFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cCcccccceeEEECCEEEEEeeecce------------eehh-------hcCcccccccchhhhcCC
Confidence 99999999999999999998664431 1244 499999999988876554
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=350.07 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=143.7
Q ss_pred CCCCceeEEEEECCEEEEEeecCCC------cccceEEEEECCCCceEEeccCC---CCcceEEEEEECCEEEEEecccC
Q psy17309 496 MGPRAYHGTAVIGYNIYVIGGFDGN------EYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGGYNG 566 (824)
Q Consensus 496 ~~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~ 566 (824)
|.+|..|++++.+++|||+||.+.. ..++++++||+.+++|..++++. .+|..|++++++++||++||...
T Consensus 125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 204 (341)
T PLN02153 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFAT 204 (341)
T ss_pred CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccc
Confidence 3467788888889999999997532 13578999999999999998764 78999999999999999999642
Q ss_pred C--------CCCCeEEEEeCCCCcEEeecC---CCcccCceEEEEECCEEEEEcccCC---------CCcCCceEEEeCC
Q psy17309 567 Q--------RRQNSVEKYNYTENQWSLIAP---MNVERSDASATTLQGKIYITGGFNG---------HNCLNSCEVYDPE 626 (824)
Q Consensus 567 ~--------~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~ 626 (824)
. ...+++++||+.+++|+.++. +|.+|..|++++++++|||+||... ....+++++||++
T Consensus 205 ~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~ 284 (341)
T PLN02153 205 SILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE 284 (341)
T ss_pred ccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC
Confidence 1 125789999999999999864 7899999999999999999999731 2346799999999
Q ss_pred CCeEEEcC-----CCCCCCcceEEEEE--CCEEEEEecCCCC-CccceEEEEeCC
Q psy17309 627 CNQWTLIE-----PMRHRRSGVSCIAY--HECIYVIGGFNGM-SRMCNGEKYNPV 673 (824)
Q Consensus 627 ~~~W~~~~-----~~p~~r~~~~~~~~--~~~iyv~GG~~~~-~~~~~v~~yd~~ 673 (824)
+++|+.+. ++|.++..++++.+ +++||++||.+.. ..+.++++|+..
T Consensus 285 ~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 285 TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 99999885 56666655455443 4589999998654 568999999864
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=357.40 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=190.5
Q ss_pred CceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccC---CCCcceEEEEEECCEEEEEecccCCCCCCeEEE
Q psy17309 499 RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM---NFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 499 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
|..|++++++++|||+||.+....++++++||+.+++|+.++++ |.+|..|++++.+++||++||.+....++++++
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEE
Confidence 55678888999999999988767789999999999999999888 789999999999999999999987777889999
Q ss_pred EeCCCCcEEeecC---CCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC---CCCCcceEEEEEC
Q psy17309 576 YNYTENQWSLIAP---MNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM---RHRRSGVSCIAYH 649 (824)
Q Consensus 576 yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~ 649 (824)
||+.+++|+.+++ +|.+|.+|++++++++||++||.++. ..+++++||+.+++|+.++++ |.+|..|++++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9999999998864 67899999999999999999998754 368999999999999999754 8899999999999
Q ss_pred CEEEEEecCCC---------CCccceEEEEeCCCCCEEECCC------CCCCCcceEEE--EE--CCEEEEEccCCC-Cc
Q psy17309 650 ECIYVIGGFNG---------MSRMCNGEKYNPVTKTWSQVPD------MYNPRSNFAIE--VI--DDMIFAIGGFNG-VT 709 (824)
Q Consensus 650 ~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~--~~--~~~i~v~GG~~~-~~ 709 (824)
++|||+||... ....+++++||+.+++|+.++. .|.+|..++++ .+ ++.|+++||.+. +.
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~ 457 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND 457 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc
Confidence 99999999643 1235789999999999999864 35677766532 33 345999999975 45
Q ss_pred eeeEEEEEECCC
Q psy17309 710 TIYHVECYDEKT 721 (824)
Q Consensus 710 ~~~~v~~yd~~~ 721 (824)
.++++|+|++++
T Consensus 458 ~~~D~~~~~~~~ 469 (470)
T PLN02193 458 RFDDLFFYGIDS 469 (470)
T ss_pred cccceEEEecCC
Confidence 789999998875
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=342.77 Aligned_cols=274 Identities=22% Similarity=0.340 Sum_probs=227.0
Q ss_pred CCCCcEEEcccC--CCCCCCceeEEEEECCEEEEEeecCC--CcccceEEEEECCCCceEEeccCC-CCc---ceEEEEE
Q psy17309 482 TRADRWVKIDQV--DPMGPRAYHGTAVIGYNIYVIGGFDG--NEYYNSCRCFNAVTKVWKEIAPMN-FKR---CYVSTAV 553 (824)
Q Consensus 482 ~~~~~W~~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~-~~r---~~~~~~~ 553 (824)
+...+|..+... .+|.+|..|++++++++|||+||... ....+++++||+.+++|..+++++ .+| .+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 356779987543 36889999999999999999999853 234579999999999999988764 344 3788999
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-----CcccCceEEEEECCEEEEEcccCCC------CcCCceEE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-----NVERSDASATTLQGKIYITGGFNGH------NCLNSCEV 622 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~v~~ 622 (824)
++++||++||......++++++||+.+++|+.+++| |.+|..|++++++++|||+||.+.. ..++++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999987766788999999999999999887 8899999999999999999998632 13578999
Q ss_pred EeCCCCeEEEcCCCC---CCCcceEEEEECCEEEEEecCCCC--------CccceEEEEeCCCCCEEECCC---CCCCCc
Q psy17309 623 YDPECNQWTLIEPMR---HRRSGVSCIAYHECIYVIGGFNGM--------SRMCNGEKYNPVTKTWSQVPD---MYNPRS 688 (824)
Q Consensus 623 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~---~p~~r~ 688 (824)
||+++++|+.+++++ .+|.+|++++++++|||+||.+.. ...+++++||+.+++|++++. +|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998653 789999999999999999996421 125789999999999999864 688999
Q ss_pred ceEEEEECCEEEEEccCCC---------CceeeEEEEEECCCCcEEecc-----CCCCCccceeEEEEcC--ccceeccc
Q psy17309 689 NFAIEVIDDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEAT-----DMNIYRSALSACVIMG--LPNVYDYI 752 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~p~~r~~~~~~~~~~--~~~~~~~~ 752 (824)
.+++++++++|||+||... ....+++++||+++++|+.+. ++|..|..++++.+.+ ++|++++.
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence 9999999999999999732 224578999999999999884 5666676655555543 68988777
Q ss_pred ccc
Q psy17309 753 HQH 755 (824)
Q Consensus 753 ~~~ 755 (824)
...
T Consensus 324 ~~~ 326 (341)
T PLN02153 324 LPT 326 (341)
T ss_pred CCC
Confidence 655
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=362.19 Aligned_cols=473 Identities=17% Similarity=0.204 Sum_probs=320.9
Q ss_pred ceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHh
Q psy17309 222 CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301 (824)
Q Consensus 222 ~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~ 301 (824)
.+..+.+|+.+|.+.+.||......... ..++.|.. +.. ..+.-.+||.
T Consensus 19 ~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-----------------~~~i~l~~-~~~-------------~~~~~l~y~Y 67 (534)
T PHA03098 19 GGGIIKVHKIILSSSSEYFKKMFKNNFK-----------------ENEINLNI-DYD-------------SFNEVIKYIY 67 (534)
T ss_pred CCEEEEeHHHHHHhhhHHHHHHHhCCCC-----------------CceEEecC-CHH-------------HHHHHHHHhc
Confidence 4667899999999999998764333221 23444443 221 2334445653
Q ss_pred h---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------HHcCchhhhcCCHHHHHHHhcC-
Q psy17309 302 R---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVD-----------------VARESEEIVFISEQELEEIISS- 360 (824)
Q Consensus 302 ~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~-----------------v~~~~~~f~~L~~~~l~~ll~~- 360 (824)
. .++.+|+..++.+|+.++++.|++.|.+|+..++.. +.+.+.+|+. +.+.++.++
T Consensus 68 tg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~---~nf~~v~~~~ 144 (534)
T PHA03098 68 TGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR---NNIELIYNDP 144 (534)
T ss_pred CCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH---HHHHHHhcCc
Confidence 3 578999999999999999999999999999987521 1111112221 222233333
Q ss_pred CCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCC---ccccCCchhHHHHHHHHHHhhhh
Q psy17309 361 DELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHH---PYVQSTPECRPIIIETFKFLYDL 437 (824)
Q Consensus 361 d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 437 (824)
+++.++.| . +..+++=-..+...+.+.+..+++|++.+...+......+.+. +++. .+.+.+...+....
T Consensus 145 ~f~~l~~~-~-l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~-----~~~l~~~~~~~~~~ 217 (534)
T PHA03098 145 DFIYLSKN-E-LIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLS-----EEGIKKLKRWKLRI 217 (534)
T ss_pred hhhcCCHH-H-HHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccC-----HHHHHHHHHHHhhc
Confidence 44445422 2 2233322233345677788888888888765554333332222 1111 11111111100000
Q ss_pred hhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeec
Q psy17309 438 ELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGF 517 (824)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 517 (824)
. ...+.. .+++.. .......+.+ ... +|.. ..+..+++.||.
T Consensus 218 ~-----~~~~~~----~~~~~~-------------~~~~~~~~~~----------~~~--~~~~----~~~~~~~~~~g~ 259 (534)
T PHA03098 218 K-----KKKIVF----NKRCIK-------------IIYSKKYNLN----------KIL--PRSS----TFGSIIYIHITM 259 (534)
T ss_pred C-----Ccceec----cccchH-------------HHHHHHhccc----------CCC--cCcc----CCCcceEeeccc
Confidence 0 000000 000000 0000000000 000 1110 012345555554
Q ss_pred CCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCC-CCCeEEEEeCCCCcEEeecCCCcccCce
Q psy17309 518 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTENQWSLIAPMNVERSDA 596 (824)
Q Consensus 518 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 596 (824)
. .....+..|++.+++|..+++++. +..++++++++.||++||..... ..+++++||+.+++|+.+++||.+|..|
T Consensus 260 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~ 336 (534)
T PHA03098 260 S--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP 336 (534)
T ss_pred c--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc
Confidence 3 233456788999999999887764 44578899999999999987533 4578999999999999999999999999
Q ss_pred EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCC-CCccceEEEEeCCCC
Q psy17309 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNG-MSRMCNGEKYNPVTK 675 (824)
Q Consensus 597 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~ 675 (824)
++++++++||++||.++....+++++||+.+++|+.++++|.+|..++++.++++||++||... ...++++++||+.++
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 9999999999999998666788999999999999999999999999999999999999999643 334689999999999
Q ss_pred CEEECCCCCCCCcceEEEEECCEEEEEccCCCCc---eeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccc
Q psy17309 676 TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT---TIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752 (824)
Q Consensus 676 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 752 (824)
+|+.++++|.+|..+++++++++||++||.+... ..+.+++||+.+++|+.++++|.+|..++++++++++|++++.
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCC
Confidence 9999999999999999999999999999986433 2567999999999999999999999999999999999998765
Q ss_pred cccccchhhHhhhhhhcccccccccccccCCCCCccccCc
Q psy17309 753 HQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPS 792 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~ 792 (824)
..... .-.++ .||+..++|..++.
T Consensus 497 ~~~~~---------~~~v~-------~yd~~~~~W~~~~~ 520 (534)
T PHA03098 497 KYEYY---------INEIE-------VYDDKTNTWTLFCK 520 (534)
T ss_pred cCCcc---------cceeE-------EEeCCCCEEEecCC
Confidence 43211 11233 49999999998875
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=347.21 Aligned_cols=293 Identities=22% Similarity=0.323 Sum_probs=239.8
Q ss_pred CCEEEEEccCCCCCCCce--EEEEECCC----CcEEEcccC-CCCCCCceeEEEEECCEEEEEeecCC-C-cccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDF--VETYDTRA----DRWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGGFDG-N-EYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~--~~~yd~~~----~~W~~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~y 529 (824)
...|+.|+|..... .+. ++.+++.+ ++|..++.. .+|.+|..|+++++++.||++||... . ...+++++|
T Consensus 120 ~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 120 GGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred CCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEE
Confidence 35677888875432 444 44457655 799987543 46889999999999999999999753 2 244689999
Q ss_pred ECCCCceEEeccC---CC-CcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC---CcccCceEEEEEC
Q psy17309 530 NAVTKVWKEIAPM---NF-KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM---NVERSDASATTLQ 602 (824)
Q Consensus 530 d~~~~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~ 602 (824)
|+.+++|..++++ |. +|..|++++++++||++||.+....++++++||+.+++|+.++++ |.+|..|++++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~ 278 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE 278 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC
Confidence 9999999987653 33 356889999999999999988777789999999999999999887 8999999999999
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP---MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
++|||+||.+....++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++. ..+++++||+.+++|+.
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEE
Confidence 999999999877778899999999999999874 67789999999999999999997654 36899999999999999
Q ss_pred CCCC---CCCCcceEEEEECCEEEEEccCCC---------CceeeEEEEEECCCCcEEeccC------CCCCccceeEE-
Q psy17309 680 VPDM---YNPRSNFAIEVIDDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEATD------MNIYRSALSAC- 740 (824)
Q Consensus 680 ~~~~---p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~- 740 (824)
++++ |.+|..+++++++++|||+||... ....+++++||+.+++|+.++. .|.+|..++++
T Consensus 358 ~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~ 437 (470)
T PLN02193 358 VETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTT 437 (470)
T ss_pred eccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcccccee
Confidence 9754 889999999999999999999753 1245789999999999998854 35677766432
Q ss_pred -EEcC--ccceecccc
Q psy17309 741 -VIMG--LPNVYDYIH 753 (824)
Q Consensus 741 -~~~~--~~~~~~~~~ 753 (824)
.+.+ .++++++..
T Consensus 438 ~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 438 GTIDGKKGLVMHGGKA 453 (470)
T ss_pred eEEcCCceEEEEcCCC
Confidence 3333 377776554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=349.88 Aligned_cols=428 Identities=17% Similarity=0.196 Sum_probs=289.2
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
+-.+.+|+.+|.+.++||+........... . ....+ .+.++.+ .++...+|+-.
T Consensus 30 ~~~~~~HR~VLAa~S~YFraMF~~~~~Es~--~-~v~~~-------~~~v~~~----------------~l~~lldy~YT 83 (480)
T PHA02790 30 GGNIIVNSTILKKLSPYFRTHLRQKYTKNK--D-PVTRV-------CLDLDIH----------------SLTSIVIYSYT 83 (480)
T ss_pred CcEEeeehhhhhhcCHHHHHHhcCCccccc--c-ceEEE-------ecCcCHH----------------HHHHHHHhhee
Confidence 346889999999999999875443322110 0 00000 0123333 34445566744
Q ss_pred ---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HHHcCchhhhcCCHHHHHHHhcCCC
Q psy17309 303 ---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV-----------------DVARESEEIVFISEQELEEIISSDE 362 (824)
Q Consensus 303 ---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~-----------------~v~~~~~~f~~L~~~~l~~ll~~d~ 362 (824)
.|+.+|+..++..|..++++.|.+.|.+|+.+++. ++.+...+|..-++.++.+-...++
T Consensus 84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef 163 (480)
T PHA02790 84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNF 163 (480)
T ss_pred eeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhh
Confidence 68899999999999999999999999999998752 2332333444344443332001233
Q ss_pred cccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhc
Q psy17309 363 LNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQ 442 (824)
Q Consensus 363 L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 442 (824)
+.++. ..++.--+.+..++++.++.+++|++........+.+.+.. .+...--....+.+. ..... .
T Consensus 164 ~~L~~-----~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~--~ir~~~l~~~~l~~~-~~~~~-~---- 230 (480)
T PHA02790 164 DYLSM-----KLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKN--VIRSNYLSPRGINNV-KWILD-C---- 230 (480)
T ss_pred hhCCH-----HHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCChhhCCHHHHHHH-HHHHH-H----
Confidence 33321 23333334456678889999999988632111122222211 010000001111110 00000 0
Q ss_pred cCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcc
Q psy17309 443 IDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 522 (824)
Q Consensus 443 ~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 522 (824)
.+. +. . .+.+|... . +..++
T Consensus 231 ------------~~~----------------------~~----------~--~~~~r~~~------~--~~~~~------ 250 (480)
T PHA02790 231 ------------TKI----------------------FH----------C--DKQPRKSY------K--YPFIE------ 250 (480)
T ss_pred ------------HHH----------------------hh----------c--cccccccc------c--ccccc------
Confidence 000 00 0 00111110 0 00010
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
+.+.+.+|..... ...++..++.||++||.++....+++++|||.+++|..+++||.+|..+++++++
T Consensus 251 ------~~~~~~~~~~~~~------~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~ 318 (480)
T PHA02790 251 ------YPMNMDQIIDIFH------MCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN 318 (480)
T ss_pred ------cCCcccceeeccC------CcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC
Confidence 2345556765321 1224558999999999876667789999999999999999999999999999999
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
|+||++||.++ .+++++|||.+++|+.+++||.+|..+++++++|+||++||.++. .+.+++|||.+++|+.+++
T Consensus 319 ~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 319 NKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCC
Confidence 99999999854 267999999999999999999999999999999999999997543 3679999999999999999
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccccccccchhhH
Q psy17309 683 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLMEE 762 (824)
Q Consensus 683 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
||.+|..+++++++++||++||. +++|||++++|+.+++||.+|..+++++++++||+.++.....
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~------ 459 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS------ 459 (480)
T ss_pred CCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc------
Confidence 99999999999999999999983 6889999999999999999999999999999999997653211
Q ss_pred hhhhhhcccccccccccccCCCCCcccc
Q psy17309 763 KRQKLLAIEGRQRQNQSEEGNSSQQSVL 790 (824)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 790 (824)
.+-.++. ||+..++|+..
T Consensus 460 ---~~~~ve~-------Yd~~~~~W~~~ 477 (480)
T PHA02790 460 ---YIDTIEV-------YNNRTYSWNIW 477 (480)
T ss_pred ---ccceEEE-------EECCCCeEEec
Confidence 1223454 99999999754
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=328.91 Aligned_cols=258 Identities=20% Similarity=0.256 Sum_probs=214.3
Q ss_pred CCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC--CCCceEEeccCC-CCcceEEEEEECCEEEEEecccCCC-
Q psy17309 493 VDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA--VTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQR- 568 (824)
Q Consensus 493 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~- 568 (824)
+++|.+|..+++++++++|||+||... +++++||+ .+++|..+++|| .+|..+++++++++|||+||.....
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred CCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC
Confidence 457788998888899999999999742 67899996 578899999999 5899999999999999999985321
Q ss_pred -----CCCeEEEEeCCCCcEEeec-CCCcccCceEEE-EECCEEEEEcccCCCC--------------------------
Q psy17309 569 -----RQNSVEKYNYTENQWSLIA-PMNVERSDASAT-TLQGKIYITGGFNGHN-------------------------- 615 (824)
Q Consensus 569 -----~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~-------------------------- 615 (824)
.++++|+||+.+++|+.++ ++|.+|.+++++ +++++||++||.+...
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 4688999999999999997 567888888777 7899999999986321
Q ss_pred --------cCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEEEEe--CCCCCEEECCCC
Q psy17309 616 --------CLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGMS-RMCNGEKYN--PVTKTWSQVPDM 683 (824)
Q Consensus 616 --------~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~~ 683 (824)
..+++++|||.+++|+.+++||. +|..++++.++++|||+||..... ....++.|| +++++|+.+++|
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 14789999999999999999996 688999999999999999975332 234565555 577799999999
Q ss_pred CCCCc-------ceEEEEECCEEEEEccCCCC-----------------ceeeEEEEEECCCCcEEeccCCCCCccceeE
Q psy17309 684 YNPRS-------NFAIEVIDDMIFAIGGFNGV-----------------TTIYHVECYDEKTDEWYEATDMNIYRSALSA 739 (824)
Q Consensus 684 p~~r~-------~~~~~~~~~~i~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 739 (824)
|.+|. .+++++++++|||+||.+.. .....+++||+++++|+.+++||.+|..+++
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~ 317 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVS 317 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEE
Confidence 88763 44577889999999997521 1234789999999999999999999999999
Q ss_pred EEEcCccceeccccc
Q psy17309 740 CVIMGLPNVYDYIHQ 754 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~ 754 (824)
++++++||++++...
T Consensus 318 ~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 318 VSWNNGVLLIGGENS 332 (346)
T ss_pred EEcCCEEEEEeccCC
Confidence 899999999977543
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=322.46 Aligned_cols=256 Identities=21% Similarity=0.338 Sum_probs=215.5
Q ss_pred CCceeEEEEECCEEEEEeecCCC----------cccceEEEEE-CCC-CceEEeccCCCCcceEEEEEECCEEEEEeccc
Q psy17309 498 PRAYHGTAVIGYNIYVIGGFDGN----------EYYNSCRCFN-AVT-KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565 (824)
Q Consensus 498 ~r~~~~~~~~~~~lyv~GG~~~~----------~~~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 565 (824)
.+.++.++++++.|||+||.+.. ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||.+
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 56788899999999999998542 2346788886 332 37999999999999899999999999999988
Q ss_pred CCCCCCeEEEEeCCCCcE----EeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC-CC
Q psy17309 566 GQRRQNSVEKYNYTENQW----SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH-RR 640 (824)
Q Consensus 566 ~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r 640 (824)
+...++++++||+.+++| +.+++||.+|..|++++++++|||+||.......+++++||+.+++|+.++++|. +|
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 777789999999999998 7789999999999999999999999998655567899999999999999999884 78
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCC---CCC--cceE-EEEECCEEEEEccCCCCc-----
Q psy17309 641 SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY---NPR--SNFA-IEVIDDMIFAIGGFNGVT----- 709 (824)
Q Consensus 641 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~r--~~~~-~~~~~~~i~v~GG~~~~~----- 709 (824)
..+++++++++|||+||.+... ..++++||+++++|+.+++++ .|+ ..++ ++..+++||++||.+...
T Consensus 163 ~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 8898899999999999976433 457899999999999998763 233 3344 344479999999987421
Q ss_pred ---------------------------eeeEEEEEECCCCcEEeccCCC-CCccceeEEEEcCccceeccccc
Q psy17309 710 ---------------------------TIYHVECYDEKTDEWYEATDMN-IYRSALSACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 710 ---------------------------~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~ 754 (824)
..+++++||+.+++|+.++++| .+|..+++++++++||++++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecccc
Confidence 1367999999999999999888 58999999999999999876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=276.61 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=227.5
Q ss_pred cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcc-----cceEEEEECCCCceEEecc-------------CCCCcc
Q psy17309 486 RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY-----YNSCRCFNAVTKVWKEIAP-------------MNFKRC 547 (824)
Q Consensus 486 ~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~yd~~~~~W~~~~~-------------~~~~r~ 547 (824)
.|.. .....+.|.+|+++.++.+||-|||+..+.. --+++++|..+-+|.++++ .|..|+
T Consensus 3 ~WTV--HLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRY 80 (392)
T KOG4693|consen 3 TWTV--HLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRY 80 (392)
T ss_pred eEEE--EecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhc
Confidence 4655 4445557999999999999999999854322 2478999999999998875 245699
Q ss_pred eEEEEEECCEEEEEecccC-CCCCCeEEEEeCCCCcEEee---cCCCcccCceEEEEECCEEEEEcccCC--CCcCCceE
Q psy17309 548 YVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLI---APMNVERSDASATTLQGKIYITGGFNG--HNCLNSCE 621 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~v~ 621 (824)
+|+++.+++++|+.||.+. .+..+.++.|||++++|++. +-+|.+|.+|++|+.++.+|||||+.. ....++++
T Consensus 81 GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 81 GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred CceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 9999999999999999975 55678999999999999875 458999999999999999999999954 46789999
Q ss_pred EEeCCCCeEEEcC---CCCCCCcceEEEEECCEEEEEecCCCCC---------ccceEEEEeCCCCCEEECC---CCCCC
Q psy17309 622 VYDPECNQWTLIE---PMRHRRSGVSCIAYHECIYVIGGFNGMS---------RMCNGEKYNPVTKTWSQVP---DMYNP 686 (824)
Q Consensus 622 ~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~v~~yd~~~~~W~~~~---~~p~~ 686 (824)
.+|..|.+|+.+. ..|.-|..|+++++++.+|||||..+.. ..+.+..+|+.+..|...+ ..|..
T Consensus 161 ~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G 240 (392)
T KOG4693|consen 161 VLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG 240 (392)
T ss_pred eEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc
Confidence 9999999999985 4456689999999999999999964332 2467889999999999885 35889
Q ss_pred CcceEEEEECCEEEEEccCCCCc--eeeEEEEEECCCCcEEec---cCCCCCccceeEEEEcCccceeccccc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVT--TIYHVECYDEKTDEWYEA---TDMNIYRSALSACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~--~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~ 754 (824)
|.+|++.++++++|+|||.++.- ..+++|.|||.+..|+.+ +.-|.+|..+++++.++++|+|++-..
T Consensus 241 RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 241 RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999999999999999998753 568999999999999998 567999999999999999999965443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=315.18 Aligned_cols=259 Identities=20% Similarity=0.237 Sum_probs=212.9
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECC--CCceEEeccCC-CCcceEEEEEECCEEEEEecccC--
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAV--TKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNG-- 566 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~-- 566 (824)
.+++|.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|..+++++++++||++||...
T Consensus 22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 22 LPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred CCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 5678888888888999999999999643 458899986 47899999997 58999999999999999999764
Q ss_pred ----CCCCCeEEEEeCCCCcEEeecC-CCcccCceEEEE-ECCEEEEEcccCCC--------------------------
Q psy17309 567 ----QRRQNSVEKYNYTENQWSLIAP-MNVERSDASATT-LQGKIYITGGFNGH-------------------------- 614 (824)
Q Consensus 567 ----~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~-------------------------- 614 (824)
...++++++||+.+++|+.+++ +|.++.+|++++ .+++|||+||.+..
T Consensus 98 ~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 98 SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 1236889999999999999985 577888888777 79999999997531
Q ss_pred --------CcCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEE--EEeCCCCCEEECCC
Q psy17309 615 --------NCLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGMS-RMCNGE--KYNPVTKTWSQVPD 682 (824)
Q Consensus 615 --------~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~--~yd~~~~~W~~~~~ 682 (824)
...+++++||+.+++|+.++++|. +|..++++.++++|||+||..... ...+++ .||+++++|+.+++
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 124789999999999999999996 688888999999999999964322 234444 56788999999999
Q ss_pred CCCCCcc--------eEEEEECCEEEEEccCCCCc-----------------eeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 683 MYNPRSN--------FAIEVIDDMIFAIGGFNGVT-----------------TIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 683 ~p~~r~~--------~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
||.+|.. +.+++++++|||+||.+... ....+++||+++++|+.++.||.+|..+
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG 337 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce
Confidence 9887642 22567899999999975321 1235789999999999999999999999
Q ss_pred eEEEEcCccceeccccc
Q psy17309 738 SACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~ 754 (824)
+++++++++|++++...
T Consensus 338 ~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 338 VSVSWNNGVLLIGGETA 354 (376)
T ss_pred EEEEeCCEEEEEcCCCC
Confidence 99999999999987543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=309.07 Aligned_cols=254 Identities=18% Similarity=0.248 Sum_probs=205.8
Q ss_pred CCEEEEEccCCCCCCCceEEEEEC--CCCcEEEcccCCCC-CCCceeEEEEECCEEEEEeecCCC------cccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDT--RADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGFDGN------EYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~y 529 (824)
.+.||++||.. .+.++.||+ .+++|.. .+++| .+|..+++++++++|||+||.... ..++++++|
T Consensus 17 ~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~--l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSA----GTSWYKLDLKKPSKGWQK--IADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEcccc----CCeeEEEECCCCCCCceE--CCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 56899999963 256889995 6789999 45666 489999999999999999998532 146889999
Q ss_pred ECCCCceEEec-cCCCCcceEEEE-EECCEEEEEecccCC----------------------------------CCCCeE
Q psy17309 530 NAVTKVWKEIA-PMNFKRCYVSTA-VHQDVIYAMGGYNGQ----------------------------------RRQNSV 573 (824)
Q Consensus 530 d~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~----------------------------------~~~~~~ 573 (824)
|+.+++|+.++ ++|.+|.+++++ +++++||++||.+.. ..++++
T Consensus 91 d~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 91 DPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred ECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 99999999997 456777777766 789999999997532 014789
Q ss_pred EEEeCCCCcEEeecCCCc-ccCceEEEEECCEEEEEcccCCCC-cCCceEEEe--CCCCeEEEcCCCCCCC-------cc
Q psy17309 574 EKYNYTENQWSLIAPMNV-ERSDASATTLQGKIYITGGFNGHN-CLNSCEVYD--PECNQWTLIEPMRHRR-------SG 642 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~~p~~r-------~~ 642 (824)
++|||.+++|+.+++||. +|..+++++++++|||+||..... ....++.|| +++++|+.+++||.+| ..
T Consensus 171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG 250 (346)
T ss_pred EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Confidence 999999999999999996 789999999999999999985432 234565565 5778999999998765 34
Q ss_pred eEEEEECCEEEEEecCCCCC-----------------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccC
Q psy17309 643 VSCIAYHECIYVIGGFNGMS-----------------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF 705 (824)
Q Consensus 643 ~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 705 (824)
|++++++++|||+||.+... ....+++||+++++|+.+++||.+|..+++++++++|||+||.
T Consensus 251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEecc
Confidence 55778899999999975211 1246899999999999999999999999988999999999998
Q ss_pred CCC-ceeeEEEEEE
Q psy17309 706 NGV-TTIYHVECYD 718 (824)
Q Consensus 706 ~~~-~~~~~v~~yd 718 (824)
+.. ..+++|+.|.
T Consensus 331 ~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 331 NSGGKAVTDVYLLS 344 (346)
T ss_pred CCCCCEeeeEEEEE
Confidence 754 4667777664
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=307.84 Aligned_cols=246 Identities=21% Similarity=0.286 Sum_probs=204.6
Q ss_pred CCEEEEEccCCCCC----------CCceEEEEE-CCC-CcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceE
Q psy17309 459 HEILFAIGGWSGGS----------PTDFVETYD-TRA-DRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSC 526 (824)
Q Consensus 459 ~~~l~~~GG~~~~~----------~~~~~~~yd-~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 526 (824)
.+.|+++||.+... ..++++.|+ +.. .+|.. .+++|.+|..++++++++.||++||.++....+++
T Consensus 13 ~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~--~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v 90 (323)
T TIGR03548 13 GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVK--DGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSV 90 (323)
T ss_pred CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEE--cccCCccccceEEEEECCEEEEEcCCCCCCCceeE
Confidence 46899999986532 234677775 332 37988 56788899888889999999999999877778999
Q ss_pred EEEECCCCce----EEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCC-cccCceEEEEE
Q psy17309 527 RCFNAVTKVW----KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN-VERSDASATTL 601 (824)
Q Consensus 527 ~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~ 601 (824)
++||+.+++| ..+++||.+|..|++++++++||++||......++++++||+.+++|+.+++|| .+|..|+++++
T Consensus 91 ~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 170 (323)
T TIGR03548 91 YRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL 170 (323)
T ss_pred EEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE
Confidence 9999999988 788999999999999999999999999865556899999999999999999998 48999999999
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCC---CC--CcceEEE-EECCEEEEEecCCCCC-------------
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR---HR--RSGVSCI-AYHECIYVIGGFNGMS------------- 662 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~--r~~~~~~-~~~~~iyv~GG~~~~~------------- 662 (824)
+++|||+||.++.. ..++++||+++++|+.+++|+ .| +..++++ ..+++|||+||.+...
T Consensus 171 ~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 249 (323)
T TIGR03548 171 QNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD 249 (323)
T ss_pred CCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence 99999999986533 457899999999999998763 23 3344444 4479999999976421
Q ss_pred -------------------ccceEEEEeCCCCCEEECCCCC-CCCcceEEEEECCEEEEEccCCC
Q psy17309 663 -------------------RMCNGEKYNPVTKTWSQVPDMY-NPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 663 -------------------~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
..+++++||+.+++|+.++++| .+|..+++++++++||++||...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecccc
Confidence 1367999999999999999887 68999999999999999999754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=304.32 Aligned_cols=262 Identities=17% Similarity=0.242 Sum_probs=211.3
Q ss_pred CCEEEEEccCCCCCCCceEEEEECC--CCcEEEcccCCCC-CCCceeEEEEECCEEEEEeecCC------CcccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTR--ADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGFDG------NEYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~y 529 (824)
.+.||++||... +.++.||.. +++|..+ +++| .+|..+++++++++|||+||... ....+++++|
T Consensus 38 ~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l--~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 38 NNTVYVGLGSAG----TSWYKLDLNAPSKGWTKI--AAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred CCEEEEEeCCCC----CeEEEEECCCCCCCeEEC--CcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEE
Confidence 578999998632 457889876 4789985 4554 48999999999999999999854 1246889999
Q ss_pred ECCCCceEEecc-CCCCcceEEEEE-ECCEEEEEecccCC----------------------------------CCCCeE
Q psy17309 530 NAVTKVWKEIAP-MNFKRCYVSTAV-HQDVIYAMGGYNGQ----------------------------------RRQNSV 573 (824)
Q Consensus 530 d~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~ 573 (824)
|+.+++|+.+++ +|.++.+|++++ .+++||++||.... ...+++
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999986 466777787776 89999999997531 124789
Q ss_pred EEEeCCCCcEEeecCCCc-ccCceEEEEECCEEEEEcccCCC-CcCCceE--EEeCCCCeEEEcCCCCCCCcc-------
Q psy17309 574 EKYNYTENQWSLIAPMNV-ERSDASATTLQGKIYITGGFNGH-NCLNSCE--VYDPECNQWTLIEPMRHRRSG------- 642 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~-~~~~~v~--~yd~~~~~W~~~~~~p~~r~~------- 642 (824)
++||+.+++|+.++++|. +|.+++++.++++|||+||.... .....++ .||+++++|+.+++||.+|..
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 271 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVA 271 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccc
Confidence 999999999999999996 78899999999999999997432 2233444 467899999999999887642
Q ss_pred -eEEEEECCEEEEEecCCCCC-----------------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEcc
Q psy17309 643 -VSCIAYHECIYVIGGFNGMS-----------------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGG 704 (824)
Q Consensus 643 -~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 704 (824)
+.+++++++|||+||.+... ....+++||+++++|+.+++||.+|..+++++++++|||+||
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGG 351 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcC
Confidence 23567899999999965321 113578999999999999999999999999999999999999
Q ss_pred CCCC-ceeeEEEEEECCCCcEEe
Q psy17309 705 FNGV-TTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 705 ~~~~-~~~~~v~~yd~~~~~W~~ 726 (824)
.... ...+++++|+++++.|+.
T Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 352 ETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCCCCcEeeeEEEEEEcCCEEEE
Confidence 8643 578899999999888765
|
|
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=257.72 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=213.1
Q ss_pred CCEEEEEccCCCCCC-----CceEEEEECCCCcEEEccc-----------CCCCCCCceeEEEEECCEEEEEeecCC-Cc
Q psy17309 459 HEILFAIGGWSGGSP-----TDFVETYDTRADRWVKIDQ-----------VDPMGPRAYHGTAVIGYNIYVIGGFDG-NE 521 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~-----~~~~~~yd~~~~~W~~~~~-----------~~~~~~r~~~~~~~~~~~lyv~GG~~~-~~ 521 (824)
...|+-|||.-+++. .-+++.++..+-+|.+++. +..|..|.+|+++..++++|+.||.+. ..
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 467999999866543 2368999999999999753 223446999999999999999999965 55
Q ss_pred ccceEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEeccc--CCCCCCeEEEEeCCCCcEEee---cCCCccc
Q psy17309 522 YYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYN--GQRRQNSVEKYNYTENQWSLI---APMNVER 593 (824)
Q Consensus 522 ~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~---~~~p~~r 593 (824)
..+.+++|||++++|++.. -.|.+|.+|++|++++.+|+|||+. .+..++++..+|..|.+|+.+ ...|.-|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 6788999999999998643 5688999999999999999999986 345678999999999999987 4567789
Q ss_pred CceEEEEECCEEEEEcccCCC---------CcCCceEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEecCCCC
Q psy17309 594 SDASATTLQGKIYITGGFNGH---------NCLNSCEVYDPECNQWTLIEP---MRHRRSGVSCIAYHECIYVIGGFNGM 661 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~ 661 (824)
..|+++++++.+|||||..+. .+.+.+..+|..|..|...++ .|..|..|++.+++++||+|||+++.
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT 262 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh
Confidence 999999999999999997542 356788899999999998863 57889999999999999999999875
Q ss_pred C--ccceEEEEeCCCCCEEECC---CCCCCCcceEEEEECCEEEEEccCCC
Q psy17309 662 S--RMCNGEKYNPVTKTWSQVP---DMYNPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 662 ~--~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
- ..+++++|||.+..|+.+. .-|.+|..+.+++.++|+|+|||...
T Consensus 263 ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred hhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 3 4789999999999999984 56899999999999999999999764
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=269.19 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=224.4
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccc--eEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEecccC
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYN--SCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYNG 566 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~ 566 (824)
....|.+|..|+++.+++++||+||........ ++|.+|..+..|.... ..|.+|.+|++++++++||+|||.+.
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~ 133 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK 133 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence 345677899999999999999999986555444 4999999999998654 45789999999999999999999883
Q ss_pred -CCCCCeEEEEeCCCCcEEeec---CCCcccCceEEEEECCEEEEEcccCCCC-cCCceEEEeCCCCeEEEcC---CCCC
Q psy17309 567 -QRRQNSVEKYNYTENQWSLIA---PMNVERSDASATTLQGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIE---PMRH 638 (824)
Q Consensus 567 -~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~ 638 (824)
....++++.||+.|++|+.+. ..|.+|.+|++++++++|||+||.+... .++++++||+++.+|.++. +.|.
T Consensus 134 ~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 134 KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 556789999999999998874 5799999999999999999999998755 8999999999999999985 6788
Q ss_pred CCcceEEEEECCEEEEEecCC-CCCccceEEEEeCCCCCEEECC---CCCCCCcceEEEEECCEEEEEccCCCC--ceee
Q psy17309 639 RRSGVSCIAYHECIYVIGGFN-GMSRMCNGEKYNPVTKTWSQVP---DMYNPRSNFAIEVIDDMIFAIGGFNGV--TTIY 712 (824)
Q Consensus 639 ~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~ 712 (824)
||.+|++++++++++++||.+ +...+++++.+|+.+.+|..+. ..|.+|+.|..++.+.+++++||.... ..+.
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~ 293 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLG 293 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccc
Confidence 999999999999999999987 6667999999999999999764 579999999999999999999998764 2688
Q ss_pred EEEEEECCCCcEEecc----CCCCCccceeEEEEcCcccee
Q psy17309 713 HVECYDEKTDEWYEAT----DMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 713 ~v~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~~~~~~~ 749 (824)
+++.||..+..|..+. ..|.+|..++++.+.......
T Consensus 294 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
T KOG0379|consen 294 DLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDG 334 (482)
T ss_pred ccccccccccceeeeeccccccccccccccceeeccCCccc
Confidence 9999999999999983 346788888887776654444
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=247.78 Aligned_cols=137 Identities=25% Similarity=0.329 Sum_probs=117.7
Q ss_pred ccchhhhhhhhhhcccCCCCCCCCCCCCcCC--CcEEEEEccCCCCCCCcceEEEECCCCcEEeeccCC-CCCCcCeEEE
Q psy17309 14 IETFKFLYDLELIAQIDGEVPTPEIARPRVP--HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVD-PMGPRAYHGT 90 (824)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~ 90 (824)
.++.+-+-+|+.+++.+|.+|.| |+..|.. ++.|+||||-++. ..+++++||..+++|...+.-+ .|.+...|+.
T Consensus 10 ~~a~~~~~rWrrV~~~tGPvPrp-RHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gf 87 (830)
T KOG4152|consen 10 EEAEKNVVRWRRVQQSTGPVPRP-RHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGF 87 (830)
T ss_pred chhhhcccceEEEecccCCCCCc-cccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcCCCCCchhhcce
Confidence 35556588999999999999888 6555522 5899999996554 6889999999999999888777 7899999999
Q ss_pred EEECCEEEEEccC-CCCcccceEEEEEccCCceeEe-------cccCCCcceeEEEEECCEEEEEcCcCC
Q psy17309 91 AVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEI-------APMNFKRCYVSTAVHQDVIYAMGGYNG 152 (824)
Q Consensus 91 ~~~~~~~yv~GG~-~~~~~~~~~~~~~~~~~~W~~~-------~~~~~~R~~~~~~~~~~~lyv~GG~~~ 152 (824)
+..+++||+|||+ +-+++.||++.+...-..|+++ +++|.||-+|+-.+++++-|+|||..+
T Consensus 88 vcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaN 157 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAN 157 (830)
T ss_pred EecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccc
Confidence 9999999999995 4567999999999999999998 466788999999999999999999754
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=262.58 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=135.6
Q ss_pred CCCCCceeEEEEECCEEEEEeecCCCc-ccceEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEeccc-CCCC
Q psy17309 495 PMGPRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYN-GQRR 569 (824)
Q Consensus 495 ~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~ 569 (824)
.|.+|.+|++++++++|||+||.+... ..+++|+||+.+.+|.++. +.|.||.+|++++++++++++||.. +...
T Consensus 160 ~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 160 PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence 456899999999999999999997655 8899999999999999875 4578999999999999999999988 7778
Q ss_pred CCeEEEEeCCCCcEEeec---CCCcccCceEEEEECCEEEEEcccCCC--CcCCceEEEeCCCCeEEEcCCC----CCCC
Q psy17309 570 QNSVEKYNYTENQWSLIA---PMNVERSDASATTLQGKIYITGGFNGH--NCLNSCEVYDPECNQWTLIEPM----RHRR 640 (824)
Q Consensus 570 ~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~----p~~r 640 (824)
+++++.+|..+.+|..+. ..|.+|+.|+++..+.+++++||.... ..+.+++.||.++..|+.+... |.+|
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~ 319 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPR 319 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeecccccccccc
Confidence 999999999999999664 589999999999999999999998764 3688999999999999998643 5677
Q ss_pred cceEEEEEC
Q psy17309 641 SGVSCIAYH 649 (824)
Q Consensus 641 ~~~~~~~~~ 649 (824)
..++++...
T Consensus 320 ~~~~~~~~~ 328 (482)
T KOG0379|consen 320 LGHAAELID 328 (482)
T ss_pred ccccceeec
Confidence 777777663
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=234.90 Aligned_cols=236 Identities=20% Similarity=0.375 Sum_probs=197.4
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeec--CCC--cccceEEEEECCCCceEEec--cCCCCcceEEEEEE-CCEEEEEe
Q psy17309 492 QVDPMGPRAYHGTAVI--GYNIYVIGGF--DGN--EYYNSCRCFNAVTKVWKEIA--PMNFKRCYVSTAVH-QDVIYAMG 562 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~--~~~lyv~GG~--~~~--~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~-~~~iyv~G 562 (824)
.-+.|.||.+.++.+. .+.|++|||. ++. ..++++|.||..+++|+.+. +.|.||+.|+++++ .|.+|+||
T Consensus 60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 3456789999988887 6799999995 332 24789999999999999764 56889999998887 48999999
Q ss_pred cccCC------CCCCeEEEEeCCCCcEEee--cCCCcccCceEEEEECCEEEEEcccCCC----CcCCceEEEeCCCCeE
Q psy17309 563 GYNGQ------RRQNSVEKYNYTENQWSLI--APMNVERSDASATTLQGKIYITGGFNGH----NCLNSCEVYDPECNQW 630 (824)
Q Consensus 563 G~~~~------~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~W 630 (824)
|.... ....++|.||..+++|+++ +.-|.+|++|.+++...+|++|||+... .+.|++++||+++-+|
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 96422 1357999999999999998 4579999999999999999999998442 5789999999999999
Q ss_pred EEcCC---CCCCCcceEEEEE-CCEEEEEecCCC---------CCccceEEEEeCCC-----CCEEECCC---CCCCCcc
Q psy17309 631 TLIEP---MRHRRSGVSCIAY-HECIYVIGGFNG---------MSRMCNGEKYNPVT-----KTWSQVPD---MYNPRSN 689 (824)
Q Consensus 631 ~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~---~p~~r~~ 689 (824)
+++.+ -|.||+++.+.+. .|.|||.||+.. ....++++.++|.. -.|+.+.+ -|.||.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 99964 4789999999988 999999999743 22467899999988 67999854 4899999
Q ss_pred eEEEEE-CCEEEEEccCCC---------CceeeEEEEEECCCCcEEec
Q psy17309 690 FAIEVI-DDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 690 ~~~~~~-~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~ 727 (824)
+++++. +++-++|||... +...++++.||...++|...
T Consensus 300 fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 999887 669999999853 22678999999999999754
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=224.22 Aligned_cols=299 Identities=20% Similarity=0.277 Sum_probs=220.9
Q ss_pred CCEEEEEccCCCC-C---CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCC--C----cccceEE
Q psy17309 459 HEILFAIGGWSGG-S---PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDG--N----EYYNSCR 527 (824)
Q Consensus 459 ~~~l~~~GG~~~~-~---~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~--~----~~~~~~~ 527 (824)
++-|++|||.--+ . -.++++.||.+.++|..+..+..|.||+.|.++++ .|.+|+|||.-. + ..+.++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 4579999996332 2 24789999999999999988899999999999999 489999999631 1 2378999
Q ss_pred EEECCCCceEEec--cCCCCcceEEEEEECCEEEEEecccCC----CCCCeEEEEeCCCCcEEeecC---CCcccCceEE
Q psy17309 528 CFNAVTKVWKEIA--PMNFKRCYVSTAVHQDVIYAMGGYNGQ----RRQNSVEKYNYTENQWSLIAP---MNVERSDASA 598 (824)
Q Consensus 528 ~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~ 598 (824)
.||..+++|.++. .-|.+|++|.+++...+|++|||+... ...|++|+||+.|-+|+++.+ -|.||++|+.
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~ 237 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF 237 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence 9999999999875 458899999999999999999998532 357999999999999999843 4899999999
Q ss_pred EEE-CCEEEEEcccCC---------CCcCCceEEEeCCC-----CeEEEcCC---CCCCCcceEEEEE-CCEEEEEecCC
Q psy17309 599 TTL-QGKIYITGGFNG---------HNCLNSCEVYDPEC-----NQWTLIEP---MRHRRSGVSCIAY-HECIYVIGGFN 659 (824)
Q Consensus 599 ~~~-~~~lyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~ 659 (824)
.+. +|.|||.||+.. ....++++.++|++ -.|+.+.+ -|.||+++++++. +++-|.|||..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 999 999999999842 24678999999998 67999865 4789999999887 56999999953
Q ss_pred C---------CCccceEEEEeCCCCCEEECC--CC--C----------------CCCcc------------eEEEEECCE
Q psy17309 660 G---------MSRMCNGEKYNPVTKTWSQVP--DM--Y----------------NPRSN------------FAIEVIDDM 698 (824)
Q Consensus 660 ~---------~~~~~~v~~yd~~~~~W~~~~--~~--p----------------~~r~~------------~~~~~~~~~ 698 (824)
. ....++++.||+..++|+... .. + .++.+ -+++..++.
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~ 397 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDS 397 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccccccccccccccccCcccCCCcccccceecceeeeecCCc
Confidence 3 124789999999999998752 00 0 00111 112233455
Q ss_pred EEEEccCCCCceeeEEEEEECCCCcEEe-----ccCCCCCccceeEEEEcCccceeccccccccchhh
Q psy17309 699 IFAIGGFNGVTTIYHVECYDEKTDEWYE-----ATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLME 761 (824)
Q Consensus 699 i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
|++.-|..+.+.-. |+...+.=+. -.+-+.+|.....++..+.+|++++++..++.+..
T Consensus 398 l~i~v~v~~~g~~~----~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~gGi~ee~d~q~t 461 (521)
T KOG1230|consen 398 LFIYVGVWEPGEAD----YPESEDEASREGDREPDEGEFPRMDDELSVKVGVLYIGGGIFEERDWQPT 461 (521)
T ss_pred eEEEeecCCCCCCC----CcccccccccccCCCCCCCCCccCCCccCcccceEEecCCCcccccccch
Confidence 55522222111000 0001111000 12346678888888888999999988887776544
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=232.49 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=215.1
Q ss_pred cEEEcc--cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe---ccCCCCcceEEEEEECCEEEE
Q psy17309 486 RWVKID--QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI---APMNFKRCYVSTAVHQDVIYA 560 (824)
Q Consensus 486 ~W~~~~--~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv 560 (824)
+|..+. ..+.|.||.+|.++++...|.+|||-+. ...+.++.||..+++|..- .+.|.+...|+.+..+.+||+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 576653 4577889999999999999999999543 4578899999999999853 477888888999999999999
Q ss_pred EecccC-CCCCCeEEEEeCCCCcEEeec-------CCCcccCceEEEEECCEEEEEcccCCC---------CcCCceEEE
Q psy17309 561 MGGYNG-QRRQNSVEKYNYTENQWSLIA-------PMNVERSDASATTLQGKIYITGGFNGH---------NCLNSCEVY 623 (824)
Q Consensus 561 ~GG~~~-~~~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~y 623 (824)
|||... ...+++++-+....-.|+++. +.|.||-+|+...++++-|+|||..+. .++++++..
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 999863 345677766665666677763 468899999999999999999997331 578999998
Q ss_pred eCCCC----eEEEc---CCCCCCCcceEEEEE------CCEEEEEecCCCCCccceEEEEeCCCCCEEECC---CCCCCC
Q psy17309 624 DPECN----QWTLI---EPMRHRRSGVSCIAY------HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP---DMYNPR 687 (824)
Q Consensus 624 d~~~~----~W~~~---~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r 687 (824)
++.-+ .|... ..+|.+|..|.++.+ ..++||+||.++. ++.++|.+|+++.+|.+.. ..|.||
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPR 255 (830)
T ss_pred EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCc
Confidence 87744 38776 478999999999988 3579999997653 5899999999999999873 468899
Q ss_pred cceEEEEECCEEEEEccCCC-----C---------ceeeEEEEEECCCCcEEec-------cCCCCCccceeEEEEcCcc
Q psy17309 688 SNFAIEVIDDMIFAIGGFNG-----V---------TTIYHVECYDEKTDEWYEA-------TDMNIYRSALSACVIMGLP 746 (824)
Q Consensus 688 ~~~~~~~~~~~i~v~GG~~~-----~---------~~~~~v~~yd~~~~~W~~~-------~~~p~~r~~~~~~~~~~~~ 746 (824)
+-|+++.+++|+|||||+-. . ...+++-++++++..|..+ ...|.+|.+|+++.+++++
T Consensus 256 SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 256 SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred ccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence 99999999999999999721 0 1345677899999999876 2378999999999999999
Q ss_pred ceec
Q psy17309 747 NVYD 750 (824)
Q Consensus 747 ~~~~ 750 (824)
|+..
T Consensus 336 YiWS 339 (830)
T KOG4152|consen 336 YIWS 339 (830)
T ss_pred EEEe
Confidence 9873
|
|
| >KOG4350|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-19 Score=181.40 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=182.0
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCH---hhHHHHHHHHhhcChHhH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITE---DNVASLLLATDFFCMSKA 292 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~---~~v~~ll~~a~~~~i~~l 292 (824)
..+|.|+..+++.+.+|+++ .|+|.|+.|..|.+++-..++|+.+|+|||||++.++. +...+.|.+|+.|++.+|
T Consensus 54 ~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~L 133 (620)
T KOG4350|consen 54 TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQL 133 (620)
T ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHH
Confidence 45788999999999999999 89999999999999999999999999999999998754 678999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHH
Q psy17309 293 QDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVW 372 (824)
Q Consensus 293 ~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~ 372 (824)
..+..+||++-+..+|+..++..|..|++++|.+.|..|+-+|-.++. ..+.|..|+.+.|.++|..|... ..|.+||
T Consensus 134 e~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL-~~~sFn~LSk~sL~e~l~RDsFf-ApE~~IF 211 (620)
T KOG4350|consen 134 ETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLL-EDPSFNRLSKDSLKELLARDSFF-APELKIF 211 (620)
T ss_pred HHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhh-cCcchhhhhHHHHHHHHhhhccc-chHHHHH
Confidence 999999999999999999999999999999999999999999999999 78899999999999999988764 5699999
Q ss_pred HHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCcccc
Q psy17309 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQ 418 (824)
Q Consensus 373 ~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~ 418 (824)
.|+.+|-++|+ ....+.|++.||+|+|+...|+..+....++.
T Consensus 212 lAv~~W~~~Ns---ke~~k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 212 LAVRSWHQNNS---KEASKVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred HHHHHHHhcCc---hhhHHHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 99999999998 45667899999999999999999888766553
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=162.63 Aligned_cols=261 Identities=20% Similarity=0.221 Sum_probs=198.8
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCC--CceEEeccCC-CCcceEEEEEECCEEEEEecccCC-
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT--KVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQ- 567 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~- 567 (824)
.++.|.+-.+-+.+.+++.+||-=|..+ .+.+..|... ..|++++..| .+|....+++++++||+|||....
T Consensus 30 lPdlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 30 LPDLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred CCCCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCC
Confidence 4556666666677788899999877444 4567777764 5699999887 578899999999999999998632
Q ss_pred ----CCCCeEEEEeCCCCcEEeec-CCCcccCceEEEEECC-EEEEEcccCCC---------------------------
Q psy17309 568 ----RRQNSVEKYNYTENQWSLIA-PMNVERSDASATTLQG-KIYITGGFNGH--------------------------- 614 (824)
Q Consensus 568 ----~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~lyv~GG~~~~--------------------------- 614 (824)
...+++++|||.+++|+++. ..|....++.++.+++ +||++||++..
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf 185 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYF 185 (381)
T ss_pred CCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHh
Confidence 23689999999999999985 4677888999999987 99999996421
Q ss_pred -------CcCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCC-CccceEEEEeCC--CCCEEECCCC
Q psy17309 615 -------NCLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGM-SRMCNGEKYNPV--TKTWSQVPDM 683 (824)
Q Consensus 615 -------~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~ 683 (824)
.....+..|||.+++|+.+...|. ++++.+.+.-++++.++-|.-.. -+...+.+++.. .-+|..++++
T Consensus 186 ~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~l 265 (381)
T COG3055 186 DKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDL 265 (381)
T ss_pred CCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCC
Confidence 145678899999999999986664 56665555557878888885433 345667777765 4589999888
Q ss_pred CCCCcce-------EEEEECCEEEEEccCCCC-------------------ceeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 684 YNPRSNF-------AIEVIDDMIFAIGGFNGV-------------------TTIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 684 p~~r~~~-------~~~~~~~~i~v~GG~~~~-------------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
|.+...- -.--.++.+.+.||.+-. ...++|+++| ++.|+.++.||.++.+.
T Consensus 266 p~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG 343 (381)
T COG3055 266 PAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYG 343 (381)
T ss_pred CCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccce
Confidence 7654332 112347899999997521 1346788888 89999999999999998
Q ss_pred eEEEEcCccceeccccccccc
Q psy17309 738 SACVIMGLPNVYDYIHQHRDS 758 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.++..++.+++.++....+..
T Consensus 344 ~s~~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 344 VSLSYNNKVLLIGGETSGGKA 364 (381)
T ss_pred EEEecCCcEEEEccccCCCee
Confidence 888999999998777666553
|
|
| >KOG2075|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=170.62 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=181.9
Q ss_pred ccccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHH
Q psy17309 216 PMNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 216 ~~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~ 294 (824)
.+..|.|...+++.+++|.+| +|...++...+|+++++++.+|..+|+|||++++.+..+|++.+|.+|+.|.++.|.+
T Consensus 128 ~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer 207 (521)
T KOG2075|consen 128 SQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALER 207 (521)
T ss_pred ccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 345789999999999999999 7777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCC--HHHHHHHhcCCCcccCChHHH
Q psy17309 295 LCCDFIKRLTTPRNCFGIL-LFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFIS--EQELEEIISSDELNVKSEETV 371 (824)
Q Consensus 295 ~c~~~l~~~l~~~N~~~i~-~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~--~~~l~~ll~~d~L~v~~E~~v 371 (824)
.|.+||++.+-+.|.+..+ +-|.+++-++|.+.|.+-|..+|.+.. +.|.|.+.. .+.++++|+++.|++. |..+
T Consensus 208 ~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al-~~EGf~did~~~dt~~evl~r~~l~~~-e~~l 285 (521)
T KOG2075|consen 208 QCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDAL-TPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRL 285 (521)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhh-CccceeehhhHHHHHHHHHhhcccchh-HHHH
Confidence 9999999999888865555 449999999999999999999999988 788998888 9999999999999987 9999
Q ss_pred HHHHHHHHhcC---------ccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCc
Q psy17309 372 WELIIRWIDYD---------PENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421 (824)
Q Consensus 372 ~~av~~W~~~~---------~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~ 421 (824)
|+|+++|.+.. .+.+.+.+...+..+||++|..+.+...+....+....+
T Consensus 286 feA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d~e 344 (521)
T KOG2075|consen 286 FEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTDRE 344 (521)
T ss_pred HHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccccc
Confidence 99999998643 456678899999999999999998876666655554433
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=145.84 Aligned_cols=233 Identities=19% Similarity=0.237 Sum_probs=171.8
Q ss_pred CCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCC-----CcccceEEEEECCCCceEEeccC-CCCcceEEEEEEC
Q psy17309 482 TRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDG-----NEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVHQ 555 (824)
Q Consensus 482 ~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~~ 555 (824)
-....|..+..- +-.+|....+++++++||+|||... .+..+++|+|||.+++|+.+... |....+++++.++
T Consensus 67 ~~~k~W~~~a~F-pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~ 145 (381)
T COG3055 67 KPGKGWTKIADF-PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLN 145 (381)
T ss_pred cCCCCceEcccC-CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecC
Confidence 345689986333 2347999999999999999999742 23578999999999999988754 6667788888888
Q ss_pred C-EEEEEecccC----------------------------------CCCCCeEEEEeCCCCcEEeecCCC-cccCceEEE
Q psy17309 556 D-VIYAMGGYNG----------------------------------QRRQNSVEKYNYTENQWSLIAPMN-VERSDASAT 599 (824)
Q Consensus 556 ~-~iyv~GG~~~----------------------------------~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~ 599 (824)
+ +||++||.+. ......+..|+|.+++|+.+...| .++++.+.+
T Consensus 146 ~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~ 225 (381)
T COG3055 146 GTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVV 225 (381)
T ss_pred CceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCccee
Confidence 7 9999999631 012467899999999999998776 577776666
Q ss_pred EECCEEEEEcccCC-CCcCCceEEEeCC--CCeEEEcCCCCCCCcce----E---EEEECCEEEEEecCCCC--------
Q psy17309 600 TLQGKIYITGGFNG-HNCLNSCEVYDPE--CNQWTLIEPMRHRRSGV----S---CIAYHECIYVIGGFNGM-------- 661 (824)
Q Consensus 600 ~~~~~lyv~GG~~~-~~~~~~v~~yd~~--~~~W~~~~~~p~~r~~~----~---~~~~~~~iyv~GG~~~~-------- 661 (824)
.-++++.++-|.-. .-+...+.+++.. .-+|..++++|.+...- + .-..++.+.+.||.+-.
T Consensus 226 ~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~ 305 (381)
T COG3055 226 IKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKN 305 (381)
T ss_pred ecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHh
Confidence 66888988888643 2334556666654 55799998777653221 1 22347888899984211
Q ss_pred -----------CccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEE
Q psy17309 662 -----------SRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECY 717 (824)
Q Consensus 662 -----------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~y 717 (824)
....+|+.+| .+.|+.+..||.++....++..+++||++||.+... .+.++...
T Consensus 306 Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 306 GKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred cccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 1245788888 899999999999999888899999999999987554 44444443
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-16 Score=139.62 Aligned_cols=102 Identities=36% Similarity=0.630 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHH
Q psy17309 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388 (824)
Q Consensus 309 ~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~ 388 (824)
|++++.+|..|++.+|.++|.+|+..||.++. ++++|.+||.+++..+|+++.|++.+|.+||+++++|+++++..|.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~-~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVS-KSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHT-TSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHc-cchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHH
Confidence 89999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCChHHHHhhc
Q psy17309 389 HIVSLMKNIRLGLLETEFFREKV 411 (824)
Q Consensus 389 ~~~~ll~~vr~~~~~~~~l~~~~ 411 (824)
++.+|+++|||++++++++.+.+
T Consensus 80 ~~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 80 HLKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp THHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHHhCCcccCCHHHHHHHH
Confidence 99999999999999999987765
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=123.61 Aligned_cols=99 Identities=41% Similarity=0.722 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHH
Q psy17309 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388 (824)
Q Consensus 309 ~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~ 388 (824)
|+.++.+|+.|++..|.+.|.+|+.+||.++. ++++|.+|+.+++..+|++|.|++.+|+.+|+++++|++++...|.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~-~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~- 78 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVA-QSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR- 78 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHh-cCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-
Confidence 67899999999999999999999999999998 5699999999999999999999998999999999999999987666
Q ss_pred HHHHhhhhccCCCCChHHHHh
Q psy17309 389 HIVSLMKNIRLGLLETEFFRE 409 (824)
Q Consensus 389 ~~~~ll~~vr~~~~~~~~l~~ 409 (824)
++..++++|||++++++.+..
T Consensus 79 ~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 79 HLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHHhCCCCCCCHHHHHh
Confidence 899999999999999987654
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-13 Score=142.66 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=167.6
Q ss_pred CCCCCceeEEEEEC--CEEEEEeecCCCcccceEEEEECCCCceEEec---cCCCCcceEEEEEECC--EEEEEecccCC
Q psy17309 495 PMGPRAYHGTAVIG--YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQD--VIYAMGGYNGQ 567 (824)
Q Consensus 495 ~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~--~iyv~GG~~~~ 567 (824)
.|..|.+|.++... +.||+.||.+|.+.+.++|.|+...+.|..+. ..|-.|..|.++..-. ++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 46679999999984 49999999999999999999999999999765 4678899999988754 99999976422
Q ss_pred ------CCCCeEEEEeCCCCcEEeec------CCCcccCceEEEEECCE--EEEEcccCCC---CcCCceEEEeCCCCeE
Q psy17309 568 ------RRQNSVEKYNYTENQWSLIA------PMNVERSDASATTLQGK--IYITGGFNGH---NCLNSCEVYDPECNQW 630 (824)
Q Consensus 568 ------~~~~~~~~yd~~t~~W~~~~------~~p~~r~~~~~~~~~~~--lyv~GG~~~~---~~~~~v~~yd~~~~~W 630 (824)
..-+++|+||..++.|..+. .-|.....|.+++.+++ |||+||..-. ....-++.||.....|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 23468999999999998773 35778899999999877 9999997432 3456789999999999
Q ss_pred EEcCC----------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC-------CCCCCCcceE
Q psy17309 631 TLIEP----------MRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP-------DMYNPRSNFA 691 (824)
Q Consensus 631 ~~~~~----------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~p~~r~~~~ 691 (824)
..+.. ....|.+|.+-.+ +..+|++||......++-...||.....=..+. ++...+....
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~q 496 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQ 496 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhh
Confidence 87741 1234666665444 688999999776666666667765433222111 1111111111
Q ss_pred EEEE---CCEEEEEccCCC------CceeeEEEEEECCCCcEEec
Q psy17309 692 IEVI---DDMIFAIGGFNG------VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 692 ~~~~---~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~ 727 (824)
-+.. ...|.+.-|... .+..++.|+|+..++.|..+
T Consensus 497 Rs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI 541 (723)
T KOG2437|consen 497 RATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCI 541 (723)
T ss_pred hcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhH
Confidence 1112 456777666542 23567899999999999654
|
|
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-13 Score=138.98 Aligned_cols=163 Identities=18% Similarity=0.341 Sum_probs=129.7
Q ss_pred cEEEEEccCCCCCCCcceEEEECCCCcEEeeccCC-CCCCcCeEEEEEECC--EEEEEccCCCC------cccceEEEEE
Q psy17309 46 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVD-PMGPRAYHGTAVIGY--NIYVIGGFDGN------EYYNSCRCFN 116 (824)
Q Consensus 46 ~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~~~~~~--~~yv~GG~~~~------~~~~~~~~~~ 116 (824)
++||+.||+++...+.|.|.|+...+.|..+..-+ .|..|+.|-++..-. ++|+.|-|-+. ...+|+|+||
T Consensus 273 ~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FD 352 (723)
T KOG2437|consen 273 ECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFD 352 (723)
T ss_pred cEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEe
Confidence 59999999999999999999999999999997766 789999999998755 89999996433 3568999999
Q ss_pred ccCCceeEecc------cCCCcceeEEEEECCE--EEEEcCcCC--C-CCCCcEEEEECCCCeEEEecc-----------
Q psy17309 117 AVTKVWKEIAP------MNFKRCYVSTAVHQDV--IYAMGGYNG--Q-RRQNSVEKYNYTENQWSLIAP----------- 174 (824)
Q Consensus 117 ~~~~~W~~~~~------~~~~R~~~~~~~~~~~--lyv~GG~~~--~-~~~~~~~~yd~~~~~W~~~~~----------- 174 (824)
..++.|.-+.- =|..-+.|.|++.+++ ||||||+.- + ..+.-++.||.....|+.++.
T Consensus 353 i~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~ 432 (723)
T KOG2437|consen 353 IDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVED 432 (723)
T ss_pred cCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhH
Confidence 99999998842 2344789999999887 999999843 2 357899999999999988743
Q ss_pred ----ccceee--ccCCeEEEEcccCCceeeceEEEEECCC
Q psy17309 175 ----MNCMIQ--NVTYNIYVIGGFDGNEYYNSCRCFNAVT 208 (824)
Q Consensus 175 ----~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 208 (824)
|++.+. ..++.+|+|||.....-++=..+|++..
T Consensus 433 ~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 433 IQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred HHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecc
Confidence 222111 3357899999997765555555655544
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-13 Score=97.47 Aligned_cols=49 Identities=37% Similarity=0.781 Sum_probs=47.0
Q ss_pred CcCeEEEEEECCEEEEEccCCC-CcccceEEEEEccCCceeEecccCCCc
Q psy17309 84 PRAYHGTAVIGYNIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKR 132 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~~~~R 132 (824)
||.+|++++++++||||||..+ ...++++++||+.|++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6999999999999999999888 789999999999999999999999998
|
|
| >KOG4682|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=129.02 Aligned_cols=151 Identities=14% Similarity=0.230 Sum_probs=136.7
Q ss_pred eecceEEEE-cccccccccceeEEe----eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 228 VHQDVIYAM-GGYNGQRRQNSVEKY----NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 228 ~~~~~~~~~-~g~~~e~~~~~i~l~----~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
..+.+|++| .|.-.|+.++.|.+. .++..++...+.-+|.+++.|..+.+..++.+|.++|++.|.+.|.+-|..
T Consensus 89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie 168 (488)
T KOG4682|consen 89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIE 168 (488)
T ss_pred eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455678888 566677777776654 667788999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCC-hHHHHHHHHHHH
Q psy17309 303 LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKS-EETVWELIIRWI 379 (824)
Q Consensus 303 ~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~-E~~v~~av~~W~ 379 (824)
.|.++|....+..|.+|++..+++.|.+++..||..+- ...-+.+++.+.+..+|.+.+|.+-+ |-++|..+..|+
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~-~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQ-NVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhh-hHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999887 44478889999999999999998765 999999999997
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=89.37 Aligned_cols=48 Identities=33% Similarity=0.591 Sum_probs=45.1
Q ss_pred CcceeEEEEECCEEEEEcCcCC-CCCCCcEEEEECCCCeEEEeccccce
Q psy17309 131 KRCYVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLIAPMNCM 178 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~ 178 (824)
||++|++++++++||||||..+ ....+++++||+++++|+++++|+.+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 7999999999999999999988 67799999999999999999999865
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-11 Score=86.80 Aligned_cols=47 Identities=30% Similarity=0.560 Sum_probs=44.0
Q ss_pred CCEEEEEccCC--CCcccceEEEEEccCCceeEecccCCCcceeEEEEE
Q psy17309 94 GYNIYVIGGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 140 (824)
Q Consensus 94 ~~~~yv~GG~~--~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~ 140 (824)
|++||||||.+ +...+||+|+||+.+++|++++++|.||++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999988 678999999999999999999999999999999975
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=84.91 Aligned_cols=46 Identities=46% Similarity=0.919 Sum_probs=43.2
Q ss_pred CcCeEEEEEECCEEEEEccCCC-CcccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVIGYNIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|++++++++|||+||.++ ...++++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6999999999999999999988 789999999999999999999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=83.93 Aligned_cols=46 Identities=37% Similarity=0.746 Sum_probs=42.6
Q ss_pred CcCeEEEEEECCEEEEEccC---CCCcccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVIGYNIYVIGGF---DGNEYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~---~~~~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|++++++++||||||+ ......+|+++||+.+++|+++++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 69999999999999999999 55678999999999999999998875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >KOG4591|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-10 Score=104.26 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=116.3
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhh--HHHHHHHHhhcChHhHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDN--VASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~--v~~ll~~a~~~~i~~l~~~c 296 (824)
.+.|.+.+++.++......| +.....+..+.+.++++|...+++|||+++++..+. ..++++.|..||++-|++.|
T Consensus 81 i~AHKfVLAARsD~WkfaN~--~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C 158 (280)
T KOG4591|consen 81 IPAHKFVLAARSDFWKFANG--GDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERC 158 (280)
T ss_pred CchhhhhhhhhcchhhhccC--CCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443332211 122345677889999999999999999999987755 68999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCc
Q psy17309 297 CDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDEL 363 (824)
Q Consensus 297 ~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L 363 (824)
++-+-..+.++||+.++.+|+..+...|...|.+.|..+..++- .++|.+++...|-++++...-
T Consensus 159 ~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~--~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 159 EKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG--KADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC--hHHHHhccHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998875 469999999999999977553
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-10 Score=84.46 Aligned_cols=46 Identities=33% Similarity=0.556 Sum_probs=31.7
Q ss_pred CcCeEEEEEE-CCEEEEEccCCCC-cccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVI-GYNIYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~-~~~~yv~GG~~~~-~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|+++.+ +++||||||.+.. ..++|+|+||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999999 5899999998776 69999999999999999998876
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=82.77 Aligned_cols=46 Identities=37% Similarity=0.681 Sum_probs=42.7
Q ss_pred CcceeEEEEECCEEEEEcCcCC-CCCCCcEEEEECCCCeEEEecccc
Q psy17309 131 KRCYVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLIAPMN 176 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 176 (824)
||++|++++++++|||+||.++ ....+++++||+.+++|+.+++|+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6999999999999999999998 667899999999999999999985
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=79.22 Aligned_cols=46 Identities=37% Similarity=0.635 Sum_probs=41.9
Q ss_pred CcceeEEEEECCEEEEEcCc---CCCCCCCcEEEEECCCCeEEEecccc
Q psy17309 131 KRCYVSTAVHQDVIYAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMN 176 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~ 176 (824)
||+.|++++++++||||||+ ......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 69999999999999999999 44566899999999999999999875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=75.55 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=36.2
Q ss_pred CCCCcCeEEEEEECCEEEEEccCC--CCcccceEEEEEccCC
Q psy17309 81 PMGPRAYHGTAVIGYNIYVIGGFD--GNEYYNSCRCFNAVTK 120 (824)
Q Consensus 81 ~p~~R~~h~~~~~~~~~yv~GG~~--~~~~~~~~~~~~~~~~ 120 (824)
+|.||.+|++++++++||||||.+ ....+||+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 479999999999999999999988 4679999999999863
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=80.67 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=31.7
Q ss_pred CcceeEEEEE-CCEEEEEcCcCCC-CCCCcEEEEECCCCeEEEeccccc
Q psy17309 131 KRCYVSTAVH-QDVIYAMGGYNGQ-RRQNSVEKYNYTENQWSLIAPMNC 177 (824)
Q Consensus 131 ~R~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~ 177 (824)
||++|+++.+ +++||||||.+.. ..++++|+||+++++|++++++|+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 7999999999 5899999999886 589999999999999999988873
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=107.09 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=87.0
Q ss_pred CCCcCeEEEEEECCEEEEEccCCCCc-ccceEEEEEccCCceeEe---cccCCCcceeEEEEEC-CEEEEEcCcCCCCCC
Q psy17309 82 MGPRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEI---APMNFKRCYVSTAVHQ-DVIYAMGGYNGQRRQ 156 (824)
Q Consensus 82 p~~R~~h~~~~~~~~~yv~GG~~~~~-~~~~~~~~~~~~~~W~~~---~~~~~~R~~~~~~~~~-~~lyv~GG~~~~~~~ 156 (824)
+.||..|+++.+++++|||||.++.. ..+++++||..|++|... +..|.||.+|++++++ ++|+|+++..+..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 56899999999999999999977664 889999999999999876 5778899999999994 6999999865543
Q ss_pred CcEEEEECCCCe--------EEEeccccceeeccCCeEEEEcccCCc
Q psy17309 157 NSVEKYNYTENQ--------WSLIAPMNCMIQNVTYNIYVIGGFDGN 195 (824)
Q Consensus 157 ~~~~~yd~~~~~--------W~~~~~~~~~~~~~~~~i~v~GG~~~~ 195 (824)
.++|.....|.- =+.+..++.+......+++|+-|-++.
T Consensus 100 ~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGv 146 (398)
T PLN02772 100 DSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGV 146 (398)
T ss_pred cceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCC
Confidence 678888777641 133444444344445678888777664
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=74.69 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=43.1
Q ss_pred CCEEEEEccCC--CCceeeEEEEEECCCCcEEeccCCCCCccceeEEEE
Q psy17309 696 DDMIFAIGGFN--GVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742 (824)
Q Consensus 696 ~~~i~v~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 742 (824)
+++|||+||.+ ....++++|+||+++++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999998 566889999999999999999999999999999863
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-09 Score=75.14 Aligned_cols=47 Identities=32% Similarity=0.590 Sum_probs=43.5
Q ss_pred EEEEEccCCCCcccceEEEEEccCCceeEecccCCCcceeEEEEECC
Q psy17309 96 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142 (824)
Q Consensus 96 ~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~ 142 (824)
+|||+||.++...++++++||+.+++|+++++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998877789999999999999999999999999999998874
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.5e-08 Score=70.60 Aligned_cols=47 Identities=34% Similarity=0.709 Sum_probs=42.6
Q ss_pred EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
+||++||..+...++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678999999999999999999999999999988864
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=66.65 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.7
Q ss_pred cCCCcceeEEEEECCEEEEEcCcCC--CCCCCcEEEEECCCC
Q psy17309 128 MNFKRCYVSTAVHQDVIYAMGGYNG--QRRQNSVEKYNYTEN 167 (824)
Q Consensus 128 ~~~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~ 167 (824)
+|.+|.+|++++++++||||||.++ ...++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999994 566899999999863
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-07 Score=94.87 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=62.8
Q ss_pred CcEEEEEccCCCCC-CCcceEEEECCCCcEEeeccCC-CCCCcCeEEEEEE-CCEEEEEccCCCCcccceEEEEEccC
Q psy17309 45 HEILFAIGGWSGGS-PTDFVETYDTRADRWVKIDQVD-PMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVT 119 (824)
Q Consensus 45 ~~~i~~~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~~~~-~~~~yv~GG~~~~~~~~~~~~~~~~~ 119 (824)
.+.+|||||.+... .+++|++||+.+++|...+..| +|.||.||+++++ +++|+|+++..+.. .+.|.+...|
T Consensus 34 gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--~~~w~l~~~t 109 (398)
T PLN02772 34 GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--DSIWFLEVDT 109 (398)
T ss_pred CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--cceEEEEcCC
Confidence 47999999987765 6899999999999999998888 8999999999999 56899999865553 6788887766
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-06 Score=84.11 Aligned_cols=148 Identities=16% Similarity=0.272 Sum_probs=100.8
Q ss_pred EEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC----CcEEeec-CCCcccCceEEEE
Q psy17309 526 CRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE----NQWSLIA-PMNVERSDASATT 600 (824)
Q Consensus 526 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~~~~~~ 600 (824)
...||+.+++++.+......-+...+..-+|.+.+.||..+ ....+..|+|.+ ..|.+.+ .|..+|...++..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 45799999999987654322222233445899999999754 235677888875 6798775 5999999999998
Q ss_pred E-CCEEEEEcccCCCCcCCceEEEeCCC-----CeEEEcCC----CCCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q psy17309 601 L-QGKIYITGGFNGHNCLNSCEVYDPEC-----NQWTLIEP----MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 601 ~-~~~lyv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 670 (824)
+ +|+++|+||... .+.|.+.+.. ..|..+.. .+..-+-+..+.-+|+||+++.. .-.+|
T Consensus 126 L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i~ 194 (243)
T PF07250_consen 126 LPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSIIY 194 (243)
T ss_pred CCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEEE
Confidence 8 899999999762 3344444322 12322321 22233334444459999999983 45689
Q ss_pred eCCCCCE-EECCCCCCC
Q psy17309 671 NPVTKTW-SQVPDMYNP 686 (824)
Q Consensus 671 d~~~~~W-~~~~~~p~~ 686 (824)
|+.++++ +.++.+|..
T Consensus 195 d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 195 DYKTNTVVRTLPDLPGG 211 (243)
T ss_pred eCCCCeEEeeCCCCCCC
Confidence 9999987 788888753
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-05 Score=75.76 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=116.5
Q ss_pred ceEEEEECCCCceEEeccCCCCcc---e--EEEEEE---CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-c
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRC---Y--VSTAVH---QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-R 593 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r 593 (824)
..+.++||.|++|..+|+.+.++. . .+.... +. +|..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 568999999999999986554211 1 111111 11 555554432222345789999999999988643321 1
Q ss_pred CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCc----ceEEEEECCEEEEEecCCCCCccceEEE
Q psy17309 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS----GVSCIAYHECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 669 (824)
.....+.++|.||-+...........+..||..+.+|...-++|..+. ....+.++|+|.++....... .-++|+
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWv 172 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWV 172 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-cEEEEE
Confidence 122266789999988754321111268999999999995223444332 345677789999887643211 246777
Q ss_pred Ee-CCCCCEEECCCCC---CCCc----ceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 670 YN-PVTKTWSQVPDMY---NPRS----NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 670 yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+ .....|++.-.++ .+.. ....+..+++|++..+... ..-+..||+.++
T Consensus 173 l~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 173 LNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN 230 (230)
T ss_pred ECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence 75 3456799863222 1111 1234455889888765311 113889999875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.3e-07 Score=98.18 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=95.7
Q ss_pred eeeecceEEEEccccc--------ccccceeEEeeecccchhhhheeec-ccceecCH-----hhHHHHHHHHhhcChHh
Q psy17309 226 TAVHQDVIYAMGGYNG--------QRRQNSVEKYNYTENQDKIEEKKLF-ERKLHITE-----DNVASLLLATDFFCMSK 291 (824)
Q Consensus 226 ~~~~~~~~~~~~g~~~--------e~~~~~i~l~~~~~~~~~~ll~~~Y-t~~l~l~~-----~~v~~ll~~a~~~~i~~ 291 (824)
+.+|+-++.+...||. |+..-.+.+--+..+.|+.+|+|+| +.+..+-. +=+-++|..||.|-|.+
T Consensus 723 l~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~ 802 (1267)
T KOG0783|consen 723 LKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE 802 (1267)
T ss_pred cccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 6788888888877764 3333333344445889999999999 55654433 34789999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy17309 292 AQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVA 340 (824)
Q Consensus 292 l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~ 340 (824)
|+..|+.-|...|+..||..++.||.+|++..|+..|.+||..|+..+.
T Consensus 803 Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~L 851 (1267)
T KOG0783|consen 803 LKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFL 851 (1267)
T ss_pred HHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999998766
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.7e-08 Score=86.12 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=69.6
Q ss_pred cCcceeeeeeecceEEEE-ccc-ccccccceeEEeeecccchhhhheeecccceecC-HhhHHHHHHHHhhcChHhHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGY-NGQRRQNSVEKYNYTENQDKIEEKKLFERKLHIT-EDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~-~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~-~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
...|...+++++.+|..+ .+. ..+....+|.+.++++++|+.+++|+|++++.++ .+++.+++.+|+.|+++.|++.
T Consensus 23 ~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~ 102 (111)
T PF00651_consen 23 FYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKA 102 (111)
T ss_dssp EEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHH
T ss_pred EeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHH
Confidence 445555666666666666 222 3455556789999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhhc
Q psy17309 296 CCDFIKRL 303 (824)
Q Consensus 296 c~~~l~~~ 303 (824)
|.++|+++
T Consensus 103 ~~~~l~~~ 110 (111)
T PF00651_consen 103 CEKFLQES 110 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999864
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-05 Score=75.74 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=98.8
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC----CeEEEcC-CCCCCCcceEE
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC----NQWTLIE-PMRHRRSGVSC 645 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~-~~p~~r~~~~~ 645 (824)
.....||+.+++++.+......-+...+..-+|++.+.||..+. ...+-.|+|.+ ..|.+.. .|..+|-.+++
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 34567999999998775443333333333448999999998542 35677888865 5798876 58889988888
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEeCCCC-----CEEECCCC--CCCCcc--eEEEEECCEEEEEccCCCCceeeEEE
Q psy17309 646 IAY-HECIYVIGGFNGMSRMCNGEKYNPVTK-----TWSQVPDM--YNPRSN--FAIEVIDDMIFAIGGFNGVTTIYHVE 715 (824)
Q Consensus 646 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~--p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~v~ 715 (824)
..+ +|+++|+||... ...+.+.+... .|..+... ..+... +....-+|+||+++.. ...
T Consensus 124 ~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~ 192 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSI 192 (243)
T ss_pred eECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcE
Confidence 877 899999999752 23333333221 12222211 112222 2333349999999875 457
Q ss_pred EEECCCCcE-EeccCCCCC
Q psy17309 716 CYDEKTDEW-YEATDMNIY 733 (824)
Q Consensus 716 ~yd~~~~~W-~~~~~~p~~ 733 (824)
+||+.++++ +.++.+|..
T Consensus 193 i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EEeCCCCeEEeeCCCCCCC
Confidence 899999987 788888874
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-07 Score=76.42 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=59.9
Q ss_pred eeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 223 YVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 223 ~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
...+...+.+|..| .+...+..+..+.+.+.++..|+.+++|+|++++.++.+++.+++.+|++|+++.|++.|+
T Consensus 15 ~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 15 KAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 33344444444444 2233333678899999999999999999999999999999999999999999999999984
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=72.94 Aligned_cols=168 Identities=11% Similarity=0.130 Sum_probs=103.8
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCce----EEEEECC-----EEEEEcccCCCCcCCceEEEe
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA----SATTLQG-----KIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~----~~~~~~~-----~lyv~GG~~~~~~~~~v~~yd 624 (824)
++|.|.+..+ ..+.++||.|.+|..+|+.+.++... .+..++. |+..+...........+++|+
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 4666655432 56899999999999998655421111 1111221 455444321112345789999
Q ss_pred CCCCeEEEcCCCCCC-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-CCCCCCCC----cceEEEEECCE
Q psy17309 625 PECNQWTLIEPMRHR-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-VPDMYNPR----SNFAIEVIDDM 698 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r----~~~~~~~~~~~ 698 (824)
..++.|+.+.+.+.. ......+.++|.||-+...........+..||+.+.+|++ ++ +|..+ ....++.++|+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~ 155 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGK 155 (230)
T ss_pred eCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCE
Confidence 999999998743322 1122267789999998754322222379999999999996 43 34332 23567778999
Q ss_pred EEEEccCCCCceeeEEEEEE-CCCCcEEeccCC
Q psy17309 699 IFAIGGFNGVTTIYHVECYD-EKTDEWYEATDM 730 (824)
Q Consensus 699 i~v~GG~~~~~~~~~v~~yd-~~~~~W~~~~~~ 730 (824)
|.++....... .-++|+.+ -....|++.-.+
T Consensus 156 L~~v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 156 LAVLKQKKDTN-NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred EEEEEecCCCC-cEEEEEECCCCCCceeEEEEE
Confidence 98887543221 24788875 446679986333
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.017 Score=63.78 Aligned_cols=249 Identities=14% Similarity=0.188 Sum_probs=141.5
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCC--cEEEcccCC------CCCCCceeEEEEECCEEEEEeecCCCcccceE
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRAD--RWVKIDQVD------PMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSC 526 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 526 (824)
|-...+.+|+... ...+.++|..+. .|..-.... ...++...+.++.++.||+.+. ...+
T Consensus 65 Pvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l 132 (394)
T PRK11138 65 PAVAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQV 132 (394)
T ss_pred cEEECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEE
Confidence 3334566666543 246889998765 476521110 0011223345666888887542 2469
Q ss_pred EEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEE
Q psy17309 527 RCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATT 600 (824)
Q Consensus 527 ~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~ 600 (824)
+++|..+++ |+.-.+- + ...+-++.++.+|+..+ ...++.+|+.+.+ |+.-...|. .+...+-++
T Consensus 133 ~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred EEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 999998875 8753221 1 11223456888887543 2468999998875 876543332 122223345
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCC-----C---cceEEEEECCEEEEEecCCCCCccceEEEE
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHR-----R---SGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 670 (824)
.++.+|+..+ + ..+..+|+++++ |+.-...|.. | ...+-++.++.+|+.+.. ..++++
T Consensus 204 ~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~al 271 (394)
T PRK11138 204 AFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVAL 271 (394)
T ss_pred ECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEE
Confidence 5777777443 2 357888888764 8653222211 0 112334568999986642 468999
Q ss_pred eCCCCC--EEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC--cEEeccCCCCCccceeEEEEcCcc
Q psy17309 671 NPVTKT--WSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD--EWYEATDMNIYRSALSACVIMGLP 746 (824)
Q Consensus 671 d~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~~ 746 (824)
|+.+.+ |+.- ...+ ...+..+++||+.... ..++.+|+++. .|+.-. ...+...+.++.++.+
T Consensus 272 d~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l 338 (394)
T PRK11138 272 DLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYL 338 (394)
T ss_pred ECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEE
Confidence 998764 8753 1111 1345678999997532 26889998876 476421 1122233445567777
Q ss_pred cee
Q psy17309 747 NVY 749 (824)
Q Consensus 747 ~~~ 749 (824)
|+.
T Consensus 339 ~v~ 341 (394)
T PRK11138 339 VVG 341 (394)
T ss_pred EEE
Confidence 664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=65.11 Aligned_cols=231 Identities=13% Similarity=0.086 Sum_probs=133.7
Q ss_pred ceEEEEECCCC--cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--Ccce
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~ 548 (824)
..++++|..+. .|.. ..+. + ...+-++.++.+|+..+ ...++.+|+.+++ |+.-...|. .+..
T Consensus 130 g~l~ald~~tG~~~W~~--~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 130 GQVYALNAEDGEVAWQT--KVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CEEEEEECCCCCCcccc--cCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 46889998765 5865 2111 1 11223445788887543 2469999999877 876433221 1222
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~ 618 (824)
.+-++.++.+|+..+ ...+..+|+.+.+ |+.-...|.. ....+-++.++.+|+.+. + .
T Consensus 199 ~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g 266 (394)
T PRK11138 199 SAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----G 266 (394)
T ss_pred CCCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----C
Confidence 233455777777543 2467888888764 8643222211 111233456899998653 2 4
Q ss_pred ceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 694 (824)
.+.++|+.+++ |+.- .... ...+..+++||+.... ..++++|+.+.+ |+.-. ...+...+.++
T Consensus 267 ~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v 333 (394)
T PRK11138 267 NLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVL 333 (394)
T ss_pred eEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEE
Confidence 68899998765 8753 2111 1245678999997642 468999998764 76421 11223334456
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+... ++ .++++|+++.+ |+. .++......+-++.++.+|+.
T Consensus 334 ~~g~l~v~~~-~G-----~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~ 382 (394)
T PRK11138 334 YNGYLVVGDS-EG-----YLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQ 382 (394)
T ss_pred ECCEEEEEeC-CC-----EEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEE
Confidence 7899987532 22 57888988864 443 222222334456677877765
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=63.72 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=102.9
Q ss_pred EEEEecccC-CCCCCeEEEEeCCCCc--------E---EeecCCCcccCceEEEEE--CC--EEEEEcccCCC-------
Q psy17309 558 IYAMGGYNG-QRRQNSVEKYNYTENQ--------W---SLIAPMNVERSDASATTL--QG--KIYITGGFNGH------- 614 (824)
Q Consensus 558 iyv~GG~~~-~~~~~~~~~yd~~t~~--------W---~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~------- 614 (824)
-++-||.+. ....++++.....+.. . +.+++.|.+|++|++.++ .| -..+|||....
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 344577763 3345666766544322 1 234789999999999877 22 47788996421
Q ss_pred -------CcCCceEEEeCCCCeEEE--cCCCCCCCcceEEEEECCEEEEEecCC--CCCccceEEEEeCCC---CCEEEC
Q psy17309 615 -------NCLNSCEVYDPECNQWTL--IEPMRHRRSGVSCIAYHECIYVIGGFN--GMSRMCNGEKYNPVT---KTWSQV 680 (824)
Q Consensus 615 -------~~~~~v~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~---~~W~~~ 680 (824)
.....|+..|++-+-.+. ++.+....+.|.+.+-++.+|++||.. ...+...+++...+- .-+-..
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 234567778887776553 345566778888888999999999953 233344555443321 111111
Q ss_pred CCCCCCCcceEEEEE---CCEEEEEccCCCCc----e-----e--eEEEEEECCCCcEEeccCCCCCccceeEEE
Q psy17309 681 PDMYNPRSNFAIEVI---DDMIFAIGGFNGVT----T-----I--YHVECYDEKTDEWYEATDMNIYRSALSACV 741 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~----~-----~--~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 741 (824)
.-++...+-.++.+. .++.+|+||+...+ . + +.|.+-..++-.|+. ++...|..++..+
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~ 273 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSM 273 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCcccccccc
Confidence 122333332332222 46788899985432 0 1 224444455566764 3444555544433
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.046 Score=55.48 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=123.0
Q ss_pred eEEEEECCCCc--EEEcccCCCCCCCceeE--EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceE
Q psy17309 476 FVETYDTRADR--WVKIDQVDPMGPRAYHG--TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYV 549 (824)
Q Consensus 476 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~ 549 (824)
.+.++|+.+.+ |.. .. ..+..... .+..++.+|+..+ ...++++|+.+++ |+.-. +.+-...
T Consensus 4 ~l~~~d~~tG~~~W~~--~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA 71 (238)
T ss_dssp EEEEEETTTTEEEEEE--EC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG
T ss_pred EEEEEECCCCCEEEEE--EC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce
Confidence 56788887664 665 11 11122222 3336889998843 3679999998876 66543 2221111
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EE-eecCCCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEe
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WS-LIAPMNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~-~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
.+..++.||+..+ .+.++.+|..+.+ |+ .....+. .+......+.++.+|+... ...+..+|
T Consensus 72 -~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d 138 (238)
T PF13360_consen 72 -PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALD 138 (238)
T ss_dssp -EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEE
T ss_pred -eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEe
Confidence 4777899988863 1379999987764 98 4433232 2334445555777777653 35789999
Q ss_pred CCCCe--EEEcCCCCCCCc--------ceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceE-
Q psy17309 625 PECNQ--WTLIEPMRHRRS--------GVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFA- 691 (824)
Q Consensus 625 ~~~~~--W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~- 691 (824)
+++++ |+.-...+.... ....+..++.+|+..+.. .+..+|..+.+ |+.. +.. ..+
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~---~~~~ 207 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG---IYSL 207 (238)
T ss_dssp TTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS----ECEC
T ss_pred cCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC---ccCC
Confidence 99876 776544433211 123333468888887642 25666998886 8443 211 222
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
....++.||+.. .+ ..+.++|+++++
T Consensus 208 ~~~~~~~l~~~~-~~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 208 PSVDGGTLYVTS-SD-----GRLYALDLKTGK 233 (238)
T ss_dssp EECCCTEEEEEE-TT-----TEEEEEETTTTE
T ss_pred ceeeCCEEEEEe-CC-----CEEEEEECCCCC
Confidence 344577777776 32 278999999874
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.15 Score=56.02 Aligned_cols=230 Identities=15% Similarity=0.211 Sum_probs=127.1
Q ss_pred ceEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~ 550 (824)
..+.++|+.+.+ |.. .... +...+.++.++.+|+.+. ...++++|+.+++ |+.-.. .. ...+
T Consensus 75 g~v~a~d~~tG~~~W~~--~~~~---~~~~~p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~--~~-~~~~ 140 (377)
T TIGR03300 75 GTVVALDAETGKRLWRV--DLDE---RLSGGVGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLS--SE-VLSP 140 (377)
T ss_pred CeEEEEEccCCcEeeee--cCCC---CcccceEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccC--ce-eecC
Confidence 468999987664 765 1111 112233444777776442 2469999998765 874322 11 1122
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
.+..++.+|+..+ ...++.+|+.+.+ |+.-...+. .+...+.++.++.+|+ |..+ ..+..+|+.
T Consensus 141 p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~ 208 (377)
T TIGR03300 141 PLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQ 208 (377)
T ss_pred CEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEcc
Confidence 3445778877543 2568999998764 875433221 1223334556776654 3322 368889987
Q ss_pred CCe--EEEcCCCCCCC--------cceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEE
Q psy17309 627 CNQ--WTLIEPMRHRR--------SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 627 ~~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 694 (824)
+++ |+.-...+... ...+.+..++.+|+.+.. ..+++||+++.+ |+.-. + .....+.
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~--~---~~~~p~~ 277 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA--S---SYQGPAV 277 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc--C---CccCceE
Confidence 764 86432222111 112334568888886542 468999997754 76531 1 1223445
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCC--cEEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTD--EWYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+.... ..++.+|..+. .|+.- .++ .+...+.++.++.+|+.
T Consensus 278 ~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~-~~~-~~~~ssp~i~g~~l~~~ 326 (377)
T TIGR03300 278 DDNRLYVTDAD------GVVVALDRRSGSELWKND-ELK-YRQLTAPAVVGGYLVVG 326 (377)
T ss_pred eCCEEEEECCC------CeEEEEECCCCcEEEccc-ccc-CCccccCEEECCEEEEE
Confidence 68899987531 26888998775 47652 111 11222334456655553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.078 Score=58.21 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=127.2
Q ss_pred ceEEEEECCCC--cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--Ccce
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~ 548 (824)
..++++|+.+. .|..- ... ....+.++.++.+|+..+ ...++++|+.+++ |+.-...+. .+..
T Consensus 115 g~l~ald~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAK--LSS---EVLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CEEEEEECCCCcEeeeec--cCc---eeecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 46889998665 47652 111 111223345777777543 2468999998765 774332221 1222
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCCCccc--------CceEEEEECCEEEEEcccCCCCcCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPMNVER--------SDASATTLQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~ 618 (824)
.+.+..++.+|+ |.. ...+..+|+.+. .|+.-...+... ...+.++.++.+|+.+. ..
T Consensus 184 ~sp~~~~~~v~~-~~~-----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g 251 (377)
T TIGR03300 184 ASPVIADGGVLV-GFA-----GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QG 251 (377)
T ss_pred CCCEEECCEEEE-ECC-----CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CC
Confidence 334556776654 332 246889998776 486432222111 12233456888888543 24
Q ss_pred ceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~ 694 (824)
.+.+||+++++ |+.-. + ...+.+..+++||+... ...++++|..+. .|+.-. +. .+...+.+.
T Consensus 252 ~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i 318 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAV 318 (377)
T ss_pred EEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc-cc-CCccccCEE
Confidence 68899998764 76531 1 12233456899998753 246889998765 476521 11 122223344
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+.. .++ .++++|+++.+ |+. +++......+.++.++++|+.
T Consensus 319 ~g~~l~~~~-~~G-----~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~ 367 (377)
T TIGR03300 319 VGGYLVVGD-FEG-----YLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQ 367 (377)
T ss_pred ECCEEEEEe-CCC-----EEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEE
Confidence 678777653 322 58888887753 332 122222334456777777764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.027 Score=55.80 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred CEEEEEccCCCC-CCCceEEEE--ECCC-CcEEEcc------cCCCCCCCceeEEEEE----CCEEEEEeecCC---C--
Q psy17309 460 EILFAIGGWSGG-SPTDFVETY--DTRA-DRWVKID------QVDPMGPRAYHGTAVI----GYNIYVIGGFDG---N-- 520 (824)
Q Consensus 460 ~~l~~~GG~~~~-~~~~~~~~y--d~~~-~~W~~~~------~~~~~~~r~~~~~~~~----~~~lyv~GG~~~---~-- 520 (824)
+.-++-||...+ +-++.++.. |.+. |+=..+- ....|.+|.+|++.++ ....++|||..- .
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 455667777653 334444444 3333 3322221 4678899999999888 345888999631 1
Q ss_pred ---------cccceEEEEECCCCceE--EeccCCCCcceEEEEEECCEEEEEeccc--CCCCCCeEEEEeCCC--C-cEE
Q psy17309 521 ---------EYYNSCRCFNAVTKVWK--EIAPMNFKRCYVSTAVHQDVIYAMGGYN--GQRRQNSVEKYNYTE--N-QWS 584 (824)
Q Consensus 521 ---------~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t--~-~W~ 584 (824)
.....|+..|+.-+-.+ .+|.+......|.+.+-++.||++||.. .+.....+++....- . -+-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 12345788888876654 5667777888898999999999999975 223334455443221 1 122
Q ss_pred eecCCCcccCceEEEEE---CCEEEEEcccCC
Q psy17309 585 LIAPMNVERSDASATTL---QGKIYITGGFNG 613 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~ 613 (824)
...-++...+-.++.+. .....|+||+..
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence 22234444443333332 467788899854
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.018 Score=61.76 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCcc-----ceEEEE--e--
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRM-----CNGEKY--N-- 671 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~v~~y--d-- 671 (824)
.+.+|+.++.. ..+.+||+++..-...+.++.+.....++.++++||++......... ..++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988654 34789999999988888887777777788889999999985332111 144444 4
Q ss_pred ------CCCCCEEECCCCCCCCc-------ceEEEEE-CCEEEE-EccCCCCceeeEEEEEECCCCcEEeccCCCCC
Q psy17309 672 ------PVTKTWSQVPDMYNPRS-------NFAIEVI-DDMIFA-IGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733 (824)
Q Consensus 672 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 733 (824)
...-.|+.+++.|..+. -.+-+++ +..|+| +-|.. .-.+.||..+.+|+++++-..|
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecC
Confidence 22346888887664433 2344555 677888 44322 2378999999999999654333
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.28 Score=49.67 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=104.4
Q ss_pred ceEEEEECCCCc--eEEeccCCCCcceEE--EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcccCceE
Q psy17309 524 NSCRCFNAVTKV--WKEIAPMNFKRCYVS--TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVERSDAS 597 (824)
Q Consensus 524 ~~~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~ 597 (824)
..+.++|+.+++ |+.-. ..+..... .+..++.+|+..+ ...++++|+.+.+ |+.-. +.+....
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-
Confidence 357888987776 77622 21222223 3447889999843 3689999998775 76543 2222222
Q ss_pred EEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EE-EcCCCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEeC
Q psy17309 598 ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WT-LIEPMRHR--RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 598 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~-~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
....++.+|+..+ .+.+..+|..+++ |+ .....+.. ......+..++.+|+... ...+..+|+
T Consensus 72 ~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 4677899988762 1378999977764 98 44332322 233344455777777764 257899999
Q ss_pred CCCC--EEECCCCCCCC--------cceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc--EEe
Q psy17309 673 VTKT--WSQVPDMYNPR--------SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYE 726 (824)
Q Consensus 673 ~~~~--W~~~~~~p~~r--------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (824)
++.+ |+.-...+... .....+..++.+|+..+... +..+|..+++ |+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKLWSK 199 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEEEEE
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEEEEe
Confidence 8764 77644332211 11233334688888876532 4455999987 844
|
... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.043 Score=58.86 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=83.8
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCC-----ceEEE--e--
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLN-----SCEVY--D-- 624 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~v~~y--d-- 624 (824)
.+.+|+.++.. ..+.+||+.+..-...|.|+.+.....++.++++||++.......... ..|.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899998653 448899999999888888888777777778899999998764321111 44544 3
Q ss_pred ------CCCCeEEEcCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCccceEEEEeCCCCCEEECCC--CCC
Q psy17309 625 ------PECNQWTLIEPMRHRRS-------GVSCIAY-HECIYV-IGGFNGMSRMCNGEKYNPVTKTWSQVPD--MYN 685 (824)
Q Consensus 625 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~p~ 685 (824)
...-.|+.+++.|..+. -.+-+++ +..|+| .-|.. ...+.||..+.+|+.++. ||.
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecCc
Confidence 22347888887665443 2334555 677888 33321 247999999999999974 553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.26 Score=50.36 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-----CC
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-----FK 545 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-----~~ 545 (824)
....++.+++.+.+-..+..+. ..+++.. ++.+|+... .....+|+.+++++.+...+ ..
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccC
Confidence 3457899999988766543322 3455555 688888764 34566799999998777653 22
Q ss_pred cceEEEEEECCEEEEEeccc-CCCCC--CeEEEEeCCCCcEEeec-CCCcccCceEEEEE--CCEEEEEcccCCCCcCCc
Q psy17309 546 RCYVSTAVHQDVIYAMGGYN-GQRRQ--NSVEKYNYTENQWSLIA-PMNVERSDASATTL--QGKIYITGGFNGHNCLNS 619 (824)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~-~~~~~--~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 619 (824)
+.+-.++.-+|.||+-.-.. ..... ..++++++. .+.+.+. .+..+ -+++.. ++.||+.-- ....
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-----~~~~ 157 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-----FNGR 157 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET-----TTTE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc-----ccce
Confidence 33333444478888864221 11111 579999999 6655543 22221 234433 346887532 2356
Q ss_pred eEEEeCCCCe--EEEc---CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 620 CEVYDPECNQ--WTLI---EPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 620 v~~yd~~~~~--W~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
+++||+.... +... ..++.....+-...+ +|.||+..-. ...|.+||++...-..+. +|.+ ..+.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~-~p~~--~~t~ 229 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE-LPVP--RPTN 229 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE--SSS--SEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc-CCCC--CEEE
Confidence 8999886432 3322 223332222333333 6899998431 258999999955554443 4433 3444
Q ss_pred EEE----CCEEEEE
Q psy17309 693 EVI----DDMIFAI 702 (824)
Q Consensus 693 ~~~----~~~i~v~ 702 (824)
+++ .+.|||.
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 444 2456665
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.53 Score=48.06 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+|+..- ....++++|+.+++-..+.... ..+++.. ++.+|+... ....++|+.+.+++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 356666642 2367999999998765543322 3344444 688888765 345677999999988
Q ss_pred ecCCC-----cccCceEEEEECCEEEEEcccCC-CCcC--CceEEEeCCCCeEEEcC-CCCCCCcceEEEEE-CC-EEEE
Q psy17309 586 IAPMN-----VERSDASATTLQGKIYITGGFNG-HNCL--NSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY-HE-CIYV 654 (824)
Q Consensus 586 ~~~~p-----~~r~~~~~~~~~~~lyv~GG~~~-~~~~--~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~iyv 654 (824)
+...+ ..+.+-.++.-+|.||+..-... .... ..++++++. .+.+.+. .+.. .-+.+.- ++ .||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheee
Confidence 86653 23333333344788888632211 1111 569999998 6655553 2221 1233333 44 5777
Q ss_pred EecCCCCCccceEEEEeCCCCC--EEE---CCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 655 IGGFNGMSRMCNGEKYNPVTKT--WSQ---VPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~--W~~---~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.--. ...+++|++.... +.. +..++......-..++ +|.||+..-.. ..|.+|||+-..-..+
T Consensus 151 ~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 151 ADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GRIVVFDPDGKLLREI 220 (246)
T ss_dssp EETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TEEEEEETTSCEEEEE
T ss_pred cccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CEEEEECCCccEEEEE
Confidence 5432 3569999986433 332 2223322222322333 78999983211 2799999996555444
Q ss_pred cCCCCCccceeEEEE
Q psy17309 728 TDMNIYRSALSACVI 742 (824)
Q Consensus 728 ~~~p~~r~~~~~~~~ 742 (824)
.+|.+ ..+.+++
T Consensus 221 -~~p~~--~~t~~~f 232 (246)
T PF08450_consen 221 -ELPVP--RPTNCAF 232 (246)
T ss_dssp -E-SSS--SEEEEEE
T ss_pred -cCCCC--CEEEEEE
Confidence 35544 3344444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.3 Score=44.38 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=85.0
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVST 551 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~ 551 (824)
..+..||+.+++-...-.. ...++ +++.. +..+|+.++. .+.+..||..+.+... ++....+ ..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~-~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~---~~~ 78 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPV-GQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPDP---ELF 78 (300)
T ss_pred CEEEEEECCCCceEEEEEC-CCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCCc---cEE
Confidence 4688889877764332111 11122 23332 4457777653 2568899998877643 2221111 122
Q ss_pred EEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 552 AVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+.. ++.+|+.++. ...+..||+.+.+- +..++......+++.. ++.+++++..++ +.+..||..+.
T Consensus 79 ~~~~~g~~l~~~~~~-----~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 79 ALHPNGKILYIANED-----DNLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred EECCCCCEEEEEcCC-----CCeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 222 3456666542 24688899987542 2222222222233333 666666665332 34566787765
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
+-....... .+..+.+..-+++.+++++.. ...+..||+.+.+
T Consensus 148 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~ 190 (300)
T TIGR03866 148 EIVDNVLVD-QRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRK 190 (300)
T ss_pred eEEEEEEcC-CCccEEEECCCCCEEEEEcCC----CCEEEEEEcCcce
Confidence 432211111 111222223355544444421 2468889988764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.8 Score=49.05 Aligned_cols=185 Identities=14% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
+|+++..|+.. ..+..||..+..- ..+..-..|-..-.....++.+++.|+-+ ..+-.+|..+..- .
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~v--~ 146 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDLSTAYV--Q 146 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEcCCcEE--E
Confidence 89999999854 3588899544211 11111111211122344688999998743 2334445555442 2
Q ss_pred cCCCccc---CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 587 APMNVER---SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 587 ~~~p~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
..+...- ...++...++.|++.|||++ .+-.||..+. .|. -.+.....--.++.+ ++.|...||
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v--~elnhg~pVe~vl~lpsgs~iasAgG--- 216 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRV--VELNHGCPVESVLALPSGSLIASAGG--- 216 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCcee--EEecCCCceeeEEEcCCCCEEEEcCC---
Confidence 2222111 11123344789999999986 5667887776 343 222221111123333 345555565
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcce--EEE--EE--CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCC
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AIE--VI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 730 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~--~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (824)
+.+-++|+.+.. .++..+.+| +++ .+ ++.=++.||.++ .+-+|| +..|+.+-.+
T Consensus 217 ----n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~ 276 (487)
T KOG0310|consen 217 ----NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSW 276 (487)
T ss_pred ----CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEee
Confidence 678888876442 122222211 121 12 557778888876 588898 4457766433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.91 E-value=4.2 Score=46.28 Aligned_cols=254 Identities=14% Similarity=0.154 Sum_probs=124.1
Q ss_pred ceEEEEECCCC--cEEEcccCCCCC-C--CceeEEEEECCEEEEEeecCCC----cccceEEEEECCCCc--eEEeccCC
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMG-P--RAYHGTAVIGYNIYVIGGFDGN----EYYNSCRCFNAVTKV--WKEIAPMN 543 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~-~--r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~yd~~~~~--W~~~~~~~ 543 (824)
..+.++|..+. .|.. ...... . ....+.++.++.+|+ |..... .....++++|..+++ |+.-...+
T Consensus 120 g~v~AlD~~TG~~~W~~--~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~ 196 (488)
T cd00216 120 GRLVALDAETGKQVWKF--GNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEP 196 (488)
T ss_pred CeEEEEECCCCCEeeee--cCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCC
Confidence 46888998765 4765 221110 0 012233444666654 432211 124578999998876 87422111
Q ss_pred ----CCcc--------------eEEEEE--ECCEEEEEeccc------------CCCCCCeEEEEeCCCCc--EEeecCC
Q psy17309 544 ----FKRC--------------YVSTAV--HQDVIYAMGGYN------------GQRRQNSVEKYNYTENQ--WSLIAPM 589 (824)
Q Consensus 544 ----~~r~--------------~~~~~~--~~~~iyv~GG~~------------~~~~~~~~~~yd~~t~~--W~~~~~~ 589 (824)
.+.. ..+.+. .++.||+-.|.. .....+.+..+|..+.+ |+.-...
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~ 276 (488)
T cd00216 197 DPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP 276 (488)
T ss_pred CcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence 1100 011222 256777764421 11123579999998865 8753221
Q ss_pred Cc-----ccCceEEEE---ECCE---EEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEe
Q psy17309 590 NV-----ERSDASATT---LQGK---IYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 590 p~-----~r~~~~~~~---~~~~---lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~G 656 (824)
+. ......+.. .++. +.++|..+ ..++.+|.++++ |+.-.. ...++.-.+.+|+-.
T Consensus 277 ~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~ 345 (488)
T cd00216 277 HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGA 345 (488)
T ss_pred CCCcccccCCCCeEEeccccCCCeeEEEEEECCC-----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEcc
Confidence 11 111111111 2232 33444433 358899998876 765321 011112226666643
Q ss_pred cCCC------------CCccceEEEEeCCCCC--EEECCCC-------CCCCcceEEEEECCEEEEEccCCCCceeeEEE
Q psy17309 657 GFNG------------MSRMCNGEKYNPVTKT--WSQVPDM-------YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVE 715 (824)
Q Consensus 657 G~~~------------~~~~~~v~~yd~~~~~--W~~~~~~-------p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 715 (824)
.... ......+..+|..+.+ |+.-... ..+......+..++.||+ |..++ .++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~dG-----~l~ 419 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAADG-----YFR 419 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECCCC-----eEE
Confidence 2110 1123468889987654 8764320 012222334445555555 44433 688
Q ss_pred EEECCCC--cEEeccCCCCCccceeE-EEEcCccceec
Q psy17309 716 CYDEKTD--EWYEATDMNIYRSALSA-CVIMGLPNVYD 750 (824)
Q Consensus 716 ~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~~~~~~ 750 (824)
.+|.++. .|+. +++.+....-+ ...++++|+..
T Consensus 420 ald~~tG~~lW~~--~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 420 AFDATTGKELWKF--RTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEECCCCceeeEE--ECCCCceEcCEEEEeCCEEEEEE
Confidence 9998886 4664 34444332222 35588888864
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.11 Score=53.46 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCC-cCCceEEEeCCCCeEEEcCC-----CCCCCc
Q psy17309 569 RQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIEP-----MRHRRS 641 (824)
Q Consensus 569 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-----~p~~r~ 641 (824)
....+..||+.+.+|..+..--.+. -.++... +++||+.|-..-.. ....+-.||.++.+|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4688999999999999876542221 1223333 67888777554333 45678899999999998875 344432
Q ss_pred ceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 642 GVSCIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 642 ~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
.......+ +.+++.|.. .....-+..|| ..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence 22222223 567777765 22234567775 679999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.4 Score=46.08 Aligned_cols=184 Identities=14% Similarity=0.060 Sum_probs=90.0
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEE-ECC-EEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAV-HQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
.+|+.++.+ ..+.+||+.+++-...-... .++ +++. -++ .+|+.++. .+.+..||+.+.+....
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGT 68 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEe
Confidence 466676643 46888998877643222211 122 2222 233 57777653 35688999988776432
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecCCCCCc
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIA-YHECIYVIGGFNGMSR 663 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 663 (824)
-+... ....++.. ++.+|+.++.+ ..+..||+.+.+- +..++......+++. -++.+++++..+.
T Consensus 69 ~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--- 136 (300)
T TIGR03866 69 LPSGP--DPELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT--- 136 (300)
T ss_pred ccCCC--CccEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC---
Confidence 11111 11222222 34566665432 4688899887542 222221111122332 3677777665321
Q ss_pred cceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 664 MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+-....... .+..+....-+++.+++++... ..+.+||.++.+.
T Consensus 137 -~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 -NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred -CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 24566787654432211111 1111222233555444444322 2588899887643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=52.12 Aligned_cols=109 Identities=10% Similarity=0.190 Sum_probs=70.1
Q ss_pred ccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCC-CCCeEEEEeCCCCcEEeecC-----CCcccC
Q psy17309 522 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQR-RQNSVEKYNYTENQWSLIAP-----MNVERS 594 (824)
Q Consensus 522 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~-----~p~~r~ 594 (824)
....+..||+.+.+|..+..--... -.++... +++||+.|-..-.. ....+-.||..+++|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4678999999999999877542222 2334444 67888877654332 45678899999999988765 344432
Q ss_pred ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC
Q psy17309 595 DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 635 (824)
Q Consensus 595 ~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 635 (824)
....... .+.+++.|... .-...+..|| ..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 2222222 34677777652 2234566775 668998875
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.68 Score=46.96 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=107.5
Q ss_pred CCEEEEEeecCCCcccceEEEEEC-----CCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNA-----VTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 582 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 582 (824)
++++|++.|..+. .++.|.- ..++....-.+|.+-.+.+.++++|.+|---. .++.+.+||+.+++
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 3678888886543 4444432 33444444556666667778889998888643 35889999999987
Q ss_pred EEeecCCCcccCc------------eEEEEECCEEEEEcccCCCCcCCceEEEeCCC----CeEEEcCCCCCCCcceEEE
Q psy17309 583 WSLIAPMNVERSD------------ASATTLQGKIYITGGFNGHNCLNSCEVYDPEC----NQWTLIEPMRHRRSGVSCI 646 (824)
Q Consensus 583 W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~ 646 (824)
-..-..+|.+... .-.++=++-|+|+=........-.+-+.||.+ .+|.. +.+.+.. ..+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~-~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSA-GNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhh-ccee
Confidence 6533334333222 23333345566664433222223455667765 35754 3333333 3355
Q ss_pred EECCEEEEEecCCCCCccceEEEEeCCCCCEEECC-CCCCCCcceEEEEE---CCEEEEEc
Q psy17309 647 AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP-DMYNPRSNFAIEVI---DDMIFAIG 703 (824)
Q Consensus 647 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~i~v~G 703 (824)
.+-|.||++...+... ..-.+.||+.+++=..+. +++.+-...++... +.+||+.-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 6679999998765433 334579999987765443 23334444555554 67888873
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.2 Score=43.49 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCcE--Eee----cCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEE
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQW--SLI----APMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~y 623 (824)
++...+.+|+|-| +.+|+++...... ..+ +.+|.. ...+.... ++++|+|-| +..++|
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg-------~~yw~~ 76 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKG-------DKYWVY 76 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECC-------CEEEEE
Confidence 3445699999987 5678887652211 112 223321 12222222 389999977 456777
Q ss_pred eCCCCeEE---EcC--CCCC--CCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEE-----C----CCCCCC
Q psy17309 624 DPECNQWT---LIE--PMRH--RRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-----V----PDMYNP 686 (824)
Q Consensus 624 d~~~~~W~---~~~--~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 686 (824)
|..+..+. .+. .+|. ....++...- ++++|++.| +..++||...++-.. + ..+|..
T Consensus 77 ~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 77 TGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred cCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 75542211 111 1121 1122222222 689999998 577888876554321 1 122221
Q ss_pred CcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..++...-++++|++-|. ..++||..+.+
T Consensus 150 -idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 150 -VDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred -cceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 222232334899999774 78999988765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=4.5 Score=46.00 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC----Cc-ceEEEEEEC-CEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF----KR-CYVSTAVHQ-DVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 574 (824)
+-++.++.+|+.... ..++++|..+++ |+.-...+. +. ....++..+ +.||+... ...+.
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345668999986542 568999998765 875332220 00 111234456 78887532 25789
Q ss_pred EEeCCCCc--EEeecCCCc---ccCceEEEEECCEEEEEcccCCC----CcCCceEEEeCCCCe--EEEc
Q psy17309 575 KYNYTENQ--WSLIAPMNV---ERSDASATTLQGKIYITGGFNGH----NCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 575 ~yd~~t~~--W~~~~~~p~---~r~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~--W~~~ 633 (824)
.+|..|.+ |+.-..-+. .....+.++.++.+|+ |..+.. .....++++|.+|++ |+.-
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 99988754 875432211 0012233455676665 432211 123578999998765 8753
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.2 Score=43.67 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=78.3
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCce--EEec----cCCCCcceEEEEEEC-CEEEEEecccCCCCCCeEEEE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVW--KEIA----PMNFKRCYVSTAVHQ-DVIYAMGGYNGQRRQNSVEKY 576 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~y 576 (824)
+....+.+|+|-| +.+|+++...... ..+. .+|. ....+..... +++|+|-| +..|+|
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~ 76 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVY 76 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEE
Confidence 4444688999987 5678887652211 1121 1221 2222333223 89999987 578888
Q ss_pred eCCCCcEE---eecCCCccc--CceEEE-EE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc---------CCCCCC
Q psy17309 577 NYTENQWS---LIAPMNVER--SDASAT-TL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI---------EPMRHR 639 (824)
Q Consensus 577 d~~t~~W~---~~~~~p~~r--~~~~~~-~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~---------~~~p~~ 639 (824)
+..+..+. .+...+.+. ....++ .. ++++|++.| +..++||..+++...- ..+|..
T Consensus 77 ~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 77 TGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred cCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 87653221 111111111 212222 22 689999988 4567787655543211 122221
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 640 RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 640 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
. -++... ++++|++-| +..++||..+.+
T Consensus 150 -i-daa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 150 -V-DAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred -c-ceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2 233334 489999998 588999988765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.11 E-value=7.3 Score=44.62 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=69.1
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++.++.||+... ...++++|..+++ |+.-...+.. ....++++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 3556899998654 2468999998865 8754432211 111234667888887432 2468
Q ss_pred EEEeCCCCc--EEeec-CCCcc-cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 574 EKYNYTENQ--WSLIA-PMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 574 ~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
..+|..|.+ |+.-. ..... ....+-++.+++||+-...........+..||.++++ |+.-
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 999998875 76532 22211 1122334568888774322111234578899998875 7643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.6 Score=46.49 Aligned_cols=183 Identities=12% Similarity=0.160 Sum_probs=105.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE--EECCE-EEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA--VHQDV-IYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
.-.+.+++|.++. -.++..|-.+|. .+.++...+.-...+ .-+|. ..+++|. -.-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 5678888987653 345556666655 344433222221111 12444 7777774 355889999999888
Q ss_pred eecCCCc--ccCce-EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCC
Q psy17309 585 LIAPMNV--ERSDA-SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGM 661 (824)
Q Consensus 585 ~~~~~p~--~r~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 661 (824)
++.++-. .+.-+ -.+..++.+.++-|..+ .++.....|+.|..--.++......+....+..||+.||.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 8765421 12222 23344566777777553 5677777888885433444333333334445678888885
Q ss_pred CccceEEEEeCCCCC----EEECCCCCCCCcceE-EEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 662 SRMCNGEKYNPVTKT----WSQVPDMYNPRSNFA-IEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..|+++|+..+. |..-+.. .+-+ +...++..+.+|-..+ -|-+||-+
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~G-----iVNIYd~~ 417 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSG-----IVNIYDGN 417 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcc-----eEEEeccc
Confidence 489999998763 5443332 2222 3345777666664333 35677744
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.19 Score=50.62 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=97.8
Q ss_pred EEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 550 STAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+... .+|.+|.--|.-+. +.+.++|+.+++-....++|..-.+=+++.++++||..-=. .....+||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 3455 57899998886553 67899999999987778899888889999999999998432 35678999876
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE------EEEECCEEEEE
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA------IEVIDDMIFAI 702 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~------~~~~~~~i~v~ 702 (824)
.+.+...+.+..+.+.+..+..|++.-|. +.++..||++-+=.. .+.....+.. +-.++|+||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEE
Confidence 45666666677889999888899998884 689999997533211 1111111111 12235555442
Q ss_pred ccCCCCceeeEEEEEECCCCcE
Q psy17309 703 GGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (824)
--..+.|.+.||+++.=
T Consensus 191 -----VW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 191 -----VWQTDRIVRIDPETGKV 207 (264)
T ss_dssp -----ETTSSEEEEEETTT-BE
T ss_pred -----eCCCCeEEEEeCCCCeE
Confidence 11346788999999853
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.019 Score=58.80 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=62.6
Q ss_pred ccceeEEe-eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCH
Q psy17309 244 RQNSVEKY-NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCK 322 (824)
Q Consensus 244 ~~~~i~l~-~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~ 322 (824)
+..+|+|. ..+-.+|+=|++|+....-.++.+||..||..|++|||+.|++.|..|+.+
T Consensus 43 ~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~-------------------- 102 (317)
T PF11822_consen 43 RWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHD-------------------- 102 (317)
T ss_pred cCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHH--------------------
Confidence 33456665 456788999999999988899999999999999999999988888776654
Q ss_pred HHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHH
Q psy17309 323 KLEEWTRKYILRNFVDVARESEEIVFISEQELEEI 357 (824)
Q Consensus 323 ~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~l 357 (824)
|+.+|....-++..|+.+.+..|
T Consensus 103 ------------~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 103 ------------HMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred ------------hHHHHHcCCCCcccCCHHHHHHH
Confidence 45555555556666776666665
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.83 E-value=5.2 Score=40.62 Aligned_cols=224 Identities=10% Similarity=0.087 Sum_probs=100.1
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
.++++|+. ...+..||..+.+-... .... ......+... ++..+++|+.+ ..+..||..+++....
T Consensus 22 ~~l~~~~~-----~g~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 22 KLLATGSG-----DGTIKVWDLETGELLRT--LKGH-TGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECVRT 88 (289)
T ss_pred CEEEEeec-----CcEEEEEEeeCCCcEEE--EecC-CcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccceEE
Confidence 44555543 34577777766542211 0000 0111122223 44466666643 4688888887532211
Q ss_pred ccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC-CEEEEEcccCCCCcC
Q psy17309 540 APMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ-GKIYITGGFNGHNCL 617 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 617 (824)
-... ...-.++... ++.+++.|+. ...+..||+.+.+-...-. .....-.++.... +.+++.|+.+
T Consensus 89 ~~~~-~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~----- 156 (289)
T cd00200 89 LTGH-TSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD----- 156 (289)
T ss_pred Eecc-CCcEEEEEEcCCCCEEEEecC-----CCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC-----
Confidence 1111 1112223333 3466666652 2568889987544322111 1111122233333 4555444323
Q ss_pred CceEEEeCCCCeEEEcCCCCCCC-cceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE
Q psy17309 618 NSCEVYDPECNQWTLIEPMRHRR-SGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI 695 (824)
Q Consensus 618 ~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (824)
..+..||..+.+- +..+.... .-.++... +++.+++++.+ ..+..||..+.+....-. .....-.++...
T Consensus 157 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~ 228 (289)
T cd00200 157 GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR-GHENGVNSVAFS 228 (289)
T ss_pred CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecchh-hcCCceEEEEEc
Confidence 4688888865431 11111111 11122222 34455555542 468889987643322210 111112223333
Q ss_pred -CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 696 -DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 696 -~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
++.+++.|+.++ .+.+||..+.
T Consensus 229 ~~~~~~~~~~~~~-----~i~i~~~~~~ 251 (289)
T cd00200 229 PDGYLLASGSEDG-----TIRVWDLRTG 251 (289)
T ss_pred CCCcEEEEEcCCC-----cEEEEEcCCc
Confidence 356666665333 5788887753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=9.1 Score=42.98 Aligned_cols=191 Identities=9% Similarity=-0.075 Sum_probs=97.4
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....-+.+...+.+-. .....-+|+-.++..... ....++.+|+.+.+-+.+...+..-... ...-+
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPD 272 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAP-RFSPD 272 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCe-eECCC
Confidence 4567777766544443332221111 111222443333322211 1357999999988877776554322221 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ...++.+|..+++.+.+..-...-.. ....-++ .|++.....+ ...++.+|+.+.+++.+
T Consensus 273 G~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 273 GKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEE
Confidence 4 4655433222 25789999999888777542211111 1122244 4554432222 25799999999988877
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
..-. .........-++ .|++.+ .... ...++++|++++..+.+.
T Consensus 346 t~~g-~~~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 346 TFEG-EQNLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred ecCC-CCCcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEcc
Confidence 4211 111111222244 555543 3222 237899999998887764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=8 Score=41.45 Aligned_cols=214 Identities=10% Similarity=0.101 Sum_probs=105.5
Q ss_pred CCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccC-CCCcceEEEEEE-CCEEEE
Q psy17309 483 RADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVH-QDVIYA 560 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~~~iyv 560 (824)
.-.+|.++............++...++..++.|.. ..+++=+-.-.+|+.+... ..+.....+..+ ++.+++
T Consensus 74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~ 147 (334)
T PRK13684 74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEM 147 (334)
T ss_pred CCCCceECccCCcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCccee
Confidence 44679885332111112223344445566666521 2244433334689987532 122222334344 345666
Q ss_pred EecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEE-EeCCCCeEEEcCCCCCC
Q psy17309 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEV-YDPECNQWTLIEPMRHR 639 (824)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~ 639 (824)
.|.. ..+++=+-.-.+|+.+..... -..+.+....+..+++.|..+ .++. .|....+|+.+.. +..
T Consensus 148 ~g~~------G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~ 214 (334)
T PRK13684 148 ATNV------GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSS 214 (334)
T ss_pred eecc------ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCc
Confidence 6542 345554546679998754332 233444444444444444332 2222 2444567998854 333
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEE--eCCCCCEEECCCC-CCC-CcceEEEEE-CCEEEEEccCCCCceeeE
Q psy17309 640 RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKY--NPVTKTWSQVPDM-YNP-RSNFAIEVI-DDMIFAIGGFNGVTTIYH 713 (824)
Q Consensus 640 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~-p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~ 713 (824)
+.-.+++.. +++++++|... ...+ +-.-.+|+.+... ... ...++++.. ++.++++|... .
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G------~ 281 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG------T 281 (334)
T ss_pred ccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC------e
Confidence 444444443 68888887531 2234 2234589976421 111 112333333 66788887542 2
Q ss_pred EEEEECCCCcEEecc
Q psy17309 714 VECYDEKTDEWYEAT 728 (824)
Q Consensus 714 v~~yd~~~~~W~~~~ 728 (824)
+..-...-.+|+.+.
T Consensus 282 v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 282 LLVSKDGGKTWEKDP 296 (334)
T ss_pred EEEeCCCCCCCeECC
Confidence 333333456899874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=9.4 Score=42.62 Aligned_cols=147 Identities=14% Similarity=0.020 Sum_probs=80.5
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH 649 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (824)
..++++|+.+++-+.+...+..-.. ....-+| +|++....++ ..+++.+|..+...+.+..-+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 5799999999887777654422111 1112244 4544322222 257899999999888775432211111 12224
Q ss_pred C-EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 650 E-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 650 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+ +|++.....+ ...++.+|..+.+++.+.... .........- ++.|++....++ ...++++|+.++..+.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 4 5555432221 357899999888887764221 1111111222 445555543222 23689999999888877
Q ss_pred cC
Q psy17309 728 TD 729 (824)
Q Consensus 728 ~~ 729 (824)
..
T Consensus 371 t~ 372 (430)
T PRK00178 371 TD 372 (430)
T ss_pred cC
Confidence 43
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.68 Score=46.73 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=97.3
Q ss_pred EEEE-ECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 503 GTAV-IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 503 ~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
+... .++.+|..-|.-+. +.+..+|+.+++-....++|..-.+=+++.++++||..-= .....++||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc-
Confidence 4555 47899998887553 7889999999998877788877777889999999999842 235789999976
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC----CCCCCCcceEEEEECCEEEEEe
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE----PMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~----~~p~~r~~~~~~~~~~~iyv~G 656 (824)
.+.+...+.+..+-+++.-+..|++.-| .+.++..||++-+=.. +. ..|..+ ---.-.++|.||.==
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~G~IyANV 191 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYINGKIYANV 191 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccceEEEEEEEECCEECCC-cEeEEEEcCEEEEEe
Confidence 4566666666788888877888888776 3678899998643221 11 111111 111233466665421
Q ss_pred cCCCCCccceEEEEeCCCCC
Q psy17309 657 GFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~ 676 (824)
-..+.|.+-||+++.
T Consensus 192 -----W~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 192 -----WQTDRIVRIDPETGK 206 (264)
T ss_dssp -----TTSSEEEEEETTT-B
T ss_pred -----CCCCeEEEEeCCCCe
Confidence 125788999999986
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.2 Score=45.49 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=86.0
Q ss_pred CEEEEEeccc--CC--CCC-CeEEEEeCCCC-----cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeC
Q psy17309 556 DVIYAMGGYN--GQ--RRQ-NSVEKYNYTEN-----QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 556 ~~iyv~GG~~--~~--~~~-~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
...+++|..- +. ... ..+..|+.... +++.+......-.-.+++.++++|.+.-| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 3566666432 11 122 67889998885 66666555554446677778999777655 57888888
Q ss_pred CCCe-EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEc
Q psy17309 626 ECNQ-WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIG 703 (824)
Q Consensus 626 ~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G 703 (824)
..++ +...+.+..+-...+..+.++.|++---.. .-.+..|+.+..+-..++.-+.++...++..+ ++..++++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 8888 888876666556666677788666543221 13455778766667777665567777777777 66544443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=10 Score=42.39 Aligned_cols=146 Identities=16% Similarity=0.075 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE
Q psy17309 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY 648 (824)
Q Consensus 570 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 648 (824)
...++++|..+++-+.+...+.... .....-+| +|++....++ ..+++.+|+.++.-+.+..-+...... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 3579999999888877766543221 11222244 5554433222 257999999988776664322111111 2222
Q ss_pred CCE-EEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEE-EE-CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 649 HEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIE-VI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 649 ~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
+++ |+......+ ...++.+|..+.+.+.+..- ........ .- +.+|++..+.++ ...++++|+.++..+
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 454 444432221 25789999988888776421 11221222 22 445555544221 237899999998888
Q ss_pred ecc
Q psy17309 726 EAT 728 (824)
Q Consensus 726 ~~~ 728 (824)
.+.
T Consensus 374 ~Lt 376 (433)
T PRK04922 374 TLT 376 (433)
T ss_pred ECC
Confidence 764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.11 E-value=6.5 Score=39.87 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=83.3
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
+.++++|+.+ ..+..||..+++-........... ..+... ++..+++|+. ...+.+||..+.+...
T Consensus 21 ~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~-- 87 (289)
T cd00200 21 GKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSS-----DKTIRLWDLETGECVR-- 87 (289)
T ss_pred CCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceE--
Confidence 3455566532 457778877654211111111111 122222 4446666664 2568888887753211
Q ss_pred CCCccc-CceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC-CEEEEEecCCCCCcc
Q psy17309 588 PMNVER-SDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH-ECIYVIGGFNGMSRM 664 (824)
Q Consensus 588 ~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~ 664 (824)
.+.... .-.++... ++.+++.|+.+ ..+..||+.+.+-...-. .....-.++.... +.+++.|+.+
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~----- 156 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD----- 156 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC-----
Confidence 111111 11222222 34666666533 468889987554322211 1111112223333 4555554422
Q ss_pred ceEEEEeCCCCCEEECCCCCCCC-cceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 665 CNGEKYNPVTKTWSQVPDMYNPR-SNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+- +..+.... .-.++... +++.+++|+.++ .+.+||..+.+-
T Consensus 157 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~ 211 (289)
T cd00200 157 GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDG-----TIKLWDLSTGKC 211 (289)
T ss_pred CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCC-----cEEEEECCCCce
Confidence 4678888864321 11111111 11122222 444555655433 578888876433
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=94.02 E-value=5.9 Score=40.03 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=101.1
Q ss_pred CEEEEEeecCCCcccceEEEEE----CCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFN----AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd----~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
+++|++.+.. ...+.++.|. ....++...-.+|.+-.+.+.++++|.+|.--. ....+.+||+.+++-.
T Consensus 35 ~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~ 107 (255)
T smart00284 35 SLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQ 107 (255)
T ss_pred ceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEE
Confidence 6778876642 1124455553 234445444456777777888999999998643 2477999999999876
Q ss_pred eecCCCccc------------CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC----eEEEcCCCCCCCcceEEEEE
Q psy17309 585 LIAPMNVER------------SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN----QWTLIEPMRHRRSGVSCIAY 648 (824)
Q Consensus 585 ~~~~~p~~r------------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~~ 648 (824)
....+|.+. ...-.++=++-|+|+=........-.+-+.||.+- +|.. ..+.+ ....+..+
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmv 184 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-SASNAFMI 184 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-cccccEEE
Confidence 555555321 11223333444555522111111123456777653 5655 23332 22345566
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCC--CCCcceEEEEE---CCEEEEE
Q psy17309 649 HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY--NPRSNFAIEVI---DDMIFAI 702 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~---~~~i~v~ 702 (824)
-|.||++-... .....-.+.||+.+.+=.. ..+| .+...+++.-. +.+||+.
T Consensus 185 CGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 185 CGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEE
Confidence 79999996421 1122346799998876333 3333 33334444444 6788887
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=9.8 Score=41.51 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=110.8
Q ss_pred eEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEE
Q psy17309 476 FVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVST 551 (824)
Q Consensus 476 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~ 551 (824)
.+..+|+.+.+ |...... ............+++||+-.. ++ .+++||..+++ |..-.... ++..-..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~ 149 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPP 149 (370)
T ss_pred cEEEEeCCCCcEEecccCcC--cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCc
Confidence 68899999887 8652211 001111122222677665443 22 79999996554 87544332 3333344
Q ss_pred EEECCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCC-CcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPM-NVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~-p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+..++.+|+.. ....++.+|..+. .|+.-.+. ...+.....+..++.+|+-.- + . ...++.+|++++
T Consensus 150 v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~-~--~-~~~~~a~~~~~G 219 (370)
T COG1520 150 VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD-G--Y-DGILYALNAEDG 219 (370)
T ss_pred EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC-C--C-cceEEEEEccCC
Confidence 55567777753 2356888888764 58754332 222222222355777776422 1 1 236889999766
Q ss_pred e--EEEcCCCCCCCcce--EEEEECCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCC---CCcceEEEEECCEE
Q psy17309 629 Q--WTLIEPMRHRRSGV--SCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYN---PRSNFAIEVIDDMI 699 (824)
Q Consensus 629 ~--W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~---~r~~~~~~~~~~~i 699 (824)
+ |+.-...+..+..- ......+.||+-||.-.......+.++|..+. .|+.-..+.. +........-+|++
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v 299 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKV 299 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccE
Confidence 4 87533222222111 12233344444443111111234777877654 4776543211 11111222236777
Q ss_pred EEEccCCCCceeeEEEEEEC
Q psy17309 700 FAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~ 719 (824)
|+............+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 300 YIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEEEeccccccccceEEEec
Confidence 77643322112234555553
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=93.82 E-value=11 Score=41.73 Aligned_cols=148 Identities=8% Similarity=-0.057 Sum_probs=81.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++-..+...+...... ...-++ .|++.....+ ..+++.+|+.++..+.+...+...... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 57999999988776665443222221 122244 5655443222 257899999988877765433221111 11224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+ +|++.....+ ...++.+|..+..++.+..-... .......-+++.+++..... ....++.+|+.+..++.+.
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEcc
Confidence 4 4444332222 24789999988887766432111 11112223566666654332 2357899999987777665
Q ss_pred C
Q psy17309 682 D 682 (824)
Q Consensus 682 ~ 682 (824)
.
T Consensus 363 ~ 363 (417)
T TIGR02800 363 D 363 (417)
T ss_pred C
Confidence 3
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.78 E-value=8.3 Score=38.79 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=125.8
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccC-CCCcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~ 553 (824)
.+-.+||.+.+-..++...-..| |++++- ++..++.-+ ...+-++|+++..-++.+-. ..+-.+.-.++
T Consensus 84 aiGhLdP~tGev~~ypLg~Ga~P---hgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~a~~nlet~v 154 (353)
T COG4257 84 AIGHLDPATGEVETYPLGSGASP---HGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEHADANLETAV 154 (353)
T ss_pred cceecCCCCCceEEEecCCCCCC---ceEEECCCCCeeEecC------cceeEEecCcccceEEeecccccCCCccccee
Confidence 45567888888776654443333 333322 333333321 13688999988876665421 11222333445
Q ss_pred E--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 H--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
+ .|.++..|-....+ ++||.++.-+..+. |..-.-.++|+ -+|.+|+.-= .-+-+-..||.+..=
T Consensus 155 fD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~a 222 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG------RLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHA 222 (353)
T ss_pred eCCCccEEEeeccccce------ecCcccCceeeecc-CCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCc
Confidence 5 35787776432111 56777776554432 23333334444 3788887621 125567778877754
Q ss_pred EEcCCCCCC-CcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEEEEECCEEEEEccCC
Q psy17309 631 TLIEPMRHR-RSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAIEVIDDMIFAIGGFN 706 (824)
Q Consensus 631 ~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~ 706 (824)
+.++. |.+ ..+.--+.. -+++++.- .....+++|||.+.+|.+-+- -..+|-..--+--.+++++.--
T Consensus 223 ev~p~-P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea-- 294 (353)
T COG4257 223 EVVPQ-PNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA-- 294 (353)
T ss_pred ceecC-CCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc--
Confidence 44432 222 111111212 36677652 123578999999999998752 2234433333333566776421
Q ss_pred CCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcC
Q psy17309 707 GVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 744 (824)
..+.+.+|||++-+.+.+ |.+|-......+++
T Consensus 295 ---~agai~rfdpeta~ftv~---p~pr~n~gn~ql~g 326 (353)
T COG4257 295 ---DAGAIGRFDPETARFTVL---PIPRPNSGNIQLDG 326 (353)
T ss_pred ---ccCceeecCcccceEEEe---cCCCCCCCceeccC
Confidence 234689999999988886 34444444444443
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=93.59 E-value=7.8 Score=39.37 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=104.7
Q ss_pred CCCEEEEEccCCCCCCCceEEEEECC-----CCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECC
Q psy17309 458 PHEILFAIGGWSGGSPTDFVETYDTR-----ADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAV 532 (824)
Q Consensus 458 ~~~~l~~~GG~~~~~~~~~~~~yd~~-----~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~ 532 (824)
..+.++++.+.... .+..|.-. .++... .-.+|.+-.+.+.++.++.+|---. ..+.+.+||+.
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~--~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~ 97 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSR--TYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLT 97 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCce--EEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECc
Confidence 45677777775443 44444321 111111 1223445566666777777776532 35789999999
Q ss_pred CCceEEeccCCCCc------------ceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC----cEEeecCCCcccCce
Q psy17309 533 TKVWKEIAPMNFKR------------CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN----QWSLIAPMNVERSDA 596 (824)
Q Consensus 533 ~~~W~~~~~~~~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~ 596 (824)
+++-..-..+|.+. ...-.++-.+-|+|+=........-.+-+.||.+- +|.. ..+.+..+.
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~n 175 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAGN 175 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhcc
Confidence 98755222333221 12335666667777754433222234556777654 4653 344443333
Q ss_pred EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEE---CCEEEEEe
Q psy17309 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY---HECIYVIG 656 (824)
Q Consensus 597 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~G 656 (824)
+.++-|.||++...+... ..-.+.||+.+++=..+. +++.+-..++++.+ +.+||+.-
T Consensus 176 -aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 176 -AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred -eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 556678999997765432 345578999988765543 44444556666665 57888875
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=93.55 E-value=7.7 Score=41.90 Aligned_cols=214 Identities=20% Similarity=0.245 Sum_probs=106.7
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEE-EcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWV-KIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
++.+++.|+.+ ..+..||.++..-- .+.....|..+ --....++.+++.|+-+ ..+-.+|..+..-
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~v- 145 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDD-----KVVKYWDLSTAYV- 145 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCC-----ceEEEEEcCCcEE-
Confidence 46788887643 45778885542110 11111122111 11223478899988733 2344455555442
Q ss_pred EeccCCCCc---ceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccC
Q psy17309 538 EIAPMNFKR---CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFN 612 (824)
Q Consensus 538 ~~~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 612 (824)
...+...- ...++...+++|++.||+++ .+-.||..+.+ ..+..+.....--.++.+ +..|...||
T Consensus 146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-- 216 (487)
T KOG0310|consen 146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-- 216 (487)
T ss_pred -EEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--
Confidence 11221111 11223344788999999874 47778887763 223233222111123333 345556666
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC--CCCCc
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM--YNPRS 688 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~r~ 688 (824)
+.+-++|..++.= .+..+..-....++..+ ++.=.+.||.+ ..|-+|| +..|+.+-.+ |.|..
T Consensus 217 -----n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----~~VKVfd--~t~~Kvv~s~~~~~pvL 283 (487)
T KOG0310|consen 217 -----NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDSTRLLSGSLD-----RHVKVFD--TTNYKVVHSWKYPGPVL 283 (487)
T ss_pred -----CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCceEeecccc-----cceEEEE--ccceEEEEeeeccccee
Confidence 6788888875542 22222211111122222 44556667764 3577888 4556666433 33332
Q ss_pred ceEEEEECCEEEEEccCCCC
Q psy17309 689 NFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~~ 708 (824)
..++ .-++.-.++|+.++.
T Consensus 284 siav-s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 284 SIAV-SPDDQTVVIGMSNGL 302 (487)
T ss_pred eEEe-cCCCceEEEecccce
Confidence 2222 227788888887763
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=93.38 E-value=9 Score=37.97 Aligned_cols=159 Identities=15% Similarity=0.232 Sum_probs=81.1
Q ss_pred CceeEEEEECCEEEEEeecC--CCcccceEEEEE---CCCCceE--EeccCCC-------CcceEEEEEECCEEEEEecc
Q psy17309 499 RAYHGTAVIGYNIYVIGGFD--GNEYYNSCRCFN---AVTKVWK--EIAPMNF-------KRCYVSTAVHQDVIYAMGGY 564 (824)
Q Consensus 499 r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd---~~~~~W~--~~~~~~~-------~r~~~~~~~~~~~iyv~GG~ 564 (824)
-.++++.+++++||.+=-.. .+........|| ...+.|+ +++..+. .-.-|+.|.+++.=|++|=.
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH 154 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH 154 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred eeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec
Confidence 45567888999999876421 222233445555 4567786 4444443 34568889999988999866
Q ss_pred cCCCCCCeEEE--EeCC----CCc-EEeec-CCCcccCceEEEEECCEEEEEc-ccCCCCcCCceEEEeCCCCeEEEcC-
Q psy17309 565 NGQRRQNSVEK--YNYT----ENQ-WSLIA-PMNVERSDASATTLQGKIYITG-GFNGHNCLNSCEVYDPECNQWTLIE- 634 (824)
Q Consensus 565 ~~~~~~~~~~~--yd~~----t~~-W~~~~-~~p~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~- 634 (824)
+++.....+=. |... ... =+.++ .....-+-.++-.++|.||+.- |......-..+.+-+.....|+.+.
T Consensus 155 nGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 155 NGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp E-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 65544344322 2111 111 12222 2223333445556799999875 3333344466777777788899885
Q ss_pred CCCCCCcceEEEEECCEEEEEec
Q psy17309 635 PMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 635 ~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
|-.........+.+++.||+||-
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE
T ss_pred cccccccCCCceeeCCEEEEEec
Confidence 22222344456788999999996
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=5.8 Score=39.85 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=98.7
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
.|..+|+++..-+..+.+ ...+-.+.-.++. .+.|+..|-.. . -=++||.++.-+..+...-+--+-.++.
T Consensus 125 aI~R~dpkt~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~G---~---yGrLdPa~~~i~vfpaPqG~gpyGi~at 197 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQIG---A---YGRLDPARNVISVFPAPQGGGPYGICAT 197 (353)
T ss_pred eeEEecCcccceEEeecc-cccCCCcccceeeCCCccEEEeeccc---c---ceecCcccCceeeeccCCCCCCcceEEC
Confidence 677788877766554332 1112222223333 45666666311 1 1167777776655543322222223444
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-cCceEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-RSDASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
-+|.+|+..=. -+-+-+.||.+..=+.++ .|.+ ..+..-+. -.+++++.- .....+++|||.+.+|
T Consensus 198 pdGsvwyasla-----gnaiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW 266 (353)
T COG4257 198 PDGSVWYASLA-----GNAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCCcEEEEecc-----ccceEEcccccCCcceec-CCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccc
Confidence 58888886211 145667788777444333 2222 11111111 246666651 1235789999999999
Q ss_pred EEcCCCCC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 631 TLIEPMRH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 631 ~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
.+.+ +|. +|....-+--.|++++.-- ..+.+.+||+++.+.+.++
T Consensus 267 ~eyp-LPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYP-LPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeee-CCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 8875 343 3433322333477777421 1467899999999988864
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=13 Score=39.78 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=100.0
Q ss_pred CCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEe
Q psy17309 484 ADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMG 562 (824)
Q Consensus 484 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 562 (824)
..+|..+.... ..+.....+..+ ++.+++.|.. ..+++=+-.-.+|+.+..... -.-+.+....+..++..
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~ 189 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAV 189 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEE
Confidence 45798864321 112222333334 4456665531 345555556678998765432 23344544444444444
Q ss_pred cccCCCCCCeEEE-EeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEe-C-CCCeEEEcCCCCC
Q psy17309 563 GYNGQRRQNSVEK-YNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYD-P-ECNQWTLIEPMRH 638 (824)
Q Consensus 563 G~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd-~-~~~~W~~~~~~p~ 638 (824)
|..+ .++. .|....+|+.+.. +..+.-.+++.. ++.++++|.. + ...+. . .-.+|+.+. .|.
T Consensus 190 g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~-~~~ 255 (334)
T PRK13684 190 SSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPI-IPE 255 (334)
T ss_pred eCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcccccc-CCc
Confidence 4222 2333 2445568988743 444555555444 6788888642 1 22332 2 234798754 231
Q ss_pred --C-CcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEE-CCEEEEEccC
Q psy17309 639 --R-RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVI-DDMIFAIGGF 705 (824)
Q Consensus 639 --~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~i~v~GG~ 705 (824)
. ...++++.. ++.+|+.|.. ..+..-.....+|+.+... ..+...+.++.. +++.|++|..
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 1 122333333 5688888763 2334334455799998532 223344445544 7788888754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=15 Score=40.10 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=85.6
Q ss_pred EEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC--
Q psy17309 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE-- 580 (824)
Q Consensus 505 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t-- 580 (824)
+..++++|+... + ..++.+|+.+.+ |+.................+|+||+-.. ++ .+++||..+
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCc
Confidence 555888888621 1 269999999987 8653332001111112223788777543 22 789999954
Q ss_pred CcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCC-CCCCcceEEEEECCEEEEEec
Q psy17309 581 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPM-RHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG 657 (824)
..|+.-.+.. ++..-..++.++.+|+.- ....++++|..+. .|+.-.+. ...+.....+..++.+|+-..
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence 4587654432 344444555577777653 1356888888765 48754332 122222222345666666532
Q ss_pred CCCCCccceEEEEeCCCC--CEEE
Q psy17309 658 FNGMSRMCNGEKYNPVTK--TWSQ 679 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~--~W~~ 679 (824)
+ . ...++.+|+.+. .|+.
T Consensus 206 -~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 206 -G--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -C--C-cceEEEEEccCCcEeeee
Confidence 1 1 236889999765 4875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=18 Score=40.43 Aligned_cols=181 Identities=7% Similarity=-0.053 Sum_probs=94.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ..+++++|..+...+.+..-+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 579999999988777665432111 11122244 4544332222 257999999999888775433211111 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
+ +|+......+ ...++.+|..+++++.+.... .........-+ +.|++....++ ...++.+|+.+...+.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 4 4554432221 357889999888887764221 11111122224 44555443221 34689999999888887
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 681 PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..... .......-+++.+++....++ ...++..+..
T Consensus 371 t~~~~--~~~p~~spdg~~i~~~~~~~g--~~~l~~~~~~ 406 (430)
T PRK00178 371 TDTSL--DESPSVAPNGTMLIYATRQQG--RGVLMLVSIN 406 (430)
T ss_pred cCCCC--CCCceECCCCCEEEEEEecCC--ceEEEEEECC
Confidence 64321 111223335665555433222 1246666654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=18 Score=40.42 Aligned_cols=191 Identities=6% Similarity=-0.115 Sum_probs=96.9
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|+.+++...+...+...... ...-+| +|++....++ ..+++.+|..+..-..+...+..-.. ....-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCc-eeEcCC
Confidence 67999999999888776554322211 222244 4544433222 36799999998887776553322111 122224
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
++-.++..... ....++.+|..+...+.+..... ........-+| .|++... ... ...++.+|+.+...+.+.
T Consensus 301 G~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 301 GSQIVFESDRS--GSPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCEEEEEECCC--CCCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEecc
Confidence 44333332211 12578899988877766643211 11111222244 4444432 211 247889998777666554
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEEECCCCcEEec
Q psy17309 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 682 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~ 727 (824)
... ........-+++.+++-...... ....++.+|.+...-..+
T Consensus 375 ~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 375 SGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred CCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 321 11111222355544443222111 124688888876655444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.89 E-value=14 Score=38.73 Aligned_cols=215 Identities=12% Similarity=0.173 Sum_probs=94.5
Q ss_pred CCCcEEEcccCCCCC-CCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEecc-CCCCcceEEEEEE-CCEEE
Q psy17309 483 RADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MNFKRCYVSTAVH-QDVIY 559 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iy 559 (824)
.-.+|.......... .....++...++..|++|.. ..++.-.-.-.+|+.++. .+.+...+.+..+ ++.++
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~ 118 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAE 118 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEE
Confidence 446798754222211 22334455568889988742 224444445678999862 2344444555444 56777
Q ss_pred EEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC
Q psy17309 560 AMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 638 (824)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 638 (824)
++|.. ..+++=.=.-.+|+.+..-.. -.-..+... ++++++++. .+ +-....|+....|+.......
T Consensus 119 l~~~~------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~-~G----~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 119 LAGDR------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSS-RG----NFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp EEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEET-TS----SEEEEE-TT-SS-EEEE--SS
T ss_pred EEcCC------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEEC-cc----cEEEEecCCCccceEEccCcc
Confidence 77642 345555556678998754222 112222333 566555553 22 223467888888998875444
Q ss_pred CCcceEEEEECCEEEEEecCCCCCccceEEEEe--CCCCCEEECCCCCCCCcceEE--EEE--CCEEEEEccCCCCceee
Q psy17309 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN--PVTKTWSQVPDMYNPRSNFAI--EVI--DDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 639 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~~~--~~~--~~~i~v~GG~~~~~~~~ 712 (824)
.|.......-++.|+++. .. ..+..=+ ....+|.+.. .|.....+.. .+. ++.+++.||...
T Consensus 187 ~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----- 254 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGT----- 254 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT------
T ss_pred ceehhceecCCCCEEEEe-CC-----cEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCcc-----
Confidence 444433334467888875 22 1233333 3445787732 2333333332 222 689999998642
Q ss_pred EEEEEECCCCcEEecc
Q psy17309 713 HVECYDEKTDEWYEAT 728 (824)
Q Consensus 713 ~v~~yd~~~~~W~~~~ 728 (824)
+++=.-.-++|++..
T Consensus 255 -l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 255 -LLVSTDGGKTWQKDR 269 (302)
T ss_dssp -EEEESSTTSS-EE-G
T ss_pred -EEEeCCCCccceECc
Confidence 333333557899874
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=92.85 E-value=8.1 Score=39.08 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=96.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeC----CCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNY----TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
++++|++.|.. ...+.++.|.- ....+...-.+|.+-.+.+.++++|.+|.--. ....+.+||..+.+-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcE
Confidence 46778776543 12345555532 34444444467888889999999999998533 236799999999876
Q ss_pred EEcCCCCCCC------------cceEEEEECCEEEEEecCCCCCccceEEEEeCCC----CCEEECCCCCCCCcceEEEE
Q psy17309 631 TLIEPMRHRR------------SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVT----KTWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 631 ~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~ 694 (824)
.....+|.+. ...-.++-.+.|+|+=........-.+-..||.+ .+|.. ..+. +....+..
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k-~sa~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNK-RSASNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCc-ccccccEE
Confidence 5444444321 1122344456677763322221112334667765 35655 2222 23335667
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCcc
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRS 735 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 735 (824)
+-|.||++-..... ...-.+.||+.+++=. ...+|.+..
T Consensus 184 vCGvLY~~~s~~~~-~~~I~yayDt~t~~~~-~~~i~f~n~ 222 (255)
T smart00284 184 ICGILYVTRSLGSK-GEKVFYAYDTNTGKEG-HLDIPFENM 222 (255)
T ss_pred EeeEEEEEccCCCC-CcEEEEEEECCCCccc-eeeeeeccc
Confidence 78999999532211 1223678999887522 244555433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=92.80 E-value=19 Score=39.98 Aligned_cols=191 Identities=10% Similarity=-0.065 Sum_probs=99.2
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....=+.+...... .......-+++..++....+. ...++++|+.++.-..+...+...... ...-+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~-~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP-ILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAP-AFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc-eecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccce-EECCC
Confidence 45677777754432333222111 111112234544444433221 267999999988776665544332221 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
+ .|++....++ ...++.+|..++..+.+...+...... ...-+++ |++.....+ ...++.+|..+..+..+
T Consensus 245 g~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 245 GSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRL 317 (417)
T ss_pred CCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEe
Confidence 4 5655433222 257899999988877765433211111 1122444 544433221 24799999988888776
Q ss_pred CCCCCCCcceE-EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFA-IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.... ..... ...-+++.+++...+. ....++.+|+.+..++.+.
T Consensus 318 ~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 318 TFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEcc
Confidence 4321 11122 2223566555554433 2247899999988777664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.5 Score=42.87 Aligned_cols=154 Identities=13% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCCcCe---EEEEE-ECCEEEEEccCC-------C----C------cccceEEEEEccCCc----eeEecccCCCcceeE
Q psy17309 82 MGPRAY---HGTAV-IGYNIYVIGGFD-------G----N------EYYNSCRCFNAVTKV----WKEIAPMNFKRCYVS 136 (824)
Q Consensus 82 p~~R~~---h~~~~-~~~~~yv~GG~~-------~----~------~~~~~~~~~~~~~~~----W~~~~~~~~~R~~~~ 136 (824)
|.||+| |.|+. +++.|| ||||- + . +-++.++.||.++.+ |++-..- ++...+
T Consensus 30 ~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~--~~~WaG 106 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD--KTKWAG 106 (339)
T ss_pred CCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC--cccccc
Confidence 577887 55555 466665 69952 1 1 124779999998877 7665333 333332
Q ss_pred EE---E---ECCEEEEEcCcCCCCCCCcEEEEECCCCeEEEeccccceeeccCCeEEEEcccCCceeeceEEEEECCCCe
Q psy17309 137 TA---V---HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKV 210 (824)
Q Consensus 137 ~~---~---~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 210 (824)
-+ . ++|.|++.-+ ||...+ -+|..|..+.+=+.+..-+......-.....||=-....-.+.+.|+|+.+++
T Consensus 107 EVSdIlYdP~~D~LLlAR~-DGh~nL-Gvy~ldr~~g~~~~L~~~ps~KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 107 EVSDILYDPYEDRLLLARA-DGHANL-GVYSLDRRTGKAEKLSSNPSLKGTLVHDYACFGINNFHKGVSGIHCLDLISGK 184 (339)
T ss_pred chhheeeCCCcCEEEEEec-CCccee-eeEEEcccCCceeeccCCCCcCceEeeeeEEEeccccccCCceEEEEEccCCe
Confidence 22 2 3578887654 444333 67888888988888866554332222222334321122346789999999999
Q ss_pred E--EEec--------ccccCcceeeeeeecceEEEE-cccc
Q psy17309 211 W--KEIA--------PMNFKRCYVSTAVHQDVIYAM-GGYN 240 (824)
Q Consensus 211 W--~~i~--------~~~~~r~~~~~~~~~~~~~~~-~g~~ 240 (824)
| +... ..-.++.+....+++.+|... ||.+
T Consensus 185 ~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~ 225 (339)
T PF09910_consen 185 WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIF 225 (339)
T ss_pred EEEEecccccCCCCCceEeeccccEEEEeeeEEEEEeccEE
Confidence 9 3321 122344455566677777666 5544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=21 Score=39.82 Aligned_cols=183 Identities=8% Similarity=-0.039 Sum_probs=95.4
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
...++++|..+++-..+...+.... .....-+| +|++....++ ..+++.+|+.++.-+.+..-...-... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 3579999999888777665542211 11222244 5554432222 257999999988876664432211111 1222
Q ss_pred CCE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceE-EEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 602 QGK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVS-CIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 602 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
+|+ |+......+ ...++.+|..+++.+.+..-. ..... ...-+ ..|++..+.++ ...++.+|+.+.+.+
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 454 444322222 246888998888877764211 11111 22224 45555444211 247899999988888
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+...+. .......-+++.+++...... ...++.+|.+..
T Consensus 374 ~Lt~~~~--~~~p~~spdG~~i~~~s~~~g--~~~L~~~~~~g~ 413 (433)
T PRK04922 374 TLTPGSL--DESPSFAPNGSMVLYATREGG--RGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCC--CCCceECCCCCEEEEEEecCC--ceEEEEEECCCC
Confidence 7754321 111123335655555433221 235777777543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=23 Score=39.56 Aligned_cols=190 Identities=8% Similarity=-0.072 Sum_probs=96.1
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....=+.+..-..+ .......-+|+-.++...... ...++++|+.+.+.+.+...+....... ..-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPR-FSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcE-ECCC
Confidence 46788888765433333322111 111112224543333322211 2689999999998887766554322221 2224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ..+++.+|..+.....+...+..-. .....-+++ |+......+ ...++.+|..+...+.+
T Consensus 257 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEe
Confidence 4 4544433222 3578999999888777654332111 112222444 443322211 35789999888777766
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.... .........-++ .|++.. .... ...++++|++++....+
T Consensus 330 t~~~-~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 330 SFGG-GRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred ecCC-CcccCeEECCCCCEEEEEE-cCCC--ceEEEEEECCCCceEec
Confidence 4321 111111122244 454443 2221 23788999877766555
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.4 Score=41.94 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=87.6
Q ss_pred CEEEEEeec-C-C--Cccc-ceEEEEECCCC-----ceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeC
Q psy17309 509 YNIYVIGGF-D-G--NEYY-NSCRCFNAVTK-----VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY 578 (824)
Q Consensus 509 ~~lyv~GG~-~-~--~~~~-~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 578 (824)
...+++|-. . + .... ..+..|+.... +++.+.....+-.-.+++.++++|.+..| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 466667643 2 1 1122 67889998885 56666555555556778888999777766 67889999
Q ss_pred CCCc-EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q psy17309 579 TENQ-WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIG 656 (824)
Q Consensus 579 ~t~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 656 (824)
..++ +...+.+..+-...++.+.++.|++---..+ -.+..|+.+..+-..++.-+.++...++..+ ++. .+++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 8888 8888877777677777888887776422221 2345678766667777654556666666666 666 4444
Q ss_pred c
Q psy17309 657 G 657 (824)
Q Consensus 657 G 657 (824)
+
T Consensus 190 ~ 190 (321)
T PF03178_consen 190 G 190 (321)
T ss_dssp E
T ss_pred E
Confidence 4
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=27 Score=39.59 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceE-----EeccCCCCcceE-EEEEE--CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-----EIAPMNFKRCYV-STAVH--QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
++.+++.|+.+ ..+.+||..++... .+..+....... +++.. ++.+++.||.+ ..+.+||..
T Consensus 87 d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtVrIWDl~ 156 (493)
T PTZ00421 87 DPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVVNVWDVE 156 (493)
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEEEEEECC
Confidence 45677777754 35777887654321 111121111111 22222 24577777754 468888988
Q ss_pred CCcEEeecCCCcccC-ceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEE-EcCCCCCCCcceEEEEE-CCEEEEE
Q psy17309 580 ENQWSLIAPMNVERS-DASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAY-HECIYVI 655 (824)
Q Consensus 580 t~~W~~~~~~p~~r~-~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~-~~~iyv~ 655 (824)
+.+-.. .+..... -.+++. -++.+++.|+.+ ..+..||+.+.+-. .+..-...+.. .++.. ++..++.
T Consensus 157 tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~~~ivt 228 (493)
T PTZ00421 157 RGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRKDLIIT 228 (493)
T ss_pred CCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCCCeEEE
Confidence 764321 1211111 112222 267788888765 46788999876522 11111111111 12222 3334444
Q ss_pred ecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.|.+.. ....+..||+.+.. .... .... .....+..+ ++.++++||...+ .|.+||..++....
T Consensus 229 ~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgDg----~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 229 LGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGEG----NIRCFELMNERLTF 296 (493)
T ss_pred EecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCCC----eEEEEEeeCCceEE
Confidence 443321 13568889986432 1111 0111 011112222 5666777764222 57778877766543
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.17 E-value=19 Score=36.72 Aligned_cols=147 Identities=12% Similarity=0.168 Sum_probs=83.6
Q ss_pred eEEEEEECCEEEEEeccc-------C--C--------CCCCeEEEEeCCCCc----EEeecCCCcccCceEEEE----EC
Q psy17309 548 YVSTAVHQDVIYAMGGYN-------G--Q--------RRQNSVEKYNYTENQ----WSLIAPMNVERSDASATT----LQ 602 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~-------~--~--------~~~~~~~~yd~~t~~----W~~~~~~p~~r~~~~~~~----~~ 602 (824)
+-++..+++.||+ ||+- + . .-.+.+..||.++++ |++--.-+....+-..-. ++
T Consensus 39 YNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 39 YNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred ceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCc
Confidence 4456667777775 7752 1 0 124678999999887 554333333222221111 26
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCE--EEC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTW--SQV 680 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~ 680 (824)
++|++.-+ + ....--++..|.+++.=+.+..-|... ++..++...+-+ .+-......+.+||+.+++| +..
T Consensus 118 D~LLlAR~-D-Gh~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 118 DRLLLARA-D-GHANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESF 190 (339)
T ss_pred CEEEEEec-C-CcceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEec
Confidence 78887643 2 223345788888888887776655542 234444444433 22233367899999999999 443
Q ss_pred CCC-------CCCCcceEEEEECCEEEEE
Q psy17309 681 PDM-------YNPRSNFAIEVIDDMIFAI 702 (824)
Q Consensus 681 ~~~-------p~~r~~~~~~~~~~~i~v~ 702 (824)
+.- ...|....++...+++|.|
T Consensus 191 ~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 191 DVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 211 1124444566666766655
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=19 Score=43.93 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=90.1
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC-cceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-RCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
+..++.|+.+ ..+..||..+++-. ..+... ..-.+++.. ++.+++.||.+ ..+.+||..+..-.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~- 611 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSI- 611 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEE-
Confidence 4455566543 45788888765432 222111 112233332 56777888754 45788888765321
Q ss_pred ecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCCcc-eEEEEECCEEEEEecCC
Q psy17309 586 IAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRRSG-VSCIAYHECIYVIGGFN 659 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~ 659 (824)
..+... ....++.. ++.+++.|+.+ ..+..||..+.. ...+. ..... ..+...++..++.|+.+
T Consensus 612 -~~~~~~-~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~~~~~lvs~s~D 681 (793)
T PLN00181 612 -GTIKTK-ANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFVDSSTLVSSSTD 681 (793)
T ss_pred -EEEecC-CCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEec---CCCCCEEEEEEeCCCEEEEEECC
Confidence 111111 11122222 46778888755 468889986542 11111 11111 12223366667777654
Q ss_pred CCCccceEEEEeCCCC----CEEECCCCCCCCc--ceEEEEECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 660 GMSRMCNGEKYNPVTK----TWSQVPDMYNPRS--NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
..+..||+... .|..+..+..... .......++.+++.|+.++ .+.+|+...
T Consensus 682 -----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 682 -----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred -----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 45777887543 2332222211111 1112233677888888665 577777654
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=91.00 E-value=7.2 Score=41.86 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCE-EEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGK-IYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
.-.+.+++|.++. -.++..|-.+|. .+.++-..++.-..+.+ +|. ..+++|.. .-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeeccccccc
Confidence 3467888887643 345555656655 44444333222222222 555 66666643 56889999999988
Q ss_pred EcCCCCC---CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCC
Q psy17309 632 LIEPMRH---RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 632 ~~~~~p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 708 (824)
++.++-. +-...-.+..++...++-|.+ .-++.....+++|-.--.++..........-+.+|+++||..
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G-- 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG-- 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc--
Confidence 8875421 111112344566666776653 346677777777754333333323333333356788888753
Q ss_pred ceeeEEEEEECCCC
Q psy17309 709 TTIYHVECYDEKTD 722 (824)
Q Consensus 709 ~~~~~v~~yd~~~~ 722 (824)
.||+||..++
T Consensus 367 ----eV~v~nl~~~ 376 (514)
T KOG2055|consen 367 ----EVYVWNLRQN 376 (514)
T ss_pred ----eEEEEecCCc
Confidence 6999999886
|
|
| >PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.43 Score=38.69 Aligned_cols=39 Identities=23% Similarity=0.558 Sum_probs=30.7
Q ss_pred ecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchH
Q psy17309 271 HITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNC 309 (824)
Q Consensus 271 ~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~ 309 (824)
.++.+.+.+|+.||++|+|+.|.+.|++++...+...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~ 48 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSP 48 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-H
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCH
Confidence 346778999999999999999999999999887765544
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.75 E-value=20 Score=37.49 Aligned_cols=199 Identities=14% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEE
Q psy17309 482 TRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIY 559 (824)
Q Consensus 482 ~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iy 559 (824)
-...+|..++.+ .+.|...+.+..+ ++.+.++|.. ..+++=.-.-.+|+.+..-... .-..+... ++.++
T Consensus 88 DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~v 159 (302)
T PF14870_consen 88 DGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYV 159 (302)
T ss_dssp STTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EE
T ss_pred CCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEE
Confidence 345689987533 2234444555555 6667776532 3456555566789987643322 22223333 56666
Q ss_pred EEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEe--CCCCeEEEcC-CC
Q psy17309 560 AMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYD--PECNQWTLIE-PM 636 (824)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~-~~ 636 (824)
++|.. + +-....|+....|+........|-......-++.|+++. ..+ .+..=+ -...+|.+.. +.
T Consensus 160 avs~~-G----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 160 AVSSR-G----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp EEETT-S----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-TT
T ss_pred EEECc-c----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccCCc
Confidence 66532 1 223456888888987654433333333333367787764 221 122222 2345677632 22
Q ss_pred CCCCcceE-EEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEE-CCEEEEEccC
Q psy17309 637 RHRRSGVS-CIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVI-DDMIFAIGGF 705 (824)
Q Consensus 637 p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~i~v~GG~ 705 (824)
+....+.- ++.. ++.+++.||. ..+++=.-.-++|++.... +.|-..+.++-+ +++-|++|-.
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGS------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEEST------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred ccCceeeEEEEecCCCCEEEEeCC------ccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 22223222 2333 5889999984 3455555567899998532 333333444433 6799999853
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=27 Score=37.28 Aligned_cols=183 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred ceEEEEECCC-CcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECC-CCceEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRA-DRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAV-TKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~-~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~ 550 (824)
..+..||..+ .++..+...+. ....+.++.. +..||+.+.. ...+..|+.. ++++..+...+.+..-+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 4567777753 45554322221 1112223332 4567775431 2456667765 456765544333222223
Q ss_pred EEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcccCceEEEEE-C-CEEEEEcccCCCCcCCceEEEe
Q psy17309 551 TAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVERSDASATTL-Q-GKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 551 ~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~v~~yd 624 (824)
++.. ++ .+|+..- . .+.+.+|+..++. .+.+..++.....|.++.. + +.+|+..- ..+.+.+||
T Consensus 85 i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d 154 (330)
T PRK11028 85 ISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFT 154 (330)
T ss_pred EEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEE
Confidence 3333 44 5666542 1 2567777775321 1222222322334554444 3 46666542 235788999
Q ss_pred CCCCe-EEEcC----CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC--CCCEEE
Q psy17309 625 PECNQ-WTLIE----PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV--TKTWSQ 679 (824)
Q Consensus 625 ~~~~~-W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~ 679 (824)
..++. ..... ..+....-..++.. +..+|+.-.. .+++.+||.. +.+.+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEE
Confidence 87632 22110 11211111223333 3467776432 3567777765 445433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=35 Score=38.28 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=81.1
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|+.+++-..+...+...... ...-++ .|++....++ ..+++.+|..+++.+.+..-...-.. ....-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTE-PSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccc-eEECCC
Confidence 57999999988777666544221111 122244 5655543222 25799999999988877543211111 112224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+ .|++.....+ ...++.+|..+++++.+..- ..........-+|+.+++.+... ....++.+|+.+.+.+.+.
T Consensus 317 G~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 317 GKSLIFTSERGG---KPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecC--CceEEEEEECCCCCeEEcc
Confidence 4 4544432222 25789999999988877421 11111122222444333433222 1347889999998887765
Q ss_pred C
Q psy17309 682 D 682 (824)
Q Consensus 682 ~ 682 (824)
.
T Consensus 391 ~ 391 (448)
T PRK04792 391 S 391 (448)
T ss_pred C
Confidence 3
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=34 Score=38.11 Aligned_cols=204 Identities=11% Similarity=-0.054 Sum_probs=100.7
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM 589 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~ 589 (824)
-+|+....+ ......++..|.....=..+...+.. ...-...-+|+.+++..... ....++.+|..+.+-+.+...
T Consensus 166 iayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~~-~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 166 IAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQP-LMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred EEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCCc-eeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCC
Confidence 345554322 23456788888765432333222111 11112223454333322211 125789999988876666655
Q ss_pred CcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEE
Q psy17309 590 NVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGE 668 (824)
Q Consensus 590 p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 668 (824)
+..-.. ....-+| +|++....++ ...++.+|..+++.+.+..-+..... ....-+|+-+++..... ....++
T Consensus 242 ~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s~~~--g~~~Iy 314 (429)
T PRK03629 242 PRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTSDQA--GRPQVY 314 (429)
T ss_pred CCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCc-eEECCCCCEEEEEeCCC--CCceEE
Confidence 432221 1122244 4555433222 24689999998887776543221111 11122455333333211 135788
Q ss_pred EEeCCCCCEEECCCCCCCCcceEEEEECCE-EEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 669 KYNPVTKTWSQVPDMYNPRSNFAIEVIDDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 669 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+|+.+..-+.+..... ........-+++ |++.+..++ ...++++|++++.++.+.
T Consensus 315 ~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 315 KVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred EEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeC
Confidence 89998877666532211 111122223454 444443322 236899999999888774
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=90.15 E-value=33 Score=37.66 Aligned_cols=268 Identities=14% Similarity=0.166 Sum_probs=128.7
Q ss_pred ECCEEEEEeecCCCcccceEEEEECCCCceEEec-------cCCCCcceEEEEEE-------CCEEEEEecccCCCCCCe
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA-------PMNFKRCYVSTAVH-------QDVIYAMGGYNGQRRQNS 572 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~ 572 (824)
.++.|+|+.|. ...-.||-....|.+.. .|.. -.+|.+... +...|+..+.++.
T Consensus 225 Tg~~iLvvsg~------aqakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~Dgt----- 292 (641)
T KOG0772|consen 225 TGDQILVVSGS------AQAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGT----- 292 (641)
T ss_pred CCCeEEEEecC------cceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccccCcccceEEecCCCc-----
Confidence 37888888884 33456666666665543 2211 122322221 1234554443322
Q ss_pred EEEEeCCC--CcEEee--cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCC-----CCCc
Q psy17309 573 VEKYNYTE--NQWSLI--APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR-----HRRS 641 (824)
Q Consensus 573 ~~~yd~~t--~~W~~~--~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-----~~r~ 641 (824)
+..+|... .+-+.+ .++...|...+.|.. ++++ +.+|+.+ .++..+|. ..|..-+.+- .+..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~~--~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWDK--GSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC----Cceeeeec--CCcccccceEeeeccCCCC
Confidence 22222221 111222 234456777777766 5677 5566543 36777774 4454433321 2222
Q ss_pred ceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcce-EEEEECCEEEEEccCCCCc-eeeEEEEE
Q psy17309 642 GVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF-AIEVIDDMIFAIGGFNGVT-TIYHVECY 717 (824)
Q Consensus 642 ~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~-~~~~v~~y 717 (824)
..+++. .+|++.+.-|.++...+.++-.+.---..|+-++.+ --.. ++..-+++|++.|-.-.+. ....++.|
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~---~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP---FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc---CCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 333443 377777777765433222222222223456555432 1122 2333488999988653332 23357888
Q ss_pred ECCCCcEEeccCCCCCccceeEEEEcCccceeccccccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCCC
Q psy17309 718 DEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSNV 797 (824)
Q Consensus 718 d~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~~ 797 (824)
|+.+ ...+..++..-.....|...-+|.-.. .+.+++ ..+++ ||++.++--.-.+.+...
T Consensus 443 d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~--~gsgdG-----~~~vy-----------Ydp~~S~RGak~cv~k~~ 502 (641)
T KOG0772|consen 443 DRMT--LDTVYKIDISTASVVRCLWHPKLNQIF--AGSGDG-----TAHVY-----------YDPNESIRGAKLCVVKPP 502 (641)
T ss_pred eccc--eeeEEEecCCCceEEEEeecchhhhee--eecCCC-----ceEEE-----------ECccccccchhheeecCc
Confidence 8765 334444444323333333333322211 111121 11233 677666665555556666
Q ss_pred cCccccccCccceeeeecC
Q psy17309 798 SSSDGVMNNASSMMLVPRY 816 (824)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~ 816 (824)
|......--...++++|+-
T Consensus 503 rkk~~~e~~~~~~ii~pha 521 (641)
T KOG0772|consen 503 RKKHIDEDLSEDVIINPHA 521 (641)
T ss_pred cccchhhhcCcceEEcccc
Confidence 6666555566677777763
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=54 Score=39.98 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcceEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCc--
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQ-- 582 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-- 582 (824)
++.+++.||.+ ..+..||..+..- ..+. ....-.++.. -++.+++.|+.+ ..+..||..+..
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~ 653 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCcc
Confidence 45677777754 3578888876532 2221 1111112222 246777877744 468889987543
Q ss_pred EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC----eEEEcCCCCCCCc--ceEEEEECCEEEEEe
Q psy17309 583 WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN----QWTLIEPMRHRRS--GVSCIAYHECIYVIG 656 (824)
Q Consensus 583 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~iyv~G 656 (824)
...+..-. ..-..+...++..++.|+.+ ..+-.||..+. .|..+..+..... ...+...++.+++.|
T Consensus 654 ~~~~~~h~--~~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 654 LCTMIGHS--KTVSYVRFVDSSTLVSSSTD-----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred ceEecCCC--CCEEEEEEeCCCEEEEEECC-----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 11111111 11112233466667777755 35777887543 2333322211111 112223356777777
Q ss_pred cCCCCCccceEEEEeCCC
Q psy17309 657 GFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~ 674 (824)
+.+ ..+.+|+...
T Consensus 727 s~D-----~~v~iw~~~~ 739 (793)
T PLN00181 727 SET-----NEVFVYHKAF 739 (793)
T ss_pred eCC-----CEEEEEECCC
Confidence 754 4567777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.54 E-value=38 Score=37.51 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=122.4
Q ss_pred CCCCceEEEEECCCCcEEEcccCCCCCCCceeE-EEEE-CCEEEEEeecCCCcc------cceEEEEECCCCceE--Eec
Q psy17309 471 GSPTDFVETYDTRADRWVKIDQVDPMGPRAYHG-TAVI-GYNIYVIGGFDGNEY------YNSCRCFNAVTKVWK--EIA 540 (824)
Q Consensus 471 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~-~~~~-~~~lyv~GG~~~~~~------~~~~~~yd~~~~~W~--~~~ 540 (824)
+.....+..+|..+++... . .. .....+ ++.. ++..++....+.... ...++++...+..-. .+-
T Consensus 146 G~e~~~l~v~Dl~tg~~l~--d-~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLP--D-GI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp TSSEEEEEEEETTTTEEEE--E-EE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred CCceEEEEEEECCCCcCcC--C-cc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 3444567888888875543 1 11 122222 4444 435555554433222 567888888776543 222
Q ss_pred cCCCCcc-eEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCC-----cEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 541 PMNFKRC-YVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTEN-----QWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 541 ~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
.-+.... ...+.. -+++..++.-..+.. .+.++..|.... .|..+.+--.. ....+...++.+|+.-..+
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~- 297 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDD- 297 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCC-
Confidence 2222232 333322 244433333222222 478999999875 78877542222 2223444588999876532
Q ss_pred CCcCCceEEEeCCCCe---EE-EcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCC-CCCEEECCCCCCCCc
Q psy17309 614 HNCLNSCEVYDPECNQ---WT-LIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV-TKTWSQVPDMYNPRS 688 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~---W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~ 688 (824)
.....+..++..+.. |. .+.+-.....--.+...++.|++.-=.++ ...+.++|+. +..-..+ ++|..-
T Consensus 298 -a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~~~~~~~~~-~~p~~g- 371 (414)
T PF02897_consen 298 -APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLDDGKESREI-PLPEAG- 371 (414)
T ss_dssp --TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT-TEEEEEE-ESSSSS-
T ss_pred -CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECCCCcEEeee-cCCcce-
Confidence 334577888887664 66 44332222334445566888887754322 4678999988 3333333 233221
Q ss_pred ceEEEEE---CCEEEE-EccCCCCceeeEEEEEECCCCcEEec
Q psy17309 689 NFAIEVI---DDMIFA-IGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 689 ~~~~~~~---~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
....... .+.+++ +.+.. .-..++.||+.+++.+.+
T Consensus 372 ~v~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 372 SVSGVSGDFDSDELRFSYSSFT---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEES-TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEE
T ss_pred EEeccCCCCCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEE
Confidence 1111111 234333 44432 234799999999987764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.34 E-value=9.7 Score=43.64 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 3566899999654 2468889988754 8754433211 112234566888887432 2468
Q ss_pred EEEeCCCCe--EEEcC-CCCCC-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEE
Q psy17309 621 EVYDPECNQ--WTLIE-PMRHR-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 621 ~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (824)
.++|.+|++ |+.-. ..... ....+-++.+++||+-...........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998875 76542 11111 1122335668888775432222234578899998764 764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1987|consensus | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.68 Score=48.83 Aligned_cols=118 Identities=10% Similarity=-0.062 Sum_probs=92.1
Q ss_pred eeeeeeecceEEEEccc-ccccccceeEEeeecccchhhhheeecccceecCHhhH---HHHHHHHhhcChHhHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNV---ASLLLATDFFCMSKAQDLCCD 298 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~-~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v---~~ll~~a~~~~i~~l~~~c~~ 298 (824)
...+++...+|.+|+-. ..+..++.+.+.+.+++.++.+..|.|+..-.-.-+.+ ..++.+|..+....++..|..
T Consensus 116 ~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~ 195 (297)
T KOG1987|consen 116 KLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMP 195 (297)
T ss_pred ceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHH
Confidence 33455555566666322 12223344477788999999999999997665555555 489999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHH
Q psy17309 299 FIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILR--NFVDVA 340 (824)
Q Consensus 299 ~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~--~f~~v~ 340 (824)
.+...+...|....+..++.+.+..+..++..++.. ++..+.
T Consensus 196 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 196 VLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred HHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 999999999988889999999999999999999887 666655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=88.99 E-value=37 Score=36.59 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=117.8
Q ss_pred EEccCCCCCCC-ceEEEEECCCCcEEEcccCCCCCCCceeEEEE--ECCEEEEEeecCCCcccceEEEEECCCCceEEec
Q psy17309 464 AIGGWSGGSPT-DFVETYDTRADRWVKIDQVDPMGPRAYHGTAV--IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 540 (824)
Q Consensus 464 ~~GG~~~~~~~-~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 540 (824)
.+|++..+... =.++.||..+.++..+...... -.-.-++. -++.||+..........-..+..+..+++.+.+.
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 45665542221 2355677899999875431111 11111223 2678888865321111222444555557888777
Q ss_pred cCCC-CcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC-cEEee---------cCC---CcccCceEEEEE--C
Q psy17309 541 PMNF-KRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLI---------APM---NVERSDASATTL--Q 602 (824)
Q Consensus 541 ~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~---------~~~---p~~r~~~~~~~~--~ 602 (824)
..+. ...-+.++.. +..||+.- +. ...+.+|++..+ +-... .+- ...-..|.+... +
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eeccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 6653 3332333332 44566652 11 256777777653 21111 111 122334555554 3
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCe--EEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC--C
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV--T 674 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~--~ 674 (824)
+.+||.. --.+.+..|+.+.+. .+... .+|..-.-..++.. +..+||+.-.+ +.|.+|+.. +
T Consensus 156 ~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~ 225 (345)
T PF10282_consen 156 RFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSD 225 (345)
T ss_dssp SEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTT
T ss_pred CEEEEEe-----cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccC
Confidence 5677752 113678888877665 55433 22322211122333 35799987642 455555544 6
Q ss_pred CCEEEC---CCCCCC---CcceEEEEE---CCEEEEEccCCCCceeeEEEEEEC--CCCcEEeccCCC
Q psy17309 675 KTWSQV---PDMYNP---RSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDE--KTDEWYEATDMN 731 (824)
Q Consensus 675 ~~W~~~---~~~p~~---r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p 731 (824)
..++.+ +.+|.. ....+...+ +..||+.-.. .+.|-+|+. ++.+-+.+...+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEe
Confidence 666654 334322 212333333 4467776422 235666665 556666654443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=50 Score=38.08 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=88.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCc--eEEe----ccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEI----APMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~----~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
+.+++.||.+ ..+.+||..+.. -..+ ..+.........+.. +..+++.||.+ ..+.+||+.
T Consensus 87 ~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D-----gtIrIWDl~ 156 (568)
T PTZ00420 87 SEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD-----SFVNIWDIE 156 (568)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC-----CeEEEEECC
Confidence 5677778755 357778876431 1110 011111111122222 23455666644 467888887
Q ss_pred CCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCC--cceEEEE-----ECCE
Q psy17309 580 ENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR--SGVSCIA-----YHEC 651 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r--~~~~~~~-----~~~~ 651 (824)
+.+=. ..+.....-.+++. .+|.+++.++.+ ..+..||+.+.+= +..+.... ....++. -++.
T Consensus 157 tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 157 NEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred CCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EEEEecccCCceeEEEEeeeEcCCCC
Confidence 76411 11111111222222 267777777644 4688999987642 22221111 1111111 2445
Q ss_pred EEEEecCCCCCccceEEEEeCCC-CCEEECCCCCCCCcceEEE-EE---CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVT-KTWSQVPDMYNPRSNFAIE-VI---DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~-~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.++.+|.+.. ....+..||+.. ..-...-.+.. ....+. .. .+.+|+.|..++ .+.+|+...+.-..
T Consensus 228 ~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~-----tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 228 YILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDG-----NCRYYQHSLGSIRK 299 (568)
T ss_pred EEEEEEcCCC-CccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECCC-----eEEEEEccCCcEEe
Confidence 6666665432 123688888774 21111001100 111111 11 477888885544 57777776654333
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=88.45 E-value=50 Score=37.52 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=114.2
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCC-----cccceEEEEECCCCc-eEEeccCCCC
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGN-----EYYNSCRCFNAVTKV-WKEIAPMNFK 545 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~~~yd~~~~~-W~~~~~~~~~ 545 (824)
....++.|++.. .|...+....|..|+--+.+.. +++||-.|+...- ......+.+|+..+. |+..... ..
T Consensus 45 t~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 45 TDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred cCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 456799999987 6877666666777888888888 8899999873210 112233444444433 4422111 11
Q ss_pred cceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEE-EEcccCCCCcCCceEEEe
Q psy17309 546 RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY-ITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ly-v~GG~~~~~~~~~v~~yd 624 (824)
.-.++..-+|.+|.+-| ..+.-+.-..++...+..-....+.... ++||..+ .-+-++|
T Consensus 123 -~~l~IgcddGvl~~~s~---------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D----g~Iriwd 182 (691)
T KOG2048|consen 123 -TILAIGCDDGVLYDFSI---------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID----GVIRIWD 182 (691)
T ss_pred -ceEEeecCCceEEEEec---------------CCceEEEEeecccccceEEEEEecCCccEEEecccC----ceEEEEE
Confidence 11122223344444433 2222222222332222222333444444 6676533 1255666
Q ss_pred CCCCeEEEcCCC-----CC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-C
Q psy17309 625 PECNQWTLIEPM-----RH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-D 696 (824)
Q Consensus 625 ~~~~~W~~~~~~-----p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 696 (824)
..+++=-.+-.| .. +....+...+.+...+.|-. ...|..+|....+-.+--..-.+- -.++++- +
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-----~G~V~FWd~~~gTLiqS~~~h~ad-Vl~Lav~~~ 256 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-----AGTVTFWDSIFGTLIQSHSCHDAD-VLALAVADN 256 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC-----CceEEEEcccCcchhhhhhhhhcc-eeEEEEcCC
Confidence 655442222211 11 12233445556666666654 346778887765422211111111 1223333 4
Q ss_pred CEEEEEccCCCCceeeEEEEEEC--CCCcEEeccC-CCCCccceeEEEEcC
Q psy17309 697 DMIFAIGGFNGVTTIYHVECYDE--KTDEWYEATD-MNIYRSALSACVIMG 744 (824)
Q Consensus 697 ~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~-~p~~r~~~~~~~~~~ 744 (824)
+.-++.+|.++ .+..|.. .+++|..... .-+++.--+.+++++
T Consensus 257 ~d~vfsaGvd~-----~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 257 EDRVFSAGVDP-----KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred CCeEEEccCCC-----ceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 35556667665 3445543 3446877632 233344445566655
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=88.38 E-value=18 Score=36.99 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (824)
.++..||..++.- ...+.....-..++..+..=.+.||.++ .+-+||..+..=..+..--.+.....-. ...
T Consensus 35 gslrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhh--hhheecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 3466777777621 1112222222334445555556677664 6889999998776665433332221111 234
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE------
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW------ 724 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W------ 724 (824)
..+|.||.+ ..+..+|+.... .+...-.+-.-++ ..+.+.++|+|+.+. .+.+||..+..=
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~-~~v~g~~LvVg~~~r-----~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYC-MDVSGNRLVVGTSDR-----KVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEE-EeccCCEEEEeecCc-----eEEEEEcccccchhhhcc
Confidence 456778875 568888887521 1111222222233 334555666666544 688898776421
Q ss_pred -------EeccCCCCCccceeEEEEcCcccee
Q psy17309 725 -------YEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 725 -------~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
+.+.-.| .+.++.+..++|++++-
T Consensus 174 S~lkyqtR~v~~~p-n~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 174 SSLKYQTRCVALVP-NGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence 1123344 56777788888887764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=49 Score=36.88 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=93.7
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|........+...+..-.. -...-+++.+++..... ....++.+|+.+.+=+.+...+... ......-+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCc-cceEECCC
Confidence 35688888765544444322221111 11223454444433221 1356999999888655555444221 11122224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ..+++.+|..+...+.+..-.. ........-+|+ |+......+ ...++.+|..+...+.+
T Consensus 251 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 251 GRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRV 323 (427)
T ss_pred CCEEEEEEccCC---CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEE
Confidence 4 5554433332 3578888988777666543221 111112222554 444332111 25788888877777665
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.... .........-+| .|+.....++ . ..++++|..+++.+.+.
T Consensus 324 t~~g-~~~~~~~~SpDG~~Ia~~s~~~g-~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 324 TFTG-SYNTSPRISPDGKLLAYISRVGG-A--FKLYVQDLATGQVTALT 368 (427)
T ss_pred ecCC-CCcCceEECCCCCEEEEEEccCC-c--EEEEEEECCCCCeEEcc
Confidence 4211 111111222244 4444433222 1 37899999888877663
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=87.99 E-value=4.8 Score=36.27 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=58.1
Q ss_pred EEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC---CCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEE-ECC
Q psy17309 646 IAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD---MYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECY-DEK 720 (824)
Q Consensus 646 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~y-d~~ 720 (824)
+.+||.+|-..-. .......+.+||..+.+|+.+.. .........++.++|+|-++.-..... ..-++|+. |.+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 4568888887765 23335789999999999998854 234556677888999998886544332 34578888 466
Q ss_pred CCcEEec
Q psy17309 721 TDEWYEA 727 (824)
Q Consensus 721 ~~~W~~~ 727 (824)
+.+|++.
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7899876
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=87.57 E-value=33 Score=35.12 Aligned_cols=132 Identities=12% Similarity=0.166 Sum_probs=70.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
..+..||..++.-.. .+...-.-..++..+..=.+.||.+ ..+-+||..+..=..+..--.+.....-. ...
T Consensus 35 gslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 457778877662211 1111111233455566556667754 56889999988766665433332221111 223
Q ss_pred EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 604 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
..+|.||++ .++..+|+.... .......+..-.++- +.+.+.|+|+.+ ..+..||+.+..
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~-v~g~~LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMD-VSGNRLVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEe-ccCCEEEEeecC-----ceEEEEEccccc
Confidence 456778876 578888987621 112222223333333 345555566543 578899987643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=55 Score=36.32 Aligned_cols=184 Identities=10% Similarity=-0.045 Sum_probs=100.4
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
.++|.+|+.+++=+.+...+. ........-+| +|.+.-...+ ..+++.+|..+..++.+...+..-... ...-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNG-NFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCcc-EECCC
Confidence 489999999887666665322 11112223344 5554433222 368999999999998886654311111 12223
Q ss_pred -CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCC---ccceEEEEeCCCCCE
Q psy17309 603 -GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMS---RMCNGEKYNPVTKTW 677 (824)
Q Consensus 603 -~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~---~~~~v~~yd~~~~~W 677 (824)
.+|+..-... ....++.+|..+++.+.+..-. .... ...-+|+ |.......... ....++.+|+.+..+
T Consensus 288 G~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 288 DKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCEEEEEECCC---CCceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 4666654332 2368999999998887664321 1222 2333444 44443322111 235899999999999
Q ss_pred EECCCCCCCCcceEEEEECCE-EEEEccCCCCceeeEEEEEECCCCc
Q psy17309 678 SQVPDMYNPRSNFAIEVIDDM-IFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 678 ~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
+.+.... ........-+|+ |++.... +. ...++.++.+.+.
T Consensus 362 ~~LT~~~--~~~~p~~SPDG~~I~f~~~~-~~--~~~L~~~~l~g~~ 403 (419)
T PRK04043 362 RRLTANG--VNQFPRFSSDGGSIMFIKYL-GN--QSALGIIRLNYNK 403 (419)
T ss_pred EECCCCC--CcCCeEECCCCCEEEEEEcc-CC--cEEEEEEecCCCe
Confidence 8886532 222222333555 4444322 21 2357777766543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.66 E-value=52 Score=36.38 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=111.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCC------CCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRR------QNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~------~~~~~~yd~~t 580 (824)
+++.++++=..++.....++.+|..+++...- .++.+.... ++.. ++..+++...+.... ...+++....+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 56666666444444556799999999854321 112222222 4444 335555555443322 56788888887
Q ss_pred CcEE--eecCCCcccC-ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC-----eEEEcCCCCCCCcceEEEEECCE
Q psy17309 581 NQWS--LIAPMNVERS-DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN-----QWTLIEPMRHRRSGVSCIAYHEC 651 (824)
Q Consensus 581 ~~W~--~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~ 651 (824)
..-+ .+-.-+.... ...+... +++..++.-..+.. .+.++..|.... .|..+.+- ..-....+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCE
Confidence 6543 2322222332 2233222 44444443333222 478899998875 78887542 22222334455899
Q ss_pred EEEEecCCCCCccceEEEEeCCCCC---EEE-CCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTKT---WSQ-VPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+|+.... ......+..+++.... |.. +.+-.....--.+...+++|++.-=.+ ....+.++|+.
T Consensus 290 ~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~ 357 (414)
T PF02897_consen 290 LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT
T ss_pred EEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC
Confidence 9998763 2334678888887765 664 433222233445566688988875332 24578999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2075|consensus | Back alignment and domain information |
|---|
Probab=85.58 E-value=2 Score=46.39 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=33.1
Q ss_pred hcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17309 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV 337 (824)
Q Consensus 302 ~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~ 337 (824)
..+..+||+.++.+|++|..+.|.+.|.+|+..+..
T Consensus 183 v~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~ 218 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLM 218 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999998864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=85.38 E-value=1.1e+02 Score=38.42 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=120.3
Q ss_pred CCceEEEEECCCCcEEEcccCCC----------CCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEec
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDP----------MGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 540 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~----------~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 540 (824)
..+.|..+|+....-..+..... ..-..-+++++. ++.|||.-..+ ..+..+|+.++.-+.+.
T Consensus 588 ~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tla 662 (1057)
T PLN02919 588 NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLA 662 (1057)
T ss_pred CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEe
Confidence 34567888876553333221000 001223566665 56788875422 46788888877655442
Q ss_pred cCC---------------CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC----------C---
Q psy17309 541 PMN---------------FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM----------N--- 590 (824)
Q Consensus 541 ~~~---------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~----------p--- 590 (824)
.-. .-..-+.+++. ++.+|+.... .+.+++||+.+.....+..- +
T Consensus 663 g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 663 GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTST 737 (1057)
T ss_pred ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccc
Confidence 110 00111234443 6789987542 36789999887765443210 0
Q ss_pred cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC---C-CCC--------------CC--cceEEEE-
Q psy17309 591 VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE---P-MRH--------------RR--SGVSCIA- 647 (824)
Q Consensus 591 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~-~p~--------------~r--~~~~~~~- 647 (824)
.-..-.++++. ++.|||.... .+.+.+||+.++..+.+. + .+. .. .-.+++.
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 00112223333 3469988643 367899998876533221 0 000 00 1112222
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC-----------CCcc-eEEEE-ECCEEEEEccCCCCceeeEE
Q psy17309 648 YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN-----------PRSN-FAIEV-IDDMIFAIGGFNGVTTIYHV 714 (824)
Q Consensus 648 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-----------~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v 714 (824)
-+|.|||....+ +.|.+||+.+...+.+..... .-.. .+++. -+|+|||....+. .|
T Consensus 813 ~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn-----~I 882 (1057)
T PLN02919 813 KDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS-----LI 882 (1057)
T ss_pred CCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC-----EE
Confidence 257899987643 679999998887765532110 0011 22232 2688999865433 68
Q ss_pred EEEECCCCc
Q psy17309 715 ECYDEKTDE 723 (824)
Q Consensus 715 ~~yd~~~~~ 723 (824)
.++|+.+++
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 889988865
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=85.10 E-value=27 Score=34.34 Aligned_cols=108 Identities=11% Similarity=0.258 Sum_probs=73.5
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
.++.=+..||-+ ..+..||.+|++-.. .+...-....++.++ ..+.+.|+++ .++..+|-.++.-+
T Consensus 69 ~Dnskf~s~GgD-----k~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 69 SDNSKFASCGGD-----KAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFE 136 (307)
T ss_pred ccccccccCCCC-----ceEEEEEcccCeeee--ecccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCC
Confidence 344445555533 568899999886422 111111222345554 4577777764 56889999999988
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.+..+...+.....+.+.++.+|.|..++ .+-.||+...+-.
T Consensus 137 PiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~ 178 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLS 178 (307)
T ss_pred ccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceee
Confidence 88888888999999999999999988776 4677887766543
|
|
| >KOG2716|consensus | Back alignment and domain information |
|---|
Probab=85.01 E-value=1 Score=44.36 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=47.7
Q ss_pred ceeEEeeecccchhhhheeecccceecCH--hhHHHHHHHHhhcChHhHHHHHHHHHhhcC
Q psy17309 246 NSVEKYNYTENQDKIEEKKLFERKLHITE--DNVASLLLATDFFCMSKAQDLCCDFIKRLT 304 (824)
Q Consensus 246 ~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~--~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l 304 (824)
+.|-| |=|+.-|..||.||-.|.+.|.+ ..+.+|+.-|.+|.++.|++.|..-+....
T Consensus 46 ~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 46 GCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred CcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Confidence 33444 34788899999999998888744 568899999999999999999999776653
|
|
| >KOG3473|consensus | Back alignment and domain information |
|---|
Probab=84.76 E-value=0.22 Score=40.66 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred eeeecceEEEE-c--ccccccccceeEEeeecccchhhhheee-----cccc------eecCHhhHHHHHHHHhhcC
Q psy17309 226 TAVHQDVIYAM-G--GYNGQRRQNSVEKYNYTENQDKIEEKKL-----FERK------LHITEDNVASLLLATDFFC 288 (824)
Q Consensus 226 ~~~~~~~~~~~-~--g~~~e~~~~~i~l~~~~~~~~~~ll~~~-----Yt~~------l~l~~~~v~~ll~~a~~~~ 288 (824)
.++.+..+++| . |.+.+.+.++++.+++.+..++-+.+|+ |++. ..|.++.+++||.+|++|.
T Consensus 35 ~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 35 HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 34455666666 2 5678889999999999999998887776 6664 4677899999999999875
|
|
| >KOG0511|consensus | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.5 Score=45.52 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=82.2
Q ss_pred ceEEEE-cccccccc-cce---eEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChH--h-HHHHHHHHHhh
Q psy17309 231 DVIYAM-GGYNGQRR-QNS---VEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMS--K-AQDLCCDFIKR 302 (824)
Q Consensus 231 ~~~~~~-~g~~~e~~-~~~---i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~--~-l~~~c~~~l~~ 302 (824)
.+|..| -|-|.|+. ..+ ..++.....+.+++++|+|+.+.++-.+-+.+++..|+++-+. + |+.+...-|.+
T Consensus 314 eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq 393 (516)
T KOG0511|consen 314 EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQ 393 (516)
T ss_pred HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHH
Confidence 455554 45555532 222 3455666778899999999999999999999999999999775 2 44444444444
Q ss_pred c---CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhh
Q psy17309 303 L---TTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIV 347 (824)
Q Consensus 303 ~---l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~ 347 (824)
+ ++.-|++.|+..+-......|.+-+.+|+..|+..+. ..+++.
T Consensus 394 ~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~-~dPe~~ 440 (516)
T KOG0511|consen 394 WLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLL-PDPEGD 440 (516)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc-CCchhh
Confidence 3 3445678888888888888888888888888887766 343443
|
|
| >KOG3545|consensus | Back alignment and domain information |
|---|
Probab=84.45 E-value=35 Score=34.06 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=107.8
Q ss_pred EEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC----CCCceEEeccCCCCcceEEEEE
Q psy17309 478 ETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA----VTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 478 ~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
.......+.|.+ . ++ ++ ++++|+..+..+ ..+.-|.. ..+.|...-.+|.+-.+.+-++
T Consensus 13 ~~~~~~~GsWmr--D-pl--~~--------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 13 KTAGPRFGAWMR--D-PL--PA--------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred Eeeccccceeec--C-CC--cc--------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 344555677876 1 11 22 577888854432 33444433 3445666667777777788889
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCc---EEeecCCC------c---ccCceEEEEECCEEEEEcccCCCCcCCceE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMN------V---ERSDASATTLQGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p------~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 621 (824)
++|.+|.-.+ .+..+-+||..+.. |..++.+. - +....-.++-..-|+|+=-..+....--+.
T Consensus 76 ynGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~s 150 (249)
T KOG3545|consen 76 YNGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLS 150 (249)
T ss_pred EcceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEee
Confidence 9999988764 34678899988843 44444321 1 122223344444455552222211122236
Q ss_pred EEeCCC----CeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceE-EEEeCCCCCEEECCCCCCCC--cceEEEE
Q psy17309 622 VYDPEC----NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG-EKYNPVTKTWSQVPDMYNPR--SNFAIEV 694 (824)
Q Consensus 622 ~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~p~~r--~~~~~~~ 694 (824)
+.||.+ .+|..- .+ .+....+..+-|.||++-...... ..+ +.||..+++-..+ ++|.+. ...++.-
T Consensus 151 kLdp~tl~~e~tW~T~--~~-k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~id 224 (249)
T KOG3545|consen 151 KLDPETLEVERTWNTT--LP-KRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERI-DLPFPNPYSYATMID 224 (249)
T ss_pred ccCHHHhheeeeeccc--cC-CCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceecc-cccccchhhhhhccC
Confidence 677743 356322 22 233344556678999987754332 223 7899988876444 344332 2233332
Q ss_pred E---CCEEEEE
Q psy17309 695 I---DDMIFAI 702 (824)
Q Consensus 695 ~---~~~i~v~ 702 (824)
. +.+||+.
T Consensus 225 YNP~D~~LY~w 235 (249)
T KOG3545|consen 225 YNPRDRRLYAW 235 (249)
T ss_pred CCcccceeeEe
Confidence 2 6788887
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=84.39 E-value=64 Score=34.73 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=117.4
Q ss_pred CCEEEEEccCCCCCCCceEEEEE--CCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCC
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYD--TRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTK 534 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~ 534 (824)
...||+..... .....+..|. +.+.+...+...+. ....-+.+++. +..||+.- +. ...+..|+...+
T Consensus 48 ~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~ 119 (345)
T PF10282_consen 48 GRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDD 119 (345)
T ss_dssp SSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTT
T ss_pred CCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCC
Confidence 35677775533 2334454554 44467766533221 12222223332 45566543 21 245667766653
Q ss_pred -ceEEec---------cC---CCCcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCCc--EEeecC--CCcccCc
Q psy17309 535 -VWKEIA---------PM---NFKRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAP--MNVERSD 595 (824)
Q Consensus 535 -~W~~~~---------~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~--~p~~r~~ 595 (824)
+-.... +- ...-.-|.+... + ..+|+..= -.+.++.|+..... .+.... +|..-.-
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 222211 11 122334555555 3 46777531 24778888887765 554332 2222221
Q ss_pred eEEEEE--CCEEEEEcccCCCCcCCceEEEeCC--CCeEEEcC---CCCCC---CcceEEEEE---CCEEEEEecCCCCC
Q psy17309 596 ASATTL--QGKIYITGGFNGHNCLNSCEVYDPE--CNQWTLIE---PMRHR---RSGVSCIAY---HECIYVIGGFNGMS 662 (824)
Q Consensus 596 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~---~~p~~---r~~~~~~~~---~~~iyv~GG~~~~~ 662 (824)
.-++.. +..+||+.-.. +.+.+|+.. +..++.+. .+|.. ....+...+ +..||+.-..
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---- 265 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---- 265 (345)
T ss_dssp EEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----
T ss_pred cEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----
Confidence 123333 35899986533 455555544 66766553 44332 112333333 3457776532
Q ss_pred ccceEEEEeC--CCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 663 RMCNGEKYNP--VTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 663 ~~~~v~~yd~--~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+.|.+|+. .+.+-+.+...+..-.......+ +++.+++++...+. -.++..|+++..++...
T Consensus 266 -~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 266 -SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCCcEEEec
Confidence 356777776 45566665444432222222333 45444444433322 24555577888998874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=83.43 E-value=39 Score=36.30 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=79.4
Q ss_pred eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEe
Q psy17309 548 YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 548 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
.++++++ +|.|+..|-.+ ..+-+||..... .++.+|..-.-.....+ ||+..+.+-.+ ..|-+||
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEE
Confidence 4445555 66777666432 457788888876 66666653333333333 55554544322 2388899
Q ss_pred CCCCeEEEcCCCCCCC-cceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECC--EE
Q psy17309 625 PECNQWTLIEPMRHRR-SGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD--MI 699 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r-~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~--~i 699 (824)
....+ .....+.+- .......++ |...+++|. .-.|+.|+-.+.+|+++..++........+.++. +.
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred ehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 87655 233222222 233444453 677777764 2467888888999999987665443344555543 34
Q ss_pred EEEccCC
Q psy17309 700 FAIGGFN 706 (824)
Q Consensus 700 ~v~GG~~ 706 (824)
+..||.+
T Consensus 491 l~s~smd 497 (506)
T KOG0289|consen 491 LASTSMD 497 (506)
T ss_pred Eeeccch
Confidence 4444443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=77 Score=34.77 Aligned_cols=195 Identities=9% Similarity=0.101 Sum_probs=94.0
Q ss_pred CCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC----CC------------
Q psy17309 483 RADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN----FK------------ 545 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~------------ 545 (824)
....|..++..+.. +........+ ++.++++|.. ..+++-+-.-.+|+.+...+ ..
T Consensus 164 gG~tW~~~~~~~~~-p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~ 236 (398)
T PLN00033 164 GGETWERIPLSPKL-PGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASY 236 (398)
T ss_pred CCCCceECccccCC-CCCceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccce
Confidence 45689886543211 2122333344 4567777732 23555555567898762111 00
Q ss_pred --cceEEEEE-ECCEEEEEecccCCCCCCeEEE-EeCCCCcEEeecCCCcccCceEE-EEECCEEEEEcccCCCCcCCce
Q psy17309 546 --RCYVSTAV-HQDVIYAMGGYNGQRRQNSVEK-YNYTENQWSLIAPMNVERSDASA-TTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 546 --r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-..+.+.. -++.++++|-. ..+++ .|.....|+.+..-... .-.++ ...++.++++|... .+
T Consensus 237 y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~~~~~~~~~-~l~~v~~~~dg~l~l~g~~G------~l 303 (398)
T PLN00033 237 YTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQPHNRASAR-RIQNMGWRADGGLWLLTRGG------GL 303 (398)
T ss_pred eccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceEEecCCCcc-ceeeeeEcCCCCEEEEeCCc------eE
Confidence 11122222 24456666532 22333 34444458877543333 32333 23478888876432 12
Q ss_pred EEEeCCCC-----eEEEcCCCCCCCcceEEE-EE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEE
Q psy17309 621 EVYDPECN-----QWTLIEPMRHRRSGVSCI-AY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAI 692 (824)
Q Consensus 621 ~~yd~~~~-----~W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~ 692 (824)
..-+.... +|..+.. +..+.....+ .. ++.+++.|.. ..+..-...-++|+.... -+.+-..+.+
T Consensus 304 ~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v 376 (398)
T PLN00033 304 YVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGS------GILLRSTDGGKSWKRDKGADNIAANLYSV 376 (398)
T ss_pred EEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECC------CcEEEeCCCCcceeEccccCCCCcceeEE
Confidence 22222223 3444432 2222333333 33 6788888864 245555566789999753 2222223344
Q ss_pred EEE-CCEEEEEcc
Q psy17309 693 EVI-DDMIFAIGG 704 (824)
Q Consensus 693 ~~~-~~~i~v~GG 704 (824)
... +++.|+.|-
T Consensus 377 ~f~~~~~g~~~G~ 389 (398)
T PLN00033 377 KFFDDKKGFVLGN 389 (398)
T ss_pred EEcCCCceEEEeC
Confidence 433 578888873
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=83.06 E-value=51 Score=32.56 Aligned_cols=187 Identities=11% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEEC--CEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.-+..||- -..++.||..|++-.+- ....-...-++.++ ..+.+-|+.+ .++..+|..+++.+.
T Consensus 70 Dnskf~s~Gg-----Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 70 DNSKFASCGG-----DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEP 137 (307)
T ss_pred cccccccCCC-----CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCc
Confidence 4444555552 25689999998763221 00011111233343 3566666654 678899999999998
Q ss_pred ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccc
Q psy17309 586 IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC 665 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 665 (824)
+.-+...+.+...+.+.+...|.|..++ ++-.||...++-.. .-+..|... ....-++.-.++|-.+ .
T Consensus 138 iQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~s-Dy~g~pit~-vs~s~d~nc~La~~l~-----s 205 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLSS-DYFGHPITS-VSFSKDGNCSLASSLD-----S 205 (307)
T ss_pred cchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceeeh-hhcCCccee-EEecCCCCEEEEeecc-----c
Confidence 8889999999999999998888876664 57789987765321 112222111 1112244444555432 2
Q ss_pred eEEEEeCCCCCEEEC-CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 666 NGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 666 ~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+...|-++.+--.. ......-+..-++..+..-.|++|...+ .++.||....
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG----~Vy~wdLvd~ 259 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG----KVYFWDLVDE 259 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc----eEEEEEeccc
Confidence 344555555431110 0000111112234444445556665332 5788887654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=71 Score=33.97 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=104.6
Q ss_pred ceEEEEECC-CCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceE
Q psy17309 475 DFVETYDTR-ADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~-~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~ 549 (824)
..+..|+.. ..++..+...+.+ ..-+.++.. +..+|+..- . .+.+..||..++. ...+...+....-|
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~--~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~ 129 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLP--GSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCH 129 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCC--CCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCccc
Confidence 556667765 3455543222221 112233333 445666542 1 2567777775321 12222222222234
Q ss_pred EEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCC-cEEeec----CCCcccCceEEEEE--CCEEEEEcccCCCCcCCce
Q psy17309 550 STAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIA----PMNVERSDASATTL--QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 550 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v 620 (824)
.++.. + ..+|+..- ..+.+.+||..+. ...... ..+....-+.++.. +..+|+.... .+++
T Consensus 130 ~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v 199 (330)
T PRK11028 130 SANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSV 199 (330)
T ss_pred EeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEE
Confidence 44333 3 46666542 2367899998763 222110 11222112223333 3467776332 3567
Q ss_pred EEEeCC--CCeEEE---cCCCC----CCCcceEEEEE-C-CEEEEEecCCCCCccceEEEEeC--CCCCEEECCCCC---
Q psy17309 621 EVYDPE--CNQWTL---IEPMR----HRRSGVSCIAY-H-ECIYVIGGFNGMSRMCNGEKYNP--VTKTWSQVPDMY--- 684 (824)
Q Consensus 621 ~~yd~~--~~~W~~---~~~~p----~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p--- 684 (824)
.+||.. +++.+. +..+| .++....++.. + ..+|+.... .+.+.+|+. ....++.+...+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~ 274 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTET 274 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccc
Confidence 777765 444433 33333 23322222222 3 457775321 245666655 344555554332
Q ss_pred CCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCc
Q psy17309 685 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYR 734 (824)
Q Consensus 685 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 734 (824)
.||. .....-+..||+.+..++ .-.++..|.+++.++.+...+...
T Consensus 275 ~p~~-~~~~~dg~~l~va~~~~~---~v~v~~~~~~~g~l~~~~~~~~g~ 320 (330)
T PRK11028 275 QPRG-FNIDHSGKYLIAAGQKSH---HISVYEIDGETGLLTELGRYAVGQ 320 (330)
T ss_pred cCCc-eEECCCCCEEEEEEccCC---cEEEEEEcCCCCcEEEccccccCC
Confidence 2332 111111446666543222 123444466777888876655433
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=82.58 E-value=62 Score=33.27 Aligned_cols=217 Identities=12% Similarity=0.153 Sum_probs=104.4
Q ss_pred CCCcEEEccc-CCCC--CCCceeEEEEE--CCEEEEEe--ecCCCcc--cceEEEEECC-CCceEEeccCCCC-------
Q psy17309 483 RADRWVKIDQ-VDPM--GPRAYHGTAVI--GYNIYVIG--GFDGNEY--YNSCRCFNAV-TKVWKEIAPMNFK------- 545 (824)
Q Consensus 483 ~~~~W~~~~~-~~~~--~~r~~~~~~~~--~~~lyv~G--G~~~~~~--~~~~~~yd~~-~~~W~~~~~~~~~------- 545 (824)
...+|..... ...+ ..+....+.+. +++|+++. +...... ..-.+..... -.+|+....++..
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 4467987421 1111 22333333333 78888886 3222111 1112344444 4579876543321
Q ss_pred -cceEEEEEECCEEEEEecccCCCCCCeEEEEeCC-CCcEEeecCCCc-ccCceEEEE-E-CCEEEEEcccCCCCcCCce
Q psy17309 546 -RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT-ENQWSLIAPMNV-ERSDASATT-L-QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 546 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~p~-~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~v 620 (824)
-....+..-+|.+++..=............|+.. -.+|+.....+. ......+.+ . +|+|+++--..... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 1122234447888877211111112334445444 466988876642 233333333 3 67888875432111 223
Q ss_pred EEEeCC-CCeEEEcC--CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC---CCcce-EE
Q psy17309 621 EVYDPE-CNQWTLIE--PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN---PRSNF-AI 692 (824)
Q Consensus 621 ~~yd~~-~~~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~~-~~ 692 (824)
..+..+ -.+|+... .+|.+.....++.+ +++++++.........-.+..-.....+|+....+.. ....+ .+
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 334433 34799865 45666655555554 5788888873222112233333334778987644322 22333 44
Q ss_pred EEE-CCEEEE
Q psy17309 693 EVI-DDMIFA 701 (824)
Q Consensus 693 ~~~-~~~i~v 701 (824)
+.. +++|+|
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 455 578886
|
... |
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=81.65 E-value=24 Score=38.06 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred eeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce--EEEEEE-CCEEEEEecccCCCCCCeEEEEe
Q psy17309 501 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY--VSTAVH-QDVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 501 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd 577 (824)
.++.+..+.-.|++|| .....+|++...++.--.+- .+.+. -+.... +|..++.||.++. |..|+
T Consensus 84 v~al~s~n~G~~l~ag----~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~-----V~vW~ 151 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG----TISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGA-----VLVWL 151 (476)
T ss_pred eeeeecCCCceEEEee----cccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCcc-----EEEEE
Confidence 4555555666777777 22356888888876421111 11111 122222 6677777876533 43333
Q ss_pred CCCCc--EEeecCCC-cccCceEEEEECCEEEE-EcccCCC----CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-
Q psy17309 578 YTENQ--WSLIAPMN-VERSDASATTLQGKIYI-TGGFNGH----NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY- 648 (824)
Q Consensus 578 ~~t~~--W~~~~~~p-~~r~~~~~~~~~~~lyv-~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 648 (824)
..+-- -..-.+.| .....|++.+.+ +++ .||.+.. ..-..+-+||...+.-- .....|+.-++++.-
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--lti~fp~si~av~lDp 227 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--LTITFPSSIKAVALDP 227 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEeccceee--EEEecCCcceeEEEcc
Confidence 21100 00001122 223455555443 222 2333321 22356778888887532 222233333333332
Q ss_pred CCEEEEEecCCCCCccceE------------EEEeCCCCCEEECCCCCCCC--cceEE--EEECCEEEEEccCCCCceee
Q psy17309 649 HECIYVIGGFNGMSRMCNG------------EKYNPVTKTWSQVPDMYNPR--SNFAI--EVIDDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v------------~~yd~~~~~W~~~~~~p~~r--~~~~~--~~~~~~i~v~GG~~~~~~~~ 712 (824)
.++.+.+|+..+.-....+ ..+++...+ +..+...+ ..-++ ...++.+++.|+.++
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~---~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg----- 299 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ---INVLVGHENESAITCLAISTDGTLLLSGDEDG----- 299 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccce---eeeeccccCCcceeEEEEecCccEEEeeCCCC-----
Confidence 2444445654332211111 111111111 11111111 12222 334999999999877
Q ss_pred EEEEEECCCCcE
Q psy17309 713 HVECYDEKTDEW 724 (824)
Q Consensus 713 ~v~~yd~~~~~W 724 (824)
.+.++|+.+.+-
T Consensus 300 ~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 300 KVCVWDIYSKQC 311 (476)
T ss_pred CEEEEecchHHH
Confidence 577788877654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=1e+02 Score=34.38 Aligned_cols=185 Identities=6% Similarity=-0.077 Sum_probs=95.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++-+.+...+..-.. ....-+| +|++.....+ ..+++.+|..+...+.+..-+..-.. ....-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTE-PTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCc-eEECCC
Confidence 5789999988876666554332111 1222244 4555433222 24699999999887776543321111 111224
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
|+.+++....+ ....++.+|+.+..-+.+..... ........-+|+.+++.+.... ...++.+|+.+.+++.+..
T Consensus 298 G~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 298 SQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CCEEEEEeCCC--CCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 54333332211 12478888988876666532211 1111222234544444332221 2468899999999888764
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 683 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 683 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.. ........-+++.+++.+.++.. ..+++.+.+..
T Consensus 373 ~~--~~~~p~~SpDG~~i~~~s~~~~~--~~l~~~~~~G~ 408 (429)
T PRK03629 373 TF--LDETPSIAPNGTMVIYSSSQGMG--SVLNLVSTDGR 408 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCc--eEEEEEECCCC
Confidence 21 11122233477766666554332 24566665443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.3e+02 Score=35.77 Aligned_cols=250 Identities=10% Similarity=-0.027 Sum_probs=121.6
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCC-cccceEEEEECCCCce--
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGN-EYYNSCRCFNAVTKVW-- 536 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W-- 536 (824)
..++++-...+.....+...|+.++.... .+......+++.. ++.-+++...+.. ....+++++++.+..-
T Consensus 139 ~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d 213 (686)
T PRK10115 139 TIMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CEEEEEecCCCcEEEEEEEEECCCCCCCC-----ccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC
Confidence 34555543334444556667766553111 1111122334444 4443334333221 2347899999988732
Q ss_pred EEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeC--CCCcEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 537 KEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 537 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
..+-.-+........... +++..++....+ ..+.++.|+. .+..|..+.+.+.... ......++.+|+.--.+
T Consensus 214 ~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~- 289 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRH- 289 (686)
T ss_pred eEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCC-
Confidence 122111112222233333 444334444322 3467788873 3344433322222211 22334467888874322
Q ss_pred CCcCCceEEEeCC-CCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 614 HNCLNSCEVYDPE-CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 614 ~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
.....+...+.. +.+|+.+-+....+.--.....++.|++..-.++ ...++++|+.+.....+. ++.+... +.
T Consensus 290 -~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~ 363 (686)
T PRK10115 290 -GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TW 363 (686)
T ss_pred -CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-ee
Confidence 223346666766 5789888654223333344555788877764332 356788887666655544 1222222 11
Q ss_pred EEE----C-CEEEE-EccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 693 EVI----D-DMIFA-IGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 693 ~~~----~-~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
... + +.+++ +.+.. .-.+++.||+.+++|+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 364 IAYNPEPETSRLRYGYSSMT---TPDTLFELDMDTGERRVLK 402 (686)
T ss_pred ecccCCCCCceEEEEEecCC---CCCEEEEEECCCCcEEEEE
Confidence 111 1 33333 22222 2357999999999988774
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=80.49 E-value=13 Score=33.40 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=56.6
Q ss_pred EECCEEEEEccCCCCcccceEEEEEccCCceeEeccc---CCCcceeEEEEECCEEEEEcCcCCCC-CCCcEEEE-ECCC
Q psy17309 92 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM---NFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKY-NYTE 166 (824)
Q Consensus 92 ~~~~~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~y-d~~~ 166 (824)
.+||-+|-..-. .....+-+.+||+.+.+|+.+..+ .........+.++|+|-++.-..... ..-++|+. |..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 567777765543 334457799999999999988643 34566778888999998876544322 23477777 4567
Q ss_pred CeEEEecc
Q psy17309 167 NQWSLIAP 174 (824)
Q Consensus 167 ~~W~~~~~ 174 (824)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78987743
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=80.19 E-value=75 Score=32.66 Aligned_cols=175 Identities=10% Similarity=0.149 Sum_probs=87.6
Q ss_pred CCEEEEEe--cccCCC-CCCe-EEEEeCC-CCcEEeecCCCcc------cCceE--EEEECCEEEEEcccCC-CCcCCce
Q psy17309 555 QDVIYAMG--GYNGQR-RQNS-VEKYNYT-ENQWSLIAPMNVE------RSDAS--ATTLQGKIYITGGFNG-HNCLNSC 620 (824)
Q Consensus 555 ~~~iyv~G--G~~~~~-~~~~-~~~yd~~-t~~W~~~~~~p~~------r~~~~--~~~~~~~lyv~GG~~~-~~~~~~v 620 (824)
+|+|+++- +..... .... .+..... -.+|+....++.. ..... +..-+|++++. .+.. .......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-EeeccccCcceE
Confidence 78988886 222111 1112 2344444 4689887554322 11122 33348888887 2211 1122334
Q ss_pred EEEeCC-CCeEEEcCCCCCC-CcceEEE-EE-CCEEEEEecCCCCCccceEEEEeCC-CCCEEECC--CCCCCCcceEEE
Q psy17309 621 EVYDPE-CNQWTLIEPMRHR-RSGVSCI-AY-HECIYVIGGFNGMSRMCNGEKYNPV-TKTWSQVP--DMYNPRSNFAIE 693 (824)
Q Consensus 621 ~~yd~~-~~~W~~~~~~p~~-r~~~~~~-~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~--~~p~~r~~~~~~ 693 (824)
..|..+ -.+|+.....+.. .....+. .. +|+|+++--.. ... .....+... -.+|+... .+|.+.....++
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~-~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND-DIYISRSTDGGRTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST-EEEEEEESSTTSS-EEEEEEECSSCCEEEEEE
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC-cEEEEEECCCCCcCCCceecccCcccCCceEE
Confidence 445544 4569988766422 3333333 23 67898887542 111 233344443 46899864 456665555555
Q ss_pred EE-CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCC
Q psy17309 694 VI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNI 732 (824)
Q Consensus 694 ~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 732 (824)
.+ +++++++.........-.+.+-.-...+|.....+..
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEE
T ss_pred EcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeC
Confidence 54 6788888773222222234443444789987644433
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 824 | ||||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 3e-51 | ||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 1e-13 | ||
| 3vng_A | 309 | Crystal Structure Of Keap1 In Complex With Syntheti | 1e-45 | ||
| 1u6d_X | 308 | Crystal Structure Of The Kelch Domain Of Human Keap | 5e-45 | ||
| 2dyh_A | 318 | Crystal Structure Of The Keap1 Protein In Complexed | 8e-45 | ||
| 1x2j_A | 316 | Structural Basis For The Defects Of Human Lung Canc | 9e-45 | ||
| 1zgk_A | 308 | 1.35 Angstrom Structure Of The Kelch Domain Of Keap | 2e-40 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 7e-37 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 3e-36 | ||
| 3ii7_A | 306 | Crystal Structure Of The Kelch Domain Of Human Klhl | 4e-19 | ||
| 3ii7_A | 306 | Crystal Structure Of The Kelch Domain Of Human Klhl | 3e-18 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 2e-16 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 1e-11 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 1e-15 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 2e-12 | ||
| 3hve_A | 256 | Structures Of Spop-Substrate Complexes: Insights In | 9e-11 | ||
| 4ap2_A | 297 | Crystal Structure Of The Human Klhl11-cul3 Complex | 2e-06 | ||
| 3i3n_A | 279 | Crystal Structure Of The Btb-Back Domains Of Human | 4e-06 |
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 | Back alignment and structure |
|
| >pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 | Back alignment and structure |
|
| >pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 | Back alignment and structure |
|
| >pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306 | Back alignment and structure |
|
| >pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Gigaxoninbtb3-Box Length = 256 | Back alignment and structure |
|
| >pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 | Back alignment and structure |
|
| >pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-122
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 9/297 (3%)
Query: 453 ARPRV-PHEILFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 509
R R+ +E+L +GG+ S SP D VE YD + W + + R Y + +
Sbjct: 7 TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS---FLPSITRKRRYVASVSLHD 63
Query: 510 NIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 566
IYVIGG+DG +S C + VW +APMN +R D+IY GG++G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 567 QRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 626
RR S+E+Y+ +QWS++ M R A G IY GG++G N LNS E YDP
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 627 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686
WT + PM +RSG ++ IYV+GGF+G + + + E YN T +W+ V M P
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 743
R V+ ++AI G++G + + +ECYD D W T M R CV+
Sbjct: 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 5e-90
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 5/252 (1%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 556
PR + V+GGF + + ++ T+ W + + KR YV++ D
Sbjct: 5 PRTRARLGANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63
Query: 557 VIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMNVERSDASATTLQGKIYITGGFNG 613
IY +GGY+G+ R +SVE +YT ++ W +APMNV R A ATTL IY++GGF+G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
S E YDP +QW+++ M+ R G + IY +GG++G++ + + EKY+P
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
T W+ V M RS + +++D I+ +GGF+G + VE Y+ +TD W T M
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 734 RSALSACVIMGL 745
R + A V+ G
Sbjct: 244 RCYVGATVLRGR 255
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 5e-87
Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 1/237 (0%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 520
++ IGG+ G S VE D AD V PM R G +G IYV GGFDG+
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS 124
Query: 521 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 580
+ S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184
Query: 581 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR 640
W+ + PM +RS A L IY+ GGF+G L+S E Y+ + WT + M R
Sbjct: 185 GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 641 SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 697
V +Y I G++G S + + E Y+P+ +W V M R + + V+ +
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 7e-75
Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 39 ARPRV-PHEILFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 95
R R+ +E+L +GG+ S SP D VE YD + W + + R Y + +
Sbjct: 7 TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS---FLPSITRKRRYVASVSLHD 63
Query: 96 NIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 152
IYVIGG+DG +S C + VW +APMN +R D+IY GG++G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 153 QRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAV 207
RR S+E+Y+ +QWS++ M + V + IY +GG+DG NS ++
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 208 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
T W + PM KR A+ D IY +GG++G +SVE YN +
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 2e-68
Identities = 72/219 (32%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++ IGG+ G S VE D AD V PM R G +G IYV GGFDG+
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS 124
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
+ S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184
Query: 167 NQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
W+ + PM + N IYV+GGFDG + +S +N T W + M
Sbjct: 185 GHWTNVTPMATKRSGAGV---ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241
Query: 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
RCYV V + +YA+ GY+G +S+E Y+ +
Sbjct: 242 TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 9e-65
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 5/207 (2%)
Query: 542 MNFKRCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMNVERSDASATT 600
M R + +V+ +GG+ Q+ + VEKY+ +WS + + +R ++ +
Sbjct: 2 MQGPRTRARLGAN-EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQ---WTLIEPMRHRRSGVSCIAYHECIYVIGG 657
L +IY+ GG++G + L+S E D ++ W + PM RR + IYV GG
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECY 717
F+G R + E+Y+P WS + DM R + V +I+ +GG++G+ + VE Y
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 718 DEKTDEWYEATDMNIYRSALSACVIMG 744
D T W T M RS ++
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLND 207
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 2e-55
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++ GG+ G +E YD D+W + M R G V IY +GG+DG
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTAREGAGLVVASGVIYCLGGYDGL 171
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
NS ++ T W + PM KR A+ D IY +GG++G +SVE YN
Sbjct: 172 NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRT 231
Query: 167 NQWSLIAPMN--------CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
+ W+ + M +++ +Y I G+DGN +S C++ + W+ + M
Sbjct: 232 DSWTTVTSMTTPRCYVGATVLRG---RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288
Query: 219 FKRCYVSTAVHQD 231
+RC V ++
Sbjct: 289 TQRCDAGVCVLRE 301
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
PR + V+GGF + + ++ T+ W + + KR YV++ D
Sbjct: 5 PRTRARLGANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMN---CMIQNVTYN--IYVIGGFDG 194
IY +GGY+G+ R +SVE +YT ++ W +APMN + T IYV GGFDG
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 195 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT 254
+ + S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 255 ENQ 257
Sbjct: 184 TGH 186
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 128 MNFKRCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMN--------CM 178
M R + +V+ +GG+ Q+ + VEKY+ +WS + +
Sbjct: 2 MQGPRTRARLGAN-EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 179 IQNVTYNIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYA 235
+ + IYVIGG+DG +S C + VW +APMN +R D+IY
Sbjct: 61 LHD---RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 236 MGGYNGQRRQNSVEKYNYTENQ 257
GG++G RR S+E+Y+ +Q
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQ 139
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 186 IYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 244
+ V+GGF + + ++ T+ W + + KR YV++ D IY +GGY+G+ R
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSR 76
Query: 245 QNSVEKYNYTENQD 258
+SVE +YT ++D
Sbjct: 77 LSSVECLDYTADED 90
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-120
Identities = 90/299 (30%), Positives = 145/299 (48%), Gaps = 11/299 (3%)
Query: 454 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 509
R R P +++ +GG VE YD + +RW QV + R G +
Sbjct: 7 RLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWH---QVAELPSRRCRAGMVYMAG 62
Query: 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 569
++ +GGF+G+ + ++ V W +A M +R + AV ++YA+GG++G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG--HNCLNSCEVYDPEC 627
+SVE YN N+W +APMN RS + G +Y GG++ CL++ E Y+
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 628 NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687
N+WT I M RRSG + +Y +GG +G + E Y+P T W QV DM R
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242
Query: 688 SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW-YEATDMNIYRSALSACVIMGL 745
N + ++ +++ +GG +G + VE Y+ TD+W ++ M+ RS VI
Sbjct: 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKR 301
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 1e-91
Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 2/252 (0%)
Query: 496 MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555
M R T + + V+ G + S C++ + W ++A + +RC
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 615
+++A+GG+NG R +V+ Y+ ++QW+ +A M RS A L G +Y GGF+G
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121
Query: 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC--NGEKYNPV 673
L+S E Y+ + N+W + PM RRS V +Y +GG++ SR C E YN
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
T W+ + +M RS + V++++++A+GG +G VE YD T+ W + DMN+
Sbjct: 182 TNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241
Query: 734 RSALSACVIMGL 745
R C + GL
Sbjct: 242 RRNAGVCAVNGL 253
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 3e-85
Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 7/242 (2%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 520
+FA+GG++G V++YD D+W V M R+ G AV+ +Y +GGFDG+
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWT---SVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 521 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKYNY 578
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 579 TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 638
T N+W+ IA M+ RS A L +Y GG +G S EVYDP N W + M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDD 697
R A + +YV+GG +G + + E YNP T W+ V M RS + VID
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Query: 698 MI 699
+
Sbjct: 301 RL 302
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 2e-73
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 40 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 95
R R P +++ +GG VE YD + +RW QV + R G +
Sbjct: 7 RLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWH---QVAELPSRRCRAGMVYMAG 62
Query: 96 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 155
++ +GGF+G+ + ++ V W +A M +R + AV ++YA+GG++G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 156 QNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDG--NEYYNSCRCFNAVT 208
+SVE YN N+W +APMN + +Y +GG+D + ++ C+NA T
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
W IA M+ +R V +++YA+GG++G + SVE Y+ T N
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 4e-67
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
+FA+GG++G V++YD D+W V M R+ G AV+ +Y +GGFDG+
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWT---SVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKYNY 164
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 165 TENQWSLIAPMN---CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF 219
T N+W+ IA M+ N +Y +GG DG S ++ T W+++A MN
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 220 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R ++Y +GG +G SVE YN T ++
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 4e-54
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 12/195 (6%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG- 105
L+A+GG+ G + VE Y+ +++ W V PM R+ G V+G +Y +GG+D
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRRSSVGVGVVGGLLYAVGGYDVA 167
Query: 106 -NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY 164
+ ++ C+NA T W IA M+ +R V +++YA+GG++G + SVE Y+
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227
Query: 165 TENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MN 218
T N W +A MN +N N +YV+GG DG+ S +N T W ++ M+
Sbjct: 228 TTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 219 FKRCYVSTAVHQDVI 233
R Y V +
Sbjct: 288 TGRSYAGVTVIDKRL 302
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 7e-50
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 82 MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 141
M R T + + V+ G + S C++ + W ++A + +RC
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 142 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFD 193
+++A+GG+NG R +V+ Y+ ++QW+ +A M ++ +Y +GGFD
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG---LLYAVGGFD 118
Query: 194 GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKY 251
G+ +S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE Y
Sbjct: 119 GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY 178
Query: 252 NYTENQ 257
N T N+
Sbjct: 179 NATTNE 184
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-118
Identities = 103/298 (34%), Positives = 150/298 (50%), Gaps = 14/298 (4%)
Query: 454 RPRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI 507
PR H +++ GG+ S ++E Y+ W+ ++ + PR+ V+
Sbjct: 14 VPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWL---RLADLQVPRSGLAGCVV 69
Query: 508 GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 563
G +Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 564 YNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVY 623
+G NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 189
Query: 624 DPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 683
PE N+W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249
Query: 684 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
+ RS I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 250 KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 3e-87
Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 6/252 (2%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDV 557
PR H V IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHAPKVGRL-IYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 558 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613
+YA+GG N G ++++ YN NQWS APM+V R+ + G IY GG +G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
NS E Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
W + M RS + V+ + I+A GG++G + VE YD +T+ W M
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252
Query: 734 RSALSACVIMGL 745
RSAL V G
Sbjct: 253 RSALGITVHQGR 264
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 7e-72
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 19/233 (8%)
Query: 40 RPRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI 93
PR H +++ GG+ S ++E Y+ W+ ++ + PR+ V+
Sbjct: 14 VPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWL---RLADLQVPRSGLAGCVV 69
Query: 94 GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 149
G +Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 150 YNGQRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCF 204
+G NSVE+Y ++W L+APM N +Y +GGFDG NS C+
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 189
Query: 205 NAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
W+ I MN R V + IYA GGY+GQ + NSVE+Y+
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 8e-67
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 34 PTPEIARPRVPHEI------LFAIGGWS----GGSPTDFVETYDTRADRWVKIDQVDPMG 83
++ PR L+A+GG + G + + ++ Y+ ++W PM
Sbjct: 53 RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP---CAPMS 109
Query: 84 -PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
PR G VI +IY +GG G ++NS + W +APM +R V AV
Sbjct: 110 VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 169
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN---CMIQNVTYN--IYVIGGFDGNEY 197
++YA+GG++G R NS E Y N+W +I MN + IY GG+DG +
Sbjct: 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 229
Query: 198 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
NS ++ T+ W +APM +R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 230 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 1e-56
Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++A+GG G + VE Y+ D W V PM R G AV+ +Y +GGFDG
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
NS C+ W+ I MN R V + IYA GGY+GQ + NSVE+Y+
Sbjct: 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 240
Query: 167 NQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKR 221
W+ +APM + IYV+GG+DG+ + +S C++ T W E+ M R
Sbjct: 241 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 300
Query: 222 CYVSTAV 228
V AV
Sbjct: 301 SGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 163 NYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC 222
++ + S + P V IY GG+ + + +N W +A + R
Sbjct: 4 HHHHHHSSGLVPRGSHAPKVGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRS 62
Query: 223 YVSTAVHQDVIYAMGGYN----GQRRQNSVEKYNYTENQ 257
++ V ++YA+GG N G ++++ YN NQ
Sbjct: 63 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 336 bits (864), Expect = e-109
Identities = 72/313 (23%), Positives = 113/313 (36%), Gaps = 20/313 (6%)
Query: 454 RPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGYNI 511
RPR H+ A+ G GS ++ + W + R +
Sbjct: 5 RPRRKKHDYRIALFG---GSQPQSCRYFNPKDYSWT---DIRCPFEKRRDAACVFWDNVV 58
Query: 512 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 570
Y++GG C+N V W R ++ + IY GG G
Sbjct: 59 YILGGSQLF-PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN----CLNSCEVYDPE 626
E Y+ W M +R G IY+ GG G+N LNSCEVYDP
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 627 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686
WT + PM R + + I+ +GG NG+ + N E Y+ W V M
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237
Query: 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLP 746
+ +++ + GF GV + H+ Y+ +TD+W + + +
Sbjct: 238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC----- 292
Query: 747 NVYDYIHQHRDSL 759
V D + ++L
Sbjct: 293 -VVDTCGANEETL 304
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 2e-65
Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 19/230 (8%)
Query: 40 RPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGYNI 97
RPR H+ A+ G GS ++ + W + R +
Sbjct: 5 RPRRKKHDYRIALFG---GSQPQSCRYFNPKDYSWT---DIRCPFEKRRDAACVFWDNVV 58
Query: 98 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 156
Y++GG C+N V W R ++ + IY GG G
Sbjct: 59 YILGGSQLF-PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 157 NSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGN----EYYNSCRCFNAV 207
E Y+ W M + V N IYV GG GN NSC ++
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 208 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
T+ W E+ PM R +D I+A+GG NG ++VE Y+ N+
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 1e-64
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 21/224 (9%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFD-G 105
++ +GG S P ++ Y+ D W PR IY GG + G
Sbjct: 58 VYILGG-SQLFPIKRMDCYNVVKDSWY---SKLGPPTPRDSLAACAAEGKIYTSGGSEVG 113
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ----NSVEK 161
N C++ T+ W M +RC +IY GG G NS E
Sbjct: 114 NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEV 173
Query: 162 YNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKE 213
Y+ W+ + PM + V I+ +GG +G ++ ++ WK
Sbjct: 174 YDPATETWTELCPMIEARKNHGL---VFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 214 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
++PM +K V A ++Y + G+ G R + +YN ++
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 3e-52
Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 23/208 (11%)
Query: 48 LFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG 105
++ GG G S E YDTR + W M R HG IYV GG G
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQRCSHGMVEANGLIYVCGGSLG 160
Query: 106 N----EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 161
N NSC ++ T+ W E+ PM R +D I+A+GG NG ++VE
Sbjct: 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEY 220
Query: 162 YNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 213
Y+ N+W +++PM + + +YV+ GF G +N T W
Sbjct: 221 YDIKLNEWKMVSPMPWKGVTVKCAAVGS---IVYVLAGFQGVGRLGHILEYNTETDKWVA 277
Query: 214 IAPMNFKRCYVSTAVHQDVIYAMGGYNG 241
+ + V+ G
Sbjct: 278 NSKVRAFPVTSCLIC---VVDTCGANEE 302
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-37
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 48 LFAIGGWSGGSPTDF----VETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGG 102
++ GG G + + E YD + W ++ PM R HG + I+ +GG
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEARKNHGLVFVKDKIFAVGG 208
Query: 103 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 162
+G ++ ++ WK ++PM +K V A ++Y + G+ G R + +Y
Sbjct: 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEY 268
Query: 163 NYTENQWSLIAPMNCMIQN---VTYNIYVIGGFDGN 195
N ++W + + + + G +
Sbjct: 269 NTETDKWVANSKVRAFPVTSCLICV-VDTCGANEET 303
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = e-103
Identities = 60/317 (18%), Positives = 115/317 (36%), Gaps = 31/317 (9%)
Query: 454 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 510
PR +++ + + YD + + PR +
Sbjct: 7 IPRHGMFVKDLILLVNDTA-------AVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQ 58
Query: 511 IYVIGGFDGNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY 564
+YV+GG +E + + V+ W + P+ RC D IY + G
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Query: 565 N--GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG-FNGHNCLNSCE 621
+ + +SV Y+ +WS + + ++ + + G IY GG + C N
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178
Query: 622 VYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681
+Y+P+ W + PM+ RS + I + GG + E ++ T W +
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238
Query: 682 DMYNPRSNFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNI 732
+ RS+ ++ + ++AIGGF + T + + Y++ EW
Sbjct: 239 EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI- 297
Query: 733 YRSALSACVIMGLPNVY 749
R A A + N++
Sbjct: 298 -RYASGASCLATRLNLF 313
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 256 bits (655), Expect = 8e-79
Identities = 59/264 (22%), Positives = 97/264 (36%), Gaps = 26/264 (9%)
Query: 462 LFAIGGWSGG------SPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 514
++ +GG + D + WV + P+ R G + IYV+
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---GLPPLPSARCLFGLGEVDDKIYVV 115
Query: 515 GGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY-NGQRRQN 571
G D +S C++ V W E+ + K + H +IY +GG + ++ N
Sbjct: 116 AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 572 SVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWT 631
V YN + W +APM RS +GKI I GG S E +D + N+W
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235
Query: 632 LIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVPD 682
++ RS +S ++ +Y IGGF + KY K W+ +
Sbjct: 236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLK 295
Query: 683 MYNPRSNFAIEVIDDMI--FAIGG 704
R + + F +
Sbjct: 296 E--IRYASGASCLATRLNLFKLSK 317
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 2e-63
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 25/235 (10%)
Query: 40 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 96
PR +++ + + YD + + PR +
Sbjct: 7 IPRHGMFVKDLILLVNDTA-------AVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQ 58
Query: 97 IYVIGGFDGNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY 150
+YV+GG +E + + V+ W + P+ RC D IY + G
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Query: 151 N--GQRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGG-FDGNEYYNSCR 202
+ + +SV Y+ +WS + + + +++N IY +GG D + N
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178
Query: 203 CFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
+N WK++APM R A+H+ I GG SVE ++ N+
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 2e-59
Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 33/237 (13%)
Query: 48 LFAIGGWSGG------SPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 100
++ +GG + D + WV + P+ R G + IYV+
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---GLPPLPSARCLFGLGEVDDKIYVV 115
Query: 101 GGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY-NGQRRQN 157
G D +S C++ V W E+ + K + H +IY +GG + ++ N
Sbjct: 116 AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 158 SVEKYNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTK 209
V YN + W +APM + + I + GG + S F+ T
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGV---AIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ---------NSVEKYNYTENQ 257
W+ + +R +S +YA+GG+ + + N + KY + +
Sbjct: 233 KWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 8e-49
Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 21/209 (10%)
Query: 48 LFAIGGW--SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGG-F 103
++ + G + D V YD A +W + V + H IY +GG
Sbjct: 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHNVISHNGMIYCLGGKT 168
Query: 104 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 163
D + N +N WK++APM R A+H+ I GG SVE ++
Sbjct: 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD 228
Query: 164 YTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYY---------NSCRCFNAVTK 209
N+W ++ + V+ +Y IGGF + N + K
Sbjct: 229 LKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
W + S + ++ +
Sbjct: 289 EWAGMLKEIRYASGASCLATRLNLFKLSK 317
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = 1e-99
Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 29/309 (9%)
Query: 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 518
+++F I YD A+ P+ + ++V GG
Sbjct: 4 QDLIFMISEEG-------AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 519 GNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY---NGQRR 569
NE F+ + W + P+ RC + IY +GG +G+R
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEVYDPECN 628
+SV Y+ +W P+ + + +Y+ GG CLN VYDP+
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS 688
+W + PM+ RS + I V G + E Y+ W+ RS
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 689 NFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNIYRSALSA 739
+ ++ + ++AIGGF + T + + Y+E+ +W A A
Sbjct: 236 SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGA 293
Query: 740 CVIMGLPNV 748
+ NV
Sbjct: 294 TFLPVRLNV 302
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 9e-82
Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 25/271 (9%)
Query: 462 LFAIGGW------SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 514
+F GG + + +D W+ + P+ PR G +IYV+
Sbjct: 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL---GMPPLPSPRCLFGLGEALNSIYVV 104
Query: 515 GGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 570
GG DG +S C++ ++ W E P+ + + H D++Y +GG ++
Sbjct: 105 GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630
N + Y+ + +W +APM RS AT G+I + G +S EVY N+W
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224
Query: 631 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVP 681
E RS +S ++ +Y IGGF + +YN K W V
Sbjct: 225 APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284
Query: 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVTTIY 712
+ + + +Y
Sbjct: 285 RE--IAYAAGATFLPVRLNVLRLTKMAENLY 313
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 5e-62
Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 23/228 (10%)
Query: 45 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
+++F I YD A+ P+ + ++V GG
Sbjct: 4 QDLIFMISEEG-------AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 105 GNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN---GQRR 155
NE F+ + W + P+ RC + IY +GG G+R
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 156 QNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGF-DGNEYYNSCRCFNAVTK 209
+SV Y+ +W P+ ++ +++ +YVIGG + N ++
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
WKE+APM R VH I G +S E Y+ T+N+
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-58
Identities = 47/238 (19%), Positives = 88/238 (36%), Gaps = 34/238 (14%)
Query: 48 LFAIGGW------SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 100
+F GG + + +D W+ + P+ PR G +IYV+
Sbjct: 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL---GMPPLPSPRCLFGLGEALNSIYVV 104
Query: 101 GGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 156
GG DG +S C++ ++ W E P+ + + H D++Y +GG ++
Sbjct: 105 GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 157 NSVEKYNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVT 208
N + Y+ + +W +APM ++ I V G +S ++
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGA---TVHDGRIIVAAGVTDTGLTSSAEVYSITD 221
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ---------NSVEKYNYTENQ 257
W +R +S +YA+GG+ + N + +YN E +
Sbjct: 222 NKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 1e-52
Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 24/214 (11%)
Query: 48 LFAIGGWS---GGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGF 103
++ +GG G D V YD + +W + DP+ H +YVIGG
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYVVYGHTVLSHMDLVYVIGGK 157
Query: 104 -DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 162
+ N ++ WKE+APM R VH I G +S E Y
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217
Query: 163 NYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNE---------YYNSCRCFNAVT 208
+ T+N+W+ + V+ +Y IGGF E N +N
Sbjct: 218 SITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ 242
K W+ + + +
Sbjct: 278 KKWEGVLREI--AYAAGATFLPVRLNVLRLTKMA 309
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 48 LFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG 105
++ IGG S + + YD + W + + PM R+ G V I V G
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTARSLFGATVHDGRIIVAAGVTD 207
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--------- 156
+S ++ W +R +S +YA+GG+ +
Sbjct: 208 TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267
Query: 157 NSVEKYNYTENQWSLIAPMNCMIQNVT---YNIYVIGGFDGNEY 197
N + +YN E +W + T + V+ E
Sbjct: 268 NDIWRYNEEEKKWEGVLREIAYAAGATFLPVRLNVLRLTKMAEN 311
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA-TDMNIYRSALSACVIMGLPNVY 749
+ D+IF I YD +E Y A + ++ +S V+
Sbjct: 3 LQDLIFMISEEG-------AVAYDPAANECYCASLSSQVPKNHVSLVTKEN--QVF 49
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-61
Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
++ ++ +V +L D F + + ++ C +F+K+ NC I + + +L
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKA 163
Query: 329 RKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388
I RNF V + EE + + + +S E+ V SEE ++E +++W+ + E R++
Sbjct: 164 ADMIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERER 222
Query: 389 HIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKF 433
+ L K +RL ++ + VK V + C ++ + +
Sbjct: 223 YFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVER 267
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 3e-58
Identities = 49/161 (30%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
++ + ED + ++ A D ++ + LCC+F++ NC GI F+ + +
Sbjct: 96 QIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLA 155
Query: 329 RKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388
+Y+ +F DV+ +EE + +S Q+L+E+IS ++LNV +E V+E +IRWI +D E RK
Sbjct: 156 TEYLETHFRDVSS-TEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKV 214
Query: 389 HIVSLMKNIRLGLLETEFFREKVKHHPYVQ-STPECRPIII 428
H+ +M + + L++ + RE++ + P V+ EC I +
Sbjct: 215 HMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPL 255
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 3e-54
Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 45/312 (14%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN- 520
++ G +G + + + +W + P GPR +A I N+YV GG N
Sbjct: 22 VYIGLGSAGTA--WYKLDTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNS 78
Query: 521 ----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575
+ +N +N T W ++ T VH Y GG N E
Sbjct: 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138
Query: 576 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 635
N + I +N Y + +DP QW+
Sbjct: 139 LNEAGKDSTAIDKINAH-------------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGE 185
Query: 636 M-RHRRSGVSCIAYHECIYVIGGFNGMSRMCN---GEKYNPVTKTWSQVPDMYNPRS--N 689
+ +G + + + ++I G + + W+++ + +P
Sbjct: 186 SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245
Query: 690 FAIEVIDDMIFAIGGFN-----------------GVTTIYHVECYDEKTDEWYEATDMNI 732
+ +D + GG G+ Y + + +W ++ +++
Sbjct: 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ 305
Query: 733 YRSALSACVIMG 744
R+ +
Sbjct: 306 GRAYGVSLPWNN 317
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-45
Identities = 47/260 (18%), Positives = 79/260 (30%), Gaps = 28/260 (10%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVHQD 556
P A+ +Y+ G G +Y A K W +A R ++A
Sbjct: 9 PFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQATSAFIDG 66
Query: 557 VIYAMGGYNGQRRQ-----NSVEKYNYTENQWSLIAPMN-VERSDASATTLQGKIYITGG 610
+Y GG N V KYN N W + + + GK Y+TGG
Sbjct: 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG 126
Query: 611 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670
N + E + T I+ + Y FN +
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY--------FFNK-----FLLSF 173
Query: 671 NPVTKTWSQVPDM-YNPRSNFAIEVIDDMIFAIGGF--NGVTTIY-HVECYDEKTDEWYE 726
+P T+ WS + + + A+ D + I G G+ T + +W +
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233
Query: 727 ATDMNI--YRSALSACVIMG 744
++ + A +
Sbjct: 234 LAPVSSPDGVAGGFAGISND 253
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 5e-42
Identities = 43/275 (15%), Positives = 81/275 (29%), Gaps = 44/275 (16%)
Query: 462 LFAIGGWSGGS-----PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGG 516
L+ GG S + V Y+ + + WVK+ PM A H T V YV GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM-GMAGHVTFVHNGKAYVTGG 126
Query: 517 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 576
+ N + N K I +N +N + +
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFN-----KFLLSF 173
Query: 577 NYTENQWSLIAPMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVY----DPECNQWT 631
+ + QWS + A+ K ++ G L + V+ +W
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG-LRTDAVFELDFTGNNLKWN 232
Query: 632 LI--EPMRHRRSGVSCIAYHECIYVIGGFN-----------------GMSRMCNGEKYNP 672
+ +G ++ + GG G+ + + + +
Sbjct: 233 KLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW 292
Query: 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG 707
W + ++ R+ ++ + IGG
Sbjct: 293 HNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 6e-40
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 19/220 (8%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN- 106
++ G +G + + + +W + P GPR +A I N+YV GG N
Sbjct: 22 VYIGLGSAGTA--WYKLDTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNS 78
Query: 107 ----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 161
+ +N +N T W ++ T VH Y GG N E
Sbjct: 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138
Query: 162 YNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK- 220
N + I +N Y + + F+ T+ W +
Sbjct: 139 LNEAGKDSTAIDKIN--------AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG 190
Query: 221 RCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTENQDK 259
+ D + + G R ++V + ++T N K
Sbjct: 191 TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK 230
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-39
Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 26/215 (12%)
Query: 539 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPM-NVERSD 595
+ + A+ D +Y G G + K + + +W+ +A R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 596 ASATTLQGKIYITGGFNGHNC-----LNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAYH 649
A++ + G +Y+ GG ++ N Y+P+ N W L+ +G ++
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 650 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT 709
YV GG N E N K + + + + E FN
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFNK-- 168
Query: 710 TIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744
+ +D T +W A + Y +A +A V G
Sbjct: 169 ---FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG 200
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-31
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 9/175 (5%)
Query: 584 SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RHRRSG 642
S++ V + +YI G G + +WT + R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 643 VSCIAYHECIYVIGGFNGMSRMCN-----GEKYNPVTKTWSQVPD-MYNPRSNFAIEVID 696
+ +YV GG S KYNP T +W ++ + V +
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 697 DMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDY 751
+ GG N + E +E + +N + A + +
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 2e-29
Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 44/243 (18%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE 107
+ GG + + E + +D + Y +
Sbjct: 121 AYVTGGVNQNIFNGYFEDLNEAGKDST---AIDKINAH------------YFDKKAEDYF 165
Query: 108 YYNSCRCFNAVTKVWKEIAPMNFK-RCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYT 165
+ F+ T+ W + + D + + G R ++V + ++T
Sbjct: 166 FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFT 225
Query: 166 E--NQWSLIAPMNCMIQN-----VTYN--IYVIGG-----------------FDGNEYYN 199
+W+ +AP++ N + GG +G +
Sbjct: 226 GNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSY 285
Query: 200 SCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ-RRQNSVEKYNYTENQD 258
S W + ++ R Y + + + +GG + +N+
Sbjct: 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345
Query: 259 KIE 261
++
Sbjct: 346 TVQ 348
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-27
Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 25/198 (12%)
Query: 466 GGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNS 525
F+ ++D +W + P A G ++I G
Sbjct: 159 KKAEDYFFNKFLLSFDPSTQQWSYAGES-PWYGTAGAAVVNKGDKTWLINGEAKPGLRTD 217
Query: 526 ---CRCFNAVTKVWKEIAPMNFKRCYV--STAVHQDVIYAMGGYN--------------- 565
F W ++AP++ + D + GG
Sbjct: 218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 566 --GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEV 622
G ++ S + + + +W ++ R+ + + I GG G + +
Sbjct: 278 HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337
Query: 623 YDPECNQWTLIEPMRHRR 640
+ N+ T ++ + H
Sbjct: 338 ITVKDNKVT-VQNLEHHH 354
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 18/147 (12%)
Query: 125 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPMN----CM 178
+ + A+ D +Y G G + K + + +W+ +A
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 179 IQNVTYN--IYVIGGFDGN-----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQ 230
+ + +YV GG N + +N +N T W ++ T VH
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 231 DVIYAMGGYNGQRRQNSVEKYNYTENQ 257
Y GG N E N
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKD 145
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 305 TPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELN 364
NC ++ + H +L + + + +EE + + + L +IIS
Sbjct: 9 QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQ-NTEEFLHLPHRLLTDIISDG--- 64
Query: 365 VKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRL 399
V + E I WI+++ E R+ SL +++
Sbjct: 65 VPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 41/371 (11%)
Query: 370 TVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIE 429
+++ + D + + + L + ++ T
Sbjct: 308 DMFQ-LWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSI 366
Query: 430 TFKFLYDLELIAQIDGEVPTPEI-ARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWV 488
+ L E ++ E P V +F +GG + + ++ D+
Sbjct: 367 SEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQ-LSIHYDKID 425
Query: 489 KIDQVDPMG----PRAYHGTAVIGYN--IYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAP 541
+ R H I N + +IGG + F+ T+ W I
Sbjct: 426 MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS 485
Query: 542 MNFKRCY-VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-------R 593
++ R + ++ + +GG ++ YN TE + + P +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542
Query: 594 SDASATTLQGKIYITGGFNGHNCLN-SCEVYDPECNQWT--------LIEPMRHRRSGVS 644
+ I + GGF ++ ++ + T L P+ R
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602
Query: 645 CIAYHECIYVIGGFNGMSRMCNG---EKYNPVTKTWSQVPDMYNPRSNF--------AIE 693
+ ++GG + +P+++T + +P + +
Sbjct: 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662
Query: 694 VIDDMIFAIGG 704
I IGG
Sbjct: 663 TSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 9e-23
Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 37/306 (12%)
Query: 448 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD-------TRADRWVKIDQVDPMGPRA 500
T E R G++ + D + ++ + D+++
Sbjct: 287 NTIESQVQRFNKL------GFAYVNVGDMFQLWESADEATKKELLKVEPFDELEEFHLFC 340
Query: 501 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF--KRCYVSTAVHQDVI 558
+H N G + S N ++ R + V + +
Sbjct: 341 HHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDV 400
Query: 559 YAMGGYNGQRRQNSVEKYNYTENQWSLI------APMNVERSDASATTL--QGKIYITGG 610
+ MGG N R N + + + ++ + + + V R + TT+ ++ + GG
Sbjct: 401 FYMGGSNPYRV-NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGG 459
Query: 611 FNGH-NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGE 668
L+ ++D + +W++I+ + H R S + + + ++GG M
Sbjct: 460 RKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAM---L 516
Query: 669 KYNPVTKTWSQVPDM-------YNPRSNFAIEVIDDMIFAIGGFNGVTTIY-HVECYDEK 720
YN + + V V I GGF TT+ +
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576
Query: 721 TDEWYE 726
+ E
Sbjct: 577 AENATE 582
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 3e-16
Identities = 36/266 (13%), Positives = 78/266 (29%), Gaps = 47/266 (17%)
Query: 15 ETFKFLYDLELIAQIDGEVPTPEIARPRVPH--------EILFAIGGW-SGGSPTDFVET 65
E + + I + EV + E+ R+ H L IGG +
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472
Query: 66 YDTRADRWVKIDQVDPMGPRAYHGTAVIGYN-IYVIGGFDGNEYYNSCRCFNAVTKVWKE 124
+D + W I + R H + + ++GG + +N +++K+
Sbjct: 473 FDMKTREWSMIKSLSH--TRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKD 527
Query: 125 IAPMNFK-------RCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTEN----QWSLI 172
+ P + V + I GG+ Q + + Y ++I
Sbjct: 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVI 587
Query: 173 APMNCMIQ-------NVTYN--IYVIGGFDGN---EYYNSCRCFNAVTKVWKEIAPMNFK 220
+ + + ++GG + + NS + +++ I
Sbjct: 588 KKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRI 647
Query: 221 RCYV--------STAVHQDVIYAMGG 238
+ I+ +GG
Sbjct: 648 WEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 9e-14
Identities = 25/209 (11%), Positives = 68/209 (32%), Gaps = 31/209 (14%)
Query: 73 WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT------KVWKEIA 126
++ + + R + V G +++ +GG + N + + +
Sbjct: 376 DYQLLECECPINRKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSS 434
Query: 127 PMNFKRCYVSTAV--HQDVIYAMGGYNGQRRQ-NSVEKYNYTENQWSLIAPMN------- 176
+ R + + + +GG + + ++ +WS+I ++
Sbjct: 435 EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS 494
Query: 177 -CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-------RCYVSTAV 228
C + + N+ ++GG + +N +++K++ P + V
Sbjct: 495 ACSLPD--GNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 229 HQDVIYAMGGYNGQRR-QNSVEKYNYTEN 256
+ I GG+ Q + + Y
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAE 578
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
+ S + + L R ++ +GG N R+ + +
Sbjct: 362 FDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIH 420
Query: 674 TKTWSQV------PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYH-VECYDEKTDEW 724
++ R I ++ + IGG +D KT EW
Sbjct: 421 YDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW 480
Query: 725 YEATDMNIYRSALSACVI 742
++ R SAC +
Sbjct: 481 SMIKSLSHTRFRHSACSL 498
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 103 bits (256), Expect = 8e-23
Identities = 43/311 (13%), Positives = 82/311 (26%), Gaps = 38/311 (12%)
Query: 468 WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 527
++D G ++ G V+ G +
Sbjct: 212 GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTS 268
Query: 528 CFNAVTKVWKEIAPMNFKRCYVSTAVHQD--VIYAMGGYNGQRRQNSVEKYNYTENQWSL 585
+++ + W M R Y S+A D V G ++G + + E Y+ + W+
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 586 IAPMNVERSDASATTLQ----GKIYITGGFNGH-----NCLNSCEVYDPECNQWTLIEPM 636
+ V + ++ G G Y
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Query: 637 RHRRSGVSCI---------AYHECIYVIGGFNGMS--------RMCNGEKYNPVTKTWSQ 679
+ R A I GG + + T
Sbjct: 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448
Query: 680 VPDMYNPRSNF-AIEVIDDMIFAIGG------FNGVTTIYHVECYDEKTDEWYEATDMNI 732
+Y R+ ++ + D F GG F T ++ E Y + D +Y+ +I
Sbjct: 449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508
Query: 733 YRSALSACVIM 743
R S +++
Sbjct: 509 VRVYHSISLLL 519
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 75.0 bits (183), Expect = 5e-14
Identities = 49/315 (15%), Positives = 86/315 (27%), Gaps = 29/315 (9%)
Query: 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN--IYVIGG 516
HE+ + G + GSP V + AD K + R A+ N +
Sbjct: 102 HEVYLSSDGTNWGSP---VASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIA 158
Query: 517 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNS---- 572
+S W + + + Y S
Sbjct: 159 EINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGI 218
Query: 573 --VEKYNYTENQWSLIAPMNVERSDASATTLQ---GKIYITGGFNGHNCLNSCEVYDPEC 627
++ + S + G+I +TGG + +YD
Sbjct: 219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSS 274
Query: 628 NQWTLIEPMRHRRSGVSCIAYHE-CIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
+ W M+ R S + ++ IGG ++G NGE Y+P +KTW+ +P+
Sbjct: 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334
Query: 686 PRSNFAIE----VIDDMIFAIGGFNGVTTIY-----HVECYDEKTDEWYEATDMNIYRSA 736
A + D+ + G G Y + + A R
Sbjct: 335 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394
Query: 737 LSACVIMGLPNVYDY 751
+
Sbjct: 395 APDAMCGNAVMYDAV 409
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 70.0 bits (170), Expect = 2e-12
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 42/247 (17%)
Query: 48 LFAIGG-WSGGSPTDFVETYDTRADRWVKI--DQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
+F IGG WSGG E Y + W + +V+PM G + ++ G
Sbjct: 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK 359
Query: 105 GNEYY-----NSCRCFNAVTKVWKEIAPMNFKRCY---------VSTAVHQDVIYAMGGY 150
G+ + + + + K R V + I GG
Sbjct: 360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419
Query: 151 NGQRRQNS--------VEKYNYTENQWSLIAPMN------CMIQNVTYNIYVIGG----- 191
+ ++ + + + N + + + ++ GG
Sbjct: 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479
Query: 192 -FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV---HQDVIYAMGGYNGQRRQN- 246
F+ + + + + + P + R Y S ++ V GG G N
Sbjct: 480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH 539
Query: 247 -SVEKYN 252
+ +
Sbjct: 540 FDAQIFT 546
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 8e-10
Identities = 26/213 (12%), Positives = 54/213 (25%), Gaps = 28/213 (13%)
Query: 54 WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 113
++D G ++ G V+ G +
Sbjct: 212 GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTS 268
Query: 114 CFNAVTKVWKEIAPMNFKRCYVSTAVHQD--VIYAMGGYNGQRRQNSVEKYNYTENQWSL 171
+++ + W M R Y S+A D V G ++G + + E Y+ + W+
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 172 IAPMNCMIQNVTY---------NIYVIGGFDGNEYY-----NSCRCFNAVTKVWKEIAPM 217
+ + ++ G G+ + + + + K
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Query: 218 NFKRCY---------VSTAVHQDVIYAMGGYNG 241
R V + I GG
Sbjct: 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-14
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
K + LL A D + + + + +C D + + N IL+ + H +L+
Sbjct: 97 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQA 156
Query: 329 RKYILRNFVDVAR 341
+I + DV
Sbjct: 157 VDFINYHATDVLE 169
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 8e-12
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
K + LL A D + + + + +C D + + N IL+ + H +L+
Sbjct: 237 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQA 296
Query: 329 RKYILRNFVDV 339
+I + DV
Sbjct: 297 VDFINYHATDV 307
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 7e-10
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDH 319
L +T N +LLA + +A +LC F + + + G+
Sbjct: 84 HLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQSGPSS 134
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-09
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKL 324
K + LL A D + + + + +C D + + N IL+ + H +L
Sbjct: 88 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 7e-09
Identities = 78/512 (15%), Positives = 135/512 (26%), Gaps = 180/512 (35%)
Query: 61 DFVET-----YDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY---YNSC 112
FVE Y K +Q P Y ++ N+ YN
Sbjct: 81 KFVEEVLRINYKFLMSPI-KTEQRQPSMMT-------RMYIEQRDRLYNDNQVFAKYNVS 132
Query: 113 R--CFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 170
R + + + E+ P V +I + G G K
Sbjct: 133 RLQPYLKLRQALLELRPAK----NV-------LIDGVLGS-G--------K-------TW 165
Query: 171 LIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-- 228
+ +V + V D + W +N K C V
Sbjct: 166 VAL-------DVCLSYKVQCKMDFKIF-------------W-----LNLKNCNSPETVLE 200
Query: 229 -HQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH----ITEDNVASLLLA 283
Q ++Y + N R + + + E ++L + K + + NV +
Sbjct: 201 MLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 284 TDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARES 343
F +L C K L T TR + +F+ A +
Sbjct: 260 NAF-------NLSC---KILLT----------------------TRFKQVTDFLSAATTT 287
Query: 344 EEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLE 403
+ L +E L+++++D P++
Sbjct: 288 HISLDHHSMTLTP-----------DEVK-SLLLKYLDCRPQDLP---------------- 319
Query: 404 TEFFREKVKHHPYVQST--PECR--PIIIETFK--FLYDLELIAQIDGEVPTPEIARPR- 456
RE + +P S R + +K L I + V P R
Sbjct: 320 ----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 457 -----------VPHEILFAIGGWSGGSPTD---FVETYDTR--ADRWVK----------I 490
+P +L I W +D V ++ K +
Sbjct: 376 DRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 491 D-QVDPMGPRAYHGTAVIGYNIYVIGGFDGNE 521
+ +V A H + V YNI FD ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPK--TFDSDD 463
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
KL ++ +NV +L F M C
Sbjct: 85 KLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302
L +T N +LLA + +A +LC F +
Sbjct: 83 HLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 305
+L + + L+ F + + + +F ++++
Sbjct: 93 RLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-06
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
L++ NV + A D+ + + C ++
Sbjct: 83 TLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRL 303
L +++ LL A + + ++ C ++ +
Sbjct: 86 TLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ + + L A + ++ C
Sbjct: 84 SVELQPGELRPLQEAARALGVQSLEEACWRARG 116
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+L++ E N+ +++ + M D C FIK
Sbjct: 92 RLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK-RLTTPRN 308
KL +++DNV + +F + ++ C F+K + +
Sbjct: 98 KLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
++ + ED + ++ A D ++ + LCC+F++
Sbjct: 112 QIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
KL ++++NV + +F + ++ C F+K
Sbjct: 91 KLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFI 300
L ++ NV +L A + +C D +
Sbjct: 88 TLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFI 300
KL ++ +N+ ++ +F M +D C F+
Sbjct: 94 KLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 4e-04
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302
++ + D V + L A + + C +F++
Sbjct: 74 EIDLEADTVLATLYAAKKYIVPALAKACVNFLET 107
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.97 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.97 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 99.74 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.63 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.52 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.38 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.05 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.03 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 98.97 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 98.97 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 98.94 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 98.91 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 98.89 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 98.85 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 98.85 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 98.83 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 98.75 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 98.73 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 98.69 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 98.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.39 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 98.35 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 98.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.07 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.92 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.9 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.82 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.78 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.72 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 97.64 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 97.57 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.4 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.4 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.37 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.34 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.24 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.22 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.11 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.06 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.04 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.03 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.03 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.99 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.96 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.96 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.89 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 96.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.83 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.82 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.81 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.78 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.77 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.75 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.73 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.72 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.71 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.7 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.67 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.65 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.64 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.63 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.57 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.48 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.47 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.47 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.46 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.41 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.4 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 96.39 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.39 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.38 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.38 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.37 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.36 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.36 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.35 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.34 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.33 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.3 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.24 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.22 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.2 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.19 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.18 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.07 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.02 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.02 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.02 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.0 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.98 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.9 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.87 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.85 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.82 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.82 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.82 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.82 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 95.76 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.76 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.74 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.69 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.66 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 95.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.63 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.57 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 95.54 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.53 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 95.51 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.49 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.45 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.44 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.35 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.35 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.27 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.26 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.25 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.24 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.24 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.21 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 95.16 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.15 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.1 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.07 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.06 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.05 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 95.04 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.04 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 94.98 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.95 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 94.94 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.93 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 94.82 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.78 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 94.78 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 94.76 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 94.75 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.74 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 94.71 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 94.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 94.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.61 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 94.6 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 94.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 94.57 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.54 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.53 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 94.5 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.49 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.42 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 94.37 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.36 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.35 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 94.35 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.35 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 94.3 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.26 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.24 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 94.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.17 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.14 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 94.05 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 94.04 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 93.98 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 93.88 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 93.87 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 93.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.82 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 93.8 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.78 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.75 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.6 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 93.56 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.54 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.52 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 93.52 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 93.49 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 93.46 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 93.46 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 93.29 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 93.27 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.22 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 93.2 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.17 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.15 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 93.14 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 93.11 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.03 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 92.99 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 92.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 92.95 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 92.84 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 92.82 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 92.8 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 92.76 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 92.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 92.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 92.44 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 92.37 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 92.35 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 92.2 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 92.01 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 91.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.91 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 91.91 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 91.9 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 91.85 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 91.83 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.82 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 91.77 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 91.36 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 91.26 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 91.22 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 90.97 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 90.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 90.51 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 90.36 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 90.22 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 90.15 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 90.02 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 90.02 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 89.98 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 89.98 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 89.92 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 89.9 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 89.85 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 89.61 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 89.6 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 89.5 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 88.91 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 88.85 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 88.85 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 88.75 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 88.73 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 88.61 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 88.47 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 88.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 88.41 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 88.38 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 88.23 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 88.19 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 88.08 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 88.06 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 88.05 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 87.92 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 87.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 87.63 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 87.32 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 86.73 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 86.72 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 86.7 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 86.16 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 86.07 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 85.78 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 85.72 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 85.61 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 85.57 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 85.53 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 85.51 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 85.42 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 85.41 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 84.98 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 84.8 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 84.59 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 83.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 83.55 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 83.33 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 83.2 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 83.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 82.77 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 82.65 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 82.64 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 82.27 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 81.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 81.56 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 81.33 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 81.32 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 81.02 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 80.75 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 80.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 80.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 80.33 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 80.21 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 80.21 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 80.18 |
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=403.43 Aligned_cols=292 Identities=30% Similarity=0.587 Sum_probs=264.0
Q ss_pred ccCCCCC---CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEE
Q psy17309 452 IARPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRC 528 (824)
Q Consensus 452 ~~~~r~~---~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 528 (824)
+++||.. .+.|+++||... ...+++++||+.+++|..+ +++|.+|..|++++++++||++||.++....+++++
T Consensus 5 ~~~~r~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 81 (302)
T 2xn4_A 5 RTRLRTPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQV--AELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDS 81 (302)
T ss_dssp ----------CEEEEEECCBSS-SBCCCEEEEETTTTEEEEE--CCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEE
T ss_pred cccCCcccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEc--ccCCcccccceEEEECCEEEEEeCcCCCccccceEE
Confidence 3445543 568999999764 4567899999999999995 577889999999999999999999987777899999
Q ss_pred EECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEE
Q psy17309 529 FNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYIT 608 (824)
Q Consensus 529 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~ 608 (824)
||+.+++|+.++++|.+|..|++++++++||++||.++...++++++||+.+++|+.++++|.+|..|++++++++||++
T Consensus 82 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 161 (302)
T 2xn4_A 82 YDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAV 161 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred ECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEE
Confidence 99999999999999999999999999999999999987777889999999999999999999999999999999999999
Q ss_pred cccCCC--CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCC
Q psy17309 609 GGFNGH--NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686 (824)
Q Consensus 609 GG~~~~--~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 686 (824)
||.++. ...+++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+++++|+.++++|.+
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 241 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc
Confidence 998654 347899999999999999999999999999999999999999988777788999999999999999999999
Q ss_pred CcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEecc-CCCCCccceeEEEEcCcc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT-DMNIYRSALSACVIMGLP 746 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~~ 746 (824)
|..++++.++++||++||.++....+++++||+++++|+.++ .||.+|..|++++++++|
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEecccC
Confidence 999999999999999999987777889999999999999996 899999999999998764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-47 Score=401.70 Aligned_cols=287 Identities=24% Similarity=0.453 Sum_probs=262.8
Q ss_pred cCCCCC-CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC
Q psy17309 453 ARPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA 531 (824)
Q Consensus 453 ~~~r~~-~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~ 531 (824)
.+||.. .+.|+++||... .++++.||+.+++|..+ +++|.+|.+|++++++++||++||.+ ....+++++||+
T Consensus 4 ~~pr~~~~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~ 77 (306)
T 3ii7_A 4 TRPRRKKHDYRIALFGGSQ---PQSCRYFNPKDYSWTDI--RCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNV 77 (306)
T ss_dssp ------CCCEEEEEECCSS---TTSEEEEETTTTEEEEC--CCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEET
T ss_pred ccCCccccceEEEEeCCCC---CceEEEecCCCCCEecC--CCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeC
Confidence 345543 479999999765 78899999999999994 56788999999999999999999988 667899999999
Q ss_pred CCCceEEeccCCCCcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcc
Q psy17309 532 VTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG 610 (824)
Q Consensus 532 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG 610 (824)
.+++|..++++|.+|..|++++++++||++||.+ +...++++++||+.+++|+.++++|.+|..|++++++++|||+||
T Consensus 78 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 157 (306)
T 3ii7_A 78 VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157 (306)
T ss_dssp TTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECC
Confidence 9999999999999999999999999999999987 666789999999999999999999999999999999999999999
Q ss_pred cCCCCc----CCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCC
Q psy17309 611 FNGHNC----LNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686 (824)
Q Consensus 611 ~~~~~~----~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 686 (824)
.+.... .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 876544 8999999999999999999999999999999999999999987776788999999999999999999999
Q ss_pred CcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 745 (824)
|..+++++++++|||+||.++....+++++||+++++|+.++++|.+|..|+++++.+.
T Consensus 238 r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 296 (306)
T 3ii7_A 238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT 296 (306)
T ss_dssp BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEEC
T ss_pred ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECCc
Confidence 99999999999999999998877888999999999999999999999999999887664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=399.16 Aligned_cols=290 Identities=36% Similarity=0.714 Sum_probs=265.9
Q ss_pred ccCCCCC-CCEEEEEcc-CCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEE
Q psy17309 452 IARPRVP-HEILFAIGG-WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCF 529 (824)
Q Consensus 452 ~~~~r~~-~~~l~~~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~y 529 (824)
+.+||.. .+.++++|| .......+.+++||+.+++|..+ +++|.+|..|+++..+++||++||.++....+++++|
T Consensus 6 ~~~pr~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 6 RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFL--PSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp -------CCEEEEEECCEETTTEECCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred cccccccCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeC--CCCChhhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 4456654 568999999 55566788999999999999995 4677899999999999999999999877788999999
Q ss_pred ECCCCc---eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEE
Q psy17309 530 NAVTKV---WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY 606 (824)
Q Consensus 530 d~~~~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ly 606 (824)
|+.+++ |+.++++|.+|..|++++++++||++||..+...++++++||+.+++|+.++++|.+|..|++++++++||
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 163 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIY 163 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEE
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEE
Confidence 999999 99999999999999999999999999999877778999999999999999999999999999999999999
Q ss_pred EEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCC
Q psy17309 607 ITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686 (824)
Q Consensus 607 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 686 (824)
++||.++....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 99999877788999999999999999999999999999999999999999988776789999999999999999999999
Q ss_pred CcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 743 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 743 (824)
|..+++++++++||++||.++....+++++||+++++|+.+++||.+|..|+++++.
T Consensus 244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence 999999999999999999987777889999999999999999999999999999875
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=400.35 Aligned_cols=282 Identities=35% Similarity=0.688 Sum_probs=264.1
Q ss_pred CCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeec----CCCcccceEEEEECCC
Q psy17309 458 PHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGF----DGNEYYNSCRCFNAVT 533 (824)
Q Consensus 458 ~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~----~~~~~~~~~~~yd~~~ 533 (824)
-.+.|+++||. .+...+++++||+.+++|..+ +++|.+|..|++++++++||++||. ++....+++++||+.+
T Consensus 23 ~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCB-SSSBCCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCc-CCCCcceEEEEcCCCCeEeEC--CCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 35789999998 556778899999999999995 6778899999999999999999998 5556678999999999
Q ss_pred CceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 534 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
++|+.++++|.+|..|++++++++||++||..+...++++++||+.+++|+.++++|.+|..|++++++++||++||.++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred CeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCC
Confidence 99999999999999999999999999999988777789999999999999999999999999999999999999999987
Q ss_pred CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEE
Q psy17309 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIE 693 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 693 (824)
....+++++||+.+++|+.++++|.+|..|+++.++++||++||.++....+++++||+.+++|+.++++|.+|..++++
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 259 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE
Confidence 76789999999999999999999999999999999999999999887777899999999999999999999999999999
Q ss_pred EECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEE
Q psy17309 694 VIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742 (824)
Q Consensus 694 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 742 (824)
+++++|||+||.++....+++++||+++++|+.+++||.+|..|+++++
T Consensus 260 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 260 VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred EECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 9999999999998877889999999999999999999999999998863
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-47 Score=402.60 Aligned_cols=198 Identities=39% Similarity=0.676 Sum_probs=185.4
Q ss_pred CCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEe
Q psy17309 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 498 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 577 (824)
+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||.++...++++++||
T Consensus 111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 190 (308)
T 1zgk_A 111 PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 190 (308)
T ss_dssp CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE
T ss_pred CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEe
Confidence 56667788888999999998777778999999999999999999999999999999999999999998776789999999
Q ss_pred CCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEec
Q psy17309 578 YTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 578 ~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
+.+++|+.++++|.+|..|++++++++|||+||.++....+++++||+++++|+.++++|.+|..++++.++++||++||
T Consensus 191 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 191 PERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 270 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred CCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE
Q psy17309 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI 695 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (824)
.++....+++++||+++++|+.++++|.+|..++++++
T Consensus 271 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp BCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred cCCCcccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 88777789999999999999999999999999998864
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=390.18 Aligned_cols=202 Identities=36% Similarity=0.615 Sum_probs=186.3
Q ss_pred CCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCC--CCCeEEE
Q psy17309 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR--RQNSVEK 575 (824)
Q Consensus 498 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~ 575 (824)
+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||.++.. .++++++
T Consensus 98 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 98 RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence 45667788888999999999877778999999999999999999999999999999999999999987543 4789999
Q ss_pred EeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEE
Q psy17309 576 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVI 655 (824)
Q Consensus 576 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 655 (824)
||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+++++|+.++++|.+|..|+++.++++||++
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~ 257 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVV 257 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEE
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred ecCCCCCccceEEEEeCCCCCEEECC-CCCCCCcceEEEEECCEE
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKTWSQVP-DMYNPRSNFAIEVIDDMI 699 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~i 699 (824)
||.++....+++++||+++++|+.++ ++|.+|..|++++++++|
T Consensus 258 GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred CCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEecccC
Confidence 99887777899999999999999997 899999999999998875
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=392.33 Aligned_cols=281 Identities=22% Similarity=0.389 Sum_probs=255.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC------CCcccceEEEEECCC
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD------GNEYYNSCRCFNAVT 533 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~------~~~~~~~~~~yd~~~ 533 (824)
+.++++|| +.+++|||.+++|.. +..+.|.+|.+|++++++++||++||.. .....+++++||+.+
T Consensus 5 ~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 5 DLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred eEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 57899999 679999999999987 4445577999999999999999999962 123356699999999
Q ss_pred CceEEeccCCCCcceEEEEEECCEEEEEeccc---CCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcc
Q psy17309 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN---GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG 610 (824)
Q Consensus 534 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG 610 (824)
++|+.++++|.+|..|++++++++||++||.+ +...++++++||+.+++|+.++++|.+|.+|++++++++|||+||
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 99999999999999999999999999999975 356789999999999999999999999999999999999999999
Q ss_pred c-CCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcc
Q psy17309 611 F-NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN 689 (824)
Q Consensus 611 ~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (824)
. ++....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+|..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 236 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS 236 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 9 556678999999999999999999999999999999999999999988777788999999999999999999999999
Q ss_pred eEEEEECCEEEEEccCCCC---------ceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceec
Q psy17309 690 FAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYD 750 (824)
Q Consensus 690 ~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~ 750 (824)
+++++++++||++||.+.. ...+++++||+++++|+.+ +|.+|..|+++++++++|++.
T Consensus 237 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~~ 304 (315)
T 4asc_A 237 LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLNVLR 304 (315)
T ss_dssp CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEECGGG
T ss_pred eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEEEEE
Confidence 9999999999999998531 3568899999999999999 677899999999999999873
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=388.62 Aligned_cols=287 Identities=24% Similarity=0.404 Sum_probs=252.1
Q ss_pred CCCCcCC-CcEEEEEccCCCCCCCcceEEEECCCCcEEeeccCCCCCCcCeEEEEEECCEEEEEccCCCCcccceEEEEE
Q psy17309 38 IARPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFN 116 (824)
Q Consensus 38 ~~~~r~~-~~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~~~~~yv~GG~~~~~~~~~~~~~~ 116 (824)
+++||.. ++.||+|||... .+++++||+.+++|..++.++ .+|.+|++++++++||||||.+ ...++++++||
T Consensus 3 ~~~pr~~~~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d 76 (306)
T 3ii7_A 3 GTRPRRKKHDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPF--EKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYN 76 (306)
T ss_dssp -------CCCEEEEEECCSS---TTSEEEEETTTTEEEECCCCS--CCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEE
T ss_pred cccCCccccceEEEEeCCCC---CceEEEecCCCCCEecCCCCC--cccceeEEEEECCEEEEEeCCC-CCCcceEEEEe
Confidence 4556643 479999999655 789999999999999998654 8999999999999999999988 77889999999
Q ss_pred ccCCceeEecccCCCcceeEEEEECCEEEEEcCcC-CCCCCCcEEEEECCCCeEEEeccccceeeccCCeEEEEcccCCc
Q psy17309 117 AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGN 195 (824)
Q Consensus 117 ~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i~v~GG~~~~ 195 (824)
+.+++|++++++|.+|..|++++++++||||||.+ +...++++++||+.+++|+.+++|+
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p------------------- 137 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML------------------- 137 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-------------------
T ss_pred CCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-------------------
Confidence 99999999999999999999999999999999997 5566889999999888887665442
Q ss_pred eeeceEEEEECCCCeEEEecccccCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHh
Q psy17309 196 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITED 275 (824)
Q Consensus 196 ~~~~~~~~~~~~~~~W~~i~~~~~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~ 275 (824)
T Consensus 138 -------------------------------------------------------------------------------- 137 (306)
T 3ii7_A 138 -------------------------------------------------------------------------------- 137 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHH
Q psy17309 276 NVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELE 355 (824)
Q Consensus 276 ~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~ 355 (824)
T Consensus 138 -------------------------------------------------------------------------------- 137 (306)
T 3ii7_A 138 -------------------------------------------------------------------------------- 137 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhh
Q psy17309 356 EIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLY 435 (824)
Q Consensus 356 ~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 435 (824)
T Consensus 138 -------------------------------------------------------------------------------- 137 (306)
T 3ii7_A 138 -------------------------------------------------------------------------------- 137 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEe
Q psy17309 436 DLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIG 515 (824)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~G 515 (824)
.+|..|++++++++||++|
T Consensus 138 -------------------------------------------------------------~~r~~~~~~~~~~~iyv~G 156 (306)
T 3ii7_A 138 -------------------------------------------------------------TQRCSHGMVEANGLIYVCG 156 (306)
T ss_dssp -------------------------------------------------------------SCCBSCEEEEETTEEEEEC
T ss_pred -------------------------------------------------------------CCcceeEEEEECCEEEEEC
Confidence 2455566777788888888
Q ss_pred ecCCCcc----cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCc
Q psy17309 516 GFDGNEY----YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV 591 (824)
Q Consensus 516 G~~~~~~----~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 591 (824)
|.++... .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.....+++++||+.+++|+.++++|.
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 8765443 789999999999999999999999999999999999999998877678899999999999999999999
Q ss_pred ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC
Q psy17309 592 ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650 (824)
Q Consensus 592 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (824)
+|..|++++++++|||+||.++....+++++||+++++|+.++++|.+|..|+++++.+
T Consensus 237 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 237 KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEE
T ss_pred CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECC
Confidence 99999999999999999999877788999999999999999999999999999887754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=386.59 Aligned_cols=290 Identities=33% Similarity=0.672 Sum_probs=257.7
Q ss_pred CCCCcCC-CcEEEEEcc-CCCCCCCcceEEEECCCCcEEeeccCCCCCCcCeEEEEEECCEEEEEccCCCCcccceEEEE
Q psy17309 38 IARPRVP-HEILFAIGG-WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCF 115 (824)
Q Consensus 38 ~~~~r~~-~~~i~~~GG-~~~~~~~~~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~~~~~yv~GG~~~~~~~~~~~~~ 115 (824)
+++||.. .+.||+||| ......+++++.||+.+++|..++.++ .+|.+|++++++++||||||.++...++++++|
T Consensus 6 ~~~pr~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 6 RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp -------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred cccccccCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC--hhhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 6777743 468999999 555556899999999999999998654 789999999999999999999888889999999
Q ss_pred EccCCc---eeEecccCCCcceeEEEEECCEEEEEcCcCCCCCCCcEEEEECCCCeEEEeccccceeeccCCeEEEEccc
Q psy17309 116 NAVTKV---WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGF 192 (824)
Q Consensus 116 ~~~~~~---W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i~v~GG~ 192 (824)
|+.+++ |++++++|.+|..|++++++++||++||.++...++++++||+.+++|+.+++++
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---------------- 147 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ---------------- 147 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----------------
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC----------------
Confidence 999999 9999999999999999999999999999988777889999999999987765542
Q ss_pred CCceeeceEEEEECCCCeEEEecccccCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceec
Q psy17309 193 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHI 272 (824)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~W~~i~~~~~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l 272 (824)
T Consensus 148 -------------------------------------------------------------------------------- 147 (301)
T 2vpj_A 148 -------------------------------------------------------------------------------- 147 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHH
Q psy17309 273 TEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQ 352 (824)
Q Consensus 273 ~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~ 352 (824)
T Consensus 148 -------------------------------------------------------------------------------- 147 (301)
T 2vpj_A 148 -------------------------------------------------------------------------------- 147 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHH
Q psy17309 353 ELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFK 432 (824)
Q Consensus 353 ~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 432 (824)
T Consensus 148 -------------------------------------------------------------------------------- 147 (301)
T 2vpj_A 148 -------------------------------------------------------------------------------- 147 (301)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEE
Q psy17309 433 FLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIY 512 (824)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~ly 512 (824)
.+|..|++++++++||
T Consensus 148 ----------------------------------------------------------------~~r~~~~~~~~~~~iy 163 (301)
T 2vpj_A 148 ----------------------------------------------------------------TAREGAGLVVASGVIY 163 (301)
T ss_dssp ----------------------------------------------------------------SCCBSCEEEEETTEEE
T ss_pred ----------------------------------------------------------------CCcccceEEEECCEEE
Confidence 1345567777789999
Q ss_pred EEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc
Q psy17309 513 VIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE 592 (824)
Q Consensus 513 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 592 (824)
++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 99998877778999999999999999999999999999999999999999998776789999999999999999999999
Q ss_pred cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC
Q psy17309 593 RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH 649 (824)
Q Consensus 593 r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (824)
|..|++++++++||++||.++....+++++||+++++|+.+++||.+|..|+++.++
T Consensus 244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence 999999999999999999987777789999999999999999999999999998764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=386.81 Aligned_cols=287 Identities=21% Similarity=0.392 Sum_probs=256.0
Q ss_pred cCCCCC---CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC--C----Cccc
Q psy17309 453 ARPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD--G----NEYY 523 (824)
Q Consensus 453 ~~~r~~---~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~--~----~~~~ 523 (824)
.+||.. .+.|+++||. .+++|||.+++|... ..+.+.+|..|+++..+++||++||.. . ....
T Consensus 6 ~~~r~~~~~~~~i~~~GG~-------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 6 DIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp SSCCCCCSEEEEEEEECSS-------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred ccccccceecchhhhcccc-------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 345655 4689999993 489999999999983 344567899999999999999999953 1 1224
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEeccc--CCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN--GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
+++++||+.+++|+.++++|.+|..|++++++++||++||.. +...++++++||+.+++|+.++++|.+|.+|+++++
T Consensus 78 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp BEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred ccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 569999999999999999999999999999999999999986 445678999999999999999999999999999999
Q ss_pred CCEEEEEcccC-CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 602 QGKIYITGGFN-GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 602 ~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
+++|||+||.+ +....+++++||+.+++|+.++++|.+|..|++++++++|||+||.+.....+++++||+.+++|+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 99999999984 34568999999999999999999999999999999999999999987766688999999999999999
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCC---------ceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCcccee
Q psy17309 681 PDMYNPRSNFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
+++|.+|..|++++++++||++||.+.. ...+++++||+++++|+.+ +|.+|..|+++++++++|++
T Consensus 238 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~ 313 (318)
T 2woz_A 238 TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLF 313 (318)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGG
T ss_pred CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEE
Confidence 9999999999999999999999998652 3467899999999999999 88999999999999999986
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=380.32 Aligned_cols=282 Identities=23% Similarity=0.373 Sum_probs=247.7
Q ss_pred cEEEEEccCCCCCCCcceEEEECCCCcEEeeccCCCCCCcCeEEEEEECCEEEEEccCC------CCcccceEEEEEccC
Q psy17309 46 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD------GNEYYNSCRCFNAVT 119 (824)
Q Consensus 46 ~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~~~~~yv~GG~~------~~~~~~~~~~~~~~~ 119 (824)
+.|++||| ++++.||+.+++|.. +.++.|.+|.+|++++++++||||||.. .....+++++||+.+
T Consensus 5 ~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 5 DLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred eEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 57999999 689999999999997 5666678999999999999999999951 224567899999999
Q ss_pred CceeEecccCCCcceeEEEEECCEEEEEcCcC---CCCCCCcEEEEECCCCeEEEeccccceeeccCCeEEEEcccCCce
Q psy17309 120 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN---GQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNE 196 (824)
Q Consensus 120 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i~v~GG~~~~~ 196 (824)
++|++++++|.+|.+|++++++++||||||.+ +...++++++||+.+++|+.++++
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--------------------- 135 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--------------------- 135 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC---------------------
T ss_pred CeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC---------------------
Confidence 99999999999999999999999999999975 345577888888888877655443
Q ss_pred eeceEEEEECCCCeEEEecccccCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhh
Q psy17309 197 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDN 276 (824)
Q Consensus 197 ~~~~~~~~~~~~~~W~~i~~~~~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~ 276 (824)
T Consensus 136 -------------------------------------------------------------------------------- 135 (315)
T 4asc_A 136 -------------------------------------------------------------------------------- 135 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHH
Q psy17309 277 VASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEE 356 (824)
Q Consensus 277 v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ 356 (824)
T Consensus 136 -------------------------------------------------------------------------------- 135 (315)
T 4asc_A 136 -------------------------------------------------------------------------------- 135 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhh
Q psy17309 357 IISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYD 436 (824)
Q Consensus 357 ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 436 (824)
T Consensus 136 -------------------------------------------------------------------------------- 135 (315)
T 4asc_A 136 -------------------------------------------------------------------------------- 135 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEee
Q psy17309 437 LELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGG 516 (824)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG 516 (824)
|.+|..|++++++++||++||
T Consensus 136 -----------------------------------------------------------p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 136 -----------------------------------------------------------PYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp -----------------------------------------------------------SSCCBSCEEEEETTEEEEECC
T ss_pred -----------------------------------------------------------CCcccceeEEEECCEEEEEeC
Confidence 235666778888899999999
Q ss_pred c-CCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCc
Q psy17309 517 F-DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSD 595 (824)
Q Consensus 517 ~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 595 (824)
. .+....+++++||+.+++|+.++++|.+|..|++++++++||++||.++...++++++||+.+++|+.++++|.+|..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 236 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS 236 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 8 556678999999999999999999999999999999999999999998777788999999999999999999999999
Q ss_pred eEEEEECCEEEEEcccCCC---------CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEec
Q psy17309 596 ASATTLQGKIYITGGFNGH---------NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 596 ~~~~~~~~~lyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
|++++++++|||+||.++. ...+++++||+++++|+.+ +|.+|..+++++++++||++..
T Consensus 237 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 237 LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEECGGGS
T ss_pred eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEEEEEe
Confidence 9999999999999998531 3468899999999999999 5677888999999999999865
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=373.83 Aligned_cols=289 Identities=21% Similarity=0.363 Sum_probs=247.1
Q ss_pred CCCCcCC---CcEEEEEccCCCCCCCcceEEEECCCCcEEeeccCCCCCCcCeEEEEEECCEEEEEccCC--C----Ccc
Q psy17309 38 IARPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD--G----NEY 108 (824)
Q Consensus 38 ~~~~r~~---~~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~~~~~yv~GG~~--~----~~~ 108 (824)
..+||.. .+.||+|||. +++.||+.+++|.. .+++.|.||.+|++++++++||||||.. . ...
T Consensus 5 ~~~~r~~~~~~~~i~~~GG~-------~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 76 (318)
T 2woz_A 5 NDIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPL 76 (318)
T ss_dssp CSSCCCCCSEEEEEEEECSS-------EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CC
T ss_pred cccccccceecchhhhcccc-------ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCc
Confidence 4456654 3699999992 48999999999998 4455568999999999999999999953 1 124
Q ss_pred cceEEEEEccCCceeEecccCCCcceeEEEEECCEEEEEcCcCC--CCCCCcEEEEECCCCeEEEeccccceeeccCCeE
Q psy17309 109 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG--QRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNI 186 (824)
Q Consensus 109 ~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i 186 (824)
.+++++||+.+++|++++++|.+|..|++++++++|||+||.+. ...++++++||+.+++|+.+++++
T Consensus 77 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------- 146 (318)
T 2woz_A 77 QSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP---------- 146 (318)
T ss_dssp CBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS----------
T ss_pred cccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC----------
Confidence 56799999999999999999999999999999999999999863 344677777777777776554432
Q ss_pred EEEcccCCceeeceEEEEECCCCeEEEecccccCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeec
Q psy17309 187 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLF 266 (824)
Q Consensus 187 ~v~GG~~~~~~~~~~~~~~~~~~~W~~i~~~~~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Y 266 (824)
T Consensus 147 -------------------------------------------------------------------------------- 146 (318)
T 2woz_A 147 -------------------------------------------------------------------------------- 146 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhh
Q psy17309 267 ERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEI 346 (824)
Q Consensus 267 t~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f 346 (824)
T Consensus 147 -------------------------------------------------------------------------------- 146 (318)
T 2woz_A 147 -------------------------------------------------------------------------------- 146 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCHHHHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHH
Q psy17309 347 VFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPI 426 (824)
Q Consensus 347 ~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (824)
T Consensus 147 -------------------------------------------------------------------------------- 146 (318)
T 2woz_A 147 -------------------------------------------------------------------------------- 146 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEE
Q psy17309 427 IIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAV 506 (824)
Q Consensus 427 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 506 (824)
.+|..|++++
T Consensus 147 ----------------------------------------------------------------------~~r~~~~~~~ 156 (318)
T 2woz_A 147 ----------------------------------------------------------------------IKVYGHNVIS 156 (318)
T ss_dssp ----------------------------------------------------------------------SCEESCEEEE
T ss_pred ----------------------------------------------------------------------CcccccEEEE
Confidence 2455566777
Q ss_pred ECCEEEEEeecC-CCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 507 IGYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 507 ~~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
.+++||++||.. +....+++++||+.+++|+.++++|.+|..|++++++++||++||.+.....+++++||+.+++|+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 888999999974 4456789999999999999999999999999999999999999998876677899999999999999
Q ss_pred ecCCCcccCceEEEEECCEEEEEcccCCC---------CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEe
Q psy17309 586 IAPMNVERSDASATTLQGKIYITGGFNGH---------NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 656 (824)
++++|.+|..|++++++++||++||.+.. ...+++++||+++++|+.+ +|.+|..|+++.++++||++.
T Consensus 237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 237 MTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFK 314 (318)
T ss_dssp CCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGG
T ss_pred CCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEEE
Confidence 99999999999999999999999998642 3478999999999999999 788999999999999999975
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=349.95 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=222.1
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECC--CCceEEeccCC-CCcceEEEEEECCEEEEEecc-c--
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAV--TKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGY-N-- 565 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~-- 565 (824)
.+++|.+|.++++++++++|||+||.++ +++++||+. +++|+.++++| .+|..|++++++++||++||. .
T Consensus 3 l~~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~ 78 (357)
T 2uvk_A 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNS 78 (357)
T ss_dssp SCCCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECT
T ss_pred CCCCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCC
Confidence 5678889999999999999999999764 479999998 49999999999 899999999999999999998 3
Q ss_pred --CCCCCCeEEEEeCCCCcEEeecCCC-cccCceEEEEECCEEEEEcccCCC----------------------------
Q psy17309 566 --GQRRQNSVEKYNYTENQWSLIAPMN-VERSDASATTLQGKIYITGGFNGH---------------------------- 614 (824)
Q Consensus 566 --~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~---------------------------- 614 (824)
....++++++||+.+++|+.+++|+ .+|.+|++++++++|||+||.+..
T Consensus 79 ~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp TSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 2345789999999999999999988 999999999999999999998643
Q ss_pred ------CcCCceEEEeCCCCeEEEcCCCCCCCcc-eEEEEECCEEEEEecCCCC-CccceEEEEeC--CCCCEEECCCCC
Q psy17309 615 ------NCLNSCEVYDPECNQWTLIEPMRHRRSG-VSCIAYHECIYVIGGFNGM-SRMCNGEKYNP--VTKTWSQVPDMY 684 (824)
Q Consensus 615 ------~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~--~~~~W~~~~~~p 684 (824)
..++++++||+.+++|+.++++|.+|.. ++++.++++|||+||.+.. ...+++++||+ .+++|+.++++|
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred ccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence 2468999999999999999999987655 9999999999999996543 34678999986 899999999887
Q ss_pred CC--CcceEEEEECCEEEEEccCCCC-----------------ceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCc
Q psy17309 685 NP--RSNFAIEVIDDMIFAIGGFNGV-----------------TTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745 (824)
Q Consensus 685 ~~--r~~~~~~~~~~~i~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 745 (824)
.+ |..+++++++++|||+||.+.. ..+.++++||+++++|+.++++|.+|..|++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 318 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS 318 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence 66 4577799999999999996422 2346899999999999999999999999999999999
Q ss_pred cceecccccc
Q psy17309 746 PNVYDYIHQH 755 (824)
Q Consensus 746 ~~~~~~~~~~ 755 (824)
+|++++....
T Consensus 319 i~v~GG~~~~ 328 (357)
T 2uvk_A 319 LLIIGGETAG 328 (357)
T ss_dssp EEEEEEECGG
T ss_pred EEEEeeeCCC
Confidence 9999776543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=342.15 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=223.4
Q ss_pred CCEEEEEccCCCCCCCceEEEEECC--CCcEEEcccCCCC-CCCceeEEEEECCEEEEEeec-C----CCcccceEEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTR--ADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGF-D----GNEYYNSCRCFN 530 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~-~----~~~~~~~~~~yd 530 (824)
.+.||++||... +++++||+. +++|.. .+++| .+|..|++++++++|||+||. . .....+++++||
T Consensus 19 ~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~--~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 19 NDTVYIGLGSAG----TAWYKLDTQAKDKKWTA--LAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp TTEEEEECGGGT----TCEEEEETTSSSCCEEE--CCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEE
T ss_pred CCEEEEEeCcCC----CeEEEEccccCCCCeeE--CCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEe
Confidence 567999999753 479999998 499999 45677 799999999999999999998 3 234578999999
Q ss_pred CCCCceEEeccCC-CCcceEEEEEECCEEEEEecccCC----------------------------------CCCCeEEE
Q psy17309 531 AVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQ----------------------------------RRQNSVEK 575 (824)
Q Consensus 531 ~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~ 575 (824)
+.+++|+.+++++ .+|..|++++.+++||++||.+.. ..++++++
T Consensus 93 ~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 9999999999998 899999999999999999997632 24689999
Q ss_pred EeCCCCcEEeecCCCcccCc-eEEEEECCEEEEEcccCCC-CcCCceEEEeC--CCCeEEEcCCCCCC--CcceEEEEEC
Q psy17309 576 YNYTENQWSLIAPMNVERSD-ASATTLQGKIYITGGFNGH-NCLNSCEVYDP--ECNQWTLIEPMRHR--RSGVSCIAYH 649 (824)
Q Consensus 576 yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~--~~~~W~~~~~~p~~--r~~~~~~~~~ 649 (824)
||+.+++|+.++++|.+|.. |++++++++|||+||.+.. ...+++++||+ ++++|+.++++|.+ |..|++++++
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence 99999999999999987655 9999999999999998643 35788999976 99999999988665 5578899999
Q ss_pred CEEEEEecCCC-----------------CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc-ee
Q psy17309 650 ECIYVIGGFNG-----------------MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT-TI 711 (824)
Q Consensus 650 ~~iyv~GG~~~-----------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~ 711 (824)
++|||+||.+. ...+.++++||+.+++|+.++++|.+|..|+++.++++|||+||.+... .+
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAV 332 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEE
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEe
Confidence 99999999532 2234689999999999999999999999999999999999999987654 47
Q ss_pred eEEEEEECCCCcEEeccCCCCC
Q psy17309 712 YHVECYDEKTDEWYEATDMNIY 733 (824)
Q Consensus 712 ~~v~~yd~~~~~W~~~~~~p~~ 733 (824)
+++++|+.++++|....+.|..
T Consensus 333 ~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp EEEEEEEC-CCSCEEEC-----
T ss_pred eeEEEEEEcCcEeEeeeccccc
Confidence 8999999999999998776643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=356.40 Aligned_cols=222 Identities=17% Similarity=0.264 Sum_probs=174.7
Q ss_pred CCceeEEEEE-CCEEEEEee-cCCCcccceEEEEECCCCceEEe-----ccCCCCcceEEEEEECCEEEEEecccCC---
Q psy17309 498 PRAYHGTAVI-GYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEI-----APMNFKRCYVSTAVHQDVIYAMGGYNGQ--- 567 (824)
Q Consensus 498 ~r~~~~~~~~-~~~lyv~GG-~~~~~~~~~~~~yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~--- 567 (824)
+|..|+++++ +++||++|| .++....+++++||+.+++|+.+ .+|+.+|.. +++..++++|++||.++.
T Consensus 286 ~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~ 364 (656)
T 1k3i_A 286 ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQ 364 (656)
T ss_dssp CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEE
T ss_pred cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEE
Confidence 4556677777 889999999 45556778999999999999998 456666553 555679999999998643
Q ss_pred -CCCCeEEEEeCCCCcEEeec-CCCc------ccCceEEEE---ECCEEEEEcccCC---CCcCC---ceEEEeCCCCeE
Q psy17309 568 -RRQNSVEKYNYTENQWSLIA-PMNV------ERSDASATT---LQGKIYITGGFNG---HNCLN---SCEVYDPECNQW 630 (824)
Q Consensus 568 -~~~~~~~~yd~~t~~W~~~~-~~p~------~r~~~~~~~---~~~~lyv~GG~~~---~~~~~---~v~~yd~~~~~W 630 (824)
...++++.||+.++.|.... ..+. ++..++++. .+++|||+||.+. ...++ ++++||+.+++|
T Consensus 365 ~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 365 AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp CCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 34689999999999987542 2222 234445553 4899999999643 23344 789999999999
Q ss_pred EEcC--CCCCCCcceEEEEE-CCEEEEEecCCC------CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEE
Q psy17309 631 TLIE--PMRHRRSGVSCIAY-HECIYVIGGFNG------MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMI 699 (824)
Q Consensus 631 ~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 699 (824)
+.+. +||.+|..|+++.+ +++|||+||.+. .....++++||+.+++|+.++++|.+|..|+++++ +++|
T Consensus 445 ~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v 524 (656)
T 1k3i_A 445 TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRV 524 (656)
T ss_dssp EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCE
T ss_pred eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEE
Confidence 9986 99999999999888 999999999642 34578899999999999999999999999998888 9999
Q ss_pred EEEccCCCC---ceeeEEEEEECC
Q psy17309 700 FAIGGFNGV---TTIYHVECYDEK 720 (824)
Q Consensus 700 ~v~GG~~~~---~~~~~v~~yd~~ 720 (824)
|++||.... ...-++++|.|.
T Consensus 525 ~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 525 FNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp EEEECCCCTTCSCCCCEEEEEECG
T ss_pred EecCCCCCCCCCCCeeEEEEEeCh
Confidence 999996322 123467888875
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=363.12 Aligned_cols=319 Identities=11% Similarity=0.087 Sum_probs=251.7
Q ss_pred HHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCc---hhHHHHHHHHHHhhhhhhhhccCCCCCCCCccC
Q psy17309 378 WIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP---ECRPIIIETFKFLYDLELIAQIDGEVPTPEIAR 454 (824)
Q Consensus 378 W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (824)
|+.++...|.+.++.++++++++++.+.++.......+.+..++ .|.+.
T Consensus 315 ~~~~~e~~R~~~lE~ldE~e~~~l~~~hY~~~~a~~~~~~~~~~~~~~~~~~---------------------------- 366 (695)
T 2zwa_A 315 SADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSI---------------------------- 366 (695)
T ss_dssp HSCHHHHHHHHHHSCCCCHHHHHHHHHTEEEEEEESCTTCCCCTTTCCCC------------------------------
T ss_pred hCCHHHHHHHHhccccchHHHHHHhhccEEEEEEecCCccccCcccCCCCcc----------------------------
Confidence 88888888999999999998888777766655444443332222 11000
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCC
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTK 534 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~ 534 (824)
... .+ -.....+|.. .+..|.+|.++ ++++++.|||+||..+ ...+++++||+.++
T Consensus 367 --~~~------------~~------~~~~~~~~~~--~~~~p~rr~g~-~~~~~~~iyv~GG~~~-~~~~~v~~yd~~~~ 422 (695)
T 2zwa_A 367 --SEI------------NL------TVDEDYQLLE--CECPINRKFGD-VDVAGNDVFYMGGSNP-YRVNEILQLSIHYD 422 (695)
T ss_dssp ----C------------CC------EECSSEEEEE--CCCTTCCBSCE-EEECSSCEEEECCBSS-SBCCCEEEEEECSS
T ss_pred --ccc------------cC------CCCCceeEec--cCCCCCCceeE-EEEECCEEEEECCCCC-CCcCcEEEEECCCC
Confidence 000 00 0112223443 33445555554 4448999999999877 77899999999999
Q ss_pred ceEEec-c-----CCCCcceEEEEEE--CCEEEEEecccCCC-CCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCE
Q psy17309 535 VWKEIA-P-----MNFKRCYVSTAVH--QDVIYAMGGYNGQR-RQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGK 604 (824)
Q Consensus 535 ~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~ 604 (824)
+|+.++ + +|.+|.+|+++++ +++||++||.++.. .++++++||+.+++|+.+++||.+|.+|+++++ +++
T Consensus 423 ~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~ 502 (695)
T 2zwa_A 423 KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGN 502 (695)
T ss_dssp CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSC
T ss_pred eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCE
Confidence 999998 5 7899999999999 99999999987644 689999999999999999999999999999997 999
Q ss_pred EEEEcccCCCCcCCceEEEeCCCCeEEEcCC---CCCCCcceEEEEEC---CEEEEEecCCCC--CccceEEEEeCCCCC
Q psy17309 605 IYITGGFNGHNCLNSCEVYDPECNQWTLIEP---MRHRRSGVSCIAYH---ECIYVIGGFNGM--SRMCNGEKYNPVTKT 676 (824)
Q Consensus 605 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~---~~iyv~GG~~~~--~~~~~v~~yd~~~~~ 676 (824)
|||+||.+... ++++||+.+++|+.+++ +|.+|.+|++++++ ++|||+||.+.. ..++++++||+.+++
T Consensus 503 iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 503 VLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 99999987654 99999999999999986 89999999988876 899999997543 457899999999999
Q ss_pred ------EEECCCC-CCCCcceEEEEEC-CEEEEEccCCCCc---eeeEEEEEECCCCcEEeccCCCC--------Cccce
Q psy17309 677 ------WSQVPDM-YNPRSNFAIEVID-DMIFAIGGFNGVT---TIYHVECYDEKTDEWYEATDMNI--------YRSAL 737 (824)
Q Consensus 677 ------W~~~~~~-p~~r~~~~~~~~~-~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~--------~r~~~ 737 (824)
|+.+.++ +.+|..|++++++ ++|||+||.+... ..+++++||+.+++|+.+ ++|. .+.+|
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p~~~~~~~~p~~~gh 658 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI-PISRRIWEDHSLMLAGF 658 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCCHHHHHHSCCCCSSC
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe-eccccccCCCCccceee
Confidence 8998775 5899999999999 9999999986543 478899999999999965 2222 45678
Q ss_pred eEEEEcC-ccceeccc
Q psy17309 738 SACVIMG-LPNVYDYI 752 (824)
Q Consensus 738 ~~~~~~~-~~~~~~~~ 752 (824)
+++++++ ++|++++.
T Consensus 659 ~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 659 SLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEECC---CEEEECCE
T ss_pred eEEEeCCCEEEEEeCC
Confidence 8888877 88888653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=328.45 Aligned_cols=259 Identities=15% Similarity=0.147 Sum_probs=220.2
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcc-c---CCCCCCCceeEEEEE--CCEEEEEeecCCCc-ccceEEEEEC
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKID-Q---VDPMGPRAYHGTAVI--GYNIYVIGGFDGNE-YYNSCRCFNA 531 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~-~---~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~yd~ 531 (824)
.+.|+++||... ...+++++||+.+++|..++ . ..+|.+|.+|+++++ +++|||+||.+... ..+++++||+
T Consensus 397 ~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467999999877 77789999999999999976 3 248889999999999 99999999987644 6899999999
Q ss_pred CCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC---CCcccCceEEEEEC---CE
Q psy17309 532 VTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP---MNVERSDASATTLQ---GK 604 (824)
Q Consensus 532 ~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~---~~ 604 (824)
.+++|+.++++|.+|..|+++++ +++||++||.+... ++++||+.+++|+.+++ +|.+|.+|++++++ ++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 99999999999999999999997 99999999987554 89999999999999986 99999999988886 89
Q ss_pred EEEEcccCC--CCcCCceEEEeCCCCe------EEEcCCC-CCCCcceEEEEEC-CEEEEEecCCCCC---ccceEEEEe
Q psy17309 605 IYITGGFNG--HNCLNSCEVYDPECNQ------WTLIEPM-RHRRSGVSCIAYH-ECIYVIGGFNGMS---RMCNGEKYN 671 (824)
Q Consensus 605 lyv~GG~~~--~~~~~~v~~yd~~~~~------W~~~~~~-p~~r~~~~~~~~~-~~iyv~GG~~~~~---~~~~v~~yd 671 (824)
|||+||... ...++++++||+.+++ |+.+.++ +.+|.+|++++++ ++|||+||.+... ..+++++||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 999999854 3567999999999999 9999876 5889999999999 9999999976543 478999999
Q ss_pred CCCCCEEECCCC-------CCCCcceEEEEECC-EEEEEccCC----CCceeeEEEEEECCC
Q psy17309 672 PVTKTWSQVPDM-------YNPRSNFAIEVIDD-MIFAIGGFN----GVTTIYHVECYDEKT 721 (824)
Q Consensus 672 ~~~~~W~~~~~~-------p~~r~~~~~~~~~~-~i~v~GG~~----~~~~~~~v~~yd~~~ 721 (824)
+.+++|+.++-. +..+.+|+++++++ +|||+||.. -+...+.+|.+|..+
T Consensus 633 ~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp TTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred CCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 999999976321 12456788888766 999999953 234556788887654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=333.08 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=231.6
Q ss_pred CCEEEEEccCCCCC------CCceEEEEECCCCcEEEcccCCCCCCCcee--EEEE-ECCEEEEEeecCCCcccceEEEE
Q psy17309 459 HEILFAIGGWSGGS------PTDFVETYDTRADRWVKIDQVDPMGPRAYH--GTAV-IGYNIYVIGGFDGNEYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~--~~~~-~~~~lyv~GG~~~~~~~~~~~~y 529 (824)
.+.|+++||..... ....+++||+.+++|..++. ++.+|..+ ++++ .+++||++||.+. .++++|
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~--~~~~~~~~~~~~~~~~~g~lyv~GG~~~----~~v~~y 270 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV--TVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLY 270 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE--EECSCCCSSCEEEECTTSCEEEECSSST----TCEEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc--cCCCCCCccccccCCCCCCEEEeCCCCC----CceEEe
Confidence 46899999975432 23478999999999998543 44444443 4444 4899999999754 379999
Q ss_pred ECCCCceEEeccCCCCcceEEEEEE-CCEEEEEec-ccCCCCCCeEEEEeCCCCcEEee-----cCCCcccCceEEEEEC
Q psy17309 530 NAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGG-YNGQRRQNSVEKYNYTENQWSLI-----APMNVERSDASATTLQ 602 (824)
Q Consensus 530 d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~~~~yd~~t~~W~~~-----~~~p~~r~~~~~~~~~ 602 (824)
|+.+++|..+++|+.+|..|+++++ +++||++|| .++...++++++||+.+++|+.+ .+|+..|.. +++..+
T Consensus 271 d~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~ 349 (656)
T 1k3i_A 271 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSD 349 (656)
T ss_dssp EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTT
T ss_pred cCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecC
Confidence 9999999999999999999999999 999999999 45556788999999999999997 566666654 556679
Q ss_pred CEEEEEcccCCC----CcCCceEEEeCCCCeEEEcC-CCCC------CCcceEEEE---ECCEEEEEecCCC---CCccc
Q psy17309 603 GKIYITGGFNGH----NCLNSCEVYDPECNQWTLIE-PMRH------RRSGVSCIA---YHECIYVIGGFNG---MSRMC 665 (824)
Q Consensus 603 ~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~-~~p~------~r~~~~~~~---~~~~iyv~GG~~~---~~~~~ 665 (824)
+++|++||.++. ...++++.||+.+++|.... ..+. ++..++++. .+++||++||.+. ...++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 999999998754 34688999999999987543 2221 234455553 4899999999642 22344
Q ss_pred ---eEEEEeCCCCCEEECC--CCCCCCcceEEEEE-CCEEEEEccCCC------CceeeEEEEEECCCCcEEeccCCCCC
Q psy17309 666 ---NGEKYNPVTKTWSQVP--DMYNPRSNFAIEVI-DDMIFAIGGFNG------VTTIYHVECYDEKTDEWYEATDMNIY 733 (824)
Q Consensus 666 ---~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~ 733 (824)
.+++||+.+++|+.+. +||.+|..++++++ +++|||+||.+. .....++++|||++++|+.++++|.+
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 7899999999999986 99999999999888 999999999752 24567899999999999999999999
Q ss_pred ccceeEEEE--cCccceeccc
Q psy17309 734 RSALSACVI--MGLPNVYDYI 752 (824)
Q Consensus 734 r~~~~~~~~--~~~~~~~~~~ 752 (824)
|..|+++++ +++++++++.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 999999988 9999998764
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-32 Score=285.96 Aligned_cols=218 Identities=19% Similarity=0.340 Sum_probs=202.3
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEe------eecccchhhhheeecccceecCHhhHHHHHHHHhhcChH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKY------NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMS 290 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~------~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~ 290 (824)
..+.|+..+++++.+|.+| .+.+.|+.+..|+++ ++++++|+.+++|+|||++.++.+++.+|+.+|++|+++
T Consensus 46 ~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~ 125 (279)
T 3i3n_A 46 EFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLI 125 (279)
T ss_dssp EEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCH
T ss_pred EEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcH
Confidence 3567778888999999998 677888999999999 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHH
Q psy17309 291 KAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEET 370 (824)
Q Consensus 291 ~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~ 370 (824)
.|++.|++||.+.++++||+.++.+|+.|++..|.+.|.+|+.+||.++. .+++|++|+.+.+..+|++|.|++.+|+.
T Consensus 126 ~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~-~~~~f~~L~~~~l~~lL~~d~L~v~sE~~ 204 (279)
T 3i3n_A 126 RLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVI-QDEEFYTLPFHLIRDWLSDLEITVDSEEV 204 (279)
T ss_dssp HHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHT-TSSGGGGSCHHHHHHHHTCSSCCCSCHHH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-cCcChhcCCHHHHHHHhcCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999 78899999999999999999999999999
Q ss_pred HHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhh
Q psy17309 371 VWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYD 436 (824)
Q Consensus 371 v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 436 (824)
||+++++|+++++++|.+++.+||++|||++|+++++.+.+...+++..++.|.+++.++++++..
T Consensus 205 vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~~~~~~ 270 (279)
T 3i3n_A 205 LFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHAL 270 (279)
T ss_dssp HHHHHHHHHHTTHHHHTTTHHHHHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999998864
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=280.38 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=178.0
Q ss_pred ccCcceeeeeeecceEEEE-ccccc--ccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNG--QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~--e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~ 294 (824)
..+.|+..+++++.+|++| .+.+. ++.+..|+++++++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++
T Consensus 42 ~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~ 121 (256)
T 3hve_A 42 EIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121 (256)
T ss_dssp EEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHH
T ss_pred EEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHH
Confidence 4577788888899999988 45554 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHH
Q psy17309 295 LCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWEL 374 (824)
Q Consensus 295 ~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~a 374 (824)
.|++||.+.++++||+.++.+|+.|++.+|.+.|.+|+.+||.++. .+++|.+|+.+.+..+|++|.|+|.+|+.||++
T Consensus 122 ~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~-~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~a 200 (256)
T 3hve_A 122 LCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVS-STEEFLELSPQKLKEVISLEKLNVGNERYVFEA 200 (256)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-TCHHHHSSCHHHHHHHHHCC-------CTTHHH
T ss_pred HHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-CCcchhcCCHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 788999999999999999999999999999999
Q ss_pred HHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCC-chhHHHHH
Q psy17309 375 IIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQST-PECRPIII 428 (824)
Q Consensus 375 v~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~ 428 (824)
+++|++|++++|.+++.+||++|||+++++.++.+.+..++++... ++|++++.
T Consensus 201 v~~W~~~~~~~R~~~~~~ll~~VRf~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~ 255 (256)
T 3hve_A 201 VIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPL 255 (256)
T ss_dssp HTTTCCC--CCSTTTHHHHHHHHHHHTTCC-CHHHHHHTSTTHHHHHCC------
T ss_pred HHHHHHcCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhcChHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988 78988764
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=149.66 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=92.1
Q ss_pred HhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHHHHH
Q psy17309 300 IKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWI 379 (824)
Q Consensus 300 l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~ 379 (824)
++++++++||+.++.+|+.|++++|.++|.+|+.+||.+++ ++++|++|+.++|..+|++| +.+|+.||+|+++|+
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~-~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv 79 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQ-NTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWI 79 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHH-TSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999 78999999999999999998 889999999999999
Q ss_pred hcCccchHHHHHHhhhhccC
Q psy17309 380 DYDPENRKKHIVSLMKNIRL 399 (824)
Q Consensus 380 ~~~~~~r~~~~~~ll~~vr~ 399 (824)
+||+++|.+++++||++||.
T Consensus 80 ~~d~~~R~~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 80 NFNKEEREAFAESLRTSLKE 99 (105)
T ss_dssp HTTHHHHHHHHHHHHHHCCE
T ss_pred HcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-17 Score=154.95 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=112.1
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
.+.|+..+++++.+|..| .+.+.|..+..|+++++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|+
T Consensus 46 ~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 125 (172)
T 3htm_A 46 FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCE 125 (172)
T ss_dssp EEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 566777888889999888 6667888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHc
Q psy17309 298 DFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVAR 341 (824)
Q Consensus 298 ~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~ 341 (824)
+||.+.++.+||+.++.+|+.|++.+|++.|.+||.+||.++.+
T Consensus 126 ~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 169 (172)
T 3htm_A 126 DALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 169 (172)
T ss_dssp HHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999873
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-15 Score=159.69 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=108.5
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++++.+|.+| .+.+.|+.+.+|+++++++++|+.+|+|+||+++.++.+++.+|+.+|++|+++.|++.|
T Consensus 185 ~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c 264 (312)
T 3hqi_A 185 EFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMC 264 (312)
T ss_dssp EEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3567777888889999888 677888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy17309 297 CDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVA 340 (824)
Q Consensus 297 ~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~ 340 (824)
+++|.+.++.+||+.++.+|+.|++..|+++|.+||..||.+|.
T Consensus 265 ~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~ 308 (312)
T 3hqi_A 265 EDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVL 308 (312)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC----
T ss_pred HHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-15 Score=135.54 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
.+.|+..+++++.+|..| .+.+.|+.+..|+++++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|+
T Consensus 37 ~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 116 (145)
T 4eoz_A 37 FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCE 116 (145)
T ss_dssp EEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 466777788888888888 5667788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHHcCCHHHHH
Q psy17309 298 DFIKRLTTPRNCFGILLFSRDHFCKKLEE 326 (824)
Q Consensus 298 ~~l~~~l~~~N~~~i~~~a~~~~~~~L~~ 326 (824)
+||.+.++.+||+.++.+|+.|++.+|++
T Consensus 117 ~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 117 DALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp CC---------------------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 99999999999999999999999998864
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-11 Score=107.95 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=73.0
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++++.+|.+| .+.+.|+. ..|+++++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.|
T Consensus 23 ~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c 101 (109)
T 2vkp_A 23 TVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKAC 101 (109)
T ss_dssp EEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3566777788888888888 66667777 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy17309 297 CDFIKRLT 304 (824)
Q Consensus 297 ~~~l~~~l 304 (824)
.+||.+++
T Consensus 102 ~~~l~~~l 109 (109)
T 2vkp_A 102 VNFLETSL 109 (109)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99998764
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-11 Score=106.92 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=65.8
Q ss_pred eeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 225 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 225 ~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
.+.+|+.++.+.+.||.. .+..|+++++++++|+.+|+|+|||++.++.+|+++|+.+|++||++.|++.|+++++.
T Consensus 41 ~f~aHk~vLaa~S~yF~~-~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 41 EFPAHSLVLAGVSQQLGR-RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EEEECHHHHHTTCGGGCC-CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred EEeeEHHHHHHcCHHHhc-CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345666666666666654 56789999999999999999999999999999999999999999999999999998875
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-11 Score=106.96 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=72.1
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++++.+|.+| .+.+.|+.+..|+++++++++|+.+++|+|||++.++.+++.+|+.+|++|+++.|++.|
T Consensus 36 ~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C 115 (120)
T 2if5_A 36 EFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVC 115 (120)
T ss_dssp EEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHH
T ss_pred EEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566777788888888887 666778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy17309 297 CDFIK 301 (824)
Q Consensus 297 ~~~l~ 301 (824)
++||.
T Consensus 116 ~~~L~ 120 (120)
T 2if5_A 116 ADLLD 120 (120)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99984
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-11 Score=110.12 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEe-eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKY-NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~-~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
..+.|+..+++++.+|.+| .+.+.+ ...|.++ ++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.
T Consensus 47 ~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~ 124 (138)
T 2z8h_A 47 RFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124 (138)
T ss_dssp EEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHH
T ss_pred EEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3456666677777777776 344433 3578885 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcch
Q psy17309 296 CCDFIKRLTTPRN 308 (824)
Q Consensus 296 c~~~l~~~l~~~N 308 (824)
|++||.++++.+|
T Consensus 125 C~~~l~~~l~~sn 137 (138)
T 2z8h_A 125 CFQFLKFKFLDST 137 (138)
T ss_dssp HHHHTTCCCSCCC
T ss_pred HHHHHHHhccccc
Confidence 9999999999887
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-11 Score=106.51 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=75.5
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEE-eeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEK-YNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l-~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
..+.|+..+++++.+|.+| .+.+.| .+..|++ +++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.
T Consensus 40 ~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~ 118 (127)
T 1r29_A 40 QFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118 (127)
T ss_dssp EEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHH
T ss_pred EEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566777788888888888 555666 7789999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy17309 296 CCDFIKRL 303 (824)
Q Consensus 296 c~~~l~~~ 303 (824)
|++||.++
T Consensus 119 c~~~l~~~ 126 (127)
T 1r29_A 119 CRKFIKAS 126 (127)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999764
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-11 Score=108.23 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=65.9
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
.+.|+..+++++.+|.+| .+.+ +..|+++++++++|+.+|+|||||++.++.+|+.+|+.+|++|+++.|++.|+
T Consensus 37 f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~ 112 (135)
T 2yy9_A 37 FKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQ 112 (135)
T ss_dssp EEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred EehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 445555566666666665 2222 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcc
Q psy17309 298 DFIKRLTTPR 307 (824)
Q Consensus 298 ~~l~~~l~~~ 307 (824)
+||.+.+...
T Consensus 113 ~~l~~~l~~~ 122 (135)
T 2yy9_A 113 SFQPQTSVGQ 122 (135)
T ss_dssp HCCC------
T ss_pred HHHHHhccCC
Confidence 9999887644
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-11 Score=104.56 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=67.1
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
.+.|+..+++++.+|.+| .+. .+..|+++++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.|+
T Consensus 36 f~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~ 111 (119)
T 3b84_A 36 FKAHWSVLACCSHFFQSLYGDG----SGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQ 111 (119)
T ss_dssp EEECHHHHHHHCHHHHHHHTTT----TCCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeeHHHHhhcCHHHHHHHCCC----CCCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 455556666667777666 222 267899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy17309 298 DFIKRL 303 (824)
Q Consensus 298 ~~l~~~ 303 (824)
+||.+.
T Consensus 112 ~~l~~~ 117 (119)
T 3b84_A 112 SFKPKT 117 (119)
T ss_dssp HCC---
T ss_pred HHHHHc
Confidence 998764
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-10 Score=107.47 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=71.0
Q ss_pred ccCcceeeeeeecceEEEE-cccccc--cccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQ--RRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e--~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~ 294 (824)
..+.++..+++.+.+|.+| .+.+.+ +.+..|.++++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++
T Consensus 58 ~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~ 137 (144)
T 2ppi_A 58 EIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 137 (144)
T ss_dssp EEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred EEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 3466667777888888877 444443 6778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy17309 295 LCCDFIK 301 (824)
Q Consensus 295 ~c~~~l~ 301 (824)
.|++||+
T Consensus 138 ~C~~~L~ 144 (144)
T 2ppi_A 138 LCCEFLE 144 (144)
T ss_dssp HHHTTC-
T ss_pred HHHHHhC
Confidence 9999874
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-10 Score=101.27 Aligned_cols=82 Identities=10% Similarity=0.148 Sum_probs=67.7
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCD 298 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~ 298 (824)
.+.|+..+++++.+|.+|-. ..+..|+++++++++|+.+++|+|||++.++.+|+.+++.+|++|+++.|++.|++
T Consensus 40 f~aHk~vLaa~S~yF~~~f~----~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 115 (121)
T 1buo_A 40 FHAHRTVLACTSKMFEILFH----RNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK 115 (121)
T ss_dssp EEECHHHHHHHCHHHHHHTT----SCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred EehhHHHHhhcCHHHHHHHc----CCCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 34455555555666555521 13568999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q psy17309 299 FIKRLT 304 (824)
Q Consensus 299 ~l~~~l 304 (824)
||.+.+
T Consensus 116 ~l~~~I 121 (121)
T 1buo_A 116 MLETIQ 121 (121)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998643
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-10 Score=101.29 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=67.2
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEe--eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKY--NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~--~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
.+.|+..+++++.+|.+| .+. .+..|+++ ++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.
T Consensus 34 ~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~ 109 (116)
T 2vpk_A 34 FKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109 (116)
T ss_dssp EEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHH
T ss_pred EeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455556666667776666 222 36778888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy17309 296 CCDFIKR 302 (824)
Q Consensus 296 c~~~l~~ 302 (824)
|++||++
T Consensus 110 C~~~l~~ 116 (116)
T 2vpk_A 110 CKIKMED 116 (116)
T ss_dssp HHHHHC-
T ss_pred HHHHHhC
Confidence 9999863
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-10 Score=100.13 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=63.8
Q ss_pred CcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHH
Q psy17309 220 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDF 299 (824)
Q Consensus 220 ~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~ 299 (824)
+.|+..+++++.+|.+|.. ..+..|.++++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.|++|
T Consensus 40 ~aHk~vLaa~S~yF~~~f~----~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~ 115 (119)
T 2q81_A 40 KAHKAVLAACSEYFKMLFV----DQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHAL 115 (119)
T ss_dssp EECHHHHHHHCHHHHHHHH----HCCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ehhHHHHHHcCHHHHHHHc----CCCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4444455555555555411 135678888999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q psy17309 300 IK 301 (824)
Q Consensus 300 l~ 301 (824)
|.
T Consensus 116 l~ 117 (119)
T 2q81_A 116 KS 117 (119)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-10 Score=103.68 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=61.4
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEe-eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY-NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~-~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
.+.|+..+++++.+|.+|... ..+..|+++ ++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.|+
T Consensus 45 ~~~Hk~vLaa~S~~F~~~f~~---~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~ 121 (129)
T 3ga1_A 45 FKAHRAVLAASSSYFRDLFNN---SRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGT 121 (129)
T ss_dssp EEECHHHHHHHBHHHHHHHHH---CCCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--
T ss_pred EEehHHHHHHcCHHHHHHHcC---CCCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345555666666666665111 166789997 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q psy17309 298 DFIKRLT 304 (824)
Q Consensus 298 ~~l~~~l 304 (824)
+||.+..
T Consensus 122 ~~L~~~~ 128 (129)
T 3ga1_A 122 EFFLKVS 128 (129)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9998753
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-10 Score=103.78 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=68.2
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEee-ecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYN-YTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~-~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
.+.|+..+++++.+|.+| .+.+.+ +..|.+++ +++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|
T Consensus 44 f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C 121 (125)
T 3ohu_A 44 FRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121 (125)
T ss_dssp EEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSS
T ss_pred EechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666777777777777 343433 67899998 99999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy17309 297 CDFI 300 (824)
Q Consensus 297 ~~~l 300 (824)
++||
T Consensus 122 ~~~L 125 (125)
T 3ohu_A 122 FSFL 125 (125)
T ss_dssp CCCC
T ss_pred HHhC
Confidence 8764
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-10 Score=101.76 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=66.3
Q ss_pred cCcceeeeeeecceEEEE-cccccccccceeEEe-eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKY-NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~-~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
.+.|+..+++++.+|.+| .+.+.+ +..|+++ ++++++|+.+|+|+|||++.++.+|+.+|+.+|++|+++.|++.|
T Consensus 41 ~~aHk~vLaa~S~yF~~mf~~~~~e--~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C 118 (124)
T 2ihc_A 41 FRAHRSVLAACSSYFHSRIVGQADG--ELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESC 118 (124)
T ss_dssp EEECHHHHHHHBHHHHHHHTTC-----CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGG
T ss_pred EecHHHHHHHcCHHHHHHHcCCCCC--CceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHH
Confidence 456666677777777776 444433 3578884 899999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy17309 297 CDFIK 301 (824)
Q Consensus 297 ~~~l~ 301 (824)
++||+
T Consensus 119 ~~~l~ 123 (124)
T 2ihc_A 119 FQFLK 123 (124)
T ss_dssp GGTC-
T ss_pred HHHHh
Confidence 99875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00035 Score=73.66 Aligned_cols=226 Identities=8% Similarity=-0.098 Sum_probs=138.5
Q ss_pred CCceEEEEECCCCcEEEcc---cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcce
Q psy17309 473 PTDFVETYDTRADRWVKID---QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCY 548 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~---~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~ 548 (824)
....+..+|+.+.++...- ....+.......++..++++|+.... .+.+.++|+.+.+- ..++.... -
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~---p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTS---P 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSS---E
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCC---C
Confidence 3578999999999886521 01223334456677789999999752 36799999998876 34543322 2
Q ss_pred EEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc----cCceEEEEECCEEEEEcccCCCCcCCceEEE
Q psy17309 549 VSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE----RSDASATTLQGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 549 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~----r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y 623 (824)
..++. .++++|+.... .+.+.++|+.+.+-...-+.+.. .....++..++++||..- ...+.+.++
T Consensus 87 ~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~----~~~~~v~vi 157 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW----SYQNRILKI 157 (328)
T ss_dssp EEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC----TTCCEEEEE
T ss_pred cEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC----CCCCEEEEE
Confidence 34444 68899998742 36899999999875432111110 022344557899999842 113679999
Q ss_pred eCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecCCCCCc-----cceEEEEeCCCCCEEECCCCCCCCcceEEEEE--
Q psy17309 624 DPECNQWTLIEPMRHRRSGVSCIA-YHECIYVIGGFNGMSR-----MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-- 695 (824)
Q Consensus 624 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~-----~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 695 (824)
|+.+++....-+.. ..-..++. -+|++|+......... ...+.++|+.+.+....-.++....-..++.-
T Consensus 158 D~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 158 DTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp ETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred ECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence 99998764432211 11122222 3688888764221111 36899999998876533233322223344444
Q ss_pred CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 696 DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 696 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
++.+|+..+ .++++|+++.+..
T Consensus 236 ~~~lyv~~~--------~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 236 RDTLYWINN--------DIWRMPVEADRVP 257 (328)
T ss_dssp SCEEEEESS--------SEEEEETTCSSCC
T ss_pred CCEEEEEcc--------EEEEEECCCCcee
Confidence 567888754 6889999987753
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-08 Score=86.05 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=58.9
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccce-ecCHhhHHHHHHHHhhcChHhHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKL-HITEDNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l-~l~~~~v~~ll~~a~~~~i~~l~~ 294 (824)
.+.|+..+++++.+|.+|... .+..|+++++++++|+.+++|+|||++ .++.+++.+++.+|++|+++.|++
T Consensus 43 f~aHk~vLaa~S~~F~~~f~~----~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 43 FRAHKNILSASSTYFHQLFSV----AGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp EEECHHHHHHHCHHHHHHTTS----CCSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred EehhHHHHHHcCHHHHHHHcC----CCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 445555566666666655211 267899999999999999999999999 799999999999999999999874
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0014 Score=64.58 Aligned_cols=184 Identities=13% Similarity=0.068 Sum_probs=123.1
Q ss_pred ceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 500 AYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 500 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
.-+++...++.||+..|..+. +.+..+|+.+++-..--+++..-.+.+++..+++||+.... .+.+++||+.
T Consensus 22 ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~ 93 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLA 93 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETT
T ss_pred ccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECC
Confidence 345777789999999996543 67999999999877666777666778888899999998653 4789999998
Q ss_pred CCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC--CCCCCCcc-eEEEEECCEEEEE
Q psy17309 580 ENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE--PMRHRRSG-VSCIAYHECIYVI 655 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~~p~~r~~-~~~~~~~~~iyv~ 655 (824)
+.+- +..++.+..+.+++.-+++||+.-| .+.+..+||++.+-.. +. .-+.+... -.+...+|+||+-
T Consensus 94 tl~~--~~ti~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTP--RARFRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEE--EEEEECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcE--EEEEeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 8763 3333334456777766788999755 3579999999876432 21 12222222 2344569999965
Q ss_pred ecCCCCCccceEEEEeCCCCC---EEECCCCCC-------CC--cceEEEEE--CCEEEEEcc
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKT---WSQVPDMYN-------PR--SNFAIEVI--DDMIFAIGG 704 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~-------~r--~~~~~~~~--~~~i~v~GG 704 (824)
--. .+.|.+.|+++.+ |-.++.+.. +. .--+++.. ++++||.|=
T Consensus 166 vw~-----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWL-----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETT-----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECC-----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 432 4789999999876 445443311 11 11233333 578888873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0025 Score=67.04 Aligned_cols=223 Identities=10% Similarity=-0.054 Sum_probs=130.1
Q ss_pred CceEEEEECCCCcEE-EcccCCCCCCCceeEEEE-ECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC----cc
Q psy17309 474 TDFVETYDTRADRWV-KIDQVDPMGPRAYHGTAV-IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK----RC 547 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~ 547 (824)
.+.+..+|+.+.+-. .++. ......+++ -++++|+.... .+.+.++|+.+.+-...-+.+.. ..
T Consensus 63 ~~~v~viD~~t~~~~~~i~~-----~~~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITG-----FTSPRYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp GTEEEEEETTTCCEEEEEEC-----CSSEEEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred CCEEEEEECcccEEEEEcCC-----CCCCcEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 357899999988763 3321 222344555 57899998742 36799999999875422121110 02
Q ss_pred eEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCC-----cCCceE
Q psy17309 548 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHN-----CLNSCE 621 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~-----~~~~v~ 621 (824)
-..++..++++|+..- ...+.+.++|+.+.+....-+.. ...+.++. -+|++|+....+... ..+.+.
T Consensus 133 p~~i~~~~~~lyv~~~----~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCW----SYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp CCCEEEETTEEEEEEC----TTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred cceEEEECCEEEEEcC----CCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence 2234447899999852 02368999999998764322211 11122333 368988875322111 136799
Q ss_pred EEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC-CCcceEEEE--EC
Q psy17309 622 VYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN-PRSNFAIEV--ID 696 (824)
Q Consensus 622 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~ 696 (824)
++|+.+.+....-.++.......++.. ++.+|+..+ .++++|+.+.+.....-.+. ...-.++++ -+
T Consensus 207 ~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 207 RIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp EEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred EEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 999999886543334433333344444 567888643 78999998877532222222 223334444 26
Q ss_pred CEEEEEccCCCCceeeEEEEEECCC
Q psy17309 697 DMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 697 ~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++||+....+- .....+.+||++.
T Consensus 279 g~lyva~~~~y-~~~~~V~v~d~~g 302 (328)
T 3dsm_A 279 GEVYVADAIDY-QQQGIVYRYSPQG 302 (328)
T ss_dssp CCEEEEECTTS-SSEEEEEEECTTC
T ss_pred CeEEEEccccc-ccCCEEEEECCCC
Confidence 88999862111 1235799999983
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.015 Score=62.25 Aligned_cols=249 Identities=14% Similarity=0.185 Sum_probs=140.9
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCC--cEEEcccCCCC-----CCCceeEEEEECCEEEEEeecCCCcccceEE
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRAD--RWVKIDQVDPM-----GPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 527 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~-----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 527 (824)
|-...+.+++... ...+.+||+.+. .|..-...... ......+.+..++.||+... ...++
T Consensus 49 p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~ 116 (376)
T 3q7m_A 49 PALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQVY 116 (376)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET------TSEEE
T ss_pred cEEECCEEEEEcC------CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC------CCEEE
Confidence 3334566666542 247899998765 47652111100 12233445556888888643 25799
Q ss_pred EEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEEE
Q psy17309 528 CFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATTL 601 (824)
Q Consensus 528 ~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~ 601 (824)
++|+.+++ |+.-..-. ...+.+..++.||+..+ ...++.+|+.+.+ |+.-...+. .+...+.+..
T Consensus 117 a~d~~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp EEETTTCCEEEEEECSSC---CCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred EEECCCCCEEEEEeCCCc---eEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence 99998876 76532211 11223456888887543 2479999998775 876543221 1222344555
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCC--------cceEEEEECCEEEEEecCCCCCccceEEEEe
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRR--------SGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 671 (824)
++.+|+ |..+ ..+..||+.+++ |+.-...|... .....+..++.+|+.+. ...+.++|
T Consensus 188 ~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d 255 (376)
T 3q7m_A 188 FGAAVV-GGDN-----GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALD 255 (376)
T ss_dssp TTEEEE-CCTT-----TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT------TSCEEEEE
T ss_pred CCEEEE-EcCC-----CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEE
Confidence 888776 3222 468899988764 77654332211 11233456888888653 24688999
Q ss_pred CCCC--CEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCccc
Q psy17309 672 PVTK--TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPN 747 (824)
Q Consensus 672 ~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~ 747 (824)
+.+. .|+.-.. ...+.+..++.||+.... ..+..+|+.+.+ |+.-. ++ .+...+.++.++.+|
T Consensus 256 ~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~~------g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~l~ 322 (376)
T 3q7m_A 256 LRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQN------DRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGNLV 322 (376)
T ss_dssp TTTCCEEEEECCC-----CEEEEEEETTEEEEEETT------CCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTEEE
T ss_pred CCCCcEEeeccCC-----CCCCceEECCEEEEEcCC------CeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCEEE
Confidence 9776 4775421 123455668899987532 258899998765 76531 11 122233445566666
Q ss_pred ee
Q psy17309 748 VY 749 (824)
Q Consensus 748 ~~ 749 (824)
+.
T Consensus 323 v~ 324 (376)
T 3q7m_A 323 VG 324 (376)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0034 Score=62.45 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=117.4
Q ss_pred eEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 502 HGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 502 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
.++...++.||+..|..+ .+.+..+|+.+++-..--+++..-.+.+++..+++||+.... .+.+++||+.+.
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTC
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECccC
Confidence 456666899999999654 267899999999876555565555666788899999999653 378999999887
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cCC--CCCCCcce-EEEEECCEEEEEec
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IEP--MRHRRSGV-SCIAYHECIYVIGG 657 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~--~p~~r~~~-~~~~~~~~iyv~GG 657 (824)
+-. ..++.+-.+.+++.-+++||+.-| .+.+..+||++.+-.. +.. -+.+.... .+...+|+||+---
T Consensus 118 ~~~--~ti~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 118 RQV--RSFNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp CEE--EEEECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred cEE--EEEECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 643 333333355666666778888654 3679999999876332 221 11121111 24455899996542
Q ss_pred CCCCCccceEEEEeCCCCC---EEECCCCCC------C--CcceEEEEE--CCEEEEEcc
Q psy17309 658 FNGMSRMCNGEKYNPVTKT---WSQVPDMYN------P--RSNFAIEVI--DDMIFAIGG 704 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~---W~~~~~~p~------~--r~~~~~~~~--~~~i~v~GG 704 (824)
. .+.|.+.|+++.+ |-.++.+.. + -.-.+++.- ++++||.|-
T Consensus 190 ~-----~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 Q-----TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp T-----SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred c-----CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 2 4789999999876 444443311 1 111233333 567888874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.012 Score=62.78 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=133.0
Q ss_pred ceEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--Ccce
Q psy17309 475 DFVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~ 548 (824)
..+.++|+.+.+ |..- .... ...+.++.++.+|+..+ ...++.+|+.+++ |+.-...+. .+..
T Consensus 113 g~l~a~d~~tG~~~W~~~--~~~~---~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTK--VAGE---ALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp SEEEEEETTTCCEEEEEE--CSSC---CCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CEEEEEECCCCCEEEEEe--CCCc---eEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 468899988664 6552 1111 11223445788887543 2469999998876 875443221 1122
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCccc--------CceEEEEECCEEEEEcccCCCCcCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVER--------SDASATTLQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~ 618 (824)
.+.+..++.||+. .. ...+..+|+.+.+ |+.-...|... .....+..++.+|+.+. ..
T Consensus 182 ~~~~~~~~~v~~g-~~-----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g 249 (376)
T 3q7m_A 182 SAPTTAFGAAVVG-GD-----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NG 249 (376)
T ss_dssp CCCEEETTEEEEC-CT-----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT------TS
T ss_pred CCcEEECCEEEEE-cC-----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec------Cc
Confidence 3345557887773 21 2468999998764 77543333211 22333456888888642 24
Q ss_pred ceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 694 (824)
.+.++|+.+++ |+.-. + ...+.+..++.||+.... ..+.++|+.+.+ |+.-. ++ .+...+.+.
T Consensus 250 ~l~~~d~~tG~~~w~~~~--~---~~~~~~~~~~~l~~~~~~------g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~ 316 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL--G---SVNDFIVDGNRIYLVDQN------DRVMALTIDGGVTLWTQSD-LL-HRLLTSPVL 316 (376)
T ss_dssp CEEEEETTTCCEEEEECC--C---CEEEEEEETTEEEEEETT------CCEEEEETTTCCEEEEECT-TT-TSCCCCCEE
T ss_pred EEEEEECCCCcEEeeccC--C---CCCCceEECCEEEEEcCC------CeEEEEECCCCcEEEeecc-cC-CCcccCCEE
Confidence 68999998764 76532 1 123455668999987642 468999998765 76632 11 222334455
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.++.||+... + ..++++|+++.+ |+.- ++........+..++.+|+.
T Consensus 317 ~~~~l~v~~~-~-----g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~~l~v~ 365 (376)
T 3q7m_A 317 YNGNLVVGDS-E-----GYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADGKLLIQ 365 (376)
T ss_dssp ETTEEEEECT-T-----SEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETTEEEEE
T ss_pred ECCEEEEEeC-C-----CeEEEEECCCCcEEEEEe--cCCCcceeCCEEECCEEEEE
Confidence 6888887642 1 268999998875 5432 22222223344557776664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0024 Score=62.98 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=110.5
Q ss_pred ceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 547 CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 547 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
.-.++...++.+|+-.|..+. +.+.++|+.+.+=..--+++..-.+.+++..+++||+.... .+.+.+||++
T Consensus 22 ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~ 93 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLA 93 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETT
T ss_pred ccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECC
Confidence 345778889999999886543 67999999999877666777777778888899999998643 3689999998
Q ss_pred CCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-C--CCCCCCCcc-eEEEEECCEEEEE
Q psy17309 627 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-V--PDMYNPRSN-FAIEVIDDMIFAI 702 (824)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~--~~~p~~r~~-~~~~~~~~~i~v~ 702 (824)
+.+- +..++.+..+.+.+.-+++||+.-| .+.+..+|+++.+-.. + ..-+.+... -.+...+++||+-
T Consensus 94 tl~~--~~ti~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTP--RARFRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEE--EEEEECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcE--EEEEeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 8653 3333444466777777888999876 3689999999865322 2 112222111 2344558999865
Q ss_pred ccCCCCceeeEEEEEECCCCcE
Q psy17309 703 GGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (824)
-- ..++|.+.||++.+=
T Consensus 166 vw-----~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 166 VW-----LTSRIARIDPASGKV 182 (243)
T ss_dssp ET-----TTTEEEEECTTTCBE
T ss_pred EC-----CCCeEEEEECCCCCE
Confidence 32 234899999999753
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=97.64 E-value=2.3e-05 Score=70.87 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=67.2
Q ss_pred eeecceEEEEcccccccccceeEEeeecccchhhhheeecccc--------------------------eecCHhhHHHH
Q psy17309 227 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERK--------------------------LHITEDNVASL 280 (824)
Q Consensus 227 ~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~--------------------------l~l~~~~v~~l 280 (824)
+..+.++..|-...+ .+.|.++++++.+++.+++|+|... +.++.+++.+|
T Consensus 21 A~~S~~ik~ml~~~~---~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eL 97 (141)
T 1fs1_B 21 AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFEL 97 (141)
T ss_dssp GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHH
T ss_pred HHHhHHHHHHHHhcC---CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHH
Confidence 444555555511111 4579999999999999999998866 77889999999
Q ss_pred HHHHhhcChHhHHHHHHHHHhhcCCcchHHHH
Q psy17309 281 LLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312 (824)
Q Consensus 281 l~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i 312 (824)
+.||++|+|..|.+.|++++...+...+.-+|
T Consensus 98 i~AAnyL~I~~Lldl~c~~vA~~ikgkt~eei 129 (141)
T 1fs1_B 98 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 129 (141)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999998887776554
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.6e-05 Score=73.58 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=50.9
Q ss_pred eeecceEEEEcccccccccceeEEeeecccchhhhheeecccc---------------------------eecCHhhHHH
Q psy17309 227 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERK---------------------------LHITEDNVAS 279 (824)
Q Consensus 227 ~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~---------------------------l~l~~~~v~~ 279 (824)
+..+.+|..|-...+ ..+.|.++++++.+++.+++|+|... +.++.+++.+
T Consensus 23 A~~S~~ik~ml~~~~--~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~e 100 (160)
T 2p1m_A 23 ALESQTIAHMVEDDC--VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFE 100 (160)
T ss_dssp HHTCTTTC--------------CCTTSCHHHHHHHHHC------------------------------------------
T ss_pred HHHhHHHHHHHHccC--CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHH
Confidence 456666666621111 24579999999999999999999876 4688899999
Q ss_pred HHHHHhhcChHhHHHHHHHHHhhcC---CcchHHHHHHHH
Q psy17309 280 LLLATDFFCMSKAQDLCCDFIKRLT---TPRNCFGILLFS 316 (824)
Q Consensus 280 ll~~a~~~~i~~l~~~c~~~l~~~l---~~~N~~~i~~~a 316 (824)
|+.||++|+|..|++.|++++...+ +++.+..+|.++
T Consensus 101 Li~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 101 LILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 9999999999999999999999999 455554444443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.011 Score=58.89 Aligned_cols=151 Identities=11% Similarity=-0.007 Sum_probs=102.5
Q ss_pred eEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 502 HGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 502 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
.++...++.||+..|..+ .+..+|+.+++-..-- ++..-.+.+++..+++||+.... .+.+++||+.+.
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl 126 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcC
Confidence 566777999999998653 3899999998754333 55444556688889999998653 378999999887
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC--CCCCCCcc-eEEEEECCEEEEEec
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE--PMRHRRSG-VSCIAYHECIYVIGG 657 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~~p~~r~~-~~~~~~~~~iyv~GG 657 (824)
+-. ..++.+-.+.+++.-+++||+.-| .+.+..+||++.+-.. +. .-+.+... -.....+|+||+---
T Consensus 127 ~~~--~ti~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw 198 (268)
T 3nok_A 127 QRE--RTTRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIW 198 (268)
T ss_dssp EEE--EEEECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred cEE--EEEeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC
Confidence 643 223333445677777889999865 3679999999876432 21 11222111 123455899996432
Q ss_pred CCCCCccceEEEEeCCCCC
Q psy17309 658 FNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~ 676 (824)
. .+.|.+.|+++.+
T Consensus 199 ~-----s~~I~vIDp~TG~ 212 (268)
T 3nok_A 199 H-----SSDVLEIDPATGT 212 (268)
T ss_dssp T-----CSEEEEECTTTCB
T ss_pred C-----CCeEEEEeCCCCc
Confidence 2 4689999999875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.035 Score=55.76 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=118.4
Q ss_pred eEEEEEC-CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 502 HGTAVIG-YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 502 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
+++++.+ +.||+..|..+ .+.+..+|+.+++-...-+++......+++..+++||+..- ..+.+++||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~-----~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW-----LKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET-----TCSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe-----cCCEEEEEECCC
Confidence 5676665 89999887432 36799999999986654445444455677888999999864 246799999987
Q ss_pred CcEEeecCCCcc-cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC--CCCCCC-cceEEEEECCEEEEE
Q psy17309 581 NQWSLIAPMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE--PMRHRR-SGVSCIAYHECIYVI 655 (824)
Q Consensus 581 ~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~~p~~r-~~~~~~~~~~~iyv~ 655 (824)
.+= +..+|.+ -.+.+++.-++++|+.-| .+.+..+|+++.+-.. +. ..+.+. .-..+...+++||+-
T Consensus 96 ~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 96 LSN--IKNFTHQMKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp TEE--EEEEECCSSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CcE--EEEEECCCCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 653 2223222 234445544678998754 3689999999865322 22 111121 112334448899976
Q ss_pred ecCCCCCccceEEEEeCCCCC---EEECCCC---------CCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKT---WSQVPDM---------YNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~---W~~~~~~---------p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
-.. .+.|.+.|+.+.+ |-.++.+ +..-.-.+++.- ++++||.|+... .+++.+..
T Consensus 168 ~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~-----~v~~i~l~ 236 (266)
T 2iwa_A 168 IWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP-----KLFEIKLH 236 (266)
T ss_dssp ETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS-----EEEEEEEE
T ss_pred cCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC-----eEEEEEEe
Confidence 542 4689999998875 3333211 000112344443 468999987543 45555543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0056 Score=60.87 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=104.7
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
.++...++.||+..|..+. +.+.++|+.+.+=..--+++..-.+.+++..+++||+.... .+.+.+||+++.
T Consensus 46 qGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTC
T ss_pred ceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECccC
Confidence 4566668999999986542 57899999999866555666555667788889999998653 368999999887
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-CC--CCCCCCcce-EEEEECCEEEEEcc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-VP--DMYNPRSNF-AIEVIDDMIFAIGG 704 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~~p~~r~~~-~~~~~~~~i~v~GG 704 (824)
+-. ..++.+..+.+.+.-+++||+.-| .+.++.+|+++.+-.. +. .-+.+.... .+...+++||+--
T Consensus 118 ~~~--~ti~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~- 188 (262)
T 3nol_A 118 RQV--RSFNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV- 188 (262)
T ss_dssp CEE--EEEECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEE--EEEECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE-
Confidence 643 233333455666766788888766 3679999999865322 21 111111111 2444589999643
Q ss_pred CCCCceeeEEEEEECCCCcEE
Q psy17309 705 FNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~ 725 (824)
+ ..+.|.+.||++.+=.
T Consensus 189 w----~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 189 W----QTNKIVRIDPETGKVT 205 (262)
T ss_dssp T----TSSEEEEECTTTCBEE
T ss_pred c----cCCeEEEEECCCCcEE
Confidence 1 2348999999997643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0044 Score=66.53 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=120.1
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
.+++.|+. ...+..+|..+++-...-.. ...-.+++.. +..+|+.|+.+ ..+..||+.+++...
T Consensus 3 ~l~vs~~~-----d~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 3 FAYIANSE-----SDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIA 68 (391)
T ss_dssp EEEEEETT-----TTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEE
T ss_pred EEEEEcCC-----CCEEEEEECCCCeEEEEeec----CCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEE
Confidence 45666543 35688999988765442111 1112334443 44677777543 578999998887544
Q ss_pred eccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-C-CEEEEEcccCCC
Q psy17309 539 IAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-Q-GKIYITGGFNGH 614 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~ 614 (824)
.-..+. .-.+++.. +..||+.|.. ...+.+||+.+++....-.. .....+++.. + ..+|+.++.+
T Consensus 69 ~~~~~~--~v~~~~~spdg~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~-- 137 (391)
T 1l0q_A 69 TVPAGS--SPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD-- 137 (391)
T ss_dssp EEECSS--SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT--
T ss_pred EEECCC--CccceEECCCCCEEEEEECC-----CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC--
Confidence 333222 22333333 3456666542 25799999998875433222 2222333333 3 4677776543
Q ss_pred CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-C-CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 615 NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-H-ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 615 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
..+..||+.+.+....-.. ......++.. + ..||+.++.+ ..+.+||+.+.+-...-.. .....++
T Consensus 138 ---~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~--~~~~~~~ 205 (391)
T 1l0q_A 138 ---KTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV--EAAPSGI 205 (391)
T ss_dssp ---TEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC--SSEEEEE
T ss_pred ---CEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec--CCCccce
Confidence 4789999988876543222 1222223333 3 4577776543 5689999987754433211 1111222
Q ss_pred EEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 693 EVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 693 ~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+.. +++.+++++.+. ....+.+||+.+.+-
T Consensus 206 ~~~~~g~~l~~~~~~~--~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDK--YFNTVSMIDTGTNKI 236 (391)
T ss_dssp EECTTSSEEEEEEECS--SCCEEEEEETTTTEE
T ss_pred EECCCCCEEEEEecCc--CCCcEEEEECCCCeE
Confidence 222 444444443211 123688999887653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.24 E-value=0.029 Score=59.27 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=123.9
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.++++|+. ...+..||..+.++..+..... ....-.+++.. ++..++.|+.+ ..+..||..++++..
T Consensus 20 ~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 20 RTQIAICPN-----NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKP 88 (372)
T ss_dssp SSEEEEECS-----SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEE
T ss_pred CCEEEEEeC-----CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeee
Confidence 445666653 3568889988887544321111 12222334444 56677777754 358889998888765
Q ss_pred eccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCc-EEeecCCCcc--cCceEEEEE-CCEEEEEcccC
Q psy17309 539 IAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ-WSLIAPMNVE--RSDASATTL-QGKIYITGGFN 612 (824)
Q Consensus 539 ~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~--r~~~~~~~~-~~~lyv~GG~~ 612 (824)
...+...... .+++.. ++..++.|+.+ ..+..||..+.. |........+ ..-.+++.. ++..++.|+.+
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 5433222222 223332 56677777743 346666666543 4333222111 112222222 56677777755
Q ss_pred CCCcCCceEEEeCCCC----------------eEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC
Q psy17309 613 GHNCLNSCEVYDPECN----------------QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~----------------~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
..+..||.... .-..+..+.........+.+ ++..++.|+.+ ..+.+||..+
T Consensus 164 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~ 233 (372)
T 1k8k_C 164 -----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADK 233 (372)
T ss_dssp -----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGG
T ss_pred -----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCC
Confidence 36778885311 11111122222222233333 56677777653 4688899876
Q ss_pred CCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCC--CcEEeccCCCCC
Q psy17309 675 KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT--DEWYEATDMNIY 733 (824)
Q Consensus 675 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~ 733 (824)
.+-...-..........+..-++++++.| .++ .+.+||..+ ++|..+..+..+
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-----~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAG-HDC-----FPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS-----SCEEEEEETTTTEEEECCCCCCC
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEE-eCC-----eEEEEEccCcCceEEEeeccCcc
Confidence 65322211111111111222377777666 433 456777777 999988666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.023 Score=60.09 Aligned_cols=241 Identities=11% Similarity=0.148 Sum_probs=126.4
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-C--CEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-G--YNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
+..++.|+.+ ..+..||.....+..+..... ....-.+++.. + +.+++.|+.+ ..+..||..+++|
T Consensus 23 ~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 91 (379)
T 3jrp_A 23 GKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRW 91 (379)
T ss_dssp SSEEEEEETT-----SCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCEEEEEECC-----CcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCce
Confidence 3455666532 347778877655554321111 11222333332 2 5677777754 3588899999988
Q ss_pred EEeccCCCCcceEEEEEE--C--CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccC-ceEEEEE----------
Q psy17309 537 KEIAPMNFKRCYVSTAVH--Q--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERS-DASATTL---------- 601 (824)
Q Consensus 537 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~-~~~~~~~---------- 601 (824)
..+..+.........+.+ + +.+++.|+.+ ..+.+||..+..-.....+..... -.+++..
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 766655433222333333 3 5677777743 468888887763211111111111 1122222
Q ss_pred ----CCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCCCCCCcceEEEEE--C---CEEEEEecCCCCCccceEEEE
Q psy17309 602 ----QGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPMRHRRSGVSCIAY--H---ECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 602 ----~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~v~~y 670 (824)
++.+++.|+.++ .+..||..+. .|.....+........++.+ + +.+++.|+.+ ..+.+|
T Consensus 167 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----g~i~iw 236 (379)
T 3jrp_A 167 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIW 236 (379)
T ss_dssp ---CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEE
T ss_pred cCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC-----CEEEEE
Confidence 367778887653 5778887544 35555444333333333333 3 6788888764 357788
Q ss_pred eCCCCC----EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECC-CCcEEeccCCCC
Q psy17309 671 NPVTKT----WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK-TDEWYEATDMNI 732 (824)
Q Consensus 671 d~~~~~----W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~ 732 (824)
|..+.. ........... ....+.+ +++.+++|+.++ .+.+||.. ...|..+..+..
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSS-----SEEEEEEEETTEEEEEEEEC-
T ss_pred eCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCCccccccceec
Confidence 877653 12222211111 1222222 677778877654 46667765 467887755433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.26 Score=49.89 Aligned_cols=218 Identities=7% Similarity=-0.037 Sum_probs=118.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||+. .++..+.... ....-++++.. ++.+|+.... ...+++||+. ++...+........-++++.
T Consensus 36 ~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 106 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-GIIKEYTLPNPDSAPYGITE 106 (299)
T ss_dssp TEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred CcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-CcEEEEeCCCcCCCceeeEE
Confidence 468889988 7766543221 11223344443 6678877532 2458899986 55554432112223334444
Q ss_pred E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 554 H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
. ++.+|+.... ...+.++|+ +.+..............+++.- ++++|+.... ...+.+||+ +++..
T Consensus 107 ~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 107 GPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-----NNAIGRITE-SGDIT 174 (299)
T ss_dssp CTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEE
T ss_pred CCCCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-----CCEEEEEcC-CCcEE
Confidence 4 5788887532 257899999 6665544221112222333333 5788886421 246889999 77766
Q ss_pred EcCCCCCCCcce-EEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 632 LIEPMRHRRSGV-SCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 632 ~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
... .+...... +.+.. ++.||+.... ...+.+||+ +.+..... ++..........+ +++||+....+
T Consensus 175 ~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~- 245 (299)
T 2z2n_A 175 EFK-IPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTEWGA- 245 (299)
T ss_dssp EEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTT-
T ss_pred Eee-CCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEeccCC-
Confidence 542 12112222 33333 5789887642 257899999 77766542 2212222223333 57888875222
Q ss_pred CceeeEEEEEECCCCcEEec
Q psy17309 708 VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~ 727 (824)
+.+.+||+ +.+...+
T Consensus 246 ----~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 246 ----NKIGRLTS-NNIIEEY 260 (299)
T ss_dssp ----TEEEEEET-TTEEEEE
T ss_pred ----ceEEEECC-CCceEEE
Confidence 26889998 4454443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.042 Score=55.17 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=99.4
Q ss_pred EEEEEEC-CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 549 VSTAVHQ-DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 549 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
++++..+ +.+|+..|..+ .+.+.++|+.+++=..--+++....+.+++..+++||+..-. .+.+.+||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCC
Confidence 5666665 89999877422 368999999999865544455544556777789999998543 36799999987
Q ss_pred CeEEEcCCCCCC-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEE-ECC--CCCCCC-cceEEEEECCEEEEE
Q psy17309 628 NQWTLIEPMRHR-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS-QVP--DMYNPR-SNFAIEVIDDMIFAI 702 (824)
Q Consensus 628 ~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~--~~p~~r-~~~~~~~~~~~i~v~ 702 (824)
.+= +..+|.+ ..+.+.+.-++++|+.-| .+.+..+|+++.+=. .++ ..+.+. .-..+...+++||+-
T Consensus 96 ~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 96 LSN--IKNFTHQMKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp TEE--EEEEECCSSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CcE--EEEEECCCCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 653 2222222 334455555678998765 368999999886532 221 111121 112333448899876
Q ss_pred ccCCCCceeeEEEEEECCCCc
Q psy17309 703 GGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~ 723 (824)
-.. .++|.+.|+++.+
T Consensus 168 ~~~-----~~~V~vID~~tg~ 183 (266)
T 2iwa_A 168 IWQ-----TDCIARISAKDGT 183 (266)
T ss_dssp ETT-----SSEEEEEETTTCC
T ss_pred cCC-----CCeEEEEECCCCc
Confidence 432 3489999999874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0086 Score=64.20 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=102.7
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
+.+|+.|+.+ ..+..||..+++-...-... ..-.+++.. ++ .||+.|+.+ ..+.++|+.+.+....
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~ 69 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIAT 69 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEE
Confidence 3567777643 56899999887654322222 122333333 34 577777643 5789999988875443
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecCCCCC
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HE-CIYVIGGFNGMS 662 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~ 662 (824)
-..+. .-.+++.. +..||+.|..+ ..+.+||+.+++....-.. .....+++.. ++ .+|+.++.+
T Consensus 70 ~~~~~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~--- 137 (391)
T 1l0q_A 70 VPAGS--SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD--- 137 (391)
T ss_dssp EECSS--SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT---
T ss_pred EECCC--CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC---
Confidence 22222 22233333 34566665432 5689999998875443222 2222233333 34 577777643
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
..+.+||+.+.+....-.. ......++.. +..||+.++.++ .+.+||+.+.+-.
T Consensus 138 --~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~-----~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 138 --KTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSM-----SISVIDTVTNSVI 193 (391)
T ss_dssp --TEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTT-----EEEEEETTTTEEE
T ss_pred --CEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCCC-----EEEEEECCCCeEE
Confidence 5789999988765443221 1111222222 346777765543 5888898877544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.12 Score=53.91 Aligned_cols=219 Identities=8% Similarity=-0.020 Sum_probs=118.5
Q ss_pred CceEEEEECCCCcEEEc-ccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC-----
Q psy17309 474 TDFVETYDTRADRWVKI-DQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK----- 545 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~-~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----- 545 (824)
...+..+|+.+.+.... +... ..++++.. ++.+|+.++.+ ..++.+|+.+++-...-+.+..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----CCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCCeEEEEEecCC-----CcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccc
Confidence 45799999988765432 1111 12233444 45688776532 4799999998875332222111
Q ss_pred ---cceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCC
Q psy17309 546 ---RCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLN 618 (824)
Q Consensus 546 ---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 618 (824)
..-..++.. ++.+|+.+... ...++++|+.+.+-...-+. .......++.. ++.+|+... ..
T Consensus 138 ~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~------~~ 206 (353)
T 3vgz_A 138 VRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSEGKRLYTTNA------DG 206 (353)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECC-CCTTCCCCEEETTTTEEEEECT------TS
T ss_pred cCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecC-CCCccceEEECCCCCEEEEEcC------CC
Confidence 112334443 45677776321 25699999988764332221 11112233333 456777643 24
Q ss_pred ceEEEeCCCCeEEEcCCCCC--CCcce-EEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEE
Q psy17309 619 SCEVYDPECNQWTLIEPMRH--RRSGV-SCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIE 693 (824)
Q Consensus 619 ~v~~yd~~~~~W~~~~~~p~--~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 693 (824)
.+..||+.+.+-...-+.+. +.... +++.. ++.+|+.... .+.+.+||+.+.+....-..+.+ .+++
T Consensus 207 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~---~~~~ 278 (353)
T 3vgz_A 207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAAPES---LAVL 278 (353)
T ss_dssp EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEECSSC---CCEE
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEcCCC---ceEE
Confidence 68899998876433222211 12222 23333 4557776542 36799999988775443333333 1222
Q ss_pred EE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 694 VI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 694 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.. ++.+|+.+..++ .+.+||+.+.+...
T Consensus 279 ~s~dg~~l~v~~~~~~-----~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAG-----KVSVIDAKSYKVVK 308 (353)
T ss_dssp EETTTTEEEEEETTTT-----EEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEECCCC-----eEEEEECCCCeEEE
Confidence 22 445777764432 68999998876544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.03 E-value=0.14 Score=52.58 Aligned_cols=227 Identities=11% Similarity=0.135 Sum_probs=118.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..++.|+.+ ..+..||..+.+....-.. ....-.+++.. ++.+++.|+.+ ..+..||..+++-..
T Consensus 35 ~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 35 GEWLASSSAD-----KLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLK 101 (312)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEE
T ss_pred CCEEEEeeCC-----CeEEEEeCCCcccchhhcc---CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEE
Confidence 3445555532 3577888877766542111 11112233333 56677777754 468889988775332
Q ss_pred eccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCC
Q psy17309 539 IAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHN 615 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~ 615 (824)
.-...... -.+++. -++.+++.|+.+ ..+..||+.+.+-.. .++..........+ ++.+++.|+.+
T Consensus 102 ~~~~~~~~-v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 170 (312)
T 4ery_A 102 TLKGHSNY-VFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD--- 170 (312)
T ss_dssp EEECCSSC-EEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEcCCCCC-EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEE--EecCCCCcEEEEEEcCCCCEEEEEeCC---
Confidence 11111111 112222 256677777754 458889988765322 12221222222223 56777777765
Q ss_pred cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEEC-CCCCCCCcc-eE
Q psy17309 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSN-FA 691 (824)
Q Consensus 616 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~-~~ 691 (824)
..+..||..+.+-...-.... ......+.+ +++.++.|+.+ ..+..||..+.+-... ......... ..
T Consensus 171 --~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 171 --GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp --SCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred --CcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence 368889988765432211111 111222223 56777777654 4688899877653222 111111111 11
Q ss_pred E-EEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 692 I-EVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 692 ~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
. ..-++.+++.|+.++ .+.+||..+.+
T Consensus 243 ~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~ 270 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDN-----LVYIWNLQTKE 270 (312)
T ss_dssp EEECSSSCEEEECCTTS-----CEEEEETTTCC
T ss_pred EEEeCCCcEEEEECCCC-----EEEEEECCCch
Confidence 2 223677888888765 58889988764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.14 Score=55.86 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=116.7
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEEC
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 555 (824)
.+..||..+.+-... ... ....-.++.. ++..++.|+.+ ..+..||..+++-...-. ........+..+
T Consensus 180 ~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~-~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~ 248 (445)
T 2ovr_B 180 TLKVWNAETGECIHT--LYG-HTSTVRCMHL-HEKRVVSGSRD-----ATLRVWDIETGQCLHVLM--GHVAAVRCVQYD 248 (445)
T ss_dssp CEEEEETTTTEEEEE--ECC-CSSCEEEEEE-ETTEEEEEETT-----SEEEEEESSSCCEEEEEE--CCSSCEEEEEEC
T ss_pred eEEEEECCcCcEEEE--ECC-CCCcEEEEEe-cCCEEEEEeCC-----CEEEEEECCCCcEEEEEc--CCcccEEEEEEC
Confidence 466777766654321 110 1111122222 34445566543 468888888765322111 111222233347
Q ss_pred CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC
Q psy17309 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 635 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 635 (824)
+..++.|+.+ ..+..||+.+.+-. ..+............++..++.|+.+ ..+..||..+.+-...
T Consensus 249 ~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~-- 314 (445)
T 2ovr_B 249 GRRVVSGAYD-----FMVKVWDPETETCL--HTLQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDVETGNCIHT-- 314 (445)
T ss_dssp SSCEEEEETT-----SCEEEEEGGGTEEE--EEECCCSSCEEEEEECSSEEEEEETT-----SCEEEEETTTCCEEEE--
T ss_pred CCEEEEEcCC-----CEEEEEECCCCcEe--EEecCCCCceEEEEECCCEEEEEeCC-----CeEEEEECCCCCEEEE--
Confidence 7777777754 45788888776532 22222222233344477777777765 4688999887653221
Q ss_pred CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEEC-CCCCCCCcceEEEEECCEEEEEccCCCCceeeEE
Q psy17309 636 MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHV 714 (824)
Q Consensus 636 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 714 (824)
+........+...++..++.|+.+ ..+..||..+.+-... ...........++.+++..++.|+.++ .+
T Consensus 315 ~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~v 384 (445)
T 2ovr_B 315 LTGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG-----TV 384 (445)
T ss_dssp ECCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS-----EE
T ss_pred EcCCcccEEEEEEeCCEEEEEeCC-----CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCC-----eE
Confidence 222222333444566677777754 4688999877653222 211112223344556788888888765 68
Q ss_pred EEEECCCCcEE
Q psy17309 715 ECYDEKTDEWY 725 (824)
Q Consensus 715 ~~yd~~~~~W~ 725 (824)
.+||..+.+..
T Consensus 385 ~iwd~~~~~~~ 395 (445)
T 2ovr_B 385 KLWDLKTGEFI 395 (445)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 89999887654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.05 Score=57.50 Aligned_cols=190 Identities=14% Similarity=0.083 Sum_probs=106.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--C--CEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--Q--DVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
++..++.|+.+ ..+..||....++..+..+.........+.. + +.+++.|+.+ ..+.+||..+.+|
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 91 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRW 91 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCce
Confidence 45566677654 3578888877777665554433222223333 2 6777777754 4588999999988
Q ss_pred EeecCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcce-EEEEE----------
Q psy17309 584 SLIAPMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGV-SCIAY---------- 648 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~---------- 648 (824)
..+..+.........+.+ + +.+++.|+.+ ..+..||..+..-.....+....... +++..
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 776555433333333333 3 5677777755 36778888765311110111111111 22222
Q ss_pred ----CCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCCCCcceEEEEE--C---CEEEEEccCCCCceeeEEEEE
Q psy17309 649 ----HECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYNPRSNFAIEVI--D---DMIFAIGGFNGVTTIYHVECY 717 (824)
Q Consensus 649 ----~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~i~v~GG~~~~~~~~~v~~y 717 (824)
++.+++.|+.+ ..+.+||..+. .|..+..+.........+.+ + +++++.|+.++ .+.+|
T Consensus 167 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iw 236 (379)
T 3jrp_A 167 NGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIW 236 (379)
T ss_dssp ---CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEE
T ss_pred cCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEE
Confidence 46778888764 35777877544 35444333322222333333 4 78899988765 47778
Q ss_pred ECCCC
Q psy17309 718 DEKTD 722 (824)
Q Consensus 718 d~~~~ 722 (824)
|..+.
T Consensus 237 d~~~~ 241 (379)
T 3jrp_A 237 TQDNE 241 (379)
T ss_dssp EESST
T ss_pred eCCCC
Confidence 87765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.13 Score=56.07 Aligned_cols=213 Identities=13% Similarity=0.187 Sum_probs=117.9
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 554 (824)
..+..||..+.+-... ... ....-.++.. .+.+++.|+.+ ..+..||..+++-... +............
T Consensus 139 g~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~-~~~~l~s~~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRT--LVG-HTGGVWSSQM-RDNIIISGSTD-----RTLKVWNAETGECIHT--LYGHTSTVRCMHL 207 (445)
T ss_dssp SCEEEEETTTCCEEEE--CCC-CSSCEEEEEE-ETTEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CcEEEEECCCCcEEEE--EcC-CCCCEEEEEe-cCCEEEEEeCC-----CeEEEEECCcCcEEEE--ECCCCCcEEEEEe
Confidence 4688899887764431 111 1112223333 35566677654 4588999988753321 2111122223333
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE 634 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 634 (824)
++..++.|+.+ ..+..||..+.+-... +........++..++..++.|+.+ ..+..||+.+.+-..
T Consensus 208 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~-- 273 (445)
T 2ovr_B 208 HEKRVVSGSRD-----ATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLH-- 273 (445)
T ss_dssp ETTEEEEEETT-----SEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEE--
T ss_pred cCCEEEEEeCC-----CEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEEEcCC-----CEEEEEECCCCcEeE--
Confidence 45556666643 5688899887653221 111222233444477778888765 468889987765322
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEE
Q psy17309 635 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHV 714 (824)
Q Consensus 635 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 714 (824)
.+........++..++..++.|+.+ ..+..||..+.+-... +........+...++..++.|+.++ .+
T Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i 341 (445)
T 2ovr_B 274 TLQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNADS-----TV 341 (445)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEETTS-----CE
T ss_pred EecCCCCceEEEEECCCEEEEEeCC-----CeEEEEECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeCCC-----eE
Confidence 2222223334455588878888764 4688999877653221 1112222334445666778887665 58
Q ss_pred EEEECCCCcE
Q psy17309 715 ECYDEKTDEW 724 (824)
Q Consensus 715 ~~yd~~~~~W 724 (824)
.+||..+.+-
T Consensus 342 ~vwd~~~~~~ 351 (445)
T 2ovr_B 342 KIWDIKTGQC 351 (445)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 8899877653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.021 Score=56.78 Aligned_cols=152 Identities=13% Similarity=-0.006 Sum_probs=101.5
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
.++...++.||+..|..+ .+.++|+.+.+=..-- ++..-.+.+++..+++||+.... .+.+.+||+++.
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl 126 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcC
Confidence 566777999999998643 3899999998753323 55555566678889999998653 367999999887
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-C--CCCCCCCcc-eEEEEECCEEEEEcc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-V--PDMYNPRSN-FAIEVIDDMIFAIGG 704 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~--~~~p~~r~~-~~~~~~~~~i~v~GG 704 (824)
+-. ..++.+..+.+.+.-+++||+.-| .+.+..+|+++.+-.. + ..-+.+... -.+...+++||+--
T Consensus 127 ~~~--~ti~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv- 197 (268)
T 3nok_A 127 QRE--RTTRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI- 197 (268)
T ss_dssp EEE--EEEECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEE--EEEeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE-
Confidence 643 223333445677777889999876 3689999999865332 2 111111111 12344589988642
Q ss_pred CCCCceeeEEEEEECCCCcE
Q psy17309 705 FNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W 724 (824)
+ ..+.|.+.||++.+=
T Consensus 198 w----~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 198 W----HSSDVLEIDPATGTV 213 (268)
T ss_dssp T----TCSEEEEECTTTCBE
T ss_pred C----CCCeEEEEeCCCCcE
Confidence 2 234899999999753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.4 Score=48.46 Aligned_cols=217 Identities=9% Similarity=-0.044 Sum_probs=118.4
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||+. .+...+..+. ....-++++.. ++.+|+.... ...+.+||+. +++...........-++++.
T Consensus 41 ~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITE 111 (300)
T ss_dssp TEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCCCCCCCccceE
Confidence 568889988 6666543221 11223344443 5678876531 2468999998 77765432212223334444
Q ss_pred E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-cCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-RSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
. ++.+|+.... ...+.+||+. .+..... ++.. ....+++.- +++||+.... ...+.+||+ +++.
T Consensus 112 ~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~ 178 (300)
T 2qc5_A 112 GLNGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-----NNSIGRITN-TGKL 178 (300)
T ss_dssp CSTTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCE
T ss_pred CCCCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-----CCeEEEECC-CCcE
Confidence 3 6788887532 2578999988 6655432 2211 222233332 5778886432 246889998 6666
Q ss_pred EEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCC
Q psy17309 631 TLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFN 706 (824)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 706 (824)
.... ++..........+ ++.||+.... ...+.+||+ +.++.... ++..........+ +++||+....+
T Consensus 179 ~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~ 250 (300)
T 2qc5_A 179 EEYP-LPTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWGA 250 (300)
T ss_dssp EEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred EEee-CCCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccCC
Confidence 6543 2222222333333 5789987642 246899998 55655542 1211222223333 57888875321
Q ss_pred CCceeeEEEEEECCCCcEEec
Q psy17309 707 GVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+.+.+||+ +.+....
T Consensus 251 -----~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 251 -----NQIGRITN-DNTIQEY 265 (300)
T ss_dssp -----TEEEEECT-TSCEEEE
T ss_pred -----CeEEEECC-CCcEEEE
Confidence 26888998 4555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.33 Score=49.08 Aligned_cols=212 Identities=8% Similarity=-0.035 Sum_probs=113.5
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||+. .+...+..+. ....-++++.. ++.+|+.... ...++++|+ +++............-.+++.
T Consensus 78 ~~i~~~~~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 78 NKIGRITKK-GIIKEYTLPN--PDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp TEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECCC-CcEEEEeCCC--cCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 357788876 4454432211 12233444444 5788886532 256889999 666655432211222334444
Q ss_pred E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccC-ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERS-DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
. ++.+|+... ....+++||+ +.+..... ++.... ..+++.- ++.||+.... .+.+.+||+ +++.
T Consensus 149 ~~~g~l~v~~~-----~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 149 GSDNALWFTEN-----QNNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEI 215 (299)
T ss_dssp CTTSCEEEEET-----TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCE
T ss_pred cCCCCEEEEeC-----CCCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcE
Confidence 3 578888653 1257899999 77776542 121112 2233332 5788886532 246889999 7776
Q ss_pred EEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC-CCcceEEEEECCEEEEEccCCC
Q psy17309 631 TLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN-PRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
.... ++........+.+ +|.||+.... .+.+.+||+. .+..... .+. ...-.+++.-++.||+... .
T Consensus 216 ~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~~-g~~~~~~-~~~~~~~~~~i~~~~g~l~v~~~-~- 285 (299)
T 2z2n_A 216 TEFK-IPTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLTSN-NIIEEYP-IQIKSAEPHGICFDGETIWFAME-C- 285 (299)
T ss_dssp EEEE-CSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEETT-TEEEEEE-CSSSSCCEEEEEECSSCEEEEET-T-
T ss_pred EEEE-CCCCCCCceeEEECCCCCEEEeccC-----CceEEEECCC-CceEEEe-CCCCCCccceEEecCCCEEEEec-C-
Confidence 6542 2222222333333 5788887532 2578899983 4444432 111 1122333335678888753 1
Q ss_pred CceeeEEEEEECCCC
Q psy17309 708 VTTIYHVECYDEKTD 722 (824)
Q Consensus 708 ~~~~~~v~~yd~~~~ 722 (824)
+.+.+||++++
T Consensus 286 ----~~l~~~~~~~~ 296 (299)
T 2z2n_A 286 ----DKIGKLTLIKD 296 (299)
T ss_dssp ----TEEEEEEEC--
T ss_pred ----CcEEEEEcCcc
Confidence 25788888765
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=96.86 E-value=7e-05 Score=62.79 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=48.1
Q ss_pred eeecceEEEE-c--ccccccccceeEEeeecccchhhhheeec-----c---ccee---cCHhhHHHHHHHHhhcCh
Q psy17309 227 AVHQDVIYAM-G--GYNGQRRQNSVEKYNYTENQDKIEEKKLF-----E---RKLH---ITEDNVASLLLATDFFCM 289 (824)
Q Consensus 227 ~~~~~~~~~~-~--g~~~e~~~~~i~l~~~~~~~~~~ll~~~Y-----t---~~l~---l~~~~v~~ll~~a~~~~i 289 (824)
+..+.+|..| . |.+.|+.+..|.++++++.+++.+++|+| + +++. ++.+++.+|+.||++|+.
T Consensus 21 A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 21 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 5667777777 2 35677788899999999999999999999 5 6777 999999999999999873
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.042 Score=59.95 Aligned_cols=215 Identities=11% Similarity=0.135 Sum_probs=107.5
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVSTAVH 554 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~ 554 (824)
.+..||..+.+-...-. ............+..++.|+.+ ..+..||..+..-.. ...+.........+..
T Consensus 194 ~i~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp CEEEEESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred eEEEEECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 46677776665432111 0111112222244466666644 357888887654221 1111111222223333
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE 634 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 634 (824)
++..++.|+.+ ..+.+||..+.+-.. .+........+...++.+++.|+.+ ..+..||..+.+-..
T Consensus 265 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~-- 330 (435)
T 1p22_A 265 DDKYIVSASGD-----RTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLR-- 330 (435)
T ss_dssp ETTEEEEEETT-----SEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEE--
T ss_pred CCCEEEEEeCC-----CeEEEEECCcCcEEE--EEcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCCEEE--
Confidence 66666666643 568899988765322 1222222233444466677777755 468899988765322
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC----------EEECCCCCCCCcceEEEEECCEEEEEcc
Q psy17309 635 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT----------WSQVPDMYNPRSNFAIEVIDDMIFAIGG 704 (824)
Q Consensus 635 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~----------W~~~~~~p~~r~~~~~~~~~~~i~v~GG 704 (824)
.+........++..++..++.|+.+ ..+.+||+.+.. -..+..- ......+..++..++.||
T Consensus 331 ~~~~h~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~l~s~s 402 (435)
T 1p22_A 331 VLEGHEELVRCIRFDNKRIVSGAYD-----GKIKVWDLVAALDPRAPAGTLCLRTLVEH---SGRVFRLQFDEFQIVSSS 402 (435)
T ss_dssp EECCCSSCEEEEECCSSEEEEEETT-----SCEEEEEHHHHTSTTSCTTTTEEEEECCC---SSCCCCEEECSSCEEECC
T ss_pred EEeCCcCcEEEEEecCCEEEEEeCC-----CcEEEEECCCCCCccccccchheeeccCC---CCCeEEEEeCCCEEEEEe
Confidence 1222223334455588888888864 457788864432 1111111 111122334888888888
Q ss_pred CCCCceeeEEEEEECCCCcEEe
Q psy17309 705 FNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.++ .+.+||..++.-..
T Consensus 403 ~Dg-----~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 403 HDD-----TILIWDFLNDPAAQ 419 (435)
T ss_dssp SSS-----EEEEEC--------
T ss_pred CCC-----EEEEEECCCCCCcc
Confidence 765 68888887765433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.033 Score=60.47 Aligned_cols=223 Identities=10% Similarity=-0.009 Sum_probs=117.3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC---CCcceEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---FKRCYVST 551 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~ 551 (824)
.++.+|+.+..+..+...+.+ ....+++.. ++.+++.++.+ ..+..||+.+++.....+.. .+......
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG--FQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS--SCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred EEEEECCCCCcceEEEEEcCC--CCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeE
Confidence 577788876655443221111 111122222 67888877643 35999999988776543321 11222222
Q ss_pred EEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 552 AVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
+.. ++.+++.|+.+ ..+.+||+.+.+....-. .....-.+++.. +..+|+.++.+ ..+..||+.+
T Consensus 175 ~~~~~~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~ 243 (433)
T 3bws_A 175 ISIPEHNELWVSQMQA-----NAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKT 243 (433)
T ss_dssp EEEGGGTEEEEEEGGG-----TEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTT
T ss_pred EEEcCCCEEEEEECCC-----CEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCC
Confidence 333 67888888743 578999998865432211 111122233333 45677776543 4689999988
Q ss_pred CeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCC---ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEE
Q psy17309 628 NQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMS---RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFA 701 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 701 (824)
.+....-+ ......+++.. +++.+++++..... .-..+.+||+.+.+-......+. ....++.. ++.+|+
T Consensus 244 ~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEE
T ss_pred CcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEE
Confidence 87544322 22222223332 45444444432111 13478899998765433211111 11122222 347888
Q ss_pred EccCCCCceeeEEEEEECCCCcEE
Q psy17309 702 IGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.++.++ .+.+||+.+.+-.
T Consensus 320 ~~~~~~-----~v~v~d~~~~~~~ 338 (433)
T 3bws_A 320 SDMCCS-----KIEVYDLKEKKVQ 338 (433)
T ss_dssp EETTTT-----EEEEEETTTTEEE
T ss_pred EecCCC-----EEEEEECCCCcEE
Confidence 876544 6889999876543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.096 Score=62.07 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=133.6
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCC-CcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF-KRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~ 553 (824)
.+..||+.+.++..+..........-.+++.. ++.|++ |.. ...+++||+.+++++....... ...-.+++.
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 457 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----LGNISYYNTRLKKFQIIELEKNELLDVRVFYE 457 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----TEEEEEECSSSCEEEECCSTTTCCCCEEEEEE
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE
Confidence 47889998877765421111111222334333 567776 322 1458999999999987764211 122223333
Q ss_pred E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCC---cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 554 H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN---VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
. ++.|++... .-+.+||+.+++|+.....+ ........... +|.|++.. .. .-+.+||+.+
T Consensus 458 d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-----~Gl~~~~~~~ 524 (781)
T 3v9f_A 458 DKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FG-----GGVGIYTPDM 524 (781)
T ss_dssp CTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SS-----SCEEEECTTC
T ss_pred CCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cC-----CCEEEEeCCC
Confidence 3 567777432 45899999999887664322 11111111222 57787742 11 3488999999
Q ss_pred CeEEEcCC---CCCCCcceEEEE-ECCEEEEEecCCCCCccceE-EEEeCCCCCEEECC---CCCCCCcceEEEEE-CCE
Q psy17309 628 NQWTLIEP---MRHRRSGVSCIA-YHECIYVIGGFNGMSRMCNG-EKYNPVTKTWSQVP---DMYNPRSNFAIEVI-DDM 698 (824)
Q Consensus 628 ~~W~~~~~---~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~ 698 (824)
++++.... +|.... .+.+. -+|.||+... ..+ .+||+++++++... .+|.... .+++.- +|.
T Consensus 525 ~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~ 595 (781)
T 3v9f_A 525 QLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGN 595 (781)
T ss_dssp CEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSC
T ss_pred CeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCC
Confidence 99887753 222211 12222 2578887643 245 88999988877653 2443332 233332 678
Q ss_pred EEEEccCCCCceeeEEEEEECCCCcEEecc---CCCCCccceeEEEE--cCcccee
Q psy17309 699 IFAIGGFNGVTTIYHVECYDEKTDEWYEAT---DMNIYRSALSACVI--MGLPNVY 749 (824)
Q Consensus 699 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~--~~~~~~~ 749 (824)
|++.+. + -+.+|||++.++.... .++...+...++.. ++.+++.
T Consensus 596 lW~~t~-~------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g 644 (781)
T 3v9f_A 596 IWASTN-T------GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFG 644 (781)
T ss_dssp EEEECS-S------CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEEcC-C------ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEE
Confidence 888752 1 3788999999887762 35555443333333 3555543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.043 Score=59.82 Aligned_cols=212 Identities=10% Similarity=0.148 Sum_probs=117.2
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 554 (824)
..+..||..+.+-...-.. ......+...++.+++.|+.+ ..+..||..+++-... +............
T Consensus 153 g~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~ 221 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTG----HTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLNT--LIHHCEAVLHLRF 221 (435)
T ss_dssp SCEEEEESSSCCEEEEECC----CSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEEEE--ECCCCSCEEEEEC
T ss_pred CeEEEEeCCCCeEEEEEcC----CCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcCCCCcEEEEEE
Confidence 4688899887665432111 111222233377788888765 3588999988764322 2112222233334
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEe-ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEc
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL-IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLI 633 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 633 (824)
++..++.|+.+ ..+..||..+..-.. ...+........+...++..++.|+.+ ..+..||..+.+-..
T Consensus 222 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~- 290 (435)
T 1p22_A 222 NNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-----RTIKVWNTSTCEFVR- 290 (435)
T ss_dssp CTTEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTTCCEEE-
T ss_pred cCCEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCcCcEEE-
Confidence 55667777754 458888887654211 111112222233334466666777654 468889988765322
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeE
Q psy17309 634 EPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYH 713 (824)
Q Consensus 634 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 713 (824)
.+........++..++..++.|+.+ ..+..||..+.+-... +........++.+++..++.|+.++ .
T Consensus 291 -~~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~sg~~dg-----~ 357 (435)
T 1p22_A 291 -TLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDG-----K 357 (435)
T ss_dssp -EEECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS-----C
T ss_pred -EEcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCCEEEE--EeCCcCcEEEEEecCCEEEEEeCCC-----c
Confidence 1222223334455577778888754 4688999887643221 1112222334455888888988765 5
Q ss_pred EEEEECCC
Q psy17309 714 VECYDEKT 721 (824)
Q Consensus 714 v~~yd~~~ 721 (824)
+.+||..+
T Consensus 358 i~vwd~~~ 365 (435)
T 1p22_A 358 IKVWDLVA 365 (435)
T ss_dssp EEEEEHHH
T ss_pred EEEEECCC
Confidence 77888654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.54 Score=47.35 Aligned_cols=219 Identities=11% Similarity=0.059 Sum_probs=115.0
Q ss_pred ceEEEEECCCCcEEEcccCCC--CCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDP--MGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~--~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 550 (824)
..+..||+.......+..... .....-.++++. ++.+|+.+.. ....+.+||+....-..+..... ..-.+
T Consensus 51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~~~-~~~~~ 125 (286)
T 1q7f_A 51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGATIL-QHPRG 125 (286)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECTTTC-SCEEE
T ss_pred CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecCccC-CCceE
Confidence 468889887554444322111 111233455553 6889988732 12568899965544444432111 12233
Q ss_pred EEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 551 TAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
++.. ++.+|+.... ...+.+||+.......+........-.+++.- ++++|+.+.. ...+.+||+...
T Consensus 126 i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~ 195 (286)
T 1q7f_A 126 VTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQ 195 (286)
T ss_dssp EEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCC
T ss_pred EEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCC
Confidence 4433 6788887542 25789999876654444221111112233332 5889987543 257899998766
Q ss_pred eEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEEEE-ECCEEEEEcc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAIEV-IDDMIFAIGG 704 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~i~v~GG 704 (824)
....+..-. .......+.+ +|.||+....++ ..+.+||+....-..+.. .+.. ...+++. -++++|+..
T Consensus 196 ~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~~~~~-~~~~i~~~~~g~l~vs~- 268 (286)
T 1q7f_A 196 YLRQIGGEG-ITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESKVKHA-QCFDVALMDDGSVVLAS- 268 (286)
T ss_dssp EEEEESCTT-TSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESSCCS-CEEEEEEETTTEEEEEE-
T ss_pred EEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEcccCCCC-cceeEEECCCCcEEEEC-
Confidence 544443211 1122233333 678999875321 278999986554333321 1111 1123333 278999884
Q ss_pred CCCCceeeEEEEEECC
Q psy17309 705 FNGVTTIYHVECYDEK 720 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~ 720 (824)
.+ +.+.+|+..
T Consensus 269 ~~-----~~v~v~~~~ 279 (286)
T 1q7f_A 269 KD-----YRLYIYRYV 279 (286)
T ss_dssp TT-----TEEEEEECS
T ss_pred CC-----CeEEEEEcc
Confidence 22 256777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.15 Score=51.06 Aligned_cols=212 Identities=15% Similarity=0.045 Sum_probs=112.2
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||+.+.....+...... .-.+++.. ++.+|+... ...+++||+.+.....+..... ..-.+++.
T Consensus 46 ~~i~~~~~~~~~~~~~~~~~~~---~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~ 115 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLPFNGLY---QPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAV 115 (270)
T ss_dssp CEEEEECC-----EECCCCSCC---SCCCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCCSC-SSEEEEEE
T ss_pred CcEEEecCCCcccceEeeCCcC---CcceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecCCc-CCCcceEE
Confidence 4688888877665543222211 22334444 567888764 2468999998876554432111 12234444
Q ss_pred E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 554 H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
. ++.+|+.... ...+.+++..+.......... ...-.+++.- ++++|+.... ...+.+||+.+..-.
T Consensus 116 ~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 116 DTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQV 184 (270)
T ss_dssp CTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEE
T ss_pred CCCCCEEEEECC-----CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceE
Confidence 3 6789987542 256888887766544322111 1112233333 5789987543 246889998876644
Q ss_pred EcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 632 LIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
..... .......+.+ +|.||+.... .+.+.+||+....-..... ........+.+ +++||+....++
T Consensus 185 ~~~~~--~~~~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 185 VLPFT--DITAPWGIAVDEAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp ECCCS--SCCSEEEEEECTTCCEEEEETT-----TSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred eeccc--CCCCceEEEECCCCCEEEEECC-----CCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECCCC
Confidence 33211 1122233333 4689988643 2468999987654333221 11122233333 578888865432
Q ss_pred CceeeEEEEEECCC
Q psy17309 708 VTTIYHVECYDEKT 721 (824)
Q Consensus 708 ~~~~~~v~~yd~~~ 721 (824)
.|.+|+...
T Consensus 256 -----~v~~~~~~~ 264 (270)
T 1rwi_B 256 -----RVVKLTSLE 264 (270)
T ss_dssp -----EEEEECCCG
T ss_pred -----EEEEEcCCC
Confidence 678887654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.12 Score=53.67 Aligned_cols=184 Identities=12% Similarity=0.093 Sum_probs=99.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+++.|+.+ ..+..||..+++-.. +..-+. .. .+++. -++..++.|+.+ ..+..||..+..-..
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~-~~-~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDAGPV-DA-WTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEY 158 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTT-CC-CCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCCCc-cE-EEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeE
Confidence 45566677654 468889988875432 221111 11 12222 356777777643 567888887765322
Q ss_pred ecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 586 IAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
.-.. ....-.+++.. +++.++.|+.+ ..+..||..+.+-... +........++.+ ++++++.|+.+
T Consensus 159 ~~~~-~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d--- 227 (321)
T 3ow8_A 159 SLDT-RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD--- 227 (321)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT---
T ss_pred EecC-CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC---
Confidence 1111 11111122222 67777787765 4688999988754322 1111111122223 67788888754
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+.+||..+..-... +.........+.+ +++.++.|+.++ .+.+||..+.+
T Consensus 228 --g~i~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~~~~~ 281 (321)
T 3ow8_A 228 --GYIKIYDVQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDVGTRT 281 (321)
T ss_dssp --SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE
T ss_pred --CeEEEEECCCcceeEE--EcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCE
Confidence 4588899876654322 1111111222333 677888888765 57888987754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.18 Score=59.74 Aligned_cols=238 Identities=11% Similarity=0.120 Sum_probs=132.8
Q ss_pred eEEEEECCCCcEEEcccCC-C----CCCCceeEEEEE-CCE-EEEEeecCCCcccceEEEEECCCCceEEeccCCC--C-
Q psy17309 476 FVETYDTRADRWVKIDQVD-P----MGPRAYHGTAVI-GYN-IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF--K- 545 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~-~----~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~- 545 (824)
.+..||+.++++..+.... . .....-.+++.. ++. |++ |... ..+++||+.++++........ +
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHA-----GGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EETT-----TEEEEEETTTCCEEEECTTTSCCSC
T ss_pred CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCc-----CceeEEeCCCCcEEEeecCCCCcCC
Confidence 4788999998887754322 0 112233444444 556 665 3221 358999999998887653211 1
Q ss_pred cceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC--Ccc--cCceEEEEE--CCEEEEEcccCCCCcCC
Q psy17309 546 RCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM--NVE--RSDASATTL--QGKIYITGGFNGHNCLN 618 (824)
Q Consensus 546 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~ 618 (824)
..-.+++.. +|.|++... .-+.+||+.+++|+..... +.. ......... +|.|++... .
T Consensus 452 ~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~ 517 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------E 517 (795)
T ss_dssp SCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------S
T ss_pred CeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------C
Confidence 111222222 567777532 3489999999999877533 111 111112222 577887532 3
Q ss_pred ceEEEeCCCCeEEEcCCC---C-CCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC---CCCCCCcc
Q psy17309 619 SCEVYDPECNQWTLIEPM---R-HRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP---DMYNPRSN 689 (824)
Q Consensus 619 ~v~~yd~~~~~W~~~~~~---p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~ 689 (824)
-+.+||+.++++ ..... + .+-....+... +|.||+... ..+.+||+.+++++... .+|... .
T Consensus 518 Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i 588 (795)
T 4a2l_A 518 GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-V 588 (795)
T ss_dssp CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECGGGTCSCSC-E
T ss_pred ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCceeECCCCCcEEEeCCCCCCchhh-e
Confidence 488999998888 44311 1 01111122222 578887543 25889999999888764 244322 1
Q ss_pred eEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEecc---CCCCCccceeEEEE--cCcccee
Q psy17309 690 FAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT---DMNIYRSALSACVI--MGLPNVY 749 (824)
Q Consensus 690 ~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~--~~~~~~~ 749 (824)
.+++.- +|.|++.+. +-+.+|||++++++... .++...+...++.. ++.+++.
T Consensus 589 ~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g 647 (795)
T 4a2l_A 589 YGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFG 647 (795)
T ss_dssp EEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEe
Confidence 222222 578888753 24788999999988762 35554443333333 3455543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.63 Score=58.18 Aligned_cols=188 Identities=7% Similarity=0.075 Sum_probs=97.1
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++..+++|+.+ ..+..||..+++..................-++..++.||.+ ..+..||..+.......
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-----SVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-----SBEEEEETTTTEEECCB
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCceEEEe
Confidence 44555556543 347788887765433221111111112222356677777643 46889999888765443
Q ss_pred CCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceE
Q psy17309 588 PMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG 667 (824)
Q Consensus 588 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v 667 (824)
... ..-.+++...+..++.|+.+ ..+..||..+++-...-..........+..-+++.++.|+.+ ..+
T Consensus 1042 ~~~--~~v~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d-----~~v 1109 (1249)
T 3sfz_A 1042 AHQ--ETVKDFRLLQDSRLLSWSFD-----GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD-----KTA 1109 (1249)
T ss_dssp CCS--SCEEEEEECSSSEEEEEESS-----SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS-----SCC
T ss_pred cCC--CcEEEEEEcCCCcEEEEECC-----CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC-----CcE
Confidence 222 12222333333344556554 468889987765321111111112222223367777777754 356
Q ss_pred EEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 668 EKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 668 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.+||..+.+ .+..+........++.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 1110 ~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-----~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1110 KIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNG-----EIRIWNVSDGQL 1161 (1249)
T ss_dssp CEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-----CCCEEESSSSCC
T ss_pred EEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCce
Confidence 678876543 22222222222223333 788888888765 477888877543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.1 Score=52.30 Aligned_cols=193 Identities=13% Similarity=0.035 Sum_probs=100.8
Q ss_pred eEEEEE-CCEEEE-EeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeC
Q psy17309 502 HGTAVI-GYNIYV-IGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNY 578 (824)
Q Consensus 502 ~~~~~~-~~~lyv-~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 578 (824)
.+++.. ++.+|+ .... ...+.+||+.+........... ..-.+++.. ++.+|+... ...+.+||+
T Consensus 27 ~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~------~~~i~~~d~ 94 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF------NNRVVTLAA 94 (270)
T ss_dssp EEEEECTTCCEEEEECSS-----SCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET------TTEEEEECT
T ss_pred cceEECCCCCEEEEccCC-----CCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC------CCEEEEEeC
Confidence 344443 567888 4221 2568889987766554332211 112234443 568888764 257899999
Q ss_pred CCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q psy17309 579 TENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIG 656 (824)
Q Consensus 579 ~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 656 (824)
.+......... ......+++.- ++++|+.... ...+.+||..+........... ..-.+++.. +++||+..
T Consensus 95 ~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 95 GSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp TCSCCEECCCC-SCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEE
T ss_pred CCceEeeeecC-CcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEE
Confidence 88765443211 11122333333 6789987543 2468888877665443321111 111223333 57899876
Q ss_pred cCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.. ...+.+||+....-........ ..-.+++.- ++.||+....++ .+.+||+.+..-
T Consensus 168 ~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~-----~v~~~~~~~~~~ 225 (270)
T 1rwi_B 168 TD-----NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTN-----QVVKLLAGSTTS 225 (270)
T ss_dssp GG-----GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTS-----CEEEECTTCSCC
T ss_pred CC-----CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCC-----cEEEEcCCCCcc
Confidence 53 2578999998766544321111 112233332 568888764322 588899877543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.2 Score=51.83 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=116.0
Q ss_pred ceEEEEECC--CCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc-eEEeccCCCCcceE
Q psy17309 475 DFVETYDTR--ADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV-WKEIAPMNFKRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~--~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~ 549 (824)
..+..|+.. +.++..+.....+. .-..++.. +..+|+.+.. ...+..||...+. ...+...+....-+
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 132 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN-----AGNVSVTRLEDGLPVGVVDVVEGLDGCH 132 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT-----TTEEEEEEEETTEEEEEEEEECCCTTBC
T ss_pred CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC-----CCeEEEEECCCCccccccccccCCCCce
Confidence 467777765 66766542221111 22233333 3456665532 2457788874222 22222222222222
Q ss_pred EEEEE-C-CEEEEEecccCCCCCCeEEEEeCCC-CcEEeec----CCCcccCceEEEEE-CC-EEEEEcccCCCCcCCce
Q psy17309 550 STAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTE-NQWSLIA----PMNVERSDASATTL-QG-KIYITGGFNGHNCLNSC 620 (824)
Q Consensus 550 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~----~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~v 620 (824)
.++.. + ..+|+.+..+ ..+.+||..+ .+...+. ..+.......++.. ++ .+|+.+..+ ..+
T Consensus 133 ~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i 202 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSV 202 (343)
T ss_dssp CCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred EEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-----CEE
Confidence 33333 3 3677765322 5688999887 6665432 12211111122222 34 577765432 467
Q ss_pred EEEeCC--CCeEEE---cCCCCCC---CcceEEEEE--CC-EEEEEecCCCCCccceEEEEeCC--CCCEEECCCCCCCC
Q psy17309 621 EVYDPE--CNQWTL---IEPMRHR---RSGVSCIAY--HE-CIYVIGGFNGMSRMCNGEKYNPV--TKTWSQVPDMYNPR 687 (824)
Q Consensus 621 ~~yd~~--~~~W~~---~~~~p~~---r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r 687 (824)
..||.. +.++.. +..++.. ......+.+ ++ .||+.+.. ...+.+||+. +.+++.+..++...
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~ 277 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLSKEGFQPTET 277 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceEEeeeecCCC
Confidence 888874 444432 2333332 122222333 34 57666543 2467888877 55666664433322
Q ss_pred cceEEEEE-CC-EEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEE
Q psy17309 688 SNFAIEVI-DD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSAC 740 (824)
Q Consensus 688 ~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 740 (824)
.-.+++.. ++ .||+.++.++ .-.+|..|+++.+++.+..++....-.+++
T Consensus 278 ~~~~~~~s~dg~~l~~~~~~~~---~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 278 QPRGFNVDHSGKYLIAAGQKSH---HISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp SCCCEEECTTSSEEEEECTTTC---EEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred ccceEEECCCCCEEEEecCCCC---eEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 22222322 44 4666553332 123555588899998887666543333333
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.62 Score=46.90 Aligned_cols=194 Identities=10% Similarity=0.007 Sum_probs=104.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC----CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN----FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
++.+|+.+.. ...+.+||+.......++... ....-.+++.. ++.+|+.+... ...+.+||+...
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~~g~ 110 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQYGQ 110 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECTTSC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECCCCc
Confidence 5678877542 256889998855444443211 01123445553 67999986321 257899996555
Q ss_pred cEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecC
Q psy17309 582 QWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGF 658 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 658 (824)
.-..+... ......++++- ++++|+....+ ..+.+||+.......+.... .......+.+ +++||+....
T Consensus 111 ~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 111 FVRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp EEEEECTT-TCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTT-TCSSEEEEEECSSSEEEEEEGG
T ss_pred EEEEecCc-cCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCC-ccCCcEEEEECCCCCEEEEECC
Confidence 44434221 11112233332 67899875432 46889998766544443211 1112223333 5889988653
Q ss_pred CCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 659 NGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 659 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
...+.+||+.......+..-.. ......+++ +++||+....+. ..+.+||++...-..+
T Consensus 184 -----~~~i~~~~~~g~~~~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 184 -----AHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISAL 244 (286)
T ss_dssp -----GTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEE
T ss_pred -----CCEEEEEcCCCCEEEEEccCCc-cCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEE
Confidence 3578999987654444432110 112222333 678888864331 1688999776543333
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.52 Score=49.10 Aligned_cols=215 Identities=11% Similarity=0.124 Sum_probs=109.4
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCc-ceEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKR-CYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r-~~~~ 550 (824)
..+..||..+.+-... .+.. ...-.+++.. ++..++.||.+ ..+..||..+.. ......+.... .-.+
T Consensus 77 g~v~iWd~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~ 148 (340)
T 1got_B 77 GKLIIWDSYTTNKVHA--IPLR-SSWVMTCAYAPSGNYVACGGLD-----NICSIYNLKTREGNVRVSRELAGHTGYLSC 148 (340)
T ss_dssp TEEEEEETTTCCEEEE--EECS-SSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTCSBSCEEEEEEECCSSCEEE
T ss_pred CcEEEEECCCCCcceE--eecC-CccEEEEEECCCCCEEEEEeCC-----CeEEEEECccCCCcceeEEEecCCCccEEE
Confidence 4678888776654321 1111 1112222222 56677777754 457888887643 22111111111 1112
Q ss_pred EEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCce-EEEEE-CCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 551 TAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA-SATTL-QGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 551 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
+.. -++. ++.|+.+ ..+..||+.+.+-... +....... +++.. ++.+++.|+.+ ..+..||..+
T Consensus 149 ~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~ 215 (340)
T 1got_B 149 CRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVRE 215 (340)
T ss_dssp EEEEETTE-EEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTT
T ss_pred EEECCCCc-EEEEECC-----CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCC
Confidence 222 3555 4455533 4588899888764321 21111112 22222 56788888765 4688899877
Q ss_pred CeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEc
Q psy17309 628 NQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIG 703 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 703 (824)
..-... +........++.+ ++..++.|+.+ ..+..||..+.+-...-..+........+.+ ++++++.|
T Consensus 216 ~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 216 GMCRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp CSEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred CeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 653221 1111122223333 67788888764 4678899877643221111111112222333 67888888
Q ss_pred cCCCCceeeEEEEEECCCC
Q psy17309 704 GFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 704 G~~~~~~~~~v~~yd~~~~ 722 (824)
+.++ .+.+||..+.
T Consensus 289 ~~d~-----~i~vwd~~~~ 302 (340)
T 1got_B 289 YDDF-----NCNVWDALKA 302 (340)
T ss_dssp ETTS-----EEEEEETTTC
T ss_pred CCCC-----eEEEEEcccC
Confidence 8765 6888997664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.27 Score=53.15 Aligned_cols=228 Identities=7% Similarity=-0.078 Sum_probs=124.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..+|.....-..+... .....+.+.. +++.+++++.++. ...++.+|+.+++...+...+. ...+.+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~----~~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~ 230 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPR--HNGAPAF 230 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE----SSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSS--CEEEEEE
T ss_pred ceEEEEcCCCCCCEEEeCC----CCcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCC--cccCEEE
Confidence 6788888876544433211 1112222222 5555566654322 2579999999988776654432 2223333
Q ss_pred E-CCE-EEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe
Q psy17309 554 H-QDV-IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ 629 (824)
Q Consensus 554 ~-~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 629 (824)
. +++ |++.+..++ ...++.+|+.+.+...+...+. ....... +++.+++++..+ ....++.+|..+.+
T Consensus 231 spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 231 SPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGA 302 (415)
T ss_dssp CTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSC
T ss_pred cCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECCC--CCcEEEEEECCCCC
Confidence 2 554 554544322 3579999999988766544321 1222222 555444444321 12468889998876
Q ss_pred EEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE-ECCEEEEEccCC
Q psy17309 630 WTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV-IDDMIFAIGGFN 706 (824)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~ 706 (824)
-..+... .. ....+.+ +++.+++++.... ...++.+|+.+.+...+.... ...+.+. -+++.+++++.+
T Consensus 303 ~~~l~~~--~~-~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 303 PQRITWE--GS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp CEECCCS--SS-EEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEE
T ss_pred EEEEecC--CC-cccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcC
Confidence 5544321 11 2222232 5665555553221 357999999998887765322 1222222 267766666654
Q ss_pred CCceeeEEEEEECCCCcEEecc
Q psy17309 707 GVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
++ ...++++|.+.+....+.
T Consensus 375 ~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 375 GM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp TT--EEEEEEEETTSCCEEECC
T ss_pred CC--ccEEEEEECCCCcEEEee
Confidence 33 347999999887766663
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.48 Score=51.68 Aligned_cols=218 Identities=11% Similarity=0.130 Sum_probs=116.5
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE---CCEEEEEeecCCCcccceEEEEECCCCceEEe------------
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI---GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI------------ 539 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~------------ 539 (824)
..+..||..+.+-...-. . ....-.++... ++..++.|+.+ ..+..||..+..-...
T Consensus 183 g~i~vwd~~~~~~~~~~~--~-h~~~v~~l~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFE--G-HNSTVRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--C-CSSCEEEEEEEESSSCEEEEEEETT-----SCEEEEECCCCCCC------CCSSEEES
T ss_pred CCEEEEECCCCcEEEEEC--C-CCCccEEEEEecCCCCCEEEEEcCC-----CcEEEeeCCCCcccccccccCCcceEee
Confidence 357888888776443211 1 11122233333 45777787754 3577788776542110
Q ss_pred ---------ccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCce-EEEEE-CCEEEEE
Q psy17309 540 ---------APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA-SATTL-QGKIYIT 608 (824)
Q Consensus 540 ---------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~ 608 (824)
..+............++..++.|+.+ ..+..||..+.+-... +....... +++.. ++..++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTTTEEEE
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--ecCCCCCEEEEEEcCCCCEEEE
Confidence 00001111112223455666667644 4588899887653322 11111112 22222 5666777
Q ss_pred cccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCc
Q psy17309 609 GGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS 688 (824)
Q Consensus 609 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 688 (824)
|+.+ ..+..||..+.+-.. .+........++..++..++.|+.+ ..+.+||+.+..-..... .....
T Consensus 328 g~~d-----g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~-~~~~~ 394 (464)
T 3v7d_B 328 ASMD-----TTIRIWDLENGELMY--TLQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYH-HTNLS 394 (464)
T ss_dssp EETT-----SCEEEEETTTTEEEE--EECCCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEE-CTTCC
T ss_pred EeCC-----CcEEEEECCCCcEEE--EEeCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEECCCCceeeeec-CCCCc
Confidence 7755 468899988765322 2222333345556677777777754 468899988754222111 11122
Q ss_pred ceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 689 NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
...+...++++++.|+ ++ .+.+||..+.+-..
T Consensus 395 ~~~~~~~~~~~l~~~~-dg-----~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 395 AITTFYVSDNILVSGS-EN-----QFNIYNLRSGKLVH 426 (464)
T ss_dssp CEEEEEECSSEEEEEE-TT-----EEEEEETTTCCEEE
T ss_pred cEEEEEeCCCEEEEec-CC-----eEEEEECCCCcEEe
Confidence 2334455788888876 33 68999999876554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.036 Score=65.47 Aligned_cols=241 Identities=11% Similarity=0.188 Sum_probs=127.0
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-C--CEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-G--YNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
+..++.|+. ...+..||....++..+..... ....-.+++.. + +..++.|+.+ ..+..||..+++|
T Consensus 21 g~~latg~~-----dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~ 89 (753)
T 3jro_A 21 GKRLATCSS-----DKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRW 89 (753)
T ss_dssp SCCEEEEET-----TTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCeEEEEEC-----CCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcc
Confidence 344556653 2468888887666655322111 11222233332 3 6777788765 3588899999888
Q ss_pred EEeccCCCCcceEEEEEE--C--CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-----------
Q psy17309 537 KEIAPMNFKRCYVSTAVH--Q--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL----------- 601 (824)
Q Consensus 537 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~----------- 601 (824)
..+..+.........+.. + +.+++.|+.+ ..+..||..+..-.....+.........+..
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 766655433333333333 3 6778888754 4688888876531111011111111111111
Q ss_pred ----CCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCCCCCCcceEEEEE--C---CEEEEEecCCCCCccceEEEE
Q psy17309 602 ----QGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPMRHRRSGVSCIAY--H---ECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 602 ----~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~v~~y 670 (824)
++.+++.|+.++ .+..||..+. .+.....+........++.+ + +.+++.||.+ ..+.+|
T Consensus 165 ~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D-----g~I~iw 234 (753)
T 3jro_A 165 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIW 234 (753)
T ss_dssp --CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS-----SCEEEE
T ss_pred ccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC-----CEEEEe
Confidence 356777777653 5777876554 44444433332333333333 3 6888888864 457788
Q ss_pred eCCCCC--EEE-CCCCC-CCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECC-CCcEEeccCCC
Q psy17309 671 NPVTKT--WSQ-VPDMY-NPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEK-TDEWYEATDMN 731 (824)
Q Consensus 671 d~~~~~--W~~-~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p 731 (824)
|+.+.+ +.. +.... ....-.+++. -+++.++.||.++ .+.+||.. ...|.......
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~ 296 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEVH 296 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS-----CEECCBCCSSSCCBCCCCBC
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC-----EEEEEecCCCCCcccccccc
Confidence 877642 111 11111 1111112222 2778888888765 47788877 45677665443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.76 Score=46.31 Aligned_cols=193 Identities=10% Similarity=0.023 Sum_probs=105.9
Q ss_pred EEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 503 GTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 503 ~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
+++.. ++.+|+.... ...+.+||+. ++............-++++.. ++.+|+.... ...+.+||+.
T Consensus 24 ~i~~d~~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~- 91 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK- 91 (300)
T ss_dssp EEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-
T ss_pred eeeECCCCCEEEEcCC-----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-
Confidence 34433 5778886531 2568899988 777654322111222334433 5788887532 2568999998
Q ss_pred CcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEec
Q psy17309 581 NQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGG 657 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 657 (824)
.++...........-++++.- ++.+|+.... ...+.+||+. ++..... ++..........+ +++||+...
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~ 164 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTEN 164 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEET
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEec
Confidence 666544321112222333333 6788887532 2468899987 6655432 2222222223333 578888763
Q ss_pred CCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
. ...+.+||+ +.+..... ++..........+ ++.||+..... ..+.+||+ +.++...
T Consensus 165 ~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 165 Q-----NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIMG-----NKIGRITT-TGEISEY 223 (300)
T ss_dssp T-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEE
T ss_pred C-----CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-CCcEEEE
Confidence 2 246899998 66666542 2222122222333 57888875322 26889998 5566554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.2 Score=54.18 Aligned_cols=241 Identities=13% Similarity=0.029 Sum_probs=121.9
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccC-CCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQV-DPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV 535 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 535 (824)
.+.+++.++.. ..+..||+.+.+....... ...........+.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d~~~~~ 202 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFDLKTLA 202 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTTCC
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEECCCce
Confidence 34566666432 3588999998876652111 11111112222333 77888888643 568999998866
Q ss_pred eEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccC
Q psy17309 536 WKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFN 612 (824)
Q Consensus 536 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~ 612 (824)
....-... ...-.+++.. +..+|+.++.+ ..+.+||+.+.+....-+. ...-.+++.. +++.+++++..
T Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 203 YKATVDLT-GKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEEEECS-SSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEEcCC-CCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECC
Confidence 43221111 1122233333 34677776532 4799999988765433222 2122233332 45444444432
Q ss_pred CCC---cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCC
Q psy17309 613 GHN---CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687 (824)
Q Consensus 613 ~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (824)
... ....+..||+.+.+-......+. ....++.. ++ .+|+.++.+ ..+.+||+.+.+-... ++...
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~--~~~~~ 345 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKS--IPVFD 345 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEE--EECSS
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEE--ecCCC
Confidence 211 13578899998876433321111 11122222 34 688887643 5789999986643322 22221
Q ss_pred cceEEEEE-CCEEEEEccCCCCc----------eeeEEEEEECCCCcEEe
Q psy17309 688 SNFAIEVI-DDMIFAIGGFNGVT----------TIYHVECYDEKTDEWYE 726 (824)
Q Consensus 688 ~~~~~~~~-~~~i~v~GG~~~~~----------~~~~v~~yd~~~~~W~~ 726 (824)
...+++.. +++.+++++..... .-..+.+||+.+.+...
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 22233322 45444444332210 01378999998876544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.15 Score=60.37 Aligned_cols=210 Identities=9% Similarity=0.037 Sum_probs=121.1
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC---C-CcceE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---F-KRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~-~r~~~ 549 (824)
..+..||+.++++..+.....+ ...-.+++.. ++.|++... ..+++||+.+++|......+ . ...-.
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNE-LLDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVR 498 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTC-CCCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred CCEEEEcCCCCcEEEeccCCCC-CCeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeE
Confidence 4688999999998875432111 1222333333 567776432 45899999999987665332 1 11112
Q ss_pred EEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC---CCcccCceEEEE-ECCEEEEEcccCCCCcCCce-EEE
Q psy17309 550 STAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP---MNVERSDASATT-LQGKIYITGGFNGHNCLNSC-EVY 623 (824)
Q Consensus 550 ~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v-~~y 623 (824)
+++.- +|.|++..- . .-+.+||+.+++++.... ++.... .+++. -+|.|++... .-+ .+|
T Consensus 499 ~i~~d~~g~lWigt~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------~Glv~~~ 564 (781)
T 3v9f_A 499 SIAQDSEGRFWIGTF-G-----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------EGLVCFP 564 (781)
T ss_dssp EEEECTTCCEEEEES-S-----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-------TEEEEES
T ss_pred EEEEcCCCCEEEEEc-C-----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-------CCceEEE
Confidence 22222 567777431 1 248899999999887653 222111 11211 2577887532 235 889
Q ss_pred eCCCCeEEEcC---CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECC---CCCCCCcceEEEEE-
Q psy17309 624 DPECNQWTLIE---PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP---DMYNPRSNFAIEVI- 695 (824)
Q Consensus 624 d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~- 695 (824)
|+.+++++... .+|.... .+++.- +|.||+.+. +.+.+||+++.+++... .++.......++..
T Consensus 565 d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~ 636 (781)
T 3v9f_A 565 SARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKD 636 (781)
T ss_dssp CTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEEC
T ss_pred CCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCccccccccCceEEC
Confidence 99988877664 3444333 233333 588888753 45889999998887763 34443333333333
Q ss_pred -CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 696 -DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 696 -~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+|+||+ ||.+ -+..|||+.
T Consensus 637 ~~G~l~~-g~~~------Gl~~f~p~~ 656 (781)
T 3v9f_A 637 HNGLIYF-GSIN------GLCFFNPDI 656 (781)
T ss_dssp TTSCEEE-EETT------EEEEECSCC
T ss_pred CCCEEEE-ECCC------ceEEEChhh
Confidence 566655 5543 356778764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=3 Score=51.99 Aligned_cols=139 Identities=8% Similarity=0.012 Sum_probs=75.4
Q ss_pred cEEEEEccCCCCCCCcceEEEECCCCcEEeeccCCCCCCcCeEEEEEE-CCEEEEEccCCCCcccceEEEEEccCCceeE
Q psy17309 46 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 124 (824)
Q Consensus 46 ~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~-~~~~yv~GG~~~~~~~~~~~~~~~~~~~W~~ 124 (824)
+.+++.||.+ ..|.+||..+.+-...-. + ....-.+++.. +++..+.||.++ .+.++|+.+.+-..
T Consensus 627 ~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~-~--h~~~v~~~~~s~~~~~l~s~~~d~-----~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 627 GQRIASCGAD-----KTLQVFKAETGEKLLDIK-A--HEDEVLCCAFSSDDSYIATCSADK-----KVKIWDSATGKLVH 693 (1249)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCCEEEEEC-C--CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCCEEEEec-c--CCCCEEEEEEecCCCEEEEEeCCC-----eEEEEECCCCceEE
Confidence 4456666633 358999998876433211 1 11222333333 566777787543 48889998876433
Q ss_pred ecccCCCcceeEEEEE----CCEEEEEcCcCCCCCCCcEEEEECCCCeEEEecc-cc----ceeeccCCeEEEEcccCCc
Q psy17309 125 IAPMNFKRCYVSTAVH----QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP-MN----CMIQNVTYNIYVIGGFDGN 195 (824)
Q Consensus 125 ~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~----~~~~~~~~~i~v~GG~~~~ 195 (824)
. .........++.+ ++.+++.|+.++ .+..||+.+.+-...-. .. +.....+++.++.|+.++
T Consensus 694 ~--~~~~~~~v~~~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg- 765 (1249)
T 3sfz_A 694 T--YDEHSEQVNCCHFTNKSNHLLLATGSNDF-----FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG- 765 (1249)
T ss_dssp E--EECCSSCEEEEEECSSSSCCEEEEEETTS-----CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS-
T ss_pred E--EcCCCCcEEEEEEecCCCceEEEEEeCCC-----eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC-
Confidence 2 2222223333333 335666676553 68889988876433211 11 112234567777777664
Q ss_pred eeeceEEEEECCCC
Q psy17309 196 EYYNSCRCFNAVTK 209 (824)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (824)
.+.++|..+.
T Consensus 766 ----~v~vwd~~~~ 775 (1249)
T 3sfz_A 766 ----TLRLWDVRSA 775 (1249)
T ss_dssp ----EEEEEEGGGT
T ss_pred ----eEEEEeCCCC
Confidence 3566666554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.57 Score=54.24 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=74.1
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++.++.||+... ...++++|..+++ |+.-...+.. ....+.++.++.||+... ...+
T Consensus 73 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l 140 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRL 140 (677)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEE
Confidence 3557999999865 2569999998876 8865433211 112245667889988643 2579
Q ss_pred EEEeCCCCc--EEeecC-C-Cc-ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcC
Q psy17309 574 EKYNYTENQ--WSLIAP-M-NV-ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIE 634 (824)
Q Consensus 574 ~~yd~~t~~--W~~~~~-~-p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 634 (824)
..+|..|.+ |+.-.. - +. .....+.++.++.+|+..+.........+..||..+++ |+.-.
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 999998765 876432 1 11 11222334568888875442221234679999998875 87643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.19 Score=51.84 Aligned_cols=228 Identities=11% Similarity=0.054 Sum_probs=119.5
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEE-cccCC-CCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVK-IDQVD-PMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~-~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
+.+++.|+ ...+..||..+..... +.... ......-.+++.. ++..++.|+.+ ..+..||..+.+.
T Consensus 63 ~~~l~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 63 TRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTP 131 (337)
T ss_dssp SSEEEEEC------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECCCC--
T ss_pred CcEEEEcC------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCc
Confidence 34555554 1467888877654211 00000 0111222233333 55666677643 4689999998875
Q ss_pred EEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccC
Q psy17309 537 KEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFN 612 (824)
Q Consensus 537 ~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 612 (824)
.....+...... .+++.. ++..++.|+.+ ..+..||..+.+.... +...........+ ++..++.|+.+
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeee--eecccCceEEEEECCCCCEEEEEecC
Confidence 444333222222 223332 56677777643 4588999988764332 1111112222222 56667777654
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (824)
..+..||..+.+-...-..+. ...+++.. +++.+++|+.+ ..+..||..+.+-..+... .....
T Consensus 205 -----g~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~---~~~v~ 269 (337)
T 1gxr_A 205 -----NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHLH---ESCVL 269 (337)
T ss_dssp -----SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECCC---SSCEE
T ss_pred -----CcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEcCC---cccee
Confidence 468899988776433322221 12222222 57777777753 4688999887654333221 11122
Q ss_pred EEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 692 IEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 692 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.+.+ ++++++.|+.++ .+.+||..+.+-.
T Consensus 270 ~~~~~~~~~~l~~~~~dg-----~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDN-----LLNAWRTPYGASI 300 (337)
T ss_dssp EEEECTTSSEEEEEETTS-----EEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEecCCC-----cEEEEECCCCeEE
Confidence 2223 577778887654 6888998876543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.63 Score=50.72 Aligned_cols=216 Identities=9% Similarity=0.132 Sum_probs=113.3
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 554 (824)
..+..||..+.+-... .. .....-.+++...+.+++.|+.+ ..+..||..+++-...-.... ..-.+++..
T Consensus 142 g~i~vwd~~~~~~~~~--~~-~h~~~V~~l~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~ 212 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQ--LS-GHDGGVWALKYAHGGILVSGSTD-----RTVRVWDIKKGCCTHVFEGHN-STVRCLDIV 212 (464)
T ss_dssp SCEEEEETTTTEEEEE--EC-CCSSCEEEEEECSTTEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEEE
T ss_pred CcEEEEECCCCcEEEE--Ee-CCCcCEEEEEEcCCCEEEEEeCC-----CCEEEEECCCCcEEEEECCCC-CccEEEEEe
Confidence 4588899887764331 11 11122233333433367777754 458889998875332211111 111223332
Q ss_pred ---CCEEEEEecccCCCCCCeEEEEeCCCCcEEee---------------------cCCCcccCceEEEEECCEEEEEcc
Q psy17309 555 ---QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI---------------------APMNVERSDASATTLQGKIYITGG 610 (824)
Q Consensus 555 ---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~---------------------~~~p~~r~~~~~~~~~~~lyv~GG 610 (824)
++..++.|+.+ ..+..||..+..-... ..+........+...++.+++.|+
T Consensus 213 ~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 213 EYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp ESSSCEEEEEEETT-----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCEEEEEcCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 45777777754 3567777766542110 000111111222233556666776
Q ss_pred cCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCc
Q psy17309 611 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS 688 (824)
Q Consensus 611 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 688 (824)
.+ ..+..||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.....
T Consensus 288 ~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~--~~~~h~~ 353 (464)
T 3v7d_B 288 YD-----NTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMY--TLQGHTA 353 (464)
T ss_dssp TT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEE--EECCCSS
T ss_pred CC-----CeEEEEECCCCcEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEE--EEeCCCC
Confidence 55 4688999887654322 1111222222222 56677777754 468899987764222 2222233
Q ss_pred ceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 689 NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
....+.+++..++.|+.++ .+.+||+.+..
T Consensus 354 ~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~ 383 (464)
T 3v7d_B 354 LVGLLRLSDKFLVSAAADG-----SIRGWDANDYS 383 (464)
T ss_dssp CEEEEEECSSEEEEEETTS-----EEEEEETTTCC
T ss_pred cEEEEEEcCCEEEEEeCCC-----cEEEEECCCCc
Confidence 3445556778888888765 68899988754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.40 E-value=0.078 Score=55.90 Aligned_cols=192 Identities=9% Similarity=0.110 Sum_probs=103.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.++++|+.+ ..+..||..+++|..+..+...... .+++.. ++..++.|+.+ ..+.+||..+.++..
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKP 88 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeee
Confidence 45566666543 5688999999877666555432222 233333 56777777743 458889998888765
Q ss_pred ecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCCC-CcceEEEEE--CCEEEEEecCC
Q psy17309 586 IAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRHR-RSGVSCIAY--HECIYVIGGFN 659 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~ 659 (824)
...+.........+.+ +++.++.|+.+ ..+..||..+.. |........+ ......+.+ ++..++.|+.+
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 5433222222223333 56677777754 356677765543 3332222111 122223333 57777777754
Q ss_pred CCCccceEEEEeCCCCC---------E-------EECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 660 GMSRMCNGEKYNPVTKT---------W-------SQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~---------W-------~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
..+..||..... | ..+..+.........+.+ +++.++.|+.++ .+.+||..+
T Consensus 164 -----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~ 233 (372)
T 1k8k_C 164 -----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----TVCLADADK 233 (372)
T ss_dssp -----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----EEEEEEGGG
T ss_pred -----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-----EEEEEECCC
Confidence 467788854211 1 111111111111222333 666777777654 588888876
Q ss_pred CcE
Q psy17309 722 DEW 724 (824)
Q Consensus 722 ~~W 724 (824)
.+-
T Consensus 234 ~~~ 236 (372)
T 1k8k_C 234 KMA 236 (372)
T ss_dssp TTE
T ss_pred Cce
Confidence 543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.72 Score=48.33 Aligned_cols=249 Identities=8% Similarity=0.025 Sum_probs=116.4
Q ss_pred CEEEEEccCCCCCC-CceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 460 EILFAIGGWSGGSP-TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
...+.+|.+..+.. .-.++.+|+.+.++..+.......|+ .++.. +..||+.+........-.+|.+|..+++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~---~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS---YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC---SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc---eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 45667787655332 22356678888887765332111121 12333 44576665432111122345666666777
Q ss_pred EEeccCCCC-cceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCc-EEee-------cCCCcc-----cCceEEEEE
Q psy17309 537 KEIAPMNFK-RCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQ-WSLI-------APMNVE-----RSDASATTL 601 (824)
Q Consensus 537 ~~~~~~~~~-r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~-------~~~p~~-----r~~~~~~~~ 601 (824)
..+...+.. ..-..++. ++ .||+.+.. ...+.+|+..++. ...+ ..-|.+ ...|+++..
T Consensus 90 ~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT-NGKNIVTANYS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEEEEECSSSCEEEEEE-CSSEEEEEETT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred EEeeEeccCCCCcEEEEE-CCCEEEEEECC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence 766654422 22233334 55 46665431 2567888876432 1111 101110 011334433
Q ss_pred -CC-EEEEEcccCCCCcCCceEEEeCCCCe-------EEEc-----CCCCCCCcceEEEEE-CC-EEEEEecCCCCCccc
Q psy17309 602 -QG-KIYITGGFNGHNCLNSCEVYDPECNQ-------WTLI-----EPMRHRRSGVSCIAY-HE-CIYVIGGFNGMSRMC 665 (824)
Q Consensus 602 -~~-~lyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~-----~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 665 (824)
++ .||+.+.. .+.+.+|+..... .... ...+.......++.. ++ .+|+.+.. .+
T Consensus 164 pdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~ 233 (361)
T 3scy_A 164 PDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----GG 233 (361)
T ss_dssp TTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----TC
T ss_pred CCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----CC
Confidence 45 47776432 2457777655433 2111 111222111222322 45 47776632 25
Q ss_pred eEEEEeCCCCCEEECC---CCCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEEC--CCCcEEeccCCC
Q psy17309 666 NGEKYNPVTKTWSQVP---DMYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDE--KTDEWYEATDMN 731 (824)
Q Consensus 666 ~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p 731 (824)
.+.+||..+.+.+.+. ..+........+.+ +++ ||+.+.... +.+.+|+. .+.+++.+..++
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~----~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA----DGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS----CEEEEEEECTTTCCEEEEEEEE
T ss_pred eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC----CEEEEEEEcCCCCcEEEeeEec
Confidence 6888888777665543 22322222333334 554 555542201 24555554 567777665444
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.21 Score=53.55 Aligned_cols=226 Identities=12% Similarity=0.144 Sum_probs=114.8
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCce--E
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVW--K 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~ 537 (824)
+..+++|+.. ..+..||..+.+.... .. ...........++.+++.|+.+ ..+..||..+..- .
T Consensus 146 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~--~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 211 (401)
T 4aez_A 146 GSFLSVGLGN-----GLVDIYDVESQTKLRT--MA--GHQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRIANHQIG 211 (401)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCCEEEE--EC--CCSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEE
T ss_pred CCEEEEECCC-----CeEEEEECcCCeEEEE--ec--CCCCceEEEEECCCEEEEEcCC-----CCEEEEecccCcceee
Confidence 3455555532 3588899887765432 11 1111222233355677777654 4688899874332 1
Q ss_pred EeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe-ecCCCcccCceEEEEE--CCEEEEEcccCC
Q psy17309 538 EIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL-IAPMNVERSDASATTL--QGKIYITGGFNG 613 (824)
Q Consensus 538 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~ 613 (824)
.+... ...-.+++.. ++..++.|+.+ ..+.+||..+..-.. +.... ..-.+++.. ++.+++.||..
T Consensus 212 ~~~~~--~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs- 281 (401)
T 4aez_A 212 TLQGH--SSEVCGLAWRSDGLQLASGGND-----NVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGT- 281 (401)
T ss_dssp EEECC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCT-
T ss_pred EEcCC--CCCeeEEEEcCCCCEEEEEeCC-----CeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCC-
Confidence 22111 1111222222 66777888754 468889988754322 21111 111223333 45677776411
Q ss_pred CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCE-EEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcce
Q psy17309 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF 690 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (824)
....+..||..+.+-...-.. .. ....+.+ +++ +++.+|.. ...+.+||..+........++......
T Consensus 282 --~d~~i~i~d~~~~~~~~~~~~--~~-~v~~~~~s~~~~~l~~~~g~~----dg~i~v~~~~~~~~~~~~~~~~h~~~v 352 (401)
T 4aez_A 282 --MDKQIHFWNAATGARVNTVDA--GS-QVTSLIWSPHSKEIMSTHGFP----DNNLSIWSYSSSGLTKQVDIPAHDTRV 352 (401)
T ss_dssp --TTCEEEEEETTTCCEEEEEEC--SS-CEEEEEECSSSSEEEEEECTT----TCEEEEEEEETTEEEEEEEEECCSSCC
T ss_pred --CCCEEEEEECCCCCEEEEEeC--CC-cEEEEEECCCCCeEEEEeecC----CCcEEEEecCCccceeEEEecCCCCCE
Confidence 124688999887654332211 11 1222333 444 44443432 246888888877666553332222222
Q ss_pred EEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 691 AIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 691 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+.+ +++.++.||.++ .+.+||..+.+
T Consensus 353 ~~~~~s~dg~~l~s~~~dg-----~i~iw~~~~~~ 382 (401)
T 4aez_A 353 LYSALSPDGRILSTAASDE-----NLKFWRVYDGD 382 (401)
T ss_dssp CEEEECTTSSEEEEECTTS-----EEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCC-----cEEEEECCCCc
Confidence 22222 677888888765 68888887754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=1.1 Score=46.25 Aligned_cols=197 Identities=7% Similarity=-0.012 Sum_probs=102.3
Q ss_pred CCEEEEEeecCC-CcccceEEEEECCCCceEEeccCCCCcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
++.+|+...... ......++.+|+.+.+-...-+... ..+.++.. + +.+|+.++. .+.+.++|+.+.+-.
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTV-----NSAVTAIDAKTGEVK 124 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETT-----TTEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecC-----CCEEEEEeCCCCeeE
Confidence 457777663211 1124679999999887543322221 12223333 3 458887653 257999999887743
Q ss_pred eecCCCccc--------CceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-C-CEE
Q psy17309 585 LIAPMNVER--------SDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-H-ECI 652 (824)
Q Consensus 585 ~~~~~p~~r--------~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~i 652 (824)
..-+.+... ..++++.. ++.+|+.+... ...+..||+.+.+-...-+... ......+.. + +.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEGKRL 199 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTTTEE
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCC-CccceEEECCCCCEE
Confidence 322221111 12333333 45677776322 2468999998876433322111 111222222 4 456
Q ss_pred EEEecCCCCCccceEEEEeCCCCCEEECCCC--CCCCcce-EEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 653 YVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM--YNPRSNF-AIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 653 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
|+... ...+.++|+.+.+-...-.. ..+.... +++.. ++.+|+.+..+ ..+.+||+.+.+....
T Consensus 200 ~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 200 YTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-----AEVLVVDTRNGNILAK 268 (353)
T ss_dssp EEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-----SEEEEEETTTCCEEEE
T ss_pred EEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEE
Confidence 66543 25788999987753322111 1112222 23333 45677765322 3789999988776544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.59 Score=52.80 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=72.2
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEEC-CCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCe
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNA-VTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNS 572 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~-~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 572 (824)
-++.++.||+.... ...++++|. .+++ |+.-...+.. ....+.++.+++||+... ...
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~ 126 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGH 126 (571)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCE
Confidence 45669999998652 246999999 7766 8864432211 112235667899998743 257
Q ss_pred EEEEeCCCCc--EEeecCC-Ccc-cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 573 VEKYNYTENQ--WSLIAPM-NVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 573 ~~~yd~~t~~--W~~~~~~-p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
++.+|..+.+ |+.-..- +.. ....+-++.++++|+..+.........+..||+++++ |+.-
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 9999998874 8753221 111 1122234568998875432111123578999998765 8754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.28 Score=50.87 Aligned_cols=210 Identities=11% Similarity=0.106 Sum_probs=108.4
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..+|..+.+-...-... +....+++.. ++..++.|+.+ ..+..||..+.+-...-... ...-.+++.
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~~-~~~v~~~~~ 172 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAG---PVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSLDTR-GKFILSIAY 172 (321)
T ss_dssp SEEEEEETTTTEEEEEEECC---TTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEEECS-SSCEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCC---CccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEecCC-CceEEEEEE
Confidence 46778888776543311111 1111122222 55666777643 45788888776533211111 111122222
Q ss_pred -ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCc-eEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 -HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSD-ASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 -~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
-+++.++.|+.+ ..+..||..+.+-... +...... .+++.. ++++++.|+.+ ..+..||..+...
T Consensus 173 spdg~~lasg~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~ 240 (321)
T 3ow8_A 173 SPDGKYLASGAID-----GIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANL 240 (321)
T ss_dssp CTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCE
T ss_pred CCCCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcce
Confidence 266777777754 4588899988753221 2111111 122222 67777888765 3588899877654
Q ss_pred EEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCC
Q psy17309 631 TLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFN 706 (824)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 706 (824)
... +.........+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.........+.+ +++.++.||.+
T Consensus 241 ~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 241 AGT--LSGHASWVLNVAFCPDDTHFVSSSSD-----KSVKVWDVGTRTCVH--TFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEE--EcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCEEEE--EEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 322 2222222223333 57777778764 468889987654322 11111122222333 56777888876
Q ss_pred CCceeeEEEEEEC
Q psy17309 707 GVTTIYHVECYDE 719 (824)
Q Consensus 707 ~~~~~~~v~~yd~ 719 (824)
+ .+.+||.
T Consensus 312 ~-----~i~vwd~ 319 (321)
T 3ow8_A 312 Q-----EIHIYDC 319 (321)
T ss_dssp C-----CEEEEEC
T ss_pred C-----eEEEEeC
Confidence 5 4666763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.24 Score=51.95 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=96.6
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.+++.||.+ ..+..||..+++|.............-.+++.. ++..++.|+.++ .+..||..+..+..
T Consensus 28 g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 28 GTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDFEC 97 (345)
T ss_dssp SSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-EEE
T ss_pred CCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCeEE
Confidence 3455566532 357788888887753211111112222233333 567777787653 47778877777665
Q ss_pred eccCCCCcceE-EEEEE-CCEEEEEecccCCCCCCeEEEEeCCCC-cEEeecCCCcccCceEEEEE--CCEEEEEcccCC
Q psy17309 539 IAPMNFKRCYV-STAVH-QDVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIAPMNVERSDASATTL--QGKIYITGGFNG 613 (824)
Q Consensus 539 ~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~ 613 (824)
+..+....... +++.. ++.+++.|+.+ ..+..+|..+. .+..+..+.........+.. ++.+++.|+.+
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d- 171 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD- 171 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT-
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-
Confidence 54443222222 22322 56777778754 45777887654 33333222222222222222 56777777765
Q ss_pred CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCC
Q psy17309 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFN 659 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 659 (824)
..+..||..++.|.....+.........+.+ +++.++.|+.+
T Consensus 172 ----~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 172 ----DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp ----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ----CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 3678899888888765444333333333333 57777778765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.065 Score=56.81 Aligned_cols=239 Identities=11% Similarity=0.094 Sum_probs=113.0
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCC-ceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCc-e
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPR-AYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKV-W 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W 536 (824)
+.+++.|+.. ..+..||..+..|..+. ...... .-.+++.. ++..++.|+.+ ..+..||..++. |
T Consensus 23 g~~l~~~~~d-----~~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 23 RTEFVTTTAT-----NQVELYEQDGNGWKHAR--TFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTW 90 (377)
T ss_dssp SSEEECCCSS-----SCBCEEEEETTEEEECC--CBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CC
T ss_pred CCEEEEecCC-----CEEEEEEccCCceEEEE--EEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCce
Confidence 4456666532 35677888888776632 222112 22233333 56777777754 358888988876 5
Q ss_pred EEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCc-EEeecCCCc-ccCce-EEEEE-CCEEEEEcc
Q psy17309 537 KEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ-WSLIAPMNV-ERSDA-SATTL-QGKIYITGG 610 (824)
Q Consensus 537 ~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~p~-~r~~~-~~~~~-~~~lyv~GG 610 (824)
.....+...... .+++.. ++..++.|+.+ ..+..||..+.+ |.....+.. ..... +++.. ++++++.|+
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 443333222222 222222 56677777754 357788887764 433333322 12222 22222 567777777
Q ss_pred cCCCCcCCceEEEeCCCCe----------------EEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeC
Q psy17309 611 FNGHNCLNSCEVYDPECNQ----------------WTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 611 ~~~~~~~~~v~~yd~~~~~----------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
.+ ..+..||..+.. -..+..+ .......++.+ ++++++.|+.+ ..+.+||.
T Consensus 166 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iwd~ 234 (377)
T 3dwl_C 166 AD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD-----SSVTIAYP 234 (377)
T ss_dssp SS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT-----TEEC-CEE
T ss_pred CC-----CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC-----CcEEEEEC
Confidence 65 357788875332 2222222 11222233333 67777777754 35777777
Q ss_pred CCCCE--EECCCCCCCCcceEE--EEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCC
Q psy17309 673 VTKTW--SQVPDMYNPRSNFAI--EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNI 732 (824)
Q Consensus 673 ~~~~W--~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 732 (824)
.+.+- ..+..+......... ..-++++++.|+.+ .+.+|+.....|.....+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY------SPILLQGNESGWAHTRDLDA 292 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS------SEEEECCCC---CCSBCCCS
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC------cEEEEEeCCCceEEEeeecc
Confidence 66542 223222222221222 22378888777533 24578877777877655443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.24 Score=51.50 Aligned_cols=236 Identities=14% Similarity=0.204 Sum_probs=117.1
Q ss_pred EEEEccCCCCCCCceEEEEECCCCcEEEcccCCCC-CCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCC-----
Q psy17309 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTK----- 534 (824)
Q Consensus 462 l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~----- 534 (824)
+++.|+.+ ..+..||..++.+..+...... ....-.+++.. ++.+++.|+.+ ..+..||....
T Consensus 26 ~las~~~D-----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 26 ILATGSTD-----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----STVSIWAKEESADRTF 95 (330)
T ss_dssp EEEEEESS-----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----SCEEEEEC-------C
T ss_pred EEEEEcCC-----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcccCcCccc
Confidence 55555532 3577888876543322111111 11222233333 56777788755 34777777432
Q ss_pred ceEEeccCCCCcceE-EEEEE-CCEEEEEecccCCCCCCeEEEEeCCC--CcEEeecCCCcccCceEEEEE--CCEEEEE
Q psy17309 535 VWKEIAPMNFKRCYV-STAVH-QDVIYAMGGYNGQRRQNSVEKYNYTE--NQWSLIAPMNVERSDASATTL--QGKIYIT 608 (824)
Q Consensus 535 ~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~ 608 (824)
.+..+..+....... +++.. ++..++.|+.+ ..+.++|... ..++.+..+.........+.. ++.+++.
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 233322222111111 22222 56777777754 4577888743 334443333322222223333 5677778
Q ss_pred cccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--C--CEEEEEecCCCCCccceEEEEeCCC------CCEE
Q psy17309 609 GGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--H--ECIYVIGGFNGMSRMCNGEKYNPVT------KTWS 678 (824)
Q Consensus 609 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~------~~W~ 678 (824)
|+.+ ..+..||..+..|..+..+.........+.+ + +..++.|+.++ .+.+||... ..|.
T Consensus 171 ~s~D-----~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 171 SSYD-----DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp EETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEE
T ss_pred EcCC-----CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeE
Confidence 8765 3577888877777766544332222223333 2 34566676543 455555432 2455
Q ss_pred ECCCCCC--CCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 679 QVPDMYN--PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 679 ~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
....++. ...-.+++...+.+++.||.++ .+.+||..+..|..+
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVF 286 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTS-----CEEEEEEETTEEEEE
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEE
Confidence 4443332 1222233333455677777665 577888888888655
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.34 E-value=0.26 Score=50.53 Aligned_cols=185 Identities=8% Similarity=0.138 Sum_probs=100.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++..++.|+.+ ..+..||..+.+....-.... ..-.+++.. ++.+++.|+.+ ..+.+||..+.+-...
T Consensus 34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKT 102 (312)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE
T ss_pred CCCEEEEeeCC-----CeEEEEeCCCcccchhhccCC-CceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEE
Confidence 45566667654 347888888777654322111 111223322 56777777753 4688899887653221
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
+.........+.+ ++.+++.|+.+ ..+..||..+.+-... ++........+.+ ++.+++.|+.+
T Consensus 103 --~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--- 170 (312)
T 4ery_A 103 --LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD--- 170 (312)
T ss_dssp --EECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred --EcCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC---
Confidence 1111111122222 56677777765 3688899887653222 2222222233333 57777888764
Q ss_pred ccceEEEEeCCCCCEEEC-CCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 663 RMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+-... .....+ ....+.+ +++.++.|+.++ .+.+||..+.+-
T Consensus 171 --~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~ 226 (312)
T 4ery_A 171 --GLCRIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDN-----TLKLWDYSKGKC 226 (312)
T ss_dssp --SCEEEEETTTCCEEEEECCSSCC--CEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEE
T ss_pred --CcEEEEECCCCceeeEEeccCCC--ceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcE
Confidence 4688999887654322 111111 1122222 677777777654 688899887653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.39 Score=51.38 Aligned_cols=221 Identities=9% Similarity=0.073 Sum_probs=114.6
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||..+.+........ ....-.+++.. ++..+++|+.+ ..+..||..+++-...-. ........+.
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~ 183 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTMA--GHQARVGCLS 183 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CCSSCEEEEE
T ss_pred CeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEec--CCCCceEEEE
Confidence 46889999888776532221 12222333333 56677777654 358899988876433221 1122223333
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
.++.+++.|+.+ ..+..||..+..-. +..+............ ++.+++.|+.+ ..+..||..+.+-.
T Consensus 184 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 184 WNRHVLSSGSRS-----GAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGND-----NVVQIWDARSSIPK 252 (401)
T ss_dssp EETTEEEEEETT-----SEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCSSEE
T ss_pred ECCCEEEEEcCC-----CCEEEEecccCcce-eeEEcCCCCCeeEEEEcCCCCEEEEEeCC-----CeEEEccCCCCCcc
Confidence 466777777743 56888888743211 1111111112222222 66777788765 46889998875432
Q ss_pred E-cCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCE-EEEEcc-
Q psy17309 632 L-IEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDM-IFAIGG- 704 (824)
Q Consensus 632 ~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG- 704 (824)
. +..... .-.+++.. +..+++.||.. ....+..||..+.+-...-. ... ....+.+ +++ +++.+|
T Consensus 253 ~~~~~~~~--~v~~~~~~p~~~~ll~~~~gs---~d~~i~i~d~~~~~~~~~~~--~~~-~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 253 FTKTNHNA--AVKAVAWCPWQSNLLATGGGT---MDKQIHFWNAATGARVNTVD--AGS-QVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp EEECCCSS--CCCEEEECTTSTTEEEEECCT---TTCEEEEEETTTCCEEEEEE--CSS-CEEEEEECSSSSEEEEEECT
T ss_pred EEecCCcc--eEEEEEECCCCCCEEEEecCC---CCCEEEEEECCCCCEEEEEe--CCC-cEEEEEECCCCCeEEEEeec
Confidence 2 111111 11223333 45677777511 12568899988765433211 111 1222222 444 444434
Q ss_pred CCCCceeeEEEEEECCCCcEEecc
Q psy17309 705 FNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.++ .+.+||..+.......
T Consensus 325 ~dg-----~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 325 PDN-----NLSIWSYSSSGLTKQV 343 (401)
T ss_dssp TTC-----EEEEEEEETTEEEEEE
T ss_pred CCC-----cEEEEecCCccceeEE
Confidence 333 6888888877666553
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.08 Score=55.65 Aligned_cols=180 Identities=9% Similarity=0.149 Sum_probs=99.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCC--CcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF--KRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
++.+++.||.+ ..+..||..+++|.....+.. ...-.+++.. ++..++.|+.+ ..+..+|..+..++
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWKKNQDDFE 96 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECCC-EE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEEccCCCeE
Confidence 55667777754 357888888887754332211 1112223322 56777778754 34677787777765
Q ss_pred eecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEEE--CCEEEEEecCC
Q psy17309 585 LIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFN 659 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 659 (824)
.+..+.........+.. ++++++.|+.+ ..+..||..+. .+..+..+.........+.. ++.+++.|+.+
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 55444332222233333 57777888765 35778887654 23333222222222233333 57777777764
Q ss_pred CCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
..+..||..+..|..+..+.........+.+ +++.++.|+.++
T Consensus 172 -----~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 172 -----DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp -----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -----CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 4578888888887654433322222223333 677888888765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.39 Score=49.18 Aligned_cols=224 Identities=17% Similarity=0.193 Sum_probs=112.4
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceE-
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK- 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~- 537 (824)
+..++.|+. ...+..||..+.+-... .... ...-.++... ++..++.|+.+ ..+..||..+++-.
T Consensus 25 ~~~l~s~~~-----dg~v~lWd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~ 91 (304)
T 2ynn_A 25 EPWVLTTLY-----SGRVELWNYETQVEVRS--IQVT-ETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVV 91 (304)
T ss_dssp SSEEEEEET-----TSEEEEEETTTTEEEEE--EECC-SSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEE
T ss_pred CCEEEEEcC-----CCcEEEEECCCCceeEE--eecc-CCcEEEEEEeCCCCEEEEECCC-----CEEEEEECCCCcEEE
Confidence 445555653 24688899887754331 1110 1111223333 55667777654 46888998876532
Q ss_pred EeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE---CCEEEEEcccCC
Q psy17309 538 EIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL---QGKIYITGGFNG 613 (824)
Q Consensus 538 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~ 613 (824)
.+..- ...-.+++.. ++.+++.|+.+ ..+..+|..++. .....+........++.+ ++.+++.|+.+
T Consensus 92 ~~~~h--~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D- 162 (304)
T 2ynn_A 92 DFEAH--PDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD- 162 (304)
T ss_dssp EEECC--SSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT-
T ss_pred EEeCC--CCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC-
Confidence 12111 1111223332 56677777754 457788876652 111111111111122222 45677788765
Q ss_pred CCcCCceEEEeCCCCe--EEEcCCCCCCCcceEEEEE----CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCC
Q psy17309 614 HNCLNSCEVYDPECNQ--WTLIEPMRHRRSGVSCIAY----HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (824)
..+..||..+.. ..... ...+ ....+.+ ++.+++.|+.+ ..+.++|..+.+-. ..+....
T Consensus 163 ----~~v~iwd~~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~--~~~~~h~ 228 (304)
T 2ynn_A 163 ----RTVKVWSLGQSTPNFTLTT--GQER-GVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCV--ATLEGHM 228 (304)
T ss_dssp ----SEEEEEETTCSSCSEEEEC--CCTT-CEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEE--EEEECCS
T ss_pred ----CeEEEEECCCCCccceecc--CCcC-cEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccc--eeeCCCC
Confidence 367788876543 11111 1111 1122222 45667777654 46888998765422 1121111
Q ss_pred cceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 688 SNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 688 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.....+.+ ++.+++.|+.++ .+.+||..+.+-
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg-----~i~iWd~~~~~~ 262 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKV 262 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCE
T ss_pred CCEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCce
Confidence 22222333 567888888765 578899877543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.51 Score=50.43 Aligned_cols=194 Identities=9% Similarity=0.025 Sum_probs=98.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceE-----EeccCCCC-cceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-----EIAPMNFK-RCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~-r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
++.+++.|+.+ ..+..||..++... .+..+... ..-.+++.. ++ .+++.|+.+ ..+.+||..
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~ 162 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVWDVG 162 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEEETT
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEEECC
Confidence 56777888754 45888998876431 11111111 111223333 33 577777754 458899998
Q ss_pred CCcEEeecC-CCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEE-EECCEEEEE
Q psy17309 580 ENQWSLIAP-MNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCI-AYHECIYVI 655 (824)
Q Consensus 580 t~~W~~~~~-~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~ 655 (824)
+.+....-. ......-.+++.. ++.+++.|+.+ ..+..||+.+.+-...- ..........++ .-++++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT 237 (402)
T ss_dssp TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred CCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence 876543211 1111112222222 66777777754 46889999887643321 111111112223 236777777
Q ss_pred ecCCCCCccceEEEEeCCCCCE-EECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKTW-SQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
|.... ....+.+||..+..- .....+........++.. +..|++.|+.++ .+.+||..+.+
T Consensus 238 g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-----~i~i~d~~~~~ 301 (402)
T 2aq5_A 238 GFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-----SIRYFEITSEA 301 (402)
T ss_dssp EECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-----CEEEEEECSST
T ss_pred eccCC--CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-----eEEEEEecCCC
Confidence 72110 135788999876431 001111111112222222 345666775554 57788887765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.21 E-value=1 Score=44.94 Aligned_cols=229 Identities=8% Similarity=-0.055 Sum_probs=121.9
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCC-CceEEeccCCCCcceEE
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVT-KVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~ 550 (824)
....+..+|+.+++...+... ...-.+++.. ++..+++++ ...++.+|..+ ++...+........-..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred cceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccc
Confidence 345788899988877654221 1122233333 555555554 14799999998 87776654332111112
Q ss_pred EE-EECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEcccCCCCcCCceEEEeCCC
Q psy17309 551 TA-VHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 551 ~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
++ .-+++.+++++.... ....++.++..+..-..+..... ...++.. ++ .|++.++.++. ..++.+|..+
T Consensus 90 ~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~---~~l~~~~~~~ 162 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQV---FDIYSMDIDS 162 (297)
T ss_dssp CEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETTE---EEEEEEETTT
T ss_pred eEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCCc---eEEEEEECCC
Confidence 22 235666666553222 34688999988776555443321 2222222 44 45545544321 3567777877
Q ss_pred CeEEEcCCCCCCCcceEEEEE--CCEEEEEec-CCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEE
Q psy17309 628 NQWTLIEPMRHRRSGVSCIAY--HECIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAI 702 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 702 (824)
.....+...+. ....+.. +++.+++++ .++ ...++.+++.......+.... .....+.+ +++.+++
T Consensus 163 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 163 GVETRLTHGEG---RNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp CCEEECCCSSS---CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEE
T ss_pred CcceEcccCCC---ccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEE
Confidence 77666544322 1122222 555444443 222 357888887777776664322 11222223 5555555
Q ss_pred ccCCCCc------eeeEEEEEECCCCcEEec
Q psy17309 703 GGFNGVT------TIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 703 GG~~~~~------~~~~v~~yd~~~~~W~~~ 727 (824)
++.+... ....+++||.++.+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 5443221 235799999988766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.17 Score=59.89 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=117.2
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..+++|+. ...+..||..+.+....-. . ....-.+++.. ++..+++|+.+ ..+..||..+++...
T Consensus 25 ~~~la~~~~-----~g~v~iwd~~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 25 EPWVLTTLY-----SGRVEIWNYETQVEVRSIQ--V-TETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVV 91 (814)
T ss_dssp SSEEEEEET-----TSEEEEEETTTTEEEEEEE--C-CSSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEE
T ss_pred CCEEEEEeC-----CCEEEEEECCCCceEEEEe--c-CCCcEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 445666653 2468899988876544211 1 11122233333 56667777653 468999998877543
Q ss_pred eccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCC-cEEeecCCCc-ccCceEEEEE--CCEEEEEcccCC
Q psy17309 539 IAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIAPMNV-ERSDASATTL--QGKIYITGGFNG 613 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~ 613 (824)
.-.... ..-.+++.. ++..++.|+.+ ..+.+||..++ ..... +.. ...-.+++.. ++.+++.|+.+
T Consensus 92 ~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d- 162 (814)
T 3mkq_A 92 DFEAHP-DYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD- 162 (814)
T ss_dssp EEECCS-SCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT-
T ss_pred EEecCC-CCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC-
Confidence 221111 111223332 55566666643 46888898776 22221 111 1111223333 45677777755
Q ss_pred CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcce
Q psy17309 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF 690 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (824)
..+..||..+..-...-..........++.. ++..++.|+.+ ..+..||..+.+-... +.......
T Consensus 163 ----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~--~~~~~~~v 231 (814)
T 3mkq_A 163 ----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVAT--LEGHMSNV 231 (814)
T ss_dssp ----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEE--EECCSSCE
T ss_pred ----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEE--EcCCCCCE
Confidence 3688888765432111111111112222222 67777777754 4688899876643221 11111122
Q ss_pred EEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 691 AIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 691 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+.+ ++.+++.|+.++ .+.+||+.+.+-
T Consensus 232 ~~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~ 262 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKV 262 (814)
T ss_dssp EEEEECSSSSEEEEEETTS-----CEEEEETTTCSE
T ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 22222 667788887665 577888877543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.34 Score=49.89 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=109.6
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
..++.|+. ...+..||..+.+.......... ...-.+++.. ++..++.|+.+ ..+..||..+.+....
T Consensus 110 ~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 110 CTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp SEEEEEES-----SSEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE
T ss_pred CEEEEEcC-----CCcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeee
Confidence 34555543 24688899888764332111111 1112233333 55667777654 3588999988764332
Q ss_pred ccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcC
Q psy17309 540 APMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCL 617 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 617 (824)
-..... .-.+++.. ++..++.|+.+ ..+..||+.+.+-...-..+. .-.+++.. +++.+++|+.+
T Consensus 179 ~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~----- 245 (337)
T 1gxr_A 179 FQGHTD-GASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES----- 245 (337)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT-----
T ss_pred eecccC-ceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCC-----
Confidence 221111 11223332 56677777643 568899998776433222221 12222322 56677777654
Q ss_pred CceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE-
Q psy17309 618 NSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV- 694 (824)
Q Consensus 618 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~- 694 (824)
..+..||..+..-..+... ......+.+ ++++++.|+.+ ..+..||..+.+-..... ....-.+++.
T Consensus 246 ~~i~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~--~~~~v~~~~~s 315 (337)
T 1gxr_A 246 SNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK--ESSSVLSCDIS 315 (337)
T ss_dssp SCEEEEETTSSCEEEECCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CSSCEEEEEEC
T ss_pred CcEEEEECCCCCeEEEcCC---ccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec--CCCcEEEEEEC
Confidence 4688899887654333221 122222333 57777777753 468899988765432211 1111122222
Q ss_pred ECCEEEEEccCCC
Q psy17309 695 IDDMIFAIGGFNG 707 (824)
Q Consensus 695 ~~~~i~v~GG~~~ 707 (824)
-+++.++.|+.++
T Consensus 316 ~~~~~l~~~~~dg 328 (337)
T 1gxr_A 316 VDDKYIVTGSGDK 328 (337)
T ss_dssp TTSCEEEEEETTS
T ss_pred CCCCEEEEecCCC
Confidence 2667777777654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.96 Score=48.33 Aligned_cols=225 Identities=9% Similarity=0.042 Sum_probs=116.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCce-E
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVW-K 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~ 537 (824)
+..++.|+. ...+..||..+.+-...- . .....-.+++.. ++.+++.|+.+ ..+..||..+.+- .
T Consensus 109 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~--~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 109 MRRFILGTT-----EGDIKVLDSNFNLQREID--Q-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSNPR 175 (420)
T ss_dssp SCEEEEEET-----TSCEEEECTTSCEEEEET--T-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCCCE
T ss_pred CCEEEEEEC-----CCCEEEEeCCCcceeeec--c-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCcCce
Confidence 345666653 235788888877654421 1 112222333333 56677777754 4688999887542 1
Q ss_pred EeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCcccCce-EEEE--------------
Q psy17309 538 EIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNVERSDA-SATT-------------- 600 (824)
Q Consensus 538 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~-~~~~-------------- 600 (824)
.+... ...-.+++.. ++..++.|+.+ ..+..||..+.+-... .......... +++.
T Consensus 176 ~~~~h--~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 176 TLIGH--RATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp EEECC--SSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred EEcCC--CCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 22111 1112233333 56666777754 4588888887653222 1111111111 1111
Q ss_pred --------ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCE-EEEEecCCCCCccceEEE
Q psy17309 601 --------LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HEC-IYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 601 --------~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~ 669 (824)
-++++++.|+.+ ..+..||..+.+-...-..... ....++.+ ++. +++.|+.+ ..+.+
T Consensus 249 ~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~d-----g~i~v 317 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQLPSKFT-CSCNSLTVDGNNANYIYAGYEN-----GMLAQ 317 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEECCTTS-SCEEEEEECSSCTTEEEEEETT-----SEEEE
T ss_pred cccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEcccccC-CCceeEEEeCCCCCEEEEEeCC-----CeEEE
Confidence 156777777755 3588999887653222111111 12223333 454 77777754 47889
Q ss_pred EeCCCCCE--EECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 670 YNPVTKTW--SQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 670 yd~~~~~W--~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
||..+.+- ..+.. .....-..+...++++++.||.++ .+.+||+.+
T Consensus 318 wd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~ 365 (420)
T 3vl1_A 318 WDLRSPECPVGEFLI-NEGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD 365 (420)
T ss_dssp EETTCTTSCSEEEEE-STTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred EEcCCCcCchhhhhc-cCCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence 99876531 11111 011122233445888889988764 577777655
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=1.3 Score=51.14 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=73.1
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++.++.||+... ...++++|..+++ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 62 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 129 (668)
T 1kv9_A 62 PLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (668)
T ss_dssp CEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEE
Confidence 3567999999864 2579999998876 8864433211 011234567889988642 2579
Q ss_pred EEEeCCCCc--EEeecCCCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 574 EKYNYTENQ--WSLIAPMNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 574 ~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
+.+|..|.+ |+.-..-+. .....+.++.++.+|+..+.........+..||+++++ |+.-
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 999998875 876432111 11222335568888874332111234579999998875 8764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=1.3 Score=47.26 Aligned_cols=187 Identities=9% Similarity=0.090 Sum_probs=98.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++..++.|+.+ ..+..||..+++-...-... ...-.+++.. ++.+++.|+.+ ..+.+||..+.+- +
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~--~ 174 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFNLQREIDQAH-VSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSN--P 174 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSCEEEEETTSS-SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCC--C
T ss_pred CCCEEEEEECC-----CCEEEEeCCCcceeeecccc-cCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCcC--c
Confidence 67778888754 35888998876543332111 1122233333 56677777743 4688899876542 1
Q ss_pred cCCCcccCc-eEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-CCCCcceEEEE----------------
Q psy17309 587 APMNVERSD-ASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RHRRSGVSCIA---------------- 647 (824)
Q Consensus 587 ~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~---------------- 647 (824)
..+...... .+++.. ++..++.|+.+ ..+..||..+.+-...-.. .........+.
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 111111111 222233 56666777755 3688899887653322111 11111111111
Q ss_pred -------ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEE
Q psy17309 648 -------YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECY 717 (824)
Q Consensus 648 -------~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~y 717 (824)
-+++.++.|+.+ ..+.+||+.+.+-...-..... .....+.+ ++. +++.|+.++ .+.+|
T Consensus 250 v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~dg-----~i~vw 318 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQLPSKFT-CSCNSLTVDGNNANYIYAGYENG-----MLAQW 318 (420)
T ss_dssp CCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEECCTTS-SCEEEEEECSSCTTEEEEEETTS-----EEEEE
T ss_pred ccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEcccccC-CCceeEEEeCCCCCEEEEEeCCC-----eEEEE
Confidence 156777777754 4588999877653222111111 11222233 444 788887665 68899
Q ss_pred ECCCCc
Q psy17309 718 DEKTDE 723 (824)
Q Consensus 718 d~~~~~ 723 (824)
|..+..
T Consensus 319 d~~~~~ 324 (420)
T 3vl1_A 319 DLRSPE 324 (420)
T ss_dssp ETTCTT
T ss_pred EcCCCc
Confidence 988753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.89 Score=53.76 Aligned_cols=210 Identities=8% Similarity=0.052 Sum_probs=118.7
Q ss_pred ceEEEEECCCCcEEEcccCCCCCC-CceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccC----CCCcc-
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGP-RAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM----NFKRC- 547 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~r~- 547 (824)
..+..||+.++++..+.......+ ..-.+++.. ++.|++... +.+++||+.+++|...... ..+..
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCce
Confidence 458899999988877543211111 122233332 466766432 3489999999999877543 11111
Q ss_pred eEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC---CCcccCceEEE-EE--CCEEEEEcccCCCCcCCce
Q psy17309 548 YVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP---MNVERSDASAT-TL--QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 548 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~v 620 (824)
-.+++. -+|.|++... .-+.+||+.++++ .... .+........+ .. +|.|++... .-+
T Consensus 500 i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl 564 (795)
T 4a2l_A 500 ITTLFRDSHKRLWIGGE-------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGF 564 (795)
T ss_dssp EEEEEECTTCCEEEEES-------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCE
T ss_pred EEEEEECCCCCEEEEeC-------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCc
Confidence 122222 2567887542 3488999998888 4431 11111111122 22 577887432 248
Q ss_pred EEEeCCCCeEEEcC---CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECC---CCCCCCcce-EE
Q psy17309 621 EVYDPECNQWTLIE---PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP---DMYNPRSNF-AI 692 (824)
Q Consensus 621 ~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~-~~ 692 (824)
.+||+.+++++... .+|.... .+++.- +|.||+.+. +.+.+||+++.+++... .++...... ++
T Consensus 565 ~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~ 636 (795)
T 4a2l_A 565 YCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDGLQSNQFNTASY 636 (795)
T ss_dssp EEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEE
T ss_pred eeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCCccccCccCce
Confidence 89999999988764 3443322 233332 578888763 46889999999887663 344433322 23
Q ss_pred EEE-CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 693 EVI-DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 693 ~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+.. +|.||+ ||.+ -+..|||+.
T Consensus 637 ~~~~~G~l~~-g~~~------Gl~~~~p~~ 659 (795)
T 4a2l_A 637 CRTSVGQMYF-GGIN------GITTFRPEL 659 (795)
T ss_dssp EECTTSCEEE-EETT------EEEEECGGG
T ss_pred eECCCCeEEE-ecCC------ceEEEcHHH
Confidence 333 566665 4443 356677754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.02 E-value=1.5 Score=44.16 Aligned_cols=207 Identities=8% Similarity=-0.012 Sum_probs=109.5
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCc--EEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCc-
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADR--WVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKV- 535 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~- 535 (824)
+.+++.|. ....+..+|+++.+ |.. .. ......+.+... ++.+++.+. +.++.||+ +++
T Consensus 5 ~~~lv~~~-----~~~~v~~~d~~tG~~~w~~--~~--~~~~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~ 67 (276)
T 3no2_A 5 QHLLVGGS-----GWNKIAIINKDTKEIVWEY--PL--EKGWECNSVAATKAGEILFSYS-------KGAKMITR-DGRE 67 (276)
T ss_dssp CEEEEECT-----TCSEEEEEETTTTEEEEEE--EC--CTTCCCCEEEECTTSCEEEECB-------SEEEEECT-TSCE
T ss_pred CcEEEeeC-----CCCEEEEEECCCCeEEEEe--CC--CccCCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCE
Confidence 45566654 23678899987775 554 11 111122344443 777877432 56999999 554
Q ss_pred -eEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCc-EEee--cCCCc--ccCceEEEEECCEEEEE
Q psy17309 536 -WKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ-WSLI--APMNV--ERSDASATTLQGKIYIT 608 (824)
Q Consensus 536 -W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~--~~~p~--~r~~~~~~~~~~~lyv~ 608 (824)
|+.-.+ .....+++... +|.+++..+.. ...++.+|+..+. |+.. ...+. ..........+|.+++.
T Consensus 68 ~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 68 LWNIAAP--AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEEEECC--TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEEEcCC--CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 764332 11122333333 66776664421 2467888885542 4432 11111 11122223346666665
Q ss_pred cccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCC--EEECC-CC
Q psy17309 609 GGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVP-DM 683 (824)
Q Consensus 609 GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~-~~ 683 (824)
... ...+.+||++-. .|+.-.+. ..+++... ++.+++.+..+ ..+..+|+++.+ |+.-. .+
T Consensus 142 ~~~-----~~~v~~~d~~G~~~w~~~~~~----~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 142 LFA-----TSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp ETT-----TTEEEEECTTSCEEEEEECSS----CCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEEGGGS
T ss_pred ecC-----CCEEEEECCCCCEEEEEECCC----CccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEecCCCC
Confidence 432 256899999732 37654321 12233434 68888877642 469999999654 66542 22
Q ss_pred CCCCc--ceEEEEE-CCEEEEEc
Q psy17309 684 YNPRS--NFAIEVI-DDMIFAIG 703 (824)
Q Consensus 684 p~~r~--~~~~~~~-~~~i~v~G 703 (824)
+..+. -.+++.. ++.+|+..
T Consensus 208 ~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp BSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCccccccccceEcCCCCEEEEe
Confidence 22222 1223333 88999887
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.11 Score=54.80 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=96.1
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++..++.|+.+ ..+..||..+++-...-..... .-.+++.. + +.+++.||.+ ..+.+||..+.+-..
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKPAT 218 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSCBC
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccC-----CceEEEECCCCceee
Confidence 66777778755 3588899988764322111111 11223332 3 3577777754 357888887765322
Q ss_pred ecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CC-EEEEEecCC
Q psy17309 586 IAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HE-CIYVIGGFN 659 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~ 659 (824)
.............+.. ++.+++.|+.+ ..+..||..+.+-. ..+........++.+ ++ ++++.|+.+
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSA--QTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGC--EEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEe--EEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 2222222222223333 45677777755 35788888765411 111212222233333 33 566667654
Q ss_pred CCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE--ECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
..|.+||..+.+-... +.....-.+++. .++++++.||.++ .|.+||..+
T Consensus 292 -----~~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg-----~v~iW~~~~ 343 (357)
T 4g56_B 292 -----CTVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTTVGWDH-----KVLHHHLPS 343 (357)
T ss_dssp -----SCEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTS-----CEEEEECC-
T ss_pred -----CEEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEEEcCCC-----eEEEEECCC
Confidence 4688899887654332 111111122222 2678888888776 467777644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.53 Score=47.93 Aligned_cols=196 Identities=13% Similarity=0.248 Sum_probs=96.9
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--C--CEEEEEecccCCCCCCeEEEEeCCCCc-E
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--Q--DVIYAMGGYNGQRRQNSVEKYNYTENQ-W 583 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~t~~-W 583 (824)
+.+++.|+.+ ..+..||..+++|..+..+.........+.. + +.+++.|+.+ ..+..||..+.. +
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTT 136 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCB
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCce
Confidence 5677777755 4688899988877554433222222222222 2 5677777754 457777776542 2
Q ss_pred EeecCCCcccCceEEEEE---------------CCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCCCCCCcceEEE
Q psy17309 584 SLIAPMNVERSDASATTL---------------QGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPMRHRRSGVSCI 646 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~---------------~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~ 646 (824)
.... +.........+.. ++++++.||.++ .+..||..+. .|.....+.........+
T Consensus 137 ~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 137 SPII-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp CCEE-EECCSSCEEEEEECCCC------------CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred eeee-eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEE
Confidence 1100 0000001111111 245777777653 5667776543 355444443323333333
Q ss_pred EE--C---CEEEEEecCCCCCccceEEEEeCCC--CCEEE--CCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEE
Q psy17309 647 AY--H---ECIYVIGGFNGMSRMCNGEKYNPVT--KTWSQ--VPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVEC 716 (824)
Q Consensus 647 ~~--~---~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~--~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~ 716 (824)
.+ + +.+++.|+.+ ..+.++|+.+ ..|.. +........-.+++. .++++++.||.++ .+.+
T Consensus 211 ~~sp~~~~~~~las~s~D-----~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-----~v~l 280 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQD-----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-----KVTL 280 (297)
T ss_dssp EECCCCSSSEEEEEEETT-----SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-----CEEE
T ss_pred EECCCCCCceEEEEEECC-----CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-----cEEE
Confidence 33 2 3677777754 3566777654 33543 210111111112221 2678888888765 3566
Q ss_pred EECC-CCcEEeccCC
Q psy17309 717 YDEK-TDEWYEATDM 730 (824)
Q Consensus 717 yd~~-~~~W~~~~~~ 730 (824)
|+.. .+.|..+..+
T Consensus 281 w~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 281 WKENLEGKWEPAGEV 295 (297)
T ss_dssp EEECTTSCEEEC---
T ss_pred EEECCCCcEEecccc
Confidence 6654 4678877544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.023 Score=60.36 Aligned_cols=190 Identities=10% Similarity=0.096 Sum_probs=96.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCc-EE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQ-WS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~ 584 (824)
++.+++.|+.+ ..+..||..++.|..+..+.........+.. ++..++.|+.+ ..+.+||..+.. |.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTWK 91 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CCC
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCcee
Confidence 35556666543 4577888888888877766543333233333 56777777754 458888888776 54
Q ss_pred eecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCC-CCcceEEEEE--CCEEEEEecC
Q psy17309 585 LIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRH-RRSGVSCIAY--HECIYVIGGF 658 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~ 658 (824)
....+.........+.+ ++++++.|+.+ ..+..||..+.+ |.....+.. .......+.+ ++++++.|+.
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 44333222222223332 56677777754 357788877664 333332222 1222223333 5777788876
Q ss_pred CCCCccceEEEEeCCCCCE----------------EECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 659 NGMSRMCNGEKYNPVTKTW----------------SQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 659 ~~~~~~~~v~~yd~~~~~W----------------~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+ ..+..||..+... ..+..+ ........+.+ ++++++.|+.++ .+.+||..
T Consensus 167 d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~ 235 (377)
T 3dwl_C 167 D-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPS 235 (377)
T ss_dssp S-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEEC
T ss_pred C-----CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECC
Confidence 4 4577788754321 111122 11111222333 677888887655 57778877
Q ss_pred CCc
Q psy17309 721 TDE 723 (824)
Q Consensus 721 ~~~ 723 (824)
+.+
T Consensus 236 ~~~ 238 (377)
T 3dwl_C 236 APE 238 (377)
T ss_dssp STT
T ss_pred CCC
Confidence 654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.3 Score=51.36 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=73.0
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++.++.||+.+. ...++++|..+++ |+.-...+.. ....+.++.+++||+... -..+
T Consensus 66 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 66 PIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 3467999999764 2569999998876 8864433211 111234567889888643 2578
Q ss_pred EEEeCCCCc--EEeecC-CCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 574 EKYNYTENQ--WSLIAP-MNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 574 ~~yd~~t~~--W~~~~~-~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
..+|..|.+ |+.-.. -+. .....+-++.++.+|+-.+.........+..||..|++ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 999998875 876542 111 11222335568988874332111234579999998876 8764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.94 Score=47.46 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=111.9
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
..++.|+. -..+..||..+.+.... ...+. ..-.+++.. ++..++.||.+ ..+..|+.....-...
T Consensus 77 ~~l~s~s~-----Dg~v~vWd~~~~~~~~~--~~~~~-~~v~~~~~sp~g~~lasg~~d-----~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 77 RRIVSSSQ-----DGKVIVWDSFTTNKEHA--VTMPC-TWVMACAYAPSGCAIACGGLD-----NKCSVYPLTFDKNENM 143 (354)
T ss_dssp SEEEEEET-----TSEEEEEETTTCCEEEE--EECSS-SCCCEEEECTTSSEEEEESTT-----SEEEEEECCCCTTCCS
T ss_pred CEEEEEeC-----CCeEEEEECCCCCcceE--EecCC-CCEEEEEECCCCCEEEEeeCC-----CCEEEEEEeccccccc
Confidence 34555553 24677888766654331 11111 111223322 66777788754 3466776653311000
Q ss_pred cc----CCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE----CCEEEEEc
Q psy17309 540 AP----MNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL----QGKIYITG 609 (824)
Q Consensus 540 ~~----~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~G 609 (824)
.. +.........+.. ++..++.|+.+ ..+..+|+.+.+-... +........+..+ ++.+++.|
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 00 0000111112222 44455555533 5688899888764321 1111111112222 35677888
Q ss_pred ccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCC
Q psy17309 610 GFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687 (824)
Q Consensus 610 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (824)
+.+ ..+..||..+.+....- ........++.+ ++..++.|+.+ ..+..||+.+..-...-......
T Consensus 217 s~D-----g~v~~wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~~~~~ 284 (354)
T 2pbi_B 217 GCD-----KKAMVWDMRSGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYSKESII 284 (354)
T ss_dssp ETT-----SCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCC
T ss_pred eCC-----CeEEEEECCCCcEEEEe--cCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCCcc
Confidence 765 46889998887653321 111122233333 57778888764 46788998766432221111111
Q ss_pred cceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 688 SNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 688 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~-----~i~vwd~~~~~ 317 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDY-----TINVWDVLKGS 317 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCS
T ss_pred cceeEEEEeCCCCEEEEEECCC-----cEEEEECCCCc
Confidence 22223333 678888887655 58889986653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.21 Score=52.44 Aligned_cols=215 Identities=10% Similarity=0.076 Sum_probs=105.5
Q ss_pred ceEEEEECCCCcEEEcccCCC-CCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDP-MGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VST 551 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~ 551 (824)
..|..||..+++-........ .....-.+++.. ++..++.|+.+ ..+..||..+++-.. .+...... .++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~~~~~~--~~~~h~~~V~~~ 175 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQQVVLS--SYRAHAAQVTCV 175 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE--EECCCSSCEEEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEE--EEcCcCCceEEE
Confidence 457788877654211000000 001112233333 66777788755 358889998875322 22211111 222
Q ss_pred EEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCce-EEEEE--CCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 552 AVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA-SATTL--QGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
+.. +..+++.|+.+ ..+.+||..+.+-...-......... +++.. ++++++.|+.+ ..+..||..
T Consensus 176 ~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~ 245 (344)
T 4gqb_B 176 AASPHKDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTK 245 (344)
T ss_dssp EECSSCTTEEEEEETT-----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESC
T ss_pred EecCCCCCceeeeccc-----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECC
Confidence 222 33577777754 45888998876533221111111112 22222 56788888765 367889987
Q ss_pred CCeEEEcCCCCCCCcceEEEEE--CC-EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE---CCEEE
Q psy17309 627 CNQWTLIEPMRHRRSGVSCIAY--HE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI---DDMIF 700 (824)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~ 700 (824)
+.+- +..+........++.+ ++ ++++.|+.+ ..|.+||..+.+-..... . ......+.+ +..++
T Consensus 246 ~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-----~~i~vwd~~~~~~~~~~~--H-~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 246 STSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSED-----CSLAVLDSSLSELFRSQA--H-RDFVRDATWSPLNHSLL 315 (344)
T ss_dssp C--C--CEEEECCSSCEEEEEECSSSSCCEEEEETT-----SCEEEECTTCCEEEEECC--C-SSCEEEEEECSSSTTEE
T ss_pred CCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCcEEEEcC--C-CCCEEEEEEeCCCCeEE
Confidence 6541 2122222222233333 34 566667654 467889987765333211 1 111222333 34678
Q ss_pred EEccCCCCceeeEEEEEECCC
Q psy17309 701 AIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 701 v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+.||.++ .|.+|+..+
T Consensus 316 as~s~D~-----~v~~w~v~~ 331 (344)
T 4gqb_B 316 TTVGWDH-----QVVHHVVPT 331 (344)
T ss_dssp EEEETTS-----CEEEEECCC
T ss_pred EEEcCCC-----eEEEEECCC
Confidence 8888776 466666554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.36 Score=51.97 Aligned_cols=221 Identities=8% Similarity=0.058 Sum_probs=110.3
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
.+++.|+. ...+..||..+.+.... ... ....-.+++.. ++.+++.||.++ .+..||..+.+- +
T Consensus 121 ~~l~s~s~-----Dg~i~vwd~~~~~~~~~--l~~-h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~--~ 185 (410)
T 1vyh_C 121 SVMVSASE-----DATIKVWDYETGDFERT--LKG-HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFEC--I 185 (410)
T ss_dssp SEEEEEES-----SSCEEEEETTTCCCCEE--ECC-CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCE--E
T ss_pred CEEEEEeC-----CCeEEEEECCCCcEEEE--Eec-cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCce--e
Confidence 34555543 23577888776653221 000 11112233333 567778887653 467788776542 2
Q ss_pred ccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCC
Q psy17309 540 APMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHN 615 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~ 615 (824)
..+.........+.+ ++..++.||.+ ..+..||..+..-... +.........+.. ++.+++.|+.+
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D--- 255 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND--- 255 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC---
Confidence 222222222222222 56667777754 5688899887754221 1111111222222 56777777765
Q ss_pred cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE----------------------CCEEEEEecCCCCCccceEEEEeCC
Q psy17309 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY----------------------HECIYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 616 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----------------------~~~iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
..+..||..+...... +........++.+ .+.+++.|+.+ ..+.+||..
T Consensus 256 --~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~ 326 (410)
T 1vyh_C 256 --QTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVS 326 (410)
T ss_dssp --SCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETT
T ss_pred --CeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECC
Confidence 3577888777654321 1111111111111 25567777654 468889987
Q ss_pred CCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 674 TKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 674 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
+..=.. .+.........+.+ +++.++.||.++ .+.+||..+.
T Consensus 327 ~~~~~~--~~~~h~~~v~~v~~~~~g~~l~s~s~D~-----~i~vwd~~~~ 370 (410)
T 1vyh_C 327 TGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDK-----TLRVWDYKNK 370 (410)
T ss_dssp TTEEEE--EEECCSSCEEEEEECSSSSCEEEEETTT-----EEEEECCTTS
T ss_pred CCceEE--EEECCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 653211 11111111122223 677777887665 6788887654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=3.3 Score=46.66 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEC-CCC--cEEEcccCCCCC-----C---CceeEEEEECCEEEEEeecCCCccc
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDT-RAD--RWVKIDQVDPMG-----P---RAYHGTAVIGYNIYVIGGFDGNEYY 523 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~~-----~---r~~~~~~~~~~~lyv~GG~~~~~~~ 523 (824)
|-...+.||+.... ...++++|. .+. .|..- ...+. . ....+.++.++.||+... .
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------d 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHK--PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------N 124 (571)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEEC--CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------T
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEc--CCCCccccccccccccccccEEECCEEEEEeC------C
Confidence 33345666665431 346899998 665 48762 22110 0 112234567899988743 2
Q ss_pred ceEEEEECCCCc--eEEeccC-CCC-cceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEee
Q psy17309 524 NSCRCFNAVTKV--WKEIAPM-NFK-RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLI 586 (824)
Q Consensus 524 ~~~~~yd~~~~~--W~~~~~~-~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~ 586 (824)
..++++|..+++ |+.-..- +.. ....+-++.++.||+..+.........++.||+.|.+ |+.-
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 569999998876 8743221 110 1112234568888876432111123679999998765 8653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=1.3 Score=46.02 Aligned_cols=185 Identities=15% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCc--EE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~ 584 (824)
++.+++.|+.+ ..+..||..+.+-...-+..... -.+++. -++..++.||.+ ..+.+||..+.. ..
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLRSSW-VMTCAYAPSGNYVACGGLD-----NICSIYNLKTREGNVR 134 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSSC-EEEEEECTTSSEEEEEETT-----CEEEEEETTTCSBSCE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEeecCCcc-EEEEEECCCCCEEEEEeCC-----CeEEEEECccCCCcce
Confidence 45566777754 45888888776533221211111 122222 256777778754 567888877643 11
Q ss_pred eecCCCcccCceE-EEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 585 LIAPMNVERSDAS-ATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 585 ~~~~~p~~r~~~~-~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
....+........ +.. -++. ++.|+.+ ..+..||..+.+-... +........++.+ ++.+++.|+.+
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d- 205 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD- 205 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC-
Confidence 1111111111111 222 2555 4555544 4688999988764322 2211122222333 67788888864
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+..||+.+..-... +.........+.+ +++.++.|+.++ .+.+||..+.+
T Consensus 206 ----~~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~ 259 (340)
T 1got_B 206 ----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQ 259 (340)
T ss_dssp ----SCEEEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE
T ss_pred ----CcEEEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCc
Confidence 4678899876643221 1111111222233 678888888765 57889987764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.82 E-value=0.53 Score=48.06 Aligned_cols=220 Identities=9% Similarity=-0.016 Sum_probs=113.7
Q ss_pred ceEEEEECCCCcEEEcccCCCC-CCCceeEEEEE-C-CEEEEEeecCCCcccceEEEEECCCCceEEe-ccCCCC---cc
Q psy17309 475 DFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI-G-YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI-APMNFK---RC 547 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~-~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~---r~ 547 (824)
..+..||+.+.++..+..+... ....-.+++.. + +.+|+.... +.+++||+. ++...+ ...... ..
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 118 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQG 118 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBC
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccC
Confidence 4688999988888764321000 11222344443 4 788887641 368999998 777665 332111 11
Q ss_pred eEEEEE-ECCEEEEEecccC----------CCCCCeEEEEeCCCCcEEeec-CCCcccCceEEEEE-----CC-EEEEEc
Q psy17309 548 YVSTAV-HQDVIYAMGGYNG----------QRRQNSVEKYNYTENQWSLIA-PMNVERSDASATTL-----QG-KIYITG 609 (824)
Q Consensus 548 ~~~~~~-~~~~iyv~GG~~~----------~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-----~~-~lyv~G 609 (824)
-..++. -++.+|+...... ......++++|+. .+...+. .+..+ .+.+.. ++ .||+..
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEEEEE
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEEEEE
Confidence 223333 3678888754220 1123578999987 5554432 11111 233333 34 577764
Q ss_pred ccCCCCcCCceEEEeCC-CCeEEE---cCCCCCCC-cceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 610 GFNGHNCLNSCEVYDPE-CNQWTL---IEPMRHRR-SGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 610 G~~~~~~~~~v~~yd~~-~~~W~~---~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
.. ...+.+||+. +++... ...++... .....+.+ +|.||+.... ...+.+||+.+.+-...-.
T Consensus 195 ~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 195 TP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp TT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEE
T ss_pred CC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEe
Confidence 32 2568888875 444322 11222221 12222333 5889987532 2478999998543211111
Q ss_pred CCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEECCCC
Q psy17309 683 MYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 683 ~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+. .....+.+ +++ ||+.+..+ ..+++|++++.
T Consensus 265 ~~~--~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~ 300 (314)
T 1pjx_A 265 CPF--EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRN 300 (314)
T ss_dssp CSS--SCEEEEEECTTSSEEEEEETTT-----TEEEEEECSSC
T ss_pred CCC--CCceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCC
Confidence 221 12223333 454 77765432 26888998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.25 Score=50.99 Aligned_cols=232 Identities=7% Similarity=-0.000 Sum_probs=117.3
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCce-
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVW- 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W- 536 (824)
+.+++..+. ...+..+|+.+.+....-... ....+++.. +..+|+.+..+ ..++.+|+.+++.
T Consensus 10 ~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 10 NFGIVVEQH-----LRRISFFSTDTLEILNQITLG----YDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPK 75 (331)
T ss_dssp CEEEEEEGG-----GTEEEEEETTTCCEEEEEECC----CCEEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCE
T ss_pred CEEEEEecC-----CCeEEEEeCcccceeeeEEcc----CCcceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCcee
Confidence 455555542 347889999998876532211 112233333 44577776522 4799999998874
Q ss_pred E-EeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEccc
Q psy17309 537 K-EIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGF 611 (824)
Q Consensus 537 ~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~ 611 (824)
. .+.....++ ++++.. +..+| .+... .....+.++|+.+.+.... ++.....+.++.. ++ .+|+.+..
T Consensus 76 ~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 76 VVAIQEGQSSM--ADVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp EEEEEECSSCC--CCEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSCEEEEEET
T ss_pred EEecccCCCCc--cceEECCCCCEEE-EecCC--CCcccEEEEECCCCCeEEE--EECCCCccceEECCCCCEEEEEecC
Confidence 2 222222222 212322 34566 33211 1123899999998875443 2222222444444 44 57777543
Q ss_pred CCCCcCCc-eEEEeCCCCe-EEEc--CCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEeCCCCCE-EECCCCC
Q psy17309 612 NGHNCLNS-CEVYDPECNQ-WTLI--EPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCNGEKYNPVTKTW-SQVPDMY 684 (824)
Q Consensus 612 ~~~~~~~~-v~~yd~~~~~-W~~~--~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p 684 (824)
+ .. +..|+...+. .... ..++.......++.. +++ +|+.+.. ...+.+||+.+.+. ..+..++
T Consensus 149 ~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 149 S-----ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp T-----TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEEE
T ss_pred C-----CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeecc
Confidence 2 34 6666654322 1111 111212222223322 454 7777643 25789999987664 1121122
Q ss_pred CCCcceEEEEE-CCE-EEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 685 NPRSNFAIEVI-DDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 685 ~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.......++.. +++ ||+.... .+.+.+||+++.+.+.+
T Consensus 219 ~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 219 TNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp CSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeee
Confidence 22222223332 454 6766542 23588999999887544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.76 Score=47.82 Aligned_cols=235 Identities=10% Similarity=0.037 Sum_probs=113.4
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..++.|+. ...+..||..+.+-... ... ....-.+++.. ++..++.|+.+ ..+..||..+.+-..
T Consensus 44 ~~~l~~~~~-----dg~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 44 GDLLFSCSK-----DSSASVWYSLNGERLGT--LDG-HTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVA 110 (369)
T ss_dssp SCEEEEEES-----SSCEEEEETTTCCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEE
T ss_pred CCEEEEEeC-----CCEEEEEeCCCchhhhh--hhh-cCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 344555543 23578888877665431 111 11122233333 56667777654 468999998876543
Q ss_pred eccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCc----EEeecCCC-----ccc--CceEEEEE--CCE
Q psy17309 539 IAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ----WSLIAPMN-----VER--SDASATTL--QGK 604 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~----W~~~~~~p-----~~r--~~~~~~~~--~~~ 604 (824)
.-..+. .-.+++.. ++..++.++.+.......+..||..+.. +......+ ... .......+ +++
T Consensus 111 ~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 111 TWKSPV--PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEECSS--CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EeecCC--CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 332221 12223222 5566666654322233567777766542 22211111 000 02222222 566
Q ss_pred EEEEcccCCCCcCCceEEEeCCC-CeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 605 IYITGGFNGHNCLNSCEVYDPEC-NQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 605 lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
.++.|+.+ ..+..||..+ ..-... +.........+.+ ++..++.|+.+ ..+.+||..+.+-...-
T Consensus 189 ~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 189 YIIAGHKD-----GKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEEEEETT-----SEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEE
T ss_pred EEEEEcCC-----CEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCCceeeee
Confidence 66777654 4688999887 332211 1111222223333 67777777653 46889998876543322
Q ss_pred CCCCCCcceEEE-EECCEEEEEccCCCCc---------eeeEEEEEECCCCc
Q psy17309 682 DMYNPRSNFAIE-VIDDMIFAIGGFNGVT---------TIYHVECYDEKTDE 723 (824)
Q Consensus 682 ~~p~~r~~~~~~-~~~~~i~v~GG~~~~~---------~~~~v~~yd~~~~~ 723 (824)
..+ .....++ .-+++.+++|+.++.. ....+.+||..+.+
T Consensus 257 ~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 257 ETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp ECS--SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred cCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 111 1111222 2255666666544321 11257788876653
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0063 Score=56.48 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=52.9
Q ss_pred ccceeEEeeecccchhhhheeecccc-------------------------eecCHhhHHHHHHHHhhcChHhHHHHHHH
Q psy17309 244 RQNSVEKYNYTENQDKIEEKKLFERK-------------------------LHITEDNVASLLLATDFFCMSKAQDLCCD 298 (824)
Q Consensus 244 ~~~~i~l~~~~~~~~~~ll~~~Yt~~-------------------------l~l~~~~v~~ll~~a~~~~i~~l~~~c~~ 298 (824)
....|.+++++..+++.+++|++.-. +.+..+.+.+|+.||++|+|..|.+.||+
T Consensus 48 ~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~ 127 (169)
T 3v7d_A 48 DEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCK 127 (169)
T ss_dssp --CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34789999999999999999985432 35677889999999999999999999999
Q ss_pred HHhhcCCcchH
Q psy17309 299 FIKRLTTPRNC 309 (824)
Q Consensus 299 ~l~~~l~~~N~ 309 (824)
.+...+...+.
T Consensus 128 ~vA~~ikgktp 138 (169)
T 3v7d_A 128 VVAEMIRGRSP 138 (169)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHcCCCH
Confidence 88765554443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.8 Score=51.90 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=71.5
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEEC-CCCc--eEEeccCCC-----Cc---ceEEEEE--ECCE----EEEEeccc
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNA-VTKV--WKEIAPMNF-----KR---CYVSTAV--HQDV----IYAMGGYN 565 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~-~~~~--W~~~~~~~~-----~r---~~~~~~~--~~~~----iyv~GG~~ 565 (824)
+-++.++.||+.+.. ...++++|. .+++ |+.-...+. .+ ...+.++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 345669999998652 246999999 7776 886543321 11 1123445 5777 887543
Q ss_pred CCCCCCeEEEEeCCCCc--EEeecCCCcc--cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcC
Q psy17309 566 GQRRQNSVEKYNYTENQ--WSLIAPMNVE--RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIE 634 (824)
Q Consensus 566 ~~~~~~~~~~yd~~t~~--W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 634 (824)
...+..+|..|.+ |+.-..-+.. ....+-++.+++||+-.+.........+..||.++++ |+.-.
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ----DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 2578999998875 8753221111 1122234568888874432111124578999998875 87653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.26 Score=50.90 Aligned_cols=241 Identities=17% Similarity=0.183 Sum_probs=119.3
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE---CCEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI---GYNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
+..++.|+. ...+..||..+.+...+.... .....-.+++.. ++.+++.|+.+ ..+..||..+.+|
T Consensus 25 g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 25 GTRLATCSS-----DRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWREENGTW 93 (316)
T ss_dssp GCEEEEEET-----TTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEECCSSSCC
T ss_pred CCEEEEEeC-----CCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEECCCCcc
Confidence 345566653 246778887765432211100 011112233332 25677777755 4588899988877
Q ss_pred EEeccCCCCcce-EEEEEE-C--CEEEEEecccCCCCCCeEEEEeCCCC-cEEeecCCCcccCceEEEEE----------
Q psy17309 537 KEIAPMNFKRCY-VSTAVH-Q--DVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIAPMNVERSDASATTL---------- 601 (824)
Q Consensus 537 ~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~---------- 601 (824)
..+..+...... .+++.. + +.+++.|+.+ ..+..+|..+. .|.....+.........+..
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 654433221111 123322 2 5677777754 34677777664 56543222111111111111
Q ss_pred ---------CCEEEEEcccCCCCcCCceEEEeCCC-CeEEEcCCCCCCCcceEEEEE--C----CEEEEEecCCCCCccc
Q psy17309 602 ---------QGKIYITGGFNGHNCLNSCEVYDPEC-NQWTLIEPMRHRRSGVSCIAY--H----ECIYVIGGFNGMSRMC 665 (824)
Q Consensus 602 ---------~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~ 665 (824)
.+++++.||.+ ..+..||..+ ..|..+..+.........+.+ + +.+++.|+.+ .
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-----~ 238 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCD-----NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-----G 238 (316)
T ss_dssp --CCSCCCCCCCBEECCBTT-----SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-----C
T ss_pred ccccccCccccceEEEecCC-----CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC-----C
Confidence 13466667655 3566777753 457666555433333333333 2 2667777754 4
Q ss_pred eEEEEeCCC---CCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECC-CCcEEeccCCCC
Q psy17309 666 NGEKYNPVT---KTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK-TDEWYEATDMNI 732 (824)
Q Consensus 666 ~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~ 732 (824)
.+.++|..+ ..|... .+.........+.+ ++++++.||.++ .+.+|+.. ...|..+..+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~g~~las~~~D~-----~v~lw~~~~~g~~~~~~~~~~ 305 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPK-LLHKFNDVVWHVSWSITANILAVSGGDN-----KVTLWKESVDGQWVCISDVNK 305 (316)
T ss_dssp EEEEEECSSTTCCCCBCC-EEEECSSCEEEEEECTTTCCEEEEESSS-----CEEEEEECTTSCEEEEEECC-
T ss_pred eEEEEEccCccccchhhh-hhhcCCCcEEEEEEcCCCCEEEEEcCCC-----eEEEEEECCCCcEEEeeeccC
Confidence 677787765 233211 00000111112222 678888888765 46667754 467887765543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.46 Score=50.26 Aligned_cols=182 Identities=4% Similarity=-0.018 Sum_probs=101.6
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
.+++.|+.+ ..+..||..+.+........ ....-.+++.. ++.+++.|+.+ ..+..+|..+.....+
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~ 156 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVF 156 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEE
Confidence 567777654 45889999988776554432 22222334444 34677777643 5688899988776655
Q ss_pred cCCCcccCce-EEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCE-EEEEecCCCC
Q psy17309 587 APMNVERSDA-SATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HEC-IYVIGGFNGM 661 (824)
Q Consensus 587 ~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~ 661 (824)
.......... +++.. ++..++.|+.+ ..+..||.....-..+.. ......++.+ ++. +++.|+.+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d-- 226 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMATSSVD-- 226 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEEEETT--
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEEEeCC--
Confidence 4332211212 22222 56677777755 468889985544333322 1222223333 344 77777754
Q ss_pred CccceEEEEeCCC----CCEEECCCCCCCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 662 SRMCNGEKYNPVT----KTWSQVPDMYNPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 662 ~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
..+.+||+.+ ....... .... ....+.+ +++.++.|+.++ .+.+||..+.
T Consensus 227 ---~~i~iwd~~~~~~~~~~~~~~--~~~~-~v~~~~~s~~~~~~l~~~~~d~-----~i~iwd~~~~ 283 (383)
T 3ei3_B 227 ---ATVKLWDLRNIKDKNSYIAEM--PHEK-PVNAAYFNPTDSTKLLTTDQRN-----EIRVYSSYDW 283 (383)
T ss_dssp ---SEEEEEEGGGCCSTTCEEEEE--ECSS-CEEEEEECTTTSCEEEEEESSS-----EEEEEETTBT
T ss_pred ---CEEEEEeCCCCCcccceEEEe--cCCC-ceEEEEEcCCCCCEEEEEcCCC-----cEEEEECCCC
Confidence 4688898876 3222211 1111 1222222 567888887654 6888998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.15 Score=60.07 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=106.4
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--C--CEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--Q--DVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
+..++.||.+ ..+..||..++++..+..+.........+.. + +..++.|+.+ ..+.+||..+++|.
T Consensus 21 g~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~ 90 (753)
T 3jro_A 21 GKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWS 90 (753)
T ss_dssp SCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEE
T ss_pred CCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCccc
Confidence 4556667654 4588888887777766655433333333333 3 6777778754 45889999999887
Q ss_pred eecCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE------------
Q psy17309 585 LIAPMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY------------ 648 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~------------ 648 (824)
.+..+.........+.. + +.+++.|+.+ ..+..||..+..-.....+........++..
T Consensus 91 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 91 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred ccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 76555443333334433 3 6778888765 3677888776521111000111111122222
Q ss_pred ---CCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCCCCcceEEEEE--C---CEEEEEccCCCCceeeEEEEEE
Q psy17309 649 ---HECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYNPRSNFAIEVI--D---DMIFAIGGFNGVTTIYHVECYD 718 (824)
Q Consensus 649 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~i~v~GG~~~~~~~~~v~~yd 718 (824)
++.+++.|+.+ ..+..||..+. .+..+..+.........+.+ + +++++.||.++ .+.+||
T Consensus 166 ~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----~I~iwd 235 (753)
T 3jro_A 166 GTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWT 235 (753)
T ss_dssp -CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----CEEEEE
T ss_pred cCCCCCEEEEEECC-----CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----EEEEec
Confidence 35677777754 35777777544 34443333222222233333 4 78999998765 477888
Q ss_pred CCCC
Q psy17309 719 EKTD 722 (824)
Q Consensus 719 ~~~~ 722 (824)
+.+.
T Consensus 236 ~~~~ 239 (753)
T 3jro_A 236 QDNE 239 (753)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 7764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=95.65 E-value=0.3 Score=49.87 Aligned_cols=196 Identities=10% Similarity=0.045 Sum_probs=102.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+|++.-. ...+++||+.+++...... + ..-.+++.. ++.+|+..+ +.+.+||+.+.+++.+
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVL 88 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEE
Confidence 3677777642 2578999999887654332 1 111233333 567666532 5799999999998876
Q ss_pred cCCCc----ccCceEEEEECCEEEEEcccCCC------CcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEE-CC-EEE
Q psy17309 587 APMNV----ERSDASATTLQGKIYITGGFNGH------NCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY-HE-CIY 653 (824)
Q Consensus 587 ~~~p~----~r~~~~~~~~~~~lyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~iy 653 (824)
...+. .+....++.-+|++|+..-.... .....++++|+.. +...+. .+. ...+.+.. ++ .+|
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~---~pngi~~spdg~~ly 164 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD---ISNGLDWSLDHKIFY 164 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES---BEEEEEECTTSCEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc---cccceEEcCCCCEEE
Confidence 54332 12222222226788874311110 1234688888753 333321 111 11223332 34 588
Q ss_pred EEecCCCCCccceEEEEeC--CCCCEEE---CCCCCCCCcce-EEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 654 VIGGFNGMSRMCNGEKYNP--VTKTWSQ---VPDMYNPRSNF-AIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~--~~~~W~~---~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
+.... ...+++||. .+..... +..++...... +++. -++.||+....+ ..|.+||+++.+...
T Consensus 165 v~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 165 YIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEEE
T ss_pred EecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEEE
Confidence 87653 356888875 4444321 11121111112 2332 267888875322 258999999876654
Q ss_pred ccCCCC
Q psy17309 727 ATDMNI 732 (824)
Q Consensus 727 ~~~~p~ 732 (824)
.-.+|.
T Consensus 235 ~i~~p~ 240 (297)
T 3g4e_A 235 TVKLPV 240 (297)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 434443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.44 Score=48.13 Aligned_cols=185 Identities=11% Similarity=-0.012 Sum_probs=100.4
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC--cEE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWS 584 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~ 584 (824)
+.+++.|..+ ..+..+|+++++ |+.-..-. .......+.-+|.+++.+. +.+..||+ +. .|+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYS-------KGAKMITR-DGRELWN 70 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECB-------SEEEEECT-TSCEEEE
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCEEEE
Confidence 5666666432 678899998876 66433211 1222333334788888432 56899999 44 376
Q ss_pred eecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcC--CCCCC--CcceEEEEECCEEEEEecC
Q psy17309 585 LIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIE--PMRHR--RSGVSCIAYHECIYVIGGF 658 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~--~~p~~--r~~~~~~~~~~~iyv~GG~ 658 (824)
.-.+ .....+++... +|++++..+.+ ...+..+|++... |+.-- ..+.+ .........+|.+++....
T Consensus 71 ~~~~--~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 71 IAAP--AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp EECC--TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred EcCC--CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 5432 11122333333 67777664421 2467888885442 44321 11111 1112233346777766543
Q ss_pred CCCCccceEEEEeCCCC-CEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCC--cEEec
Q psy17309 659 NGMSRMCNGEKYNPVTK-TWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTD--EWYEA 727 (824)
Q Consensus 659 ~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 727 (824)
...+.+||++.+ .|+.-... ..+++... ++.+++.+..++ .+..+|+++. .|+.-
T Consensus 145 -----~~~v~~~d~~G~~~w~~~~~~----~~~~~~~~~~g~~~v~~~~~~-----~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 145 -----TSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVACGDAH-----CFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -----TTEEEEECTTSCEEEEEECSS----CCCEEEECTTSCEEEECBTTS-----EEEEECTTTCCEEEEEE
T ss_pred -----CCEEEEECCCCCEEEEEECCC----CccceeEcCCCCEEEEeCCCC-----eEEEEeCcCCcEEEEec
Confidence 257899999733 36654321 12234444 788888876432 6899999965 46553
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.7 Score=46.82 Aligned_cols=186 Identities=10% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++..++.|+.+ ..+..||....... +.... ..-.+++. . ++..++.|+.+ ..+..||..... ..
T Consensus 113 ~~~~l~~~~~d-----~~i~~~d~~~~~~~-~~~~~--~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~ 178 (313)
T 3odt_A 113 QDGVVISGSWD-----KTAKVWKEGSLVYN-LQAHN--ASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDKVI-KT 178 (313)
T ss_dssp ETTEEEEEETT-----SEEEEEETTEEEEE-EECCS--SCEEEEEEEETTTTEEEEEETT-----SCEEEEETTEEE-EE
T ss_pred cCCEEEEEeCC-----CCEEEEcCCcEEEe-cccCC--CceeEEEEccCCCCEEEEEECC-----CCEEEEecCceE-EE
Confidence 45566667644 45778882221111 11111 11122222 2 56677777644 457788833221 11
Q ss_pred ecCCCcccCceEEE-EECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 586 IAPMNVERSDASAT-TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 586 ~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
.... ....-.+++ .-++. ++.|+.+ ..+..||..+.+-... +.........+.+ +++ ++.|+.+
T Consensus 179 ~~~~-~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~d--- 245 (313)
T 3odt_A 179 FSGI-HNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGED--- 245 (313)
T ss_dssp ECSS-CSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEETT---
T ss_pred Eecc-CcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEecC---
Confidence 2211 111122233 23667 6666654 4688899877653221 1111122223333 454 5556543
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEeccC
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATD 729 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (824)
..+..||..+.+-...-..+... -.+++.. +++ ++.|+.++ .+.+||..++++.....
T Consensus 246 --g~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~dg-----~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 246 --RTVRIWSKENGSLKQVITLPAIS-IWSVDCMSNGD-IIVGSSDN-----LVRIFSQEKSRWASEDE 304 (313)
T ss_dssp --SEEEEECTTTCCEEEEEECSSSC-EEEEEECTTSC-EEEEETTS-----CEEEEESCGGGCCC---
T ss_pred --CEEEEEECCCCceeEEEeccCce-EEEEEEccCCC-EEEEeCCC-----cEEEEeCCCCceeehhh
Confidence 57899999887644332222211 1122222 566 55676655 58899999887765533
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=95.54 E-value=0.58 Score=49.61 Aligned_cols=231 Identities=9% Similarity=0.076 Sum_probs=116.8
Q ss_pred EEEEccCCCCCCCceEEEEECCCCc-------EEEcccCCCCCCCceeEEEEE-C----C---EEEEEeecCCCcccceE
Q psy17309 462 LFAIGGWSGGSPTDFVETYDTRADR-------WVKIDQVDPMGPRAYHGTAVI-G----Y---NIYVIGGFDGNEYYNSC 526 (824)
Q Consensus 462 l~~~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~~~r~~~~~~~~-~----~---~lyv~GG~~~~~~~~~~ 526 (824)
+++.|+. ...+..||..+.+ -..+.. ....-.+++.. + + .+++.|+.+ ..+
T Consensus 28 ~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d-----g~i 93 (397)
T 1sq9_A 28 FTVSCSG-----DGYLKVWDNKLLDNENPKDKSYSHFV----HKSGLHHVDVLQAIERDAFELCLVATTSFS-----GDL 93 (397)
T ss_dssp EEEEEET-----TSEEEEEESBCCTTCCGGGGEEEEEC----CTTCEEEEEEEEEEETTTEEEEEEEEEETT-----SCE
T ss_pred eEEEEcC-----CCEEEEEECCCcccccCCCcceEEec----CCCcEEEEEEecccccCCccccEEEEEcCC-----CCE
Confidence 4555543 2468888887765 333221 11122333333 4 6 788888754 358
Q ss_pred EEEECCCCc------eEEeccCCCC---cceEEEEEE-----CCEE-EEEecccCCCCCCeEEEEeCCC------Cc---
Q psy17309 527 RCFNAVTKV------WKEIAPMNFK---RCYVSTAVH-----QDVI-YAMGGYNGQRRQNSVEKYNYTE------NQ--- 582 (824)
Q Consensus 527 ~~yd~~~~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~~yd~~t------~~--- 582 (824)
..||..+.+ +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+..||..+ ..
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTC
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCCccccccccceee
Confidence 888887766 6666544311 222333333 4555 7777754 4577777665 21
Q ss_pred EEeecCC--------CcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-CCC---CcceEEEEE-
Q psy17309 583 WSLIAPM--------NVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RHR---RSGVSCIAY- 648 (824)
Q Consensus 583 W~~~~~~--------p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~---r~~~~~~~~- 648 (824)
|.....+ .....-.+++.. ++ +++.|+.+ ..+..||..+.+-...-.. ... ......+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 2111111 111122233333 56 67777654 4688999887654322111 001 222223333
Q ss_pred -CCEEEEEecCCCCCccceEEEEeCCCCCEEE-CCCCC--C--------CCcceEEEEE--CCEEEEEccCCCCceeeEE
Q psy17309 649 -HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-VPDMY--N--------PRSNFAIEVI--DDMIFAIGGFNGVTTIYHV 714 (824)
Q Consensus 649 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p--~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v 714 (824)
++.+++.|+.++ ....+.+||..+.+-.. +...+ . .......+.+ ++++++.|+.++ .+
T Consensus 243 ~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i 315 (397)
T 1sq9_A 243 PQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KL 315 (397)
T ss_dssp SSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EE
T ss_pred CCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eE
Confidence 577777776421 01478899987664222 11100 0 1112222333 577788887654 68
Q ss_pred EEEECCCCcE
Q psy17309 715 ECYDEKTDEW 724 (824)
Q Consensus 715 ~~yd~~~~~W 724 (824)
.+||..+.+-
T Consensus 316 ~iwd~~~~~~ 325 (397)
T 1sq9_A 316 RFWDVKTKER 325 (397)
T ss_dssp EEEETTTTEE
T ss_pred EEEEcCCCce
Confidence 8999877643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.86 Score=47.09 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=76.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
+.+++.++. ...+..+|+.+.+.... ...+.....+.++.. ++.+|+.+.. ...++.||+.+++-.
T Consensus 11 ~~~~v~~~~-----~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 11 HEYMIVTNY-----PNNLHVVDVASDTVYKS--CVMPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNT 78 (349)
T ss_dssp CEEEEEEET-----TTEEEEEETTTTEEEEE--EECSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred CEEEEEeCC-----CCeEEEEECCCCcEEEE--EecCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEE
Confidence 456666543 35789999998876532 111110012334443 3467777642 256999999988754
Q ss_pred EeccCCC-----CcceEEEEEE-CC-EEEEEeccc---CC---CCCCeEEEEeCCCCcEEe-ecCCCcccCceEEEEE-C
Q psy17309 538 EIAPMNF-----KRCYVSTAVH-QD-VIYAMGGYN---GQ---RRQNSVEKYNYTENQWSL-IAPMNVERSDASATTL-Q 602 (824)
Q Consensus 538 ~~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~~---~~---~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~ 602 (824)
..-..+. ...-..++.. ++ .+|+.+... .. .....+.+||+.+++-.. +...+.++.-.+++.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 3222221 1111223332 44 555544210 00 012579999988743211 1111222222333332 6
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
+++|+.++ ++.++|+.+.+-.
T Consensus 159 g~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 159 GSLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp SCEEEESS--------SEEEECTTTCCEE
T ss_pred CcEEEccC--------cEEEEeCCCCcee
Confidence 67777432 3888888776543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=2.7 Score=43.34 Aligned_cols=226 Identities=10% Similarity=0.021 Sum_probs=123.3
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCC--ceEEeccCC------CC
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTK--VWKEIAPMN------FK 545 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~------~~ 545 (824)
..+..+|+.+.+...... ......-+++++. ++.+|+.... ...+.+||+... .-..+.... ..
T Consensus 69 ~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~ 141 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSG--KNLFYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNH 141 (329)
T ss_dssp CCEEEECTTTCCEEEEEC--TTTCSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTC
T ss_pred CcEEEEECCCCeEEeccC--CCccCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccc
Confidence 368999998777654211 1111223445544 6778887642 256899998765 233332110 01
Q ss_pred -cceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-------CcccC-ceEEEEE-C-CEEEEEcccC
Q psy17309 546 -RCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-------NVERS-DASATTL-Q-GKIYITGGFN 612 (824)
Q Consensus 546 -r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-------p~~r~-~~~~~~~-~-~~lyv~GG~~ 612 (824)
..-..+++. ++.||+..+. ....+.+||+....-..+... +.... -+++++- + +.|||....+
T Consensus 142 ~~~P~~ia~~~~~g~lyv~d~~----~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 142 FCQPTDVAVEPSTGAVFVSDGY----CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp CSSEEEEEECTTTCCEEEEECS----SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred cCCCcEEEEeCCCCeEEEEeCC----CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 122344444 6899999752 136789999665544433211 11112 2334443 4 8999986532
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCC-CCCcceEEEEECCEEEEEecCCC--CCccceEEEEeCCCCCEEEC-CCCCCCCc
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMR-HRRSGVSCIAYHECIYVIGGFNG--MSRMCNGEKYNPVTKTWSQV-PDMYNPRS 688 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~-~~~p~~r~ 688 (824)
+.+.+||+.+++....-..+ ......+.+...+.+|...|..- ......+.++|+.+.+.... ...+....
T Consensus 218 -----~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 218 -----GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD 292 (329)
T ss_dssp -----TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS
T ss_pred -----CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC
Confidence 57999999876654432222 22222334444577777777321 22245789999887765543 22122222
Q ss_pred ceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 689 NFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 689 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
....+++ ++.|||....+. .|.+|+++.
T Consensus 293 ~p~~ia~~~dG~lyvad~~~~-----~I~~~~~~~ 322 (329)
T 3fvz_A 293 MPHDIVASEDGTVYIGDAHTN-----TVWKFTLTE 322 (329)
T ss_dssp SEEEEEECTTSEEEEEESSSC-----CEEEEEEEE
T ss_pred CeeEEEECCCCCEEEEECCCC-----EEEEEeCCc
Confidence 2233333 678999875433 577777643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.49 E-value=2.2 Score=43.45 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=73.8
Q ss_pred CEEEEEeecCCCcccceEEEEECCCC-------ceEEeccCCCCcceE-EEEEE-C--CEEEEEecccCCCCCCeEEEEe
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTK-------VWKEIAPMNFKRCYV-STAVH-Q--DVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~-------~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd 577 (824)
+.+++.|+.+ ..+..||..+. .|..+..+....... +++.. + +.+++.|+.+ ..+..||
T Consensus 71 ~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd 140 (351)
T 3f3f_A 71 GRIIASASYD-----KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYD 140 (351)
T ss_dssp CSEEEEEETT-----SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEE
T ss_pred CCEEEEEcCC-----CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEec
Confidence 6777888765 34777887654 344444333222222 23332 3 6677777743 4688888
Q ss_pred CCCCc----EEee---cCC---C--cccCceEEEEE----CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCc
Q psy17309 578 YTENQ----WSLI---APM---N--VERSDASATTL----QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS 641 (824)
Q Consensus 578 ~~t~~----W~~~---~~~---p--~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 641 (824)
..+.+ |... ..+ + ......+++.. ++.+++.|+.++ .+..++........+..++....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~ 215 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKS 215 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCS
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCCc
Confidence 77654 2211 111 1 11111122221 266777777543 34555566666655544443333
Q ss_pred ceEEEEE--CC----EEEEEecCCCCCccceEEEEeCCC
Q psy17309 642 GVSCIAY--HE----CIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 642 ~~~~~~~--~~----~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
....+.+ ++ .+++.|+.++ .+.+||..+
T Consensus 216 ~i~~~~~~p~~~~~~~~l~s~~~dg-----~i~iwd~~~ 249 (351)
T 3f3f_A 216 LIRSISWAPSIGRWYQLIATGCKDG-----RIRIFKITE 249 (351)
T ss_dssp CEEEEEECCCSSCSSEEEEEEETTS-----CEEEEEEEE
T ss_pred ceeEEEECCCCCCcceEEEEEcCCC-----eEEEEeCCC
Confidence 3333333 33 6788887643 456666543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.29 Score=50.86 Aligned_cols=189 Identities=13% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCC--CceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVT--KVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
++..++.|+.+ ..+..||... ..+..+..+.........+.. ++.+++.|+.+ ..+..+|..+..|
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~ 187 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-----DTVRIWKDYDDDW 187 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCe
Confidence 35566667654 3578888743 345444333322222222222 56777777754 4577788877777
Q ss_pred EeecCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCC------CeEEEcCCCCC--CCcceEEEEECCE
Q psy17309 584 SLIAPMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPEC------NQWTLIEPMRH--RRSGVSCIAYHEC 651 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~p~--~r~~~~~~~~~~~ 651 (824)
+.+..+.........+.+ + +..++.|+.++ .+..||..+ ..|.....++. ...-.+++...+.
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 262 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC
Confidence 665544322222222222 2 44566676553 455565432 24655544443 1222223333455
Q ss_pred EEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCc--ceEEEEE----CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS--NFAIEVI----DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+++.||.+ ..+.+||..+..|..+........ ....+.+ ++++++.||.++ .+.+||.++
T Consensus 263 ~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGAD-----GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-----IVNFWSLEK 328 (330)
T ss_dssp CEEEEETT-----SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-----EEEEEEC--
T ss_pred EEEEEeCC-----CEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-----cEEEEEecc
Confidence 66677754 467788888888865532211111 1222222 467888888766 577777654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=2.6 Score=47.51 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC---c---ceEEEEEECCEEEEEecccCCCCCCeEEE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK---R---CYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
-++.++.||+.+.. +.++++|..+++ |+.-...+.. . ...+.++.+++||+... ...+..
T Consensus 64 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~A 131 (582)
T 1flg_A 64 AIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVA 131 (582)
T ss_dssp CEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEE
T ss_pred cEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEE
Confidence 35679999998752 249999998876 8865433221 0 11234567899988542 257999
Q ss_pred EeCCCCc--EEeecCCCccc--CceEEEEECC------EEEEEcccCC-CCcCCceEEEeCCCCe--EEEc
Q psy17309 576 YNYTENQ--WSLIAPMNVER--SDASATTLQG------KIYITGGFNG-HNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 576 yd~~t~~--W~~~~~~p~~r--~~~~~~~~~~------~lyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~ 633 (824)
+|..|.+ |+.-..-+... ...+-++.++ .||+ |...+ ......+..||+++++ |+.-
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 9998875 87543221111 1112234455 6665 33211 1224578999998765 8653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=1.9 Score=44.23 Aligned_cols=230 Identities=8% Similarity=0.013 Sum_probs=107.7
Q ss_pred ceEEEEECC-CCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECC--CCceEEeccCCCCcceE
Q psy17309 475 DFVETYDTR-ADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAV--TKVWKEIAPMNFKRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~-~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r~~~ 549 (824)
..+..||.. +.+...+.... ....-.+++.. +..+|+.+. .. ..+..|+.. ++++..+..++.+..-.
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~-~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVR-PE----FRVLAYRIAPDDGALTFAAESALPGSLT 87 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEET-TT----TEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred CeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeec-CC----CeEEEEEecCCCCceeeccccccCCCCc
Confidence 457777764 34443321111 11111223333 344655543 21 457776665 77887665443322222
Q ss_pred EEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCC-cEEeecCCCcccCceEEEEE-C-CEEEEEcccCCCCcCCceEEEe
Q psy17309 550 STAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIAPMNVERSDASATTL-Q-GKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 550 ~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~v~~yd 624 (824)
.++.. ++ .+|+.+.. ...+.+||.... ..+.+...+.....++++.. + ..||+.+..+ ..+..||
T Consensus 88 ~~~~s~dg~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d 157 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYN-----AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ-----DRICLFT 157 (343)
T ss_dssp EEEECTTSSEEEEEETT-----TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG-----TEEEEEE
T ss_pred EEEEcCCCCEEEEEecC-----CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC-----CEEEEEE
Confidence 33333 44 46665432 246888887422 22222222222222333333 3 4677765332 4688999
Q ss_pred CCC-CeEEEcC----CCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEeCC--CCCEEE---CCCCCCC---Ccc
Q psy17309 625 PEC-NQWTLIE----PMRHRRSGVSCIAY-HE-CIYVIGGFNGMSRMCNGEKYNPV--TKTWSQ---VPDMYNP---RSN 689 (824)
Q Consensus 625 ~~~-~~W~~~~----~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~---~~~~p~~---r~~ 689 (824)
..+ .+...+. ..+.......++.. ++ .+|+.+.. ...+.+||.. +.++.. +..++.. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 887 6665332 11211111122222 44 47777643 2568888884 344432 2223322 112
Q ss_pred eEEEEE--CC-EEEEEccCCCCceeeEEEEEECC--CCcEEeccCCC
Q psy17309 690 FAIEVI--DD-MIFAIGGFNGVTTIYHVECYDEK--TDEWYEATDMN 731 (824)
Q Consensus 690 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p 731 (824)
...+.+ ++ .||+.+..++ .+.+||+. +.+++.+..++
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~-----~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTAS-----LITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTT-----EEEEEEECTTSCCEEEEEEEE
T ss_pred ccceEECCCCCEEEEEecCCC-----EEEEEEEcCCCCceEEeeeec
Confidence 222333 34 6766654332 57788876 55666664443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=2.9 Score=44.24 Aligned_cols=186 Identities=10% Similarity=-0.018 Sum_probs=93.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+++.|+.+ ..+..||........+.... ..-.+++.. ++..++.|+.+ ..+..||..+.+....
T Consensus 119 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 119 DGNSIVTGVEN-----GELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVE-----NVTILWNVISGTVMQH 186 (425)
T ss_dssp TSSEEEEEETT-----SCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETT-----CCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecC-----CeEEEEECCCCcEEEE
Confidence 56677777754 35788884444333333211 112233332 56666666643 4578889887765433
Q ss_pred cCCCccc--------------CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcc-eEEEEE-CC
Q psy17309 587 APMNVER--------------SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSG-VSCIAY-HE 650 (824)
Q Consensus 587 ~~~p~~r--------------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~ 650 (824)
-..+... ...+++...+..+++|+.+ ..+..||..+.+-... +...... .+++.. ++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGK--LIGHHGPISVLEFNDTN 259 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEE--ECCCSSCEEEEEEETTT
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeee--eccCCCceEEEEECCCC
Confidence 2222111 0222333333345666654 4688999887542211 1111111 222222 56
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+.++.|+.+ ..+.+||..+.+-...-.. ....-.+++.. ++ +++.|+.++ .+.+||..+.+-
T Consensus 260 ~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~ 322 (425)
T 1r5m_A 260 KLLLSASDD-----GTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTL 322 (425)
T ss_dssp TEEEEEETT-----SCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEE
T ss_pred CEEEEEcCC-----CEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcE
Confidence 677777753 4678888876432111110 11112233333 55 777776654 688899877653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=95.35 E-value=1.1 Score=48.18 Aligned_cols=219 Identities=12% Similarity=0.167 Sum_probs=106.9
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
+.|..+|..+++...+-..... ...-.+++.. ++..++.|+.+ ..+..||..+++-... +...........
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~--~~~h~~~v~~~s 196 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRN--MTSHSARVGSLS 196 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEE--EeCCCCceEEEe
Confidence 4789999999876653111111 1112233333 66777888765 3588999988754322 222222233445
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe--
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ-- 629 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 629 (824)
.++.+.+.|+.+ ..+..+|..+..... ..+............ ++..++.|+.+ +.+..+|..+.+
T Consensus 197 ~~~~~l~sgs~d-----~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 197 WNSYILSSGSRS-----GHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGG 265 (420)
T ss_dssp EETTEEEEEETT-----SEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSC
T ss_pred eCCCEEEEEeCC-----CceeEeeecccceee-EEecccccceeeeeecCCCCeeeeeecc-----ccceEEeecccccc
Confidence 577777777753 456777766543221 111111111112222 55666666654 356677766543
Q ss_pred EEEcCCCCCCCcceEEEEE---CCEEEEEe-cCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEc
Q psy17309 630 WTLIEPMRHRRSGVSCIAY---HECIYVIG-GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIG 703 (824)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~---~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 703 (824)
+..+...........+... +..+++.| |.. -..|.+||..+.+-...-.. .....+++.. ++.+++.+
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~----D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT----TCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEE
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecC----CCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEE
Confidence 1111111111111122222 44555554 432 24688899887654332111 1111222222 45666655
Q ss_pred cCCCCceeeEEEEEECCCC
Q psy17309 704 GFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 704 G~~~~~~~~~v~~yd~~~~ 722 (824)
|...+ .+.+||..+.
T Consensus 340 g~~d~----~I~iwd~~~~ 354 (420)
T 4gga_A 340 GFAQN----QLVIWKYPTM 354 (420)
T ss_dssp CTTTC----CEEEEETTTC
T ss_pred ecCCC----EEEEEECCCC
Confidence 54332 5788887764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.62 Score=48.49 Aligned_cols=193 Identities=11% Similarity=0.032 Sum_probs=97.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+++.|+.+ ..+..||..+.+-... +...... .+++.. ++..++.|+.+ ..+.+||..+.+-..
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVA 110 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 45566667644 3588899887654322 2111111 223332 56677777643 568899998876543
Q ss_pred ecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCe----EEEcCCCC-------CCCcceEEEEE--CCE
Q psy17309 586 IAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQ----WTLIEPMR-------HRRSGVSCIAY--HEC 651 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~p-------~~r~~~~~~~~--~~~ 651 (824)
.-..+. .-.+++.. ++..++.++.+.......+..||..+.. +......+ .......++.+ +++
T Consensus 111 ~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 111 TWKSPV--PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEECSS--CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EeecCC--CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 322221 11222222 5556666554422223467777765432 22211111 01012223333 566
Q ss_pred EEEEecCCCCCccceEEEEeCCCC-CEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTK-TWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.++.|+.+ ..+.+||+.+. +-... +.........+.+ ++..++.|+.++ .+.+||..+.+-..
T Consensus 189 ~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 189 YIIAGHKD-----GKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRDT-----NSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEEETT-----SEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEE
T ss_pred EEEEEcCC-----CEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCCc-----eEEEEECCCCceee
Confidence 77777653 47889998863 22111 1111112222333 677777777654 68889988765443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.41 Score=50.22 Aligned_cols=192 Identities=8% Similarity=0.040 Sum_probs=97.9
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCceEEecc--CCC-CcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP--MNF-KRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
++...+..++.|+.+ ..+..||..+++-..... +.. ...-.+++.. ++..++.|+.+ ..+.++|+.
T Consensus 88 ~~~s~d~~l~~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~ 157 (344)
T 4gqb_B 88 LTWVGERGILVASDS-----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLA 157 (344)
T ss_dssp EEEETTTEEEEEETT-----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred EEEeCCCeEEEEECC-----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECC
Confidence 444444445566644 458888988765321111 101 1111223332 67777878754 458889988
Q ss_pred CCcEEeecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE---CCEEE
Q psy17309 580 ENQWSLIAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY---HECIY 653 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iy 653 (824)
+++-. ..+.........+.+ +..+++.|+.+ ..+..||..+.+-...-..........++.+ +++++
T Consensus 158 ~~~~~--~~~~~h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 158 QQVVL--SSYRAHAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp TTEEE--EEECCCSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred CCcEE--EEEcCcCCceEEEEecCCCCCceeeeccc-----cccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence 87532 222211112222222 33577777765 4688899887654332111111122222332 56788
Q ss_pred EEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--C-CEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 654 VIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--D-DMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+.|+.+ ..|.+||..+.+ .+..+.........+.+ + .++++.|+.++ .+.+||..+.+-
T Consensus 231 ~sg~~d-----g~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-----~i~vwd~~~~~~ 292 (344)
T 4gqb_B 231 VFGDEN-----GTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-----SLAVLDSSLSEL 292 (344)
T ss_dssp EEEETT-----SEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTS-----CEEEECTTCCEE
T ss_pred EEeccC-----CcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCcE
Confidence 888754 468889987643 12112111122223333 3 36777787765 578889887653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=1.6 Score=47.47 Aligned_cols=238 Identities=5% Similarity=-0.078 Sum_probs=115.8
Q ss_pred EEEEEccCCCCCCCceEEEEECC--CCcEEE-cccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTR--ADRWVK-IDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~--~~~W~~-~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
.+++.|+.. ..+..||.. +.+... +.... .+..-.+++.. ++..++.|+.+ ..++.+|..+...
T Consensus 116 ~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 116 RLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIADKF-----GDVYSIDINSIPE 183 (450)
T ss_dssp EEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCCC
T ss_pred EEEEEECCC-----CeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEeCC-----CcEEEEecCCccc
Confidence 445666532 457778876 443322 11000 11112233333 55666667643 4578888766543
Q ss_pred EE--eccCCCC-cceEEEE-EEC---CEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCcccCceEEEEECCEEEEE
Q psy17309 537 KE--IAPMNFK-RCYVSTA-VHQ---DVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNVERSDASATTLQGKIYIT 608 (824)
Q Consensus 537 ~~--~~~~~~~-r~~~~~~-~~~---~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~lyv~ 608 (824)
.. ...+... ..-.+++ .-+ +.+++.|+.+ ..+.+||+.+...... ..-........+.. ++++++.
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 21 1111111 1112233 335 7777888754 4688888876653221 10011111111222 7777778
Q ss_pred cccCCCCcCCceEEEeCCCCeEEEcCCC------------------------CCCCcceEEEEE-CCEEEEEecCCCCCc
Q psy17309 609 GGFNGHNCLNSCEVYDPECNQWTLIEPM------------------------RHRRSGVSCIAY-HECIYVIGGFNGMSR 663 (824)
Q Consensus 609 GG~~~~~~~~~v~~yd~~~~~W~~~~~~------------------------p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 663 (824)
|+.+ ..+..||..+.+....-.. +.......++.. +++.+++++..
T Consensus 258 ~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---- 328 (450)
T 2vdu_B 258 AGGD-----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---- 328 (450)
T ss_dssp EESS-----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----
T ss_pred EeCC-----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----
Confidence 8754 4688899887764322110 001111122222 34444444411
Q ss_pred cceEEEEeC--C-CCCEEECCCCCCCCcceEEEEECCEEEEEccCCCC----ceeeEEEEEECCCCcEE
Q psy17309 664 MCNGEKYNP--V-TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV----TTIYHVECYDEKTDEWY 725 (824)
Q Consensus 664 ~~~v~~yd~--~-~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~----~~~~~v~~yd~~~~~W~ 725 (824)
...+.+||. . ..++..+..++....-.+++...+.+++..+.... ...-.++.++.+++.|+
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 256788887 3 34555554443333333445556777777654321 22236777888888885
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.39 Score=48.98 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=93.5
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
++..++.|+.+ ..+..||..+.+...+..+...... .+++.. ++.+++.|+.+ ..+.++|..+..|
T Consensus 20 ~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 20 YGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVMIWKEENGRW 89 (297)
T ss_dssp TSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEEEEEBSSSCB
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEEEEEcCCCce
Confidence 45666777754 3577888765433222222211111 223322 26777777754 5688899988877
Q ss_pred EeecCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCCCCcceEEEEE----------
Q psy17309 584 SLIAPMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRHRRSGVSCIAY---------- 648 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---------- 648 (824)
..+..+.........+.. + +.+++.|+.+ ..+..||..+.. +... .+.........+..
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCBCCE-EEECCSSCEEEEEECCCC------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCceeee-eeecccCccceEeecCCccccccc
Confidence 554333222222223333 2 5667777755 356777776542 2100 00000011111111
Q ss_pred -----CCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCCCCcceEEEEE--C---CEEEEEccCCCCceeeEEEE
Q psy17309 649 -----HECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYNPRSNFAIEVI--D---DMIFAIGGFNGVTTIYHVEC 716 (824)
Q Consensus 649 -----~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~i~v~GG~~~~~~~~~v~~ 716 (824)
++++++.|+.+ ..+..||..+. .|.....+.........+.+ + +.+++.|+.++ .+.+
T Consensus 164 ~~~~~~~~~l~sgs~D-----~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----~v~i 233 (297)
T 2pm7_B 164 HNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----TCII 233 (297)
T ss_dssp ------CCEEEEEETT-----SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEE
T ss_pred CCCCCCcceEEEEcCC-----CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-----cEEE
Confidence 24577778764 35666766543 35444333322222233333 2 47888888765 4667
Q ss_pred EECCC
Q psy17309 717 YDEKT 721 (824)
Q Consensus 717 yd~~~ 721 (824)
||+++
T Consensus 234 Wd~~~ 238 (297)
T 2pm7_B 234 WTQDN 238 (297)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77655
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.57 Score=49.93 Aligned_cols=146 Identities=8% Similarity=0.007 Sum_probs=74.7
Q ss_pred EEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 505 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
+...+..++.|+.+ ..+..||..+.+-...-... ...-.+++.. ++..++.|+.+ ..+.+||..+.+.
T Consensus 213 ~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 213 EWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNS 281 (425)
T ss_dssp EEEETTEEEEECGG-----GCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSC
T ss_pred EEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCcc
Confidence 33333446666543 46889998876432111111 1112233333 56677777643 4578888876542
Q ss_pred Ee-ecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCC
Q psy17309 584 SL-IAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFN 659 (824)
Q Consensus 584 ~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 659 (824)
.. +.. ....-.+++.. ++ +++.|+.+ ..+..||..+.+-...-. ........+.+ ++.+++.|+.+
T Consensus 282 ~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 282 QNCFYG--HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI--VDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SEEECC--CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE--CTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEecC--CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc--cCCccEEEEEEcCCCCEEEEEECC
Confidence 11 111 11122233333 55 66666654 468899988765332221 11122223333 57777777754
Q ss_pred CCCccceEEEEeCCCCC
Q psy17309 660 GMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~ 676 (824)
..+.+||..+..
T Consensus 352 -----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 352 -----GQVNVYDLKKLN 363 (425)
T ss_dssp -----SCEEEEECHHHH
T ss_pred -----CeEEEEECCCCc
Confidence 467788876543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=1.6 Score=50.63 Aligned_cols=191 Identities=7% Similarity=-0.058 Sum_probs=100.8
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC-cEEeecCCCccc----Cc
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIAPMNVER----SD 595 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r----~~ 595 (824)
...++.+|..+++-..+............+.. +++..+++..+.......++.+|+.+. ....+....... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 35789999998876655432222222222222 565445544443333457899999988 666553211111 01
Q ss_pred eEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CC-EEEEEecCCCCCccceEEEE
Q psy17309 596 ASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HE-CIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 596 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~y 670 (824)
.....- +|++++.+..++ ...++.+|........+..-... ......+ ++ .||+.+..+ ......++.+
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~~~~--v~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~ 387 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKGEWE--VTNFAGFDPKGTRLYFESTEA-SPLERHFYCI 387 (706)
T ss_dssp CCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCSSSC--EEEEEEECTTSSEEEEEESSS-CTTCBEEEEE
T ss_pred CceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCCCeE--EEeeeEEcCCCCEEEEEecCC-CCceEEEEEE
Confidence 112233 677666554433 35678888777777766432211 1121233 44 566655432 2123578999
Q ss_pred eCCCCCEEECCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 671 NPVTKTWSQVPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 671 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
|..+.+.+.+.. ....++++. -+++.+++...+.. .-..++++|.++++
T Consensus 388 d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~-~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSPT-VPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECSS-CSCEEEEEESSSCE
T ss_pred EcCCCCceeccC---CCceEEEEECCCCCEEEEEecCCC-CCcEEEEEECCCCe
Confidence 998877666652 111222222 25665555433221 22468889988876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=95.16 E-value=0.95 Score=47.87 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=92.6
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCc------EEEcccCCCCC-CCceeEEEEE-----CCEE-EEEeecCCCcccceEE
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADR------WVKIDQVDPMG-PRAYHGTAVI-----GYNI-YVIGGFDGNEYYNSCR 527 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~------W~~~~~~~~~~-~r~~~~~~~~-----~~~l-yv~GG~~~~~~~~~~~ 527 (824)
..++.|+.. ..+..||..+.+ +..+....... ...-.+++.. ++.. ++.|+.+ ..+.
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~ 151 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTY 151 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEE
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEE
Confidence 456666542 357778776665 55543221100 1222333333 3455 7777754 3477
Q ss_pred EEECCC------Cc---eE---Eecc-----CCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC
Q psy17309 528 CFNAVT------KV---WK---EIAP-----MNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM 589 (824)
Q Consensus 528 ~yd~~~------~~---W~---~~~~-----~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~ 589 (824)
.||..+ .+ |. .+.. ......-.+++.. ++ +++.|+.+ ..+..||..+.+-...-..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFES 225 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEEC
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEec
Confidence 777665 22 21 1110 0011112233333 45 66666643 5688999987654322111
Q ss_pred -Ccc---cCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC-----------CCcceEEEEE--CC
Q psy17309 590 -NVE---RSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH-----------RRSGVSCIAY--HE 650 (824)
Q Consensus 590 -p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-----------~r~~~~~~~~--~~ 650 (824)
+.. ......+.+ ++.+++.|+.++ ....+..||..+.+-...-..+. .......+.+ ++
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 001 122222222 566777776541 11468889987764322111100 1222223333 57
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
++++.|+.+ ..+.+||..+.+
T Consensus 304 ~~l~~~~~d-----g~i~iwd~~~~~ 324 (397)
T 1sq9_A 304 ETLCSAGWD-----GKLRFWDVKTKE 324 (397)
T ss_dssp SEEEEEETT-----SEEEEEETTTTE
T ss_pred CEEEEEeCC-----CeEEEEEcCCCc
Confidence 777777753 468899987664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.92 Score=52.66 Aligned_cols=152 Identities=11% Similarity=-0.001 Sum_probs=81.3
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCC----cce
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRR----SGV 643 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r----~~~ 643 (824)
..++++|+.+.+-..+............+.. +++..+++..+.......+..+|+.+. ....+....... ...
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 5689999988876555432111112222222 565444544443333457899999988 666553111110 011
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--C-CEEEEEccCCCCceeeEEEEEE
Q psy17309 644 SCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--D-DMIFAIGGFNGVTTIYHVECYD 718 (824)
Q Consensus 644 ~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd 718 (824)
.+..- ++++++.+..++ ...++.+|........+..-.... .....+ + +.|++.+..++ .....++.+|
T Consensus 315 ~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d 388 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEAS-PLERHFYCID 388 (706)
T ss_dssp CEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSSC-TTCBEEEEEE
T ss_pred ceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCCC-CceEEEEEEE
Confidence 12223 677666654432 357888887777777764322111 121233 3 45666654422 2234789999
Q ss_pred CCCCcEEecc
Q psy17309 719 EKTDEWYEAT 728 (824)
Q Consensus 719 ~~~~~W~~~~ 728 (824)
.++...+.+.
T Consensus 389 ~~~~~~~~l~ 398 (706)
T 2z3z_A 389 IKGGKTKDLT 398 (706)
T ss_dssp TTCCCCEESC
T ss_pred cCCCCceecc
Confidence 9887766654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.10 E-value=1.2 Score=46.73 Aligned_cols=175 Identities=11% Similarity=0.192 Sum_probs=91.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
++..++.|+.+ ..+..||..+++-...-.-.... -.++... ++..++.|+.+ ..+..||+.+.+..
T Consensus 165 ~~~~l~t~s~D-----~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 165 SDMQILTASGD-----GTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCV 233 (354)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEE
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEE
Confidence 34455566543 46888999887643211111111 1122221 35677778754 45888998887653
Q ss_pred eecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 585 LIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
.. +........++.+ ++..++.|+.+ ..+..||..++.-...-...........+.+ ++.+++.|+.+
T Consensus 234 ~~--~~~h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d- 305 (354)
T 2pbi_B 234 QA--FETHESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND- 305 (354)
T ss_dssp EE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-
T ss_pred EE--ecCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-
Confidence 32 1111112222233 56777788765 4688899887653322221222223333333 57777777754
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
..+.+||..+.+=. ..+.........+.+ +++.++.|+.++
T Consensus 306 ----~~i~vwd~~~~~~~--~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 306 ----YTINVWDVLKGSRV--SILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ----SCEEEEETTTCSEE--EEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ----CcEEEEECCCCceE--EEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 46888998665421 111111122222333 677888887765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.83 Score=46.97 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=97.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcE--
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQW-- 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W-- 583 (824)
.+.+|+.++. ...+..||+.+++.......+. ....++.. ++ .+|+.+.. ...++++|+.+.+.
T Consensus 9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~-----~~~i~~~d~~~~~~~~ 76 (331)
T 3u4y_A 9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDF-----CQTLVQIETQLEPPKV 76 (331)
T ss_dssp CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEEST-----TCEEEEEECSSSSCEE
T ss_pred CCEEEEEecC-----CCeEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCC-----CCeEEEEECCCCceeE
Confidence 4677877753 3579999999998765444332 22233332 44 57777652 24899999988774
Q ss_pred EeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecCC
Q psy17309 584 SLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HE-CIYVIGGFN 659 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~ 659 (824)
..+.....++ ++++.. +..+| .+...+ ....+..||+.+++....- +.....+.++.. ++ .+|+.+...
T Consensus 77 ~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 77 VAIQEGQSSM--ADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp EEEEECSSCC--CCEEECTTSSEEE-ECCCSS--SSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETT
T ss_pred EecccCCCCc--cceEECCCCCEEE-EecCCC--CcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCC
Confidence 2222222222 213333 34566 332211 1137999999888754432 222222334433 44 488776532
Q ss_pred CCCccce-EEEEeCCCCC-EEEC--CCCCCCCcceEEEEE-CC-EEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 660 GMSRMCN-GEKYNPVTKT-WSQV--PDMYNPRSNFAIEVI-DD-MIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 660 ~~~~~~~-v~~yd~~~~~-W~~~--~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.. +.+|+...+. -... ..++.......++.. ++ .+|+.+..+ ..+.+||+.+.+.
T Consensus 150 -----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 150 -----ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPEN 210 (331)
T ss_dssp -----TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTS
T ss_pred -----CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcc
Confidence 34 6666654321 1110 011111111222222 45 477776433 2688999987765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.06 E-value=1 Score=46.75 Aligned_cols=229 Identities=9% Similarity=0.038 Sum_probs=108.6
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECC-CCceEEeccCCC------C
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAV-TKVWKEIAPMNF------K 545 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~------~ 545 (824)
..+..||..+.++..+...... ...-..+++. +..||+.+.. ...+..||.. +++...+...+. +
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~-~~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~ 136 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAP-GTPPAYVAVDEARQLVYSANYH-----KGTAEVMKIAADGALTLTDTVQHSGHGPRP 136 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE-SCCCSEEEEETTTTEEEEEETT-----TTEEEEEEECTTSCEEEEEEEECCCCCSST
T ss_pred ceEEEEEecCCcEEEeeeeecC-CCCCEEEEECCCCCEEEEEeCC-----CCEEEEEEeCCCCCeeecceeecCCCCCCc
Confidence 4688888877776654321111 1112234444 4456666521 2457777764 334443322211 1
Q ss_pred c----ceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCC-CCcEEeecC--CCcccCceEEEEE-CC-EEEEEcccCCCC
Q psy17309 546 R----CYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYT-ENQWSLIAP--MNVERSDASATTL-QG-KIYITGGFNGHN 615 (824)
Q Consensus 546 r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~--~p~~r~~~~~~~~-~~-~lyv~GG~~~~~ 615 (824)
| .-+.++.. ++++|+.+.. .+.+.+||+. +.+...+.. .+....-..++.. ++ .+|+.+..+
T Consensus 137 ~~~~~~~~~~~~spdg~l~v~~~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~--- 208 (347)
T 3hfq_A 137 EQDGSHIHYTDLTPDNRLAVIDLG-----SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS--- 208 (347)
T ss_dssp TCSSCCEEEEEECTTSCEEEEETT-----TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT---
T ss_pred cccCCCceEEEECCCCcEEEEeCC-----CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC---
Confidence 1 12233332 6677776532 2578889887 565554432 2211111122322 45 478765432
Q ss_pred cCCceEEEe--CCCCeEEEcC---CCCCC---CcceEEEEE--CC-EEEEEecCCCCCccceEEEEeCCC-CCEEECCCC
Q psy17309 616 CLNSCEVYD--PECNQWTLIE---PMRHR---RSGVSCIAY--HE-CIYVIGGFNGMSRMCNGEKYNPVT-KTWSQVPDM 683 (824)
Q Consensus 616 ~~~~v~~yd--~~~~~W~~~~---~~p~~---r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~ 683 (824)
+.+.+|+ ..+++++.+. ..+.. ......+.+ ++ .||+.+.. .+.+.+||... .+++.+..+
T Consensus 209 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~ 281 (347)
T 3hfq_A 209 --SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQI 281 (347)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEE
T ss_pred --CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEE
Confidence 3445554 4457765443 23321 122333333 45 47776643 25678888753 355555433
Q ss_pred CCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 684 YNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 684 p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+........+.+ +++ ||+.+..++ .-.++..|+++.+-+.+
T Consensus 282 ~~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 282 STEGDFPRDFDLDPTEAFVVVVNQNTD---NATLYARDLTSGKLSLL 325 (347)
T ss_dssp ECSSSCCCEEEECTTSSEEEEEETTTT---EEEEEEECTTTCCEEEE
T ss_pred ecCCCCcCeEEECCCCCEEEEEEcCCC---cEEEEEEeCCCCeEEec
Confidence 331111122333 454 655543222 12344448888877765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.53 Score=50.61 Aligned_cols=184 Identities=9% Similarity=0.104 Sum_probs=96.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+++.|+.+ ..+..||..+++-...-..... .-.+++.. ++.+++.||.+ ..+.+||..+..- +
T Consensus 119 ~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~D-----~~i~iwd~~~~~~--~ 185 (410)
T 1vyh_C 119 VFSVMVSASED-----ATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSAD-----MTIKLWDFQGFEC--I 185 (410)
T ss_dssp SSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETT-----SCCCEEETTSSCE--E
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--e
Confidence 45567777754 3588899887754322111111 11222222 56778888755 3456778766542 2
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
..+........++.+ ++..++.|+.+ ..+..||..+..-... +.........+.. ++.+++.|+.+
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D--- 255 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND--- 255 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC---
Confidence 222222222223333 56667777765 4688899887653221 1111222222333 57778888764
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE----------------------CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI----------------------DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----------------------~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..+.+||..+..-... +........++.+ ++.+++.|+.++ .+.+||..
T Consensus 256 --~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~-----~i~iwd~~ 326 (410)
T 1vyh_C 256 --QTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-----TIKMWDVS 326 (410)
T ss_dssp --SCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS-----EEEEEETT
T ss_pred --CeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC-----eEEEEECC
Confidence 4577888876654321 1000111111111 256778887665 68889987
Q ss_pred CCc
Q psy17309 721 TDE 723 (824)
Q Consensus 721 ~~~ 723 (824)
+..
T Consensus 327 ~~~ 329 (410)
T 1vyh_C 327 TGM 329 (410)
T ss_dssp TTE
T ss_pred CCc
Confidence 753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=95.04 E-value=2.4 Score=48.58 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=106.8
Q ss_pred cceEEEEECCC------CceEEec-cCCCCcceEEEEEECCEEEEEecccCCC---CCCeEEEEeCC-CCcEEeecCCCc
Q psy17309 523 YNSCRCFNAVT------KVWKEIA-PMNFKRCYVSTAVHQDVIYAMGGYNGQR---RQNSVEKYNYT-ENQWSLIAPMNV 591 (824)
Q Consensus 523 ~~~~~~yd~~~------~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~-t~~W~~~~~~p~ 591 (824)
...++.+|..+ ++...+. .-.. ........-+|+..++...+... ....++++|.. +.++.....+..
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 36799999988 6666654 3221 11111222356555544433211 13579999998 563333222221
Q ss_pred c--cCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCc-------ceEEEEE-CCEEEEEecCCC
Q psy17309 592 E--RSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS-------GVSCIAY-HECIYVIGGFNG 660 (824)
Q Consensus 592 ~--r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~iyv~GG~~~ 660 (824)
. ......+.. +|++|+.+..++ ...++.+|+.+.+++.+.+...... ....+.. ++++++.+.. +
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred CCCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 1 111222222 677777765443 2478999998888988754322110 1123333 6788777654 2
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcceEE-EEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI-EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
...++.+|+.+.+.+.+.... ....++ ..-++.+++..+... ....++.+|+++.+.+.+
T Consensus 315 ---~~~l~~~d~~~~~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 315 ---AAVLGILDPESGELVDAAGPW--TEWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRARTI 375 (662)
T ss_dssp ---SCEEEEEETTTTEEEECCSSC--CEEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCCEEEE
T ss_pred ---ccEEEEEECCCCcEEEecCCC--CeEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCceEEe
Confidence 457888899888777764321 111222 334667766654322 344789999988887765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.3 Score=50.38 Aligned_cols=189 Identities=13% Similarity=0.087 Sum_probs=98.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
++..++.|+.+ ..+..||..++....+..+...... .+++.. ++.+++.|+.+ ..+.++|+.+..|
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWREENGTW 93 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEECCSSSCC
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEECCCCcc
Confidence 45566677654 4578888877654333333221111 223332 25677777754 4588899988777
Q ss_pred EeecCCCcccCce-EEEEE-C--CEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEEE----------
Q psy17309 584 SLIAPMNVERSDA-SATTL-Q--GKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIAY---------- 648 (824)
Q Consensus 584 ~~~~~~p~~r~~~-~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~---------- 648 (824)
..+..+....... +++.. + +.+++.|+.+ ..+..||..+. .|.....+........++..
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 5543332222222 22222 2 5677777765 35777777665 46543322111111111111
Q ss_pred ---------CCEEEEEecCCCCCccceEEEEeCCC-CCEEECCCCCCCCcceEEEEE--C----CEEEEEccCCCCceee
Q psy17309 649 ---------HECIYVIGGFNGMSRMCNGEKYNPVT-KTWSQVPDMYNPRSNFAIEVI--D----DMIFAIGGFNGVTTIY 712 (824)
Q Consensus 649 ---------~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~ 712 (824)
.++.++.||.+ ..+..+|... ..|..+..+.........+.+ + +.+++.|+.++
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~----- 238 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCD-----NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG----- 238 (316)
T ss_dssp --CCSCCCCCCCBEECCBTT-----SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----
T ss_pred ccccccCccccceEEEecCC-----CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-----
Confidence 13566666654 3455667653 457665544332222223333 2 26788888765
Q ss_pred EEEEEECCC
Q psy17309 713 HVECYDEKT 721 (824)
Q Consensus 713 ~v~~yd~~~ 721 (824)
.+.+||.++
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 577888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=94.98 E-value=1.3 Score=45.00 Aligned_cols=214 Identities=10% Similarity=0.002 Sum_probs=112.0
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.++++.. ....++.||+.+.+...+... ..-.+++.. ++.+++.. .+.+++||+.+++++.
T Consensus 25 ~~l~~~d~-----~~~~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 25 NSLLFVDI-----PAKKVCRWDSFTKQVQRVTMD-----APVSSVALRQSGGYVATI-------GTKFCALNWKEQSAVV 87 (297)
T ss_dssp TEEEEEET-----TTTEEEEEETTTCCEEEEECS-----SCEEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEE
T ss_pred CEEEEEEC-----CCCEEEEEECCCCcEEEEeCC-----CceEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEE
Confidence 45555543 235789999988766543221 112233333 55666543 1579999999998887
Q ss_pred eccCCC--C--cceEEEEEECCEEEEEecccC------CCCCCeEEEEeCCCCcEEee-cCCCcccCceEEEEE-C-CEE
Q psy17309 539 IAPMNF--K--RCYVSTAVHQDVIYAMGGYNG------QRRQNSVEKYNYTENQWSLI-APMNVERSDASATTL-Q-GKI 605 (824)
Q Consensus 539 ~~~~~~--~--r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~-~-~~l 605 (824)
+...+. + +....++.-+|.+|+..-... ......++++|+.. +...+ ..+..+ .+++.. + ..+
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~l 163 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIF 163 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEE
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEE
Confidence 654422 1 222222223678877431111 12335789998864 33332 222111 233333 3 468
Q ss_pred EEEcccCCCCcCCceEEEeC--CCCeEEE---cCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 606 YITGGFNGHNCLNSCEVYDP--ECNQWTL---IEPMRHRRSG-VSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 606 yv~GG~~~~~~~~~v~~yd~--~~~~W~~---~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
|+.... .+.+++||. .++.... +..++..... .+++.- +|.||+.... ...|.+||+++.+-.
T Consensus 164 yv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-----~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 164 YYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-----GGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-----TTEEEEECTTTCCEE
T ss_pred EEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-----CCEEEEEcCCCceEE
Confidence 887543 256788875 5554421 1122211112 223332 6889987642 146999999877654
Q ss_pred ECCCCCCCCcceEEEEEC----CEEEEEccCC
Q psy17309 679 QVPDMYNPRSNFAIEVID----DMIFAIGGFN 706 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~----~~i~v~GG~~ 706 (824)
..-.+|. .....++++ +.|||.....
T Consensus 234 ~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 234 QTVKLPV--DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEECSS--SBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEECCC--CCceEEEEeCCCCCEEEEEcCCc
Confidence 4333332 233444553 4788886543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.19 Score=54.63 Aligned_cols=187 Identities=8% Similarity=0.033 Sum_probs=98.5
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
++.+++.|+.++ .+..||..+..-..+-.+. ....-.+++.. ++.+++.|+.+ ..+.++|..++...
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRLQDFKGNILR 200 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEEEETTSCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEeeccCCcee
Confidence 345777887654 4888898876543332221 11112233432 56677777754 35788899887765
Q ss_pred eecCCCccc-CceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEecCC
Q psy17309 585 LIAPMNVER-SDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY---HECIYVIGGFN 659 (824)
Q Consensus 585 ~~~~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 659 (824)
.+....... ...+++.. ++.+++.|+.+ ..+..||..... +..+........++.+ +..+++.|+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc
Confidence 543322221 22223333 67778888765 367888876543 2222222222333333 34577777754
Q ss_pred CCCccceEEEEeCCCCCEEEC-CCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
..+.+||..+.+-... ............+.+ ++..++.|+.++ .+.+||..+.
T Consensus 273 -----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----~i~iwd~~~~ 328 (435)
T 4e54_B 273 -----QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----EIRVYSASQW 328 (435)
T ss_dssp -----SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----CEEEEESSSS
T ss_pred -----ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-----EEEEEECCCC
Confidence 3566788765432111 000000111112222 677788888765 5778887663
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=1.9 Score=41.13 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=81.7
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe--e----cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceE
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL--I----APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 621 (824)
+++..+|.+|+|=| ..+|+++.....+.. + +.+|.. .. ++... ++++|+|-| +.++
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEcc-------CEEE
Confidence 34557999999987 568888766544321 1 345532 22 22222 689999977 4566
Q ss_pred EEeCCCCe---EEEcCC--CCCCCcceEEEE-E--CCEEEEEecCCCCCccceEEEEeCCCCCEEE---------CCCCC
Q psy17309 622 VYDPECNQ---WTLIEP--MRHRRSGVSCIA-Y--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ---------VPDMY 684 (824)
Q Consensus 622 ~yd~~~~~---W~~~~~--~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---------~~~~p 684 (824)
+|+..+-. =..+.. +|..-...-+|. . ++++|+|-| +..++||..+++=.. .+.+|
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~Gip 164 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG 164 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCCCCC
Confidence 77633211 122322 332111222333 2 489999988 578999987543110 01222
Q ss_pred CCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 685 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 685 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..--++...++++|++-|. ..|.||..+++
T Consensus 165 --~~iDaAf~~~g~~YfFkg~-------~y~rf~~~~~~ 194 (207)
T 1pex_A 165 --DKVDAVYEKNGYIYFFNGP-------IQFEYSIWSNR 194 (207)
T ss_dssp --SCCSEEEEETTEEEEEETT-------EEEEEETTTTE
T ss_pred --CCccEEEEcCCcEEEEECC-------EEEEEeCCccE
Confidence 2223444569999999764 68999987764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.93 E-value=1.9 Score=44.52 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=107.0
Q ss_pred CCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEE
Q psy17309 483 RADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYA 560 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv 560 (824)
...+|..+.... +.+-....++.. ++.+|+.|.. ..+++-+-.-.+|+.+.... +...++++.. ++.+|+
T Consensus 107 gG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 107 GGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp TTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEE
T ss_pred CCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEE
Confidence 356798864321 112223344443 6788887641 23555444456899886533 2233444444 566776
Q ss_pred EecccCCCCCCeEEEE-eCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCC-CCeEEEcCC--
Q psy17309 561 MGGYNGQRRQNSVEKY-NYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPE-CNQWTLIEP-- 635 (824)
Q Consensus 561 ~GG~~~~~~~~~~~~y-d~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-- 635 (824)
+|- . ..+++- |....+|+.+.. +.+...+.++.. ++.+|+.+.. + .+...+.. ..+|+.+..
T Consensus 179 ~g~-~-----G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-G-----~~~~s~~D~G~tW~~~~~~~ 245 (327)
T 2xbg_A 179 VSS-R-----GSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG-G-----KIAFSDPDNSENWGELLSPL 245 (327)
T ss_dssp EET-T-----SSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT-T-----EEEEEETTEEEEECCCBCTT
T ss_pred EEC-C-----CcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC-c-----eEEEecCCCCCeeEeccCCc
Confidence 653 1 234443 333578998843 333444444433 6788877631 1 24444323 457987753
Q ss_pred CCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEEEEE-CCEEEEEccCCCCceee
Q psy17309 636 MRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAIEVI-DDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 636 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~ 712 (824)
++.....++++.. ++.+|+.|+. ..+++-.-...+|+.+.. .+.+...+.++.. +++++++|. ++
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G----- 313 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGGA------GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KG----- 313 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEEST------TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS-TT-----
T ss_pred ccCCcceEEEEecCCCEEEEEeCC------CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC-Cc-----
Confidence 3332223333333 5789998863 234444334679998863 2223333444443 667666653 33
Q ss_pred EEEEEEC
Q psy17309 713 HVECYDE 719 (824)
Q Consensus 713 ~v~~yd~ 719 (824)
.++.++.
T Consensus 314 ~i~~~~~ 320 (327)
T 2xbg_A 314 ILLRYVT 320 (327)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 4666764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.89 E-value=3.8 Score=41.65 Aligned_cols=213 Identities=8% Similarity=-0.070 Sum_probs=111.9
Q ss_pred eeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeC
Q psy17309 501 YHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNY 578 (824)
Q Consensus 501 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 578 (824)
..++++. ++.||+.--. ...++++|+.... ......+ ..-++++.. ++.+|+...... ...++++|+
T Consensus 34 pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~~---~~~v~~~d~ 102 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHE-----VGEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNAD---SIPVVSLVK 102 (306)
T ss_dssp EEEEEECTTSCEEEEETT-----TTEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECTT---SCEEEEEEC
T ss_pred cceEEECCCCCEEEEeCC-----CCeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccCC---cceEEEEcC
Confidence 3444443 5678887531 2568999988643 3222222 223344443 678888753211 135888999
Q ss_pred CCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCe---EEEcCC----CCC-C-CcceEEEEE
Q psy17309 579 TENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQ---WTLIEP----MRH-R-RSGVSCIAY 648 (824)
Q Consensus 579 ~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~----~p~-~-r~~~~~~~~ 648 (824)
.+.+.+.+...+..+...+.+.. ++.+|+... ....++++|+.+.. |..-+. .+. . ....+...-
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 88888877666655554444433 556777532 13578999987652 211110 111 1 112223333
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCC-CCE---EECCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 649 HECIYVIGGFNGMSRMCNGEKYNPVT-KTW---SQVPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W---~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
++.||+.--. .+.|++||+.. .+. ..+..+..| .+++. -+|+||+.-..+ +.|.+||++ .+
T Consensus 178 g~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~ 243 (306)
T 2p4o_A 178 GNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHIY-----NSVVRIAPD-RS 243 (306)
T ss_dssp TTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBTT-----CCEEEECTT-CC
T ss_pred CCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCCC-----CeEEEECCC-CC
Confidence 5679987542 36799999864 221 111111111 12332 267888885322 368899987 44
Q ss_pred EEeccCCCCCccceeEEEEc
Q psy17309 724 WYEATDMNIYRSALSACVIM 743 (824)
Q Consensus 724 W~~~~~~p~~r~~~~~~~~~ 743 (824)
...+...+.+.....++.+.
T Consensus 244 ~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 244 TTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EEEEECGGGTCTTEEEEEEC
T ss_pred EEEEeecccccCCceEEEEe
Confidence 44333333332333444443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=2 Score=43.37 Aligned_cols=188 Identities=10% Similarity=0.109 Sum_probs=89.6
Q ss_pred ECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCc-EE
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ-WS 584 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~ 584 (824)
.++..++.|+.+ ..+..||..+..-...-..... .-.+++.. ++..++.|+.+ ..+..++..... .+
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQG-FLNSVCYDSEKELLLFGGKD-----TMINGVPLFATSGED 95 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECSS-CEEEEEEETTTTEEEEEETT-----SCEEEEETTCCTTSC
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCCc-cEEEEEECCCCCEEEEecCC-----CeEEEEEeeecCCCC
Confidence 445556677654 4688888877654332221111 12233333 56777777754 346666655432 11
Q ss_pred eecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q psy17309 585 LIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRM 664 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 664 (824)
.+..+............++..++.|+.+ ..+..||.......... ...+.........++..++.|+.+
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d----- 164 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSFQDGVVISGSWD-----KTAKVWKEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASAD----- 164 (313)
T ss_dssp C-CEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTEEEEEEEC-CSSCEEEEEEEETTTTEEEEEETT-----
T ss_pred cccchhhcccCEEEEEecCCEEEEEeCC-----CCEEEEcCCcEEEeccc-CCCceeEEEEccCCCCEEEEEECC-----
Confidence 1222222222233333456666777655 35778883332222211 111111111122267777777754
Q ss_pred ceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 665 CNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+..||..... ..+..............-+++ ++.|+.++ .+.+||..+.+
T Consensus 165 ~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~ 216 (313)
T 3odt_A 165 KTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGD 216 (313)
T ss_dssp SCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCC
T ss_pred CCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchh
Confidence 457788833221 111111111111222233667 67777654 68889987654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.78 E-value=3.8 Score=42.26 Aligned_cols=228 Identities=11% Similarity=0.053 Sum_probs=110.4
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
+.+++.|+.. ..+..||..+.+-...-.. ....-.+++.. ++.+++.|+.+ ..+..||..+++-.
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 151 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHYVG---HGNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTLV 151 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEEES---CCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeeecC---CCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeEE
Confidence 4566666642 4688888877654331110 11122233333 56677777754 35889999887643
Q ss_pred Ee-ccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee-c-------------------------C
Q psy17309 538 EI-APMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-A-------------------------P 588 (824)
Q Consensus 538 ~~-~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~-------------------------~ 588 (824)
.. ..+...... .+++.. ++..++.|+.+ ..+..||..+.+-... . .
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp EEECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred EEecccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 32 211222222 223332 46677777753 4588888876532100 0 0
Q ss_pred CC-cccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeE------------EEcCCCC--CCCcceEEEEEC--CE
Q psy17309 589 MN-VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW------------TLIEPMR--HRRSGVSCIAYH--EC 651 (824)
Q Consensus 589 ~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W------------~~~~~~p--~~r~~~~~~~~~--~~ 651 (824)
.. ....-.+++.. +.+++.|+.+ ..+..||..+..= ..+..+. .......+..-+ ++
T Consensus 227 ~~~~~~~v~~~~~~-~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 227 RDIHRNYVDCVRWL-GDLILSKSCE-----NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp CSSCSSCCCEEEEE-TTEEEEECSS-----SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred ccCCcceEEEEEEc-CCEEEEEecC-----CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence 00 11111122223 5566666654 3577777655321 1111111 001111112234 77
Q ss_pred EEEEecCCCCCccceEEEEeCCCCCEE--ECCCCCCC--CcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTKTWS--QVPDMYNP--RSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+++.|+.+ ..+.+||..+.+-. .+..+... ......+.+ ++++++.||.++ .+.+||+.+
T Consensus 301 ~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~ 366 (366)
T 3k26_A 301 MLALGNQV-----GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-----SIWRWDRLR 366 (366)
T ss_dssp EEEEECTT-----SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----EEEEEEC--
T ss_pred EEEEEecC-----CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-----EEEEEEecC
Confidence 77888754 46888998775311 11111111 111222222 678888888765 678888753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=94.78 E-value=1.4 Score=44.84 Aligned_cols=184 Identities=11% Similarity=0.117 Sum_probs=94.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++..++.|+.+ ..+..||..++.-...-....... .+++. .++..++.|+.+ ..+.+||..+.+-..
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~- 91 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVV- 91 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEE-
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcE-EEEEEeCCCCEEEEECCC-----CEEEEEECCCCcEEE-
Confidence 45566677654 468889988765332111111111 12222 356677777743 568889988765321
Q ss_pred cCCCcccCce-EEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEecCCCC
Q psy17309 587 APMNVERSDA-SATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY---HECIYVIGGFNGM 661 (824)
Q Consensus 587 ~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~ 661 (824)
.+....... +++.. ++.+++.|+.+ ..+..||..++. .....+........++.+ ++.+++.|+.+
T Consensus 92 -~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-- 162 (304)
T 2ynn_A 92 -DFEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-- 162 (304)
T ss_dssp -EEECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT--
T ss_pred -EEeCCCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC--
Confidence 111111112 22222 56677777765 467788876542 111111111222233333 45678888764
Q ss_pred CccceEEEEeCCCCC--EEECCCCCCCCcceEEEEE----CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 662 SRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEVI----DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+..||..+.. ...... ..+ ....+.+ ++.+++.|+.++ .+.+||..+.+
T Consensus 163 ---~~v~iwd~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~l~s~s~D~-----~i~iWd~~~~~ 219 (304)
T 2ynn_A 163 ---RTVKVWSLGQSTPNFTLTTG--QER-GVNYVDYYPLPDKPYMITASDDL-----TIKIWDYQTKS 219 (304)
T ss_dssp ---SEEEEEETTCSSCSEEEECC--CTT-CEEEEEECCSTTCCEEEEEETTS-----EEEEEETTTTE
T ss_pred ---CeEEEEECCCCCccceeccC--CcC-cEEEEEEEEcCCCCEEEEEcCCC-----eEEEEeCCCCc
Confidence 468888876432 111110 111 1122222 556778887665 68889988764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=94.76 E-value=1.8 Score=45.53 Aligned_cols=182 Identities=10% Similarity=0.066 Sum_probs=94.4
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
.+++.|+.+ ..+..||..+.+....... ......-.+++.. ++.+++.|+.+ ..+..||..+.....
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQG-MGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQV 155 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECC-CSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeec-CCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEE
Confidence 456666532 3588899887766542111 1112233344444 34677777654 468899998876665
Q ss_pred eccCCCC-cceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCE-EEEEcccCC
Q psy17309 539 IAPMNFK-RCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGK-IYITGGFNG 613 (824)
Q Consensus 539 ~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~ 613 (824)
+...... ..-.+++.. ++..++.|+.+ ..+..||+....-..+.. .......+.+ ++. +++.|+.+
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d- 226 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMATSSVD- 226 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEEEETT-
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEEEeCC-
Confidence 5433221 112233333 56777777743 578889985443333321 1122222222 344 77777755
Q ss_pred CCcCCceEEEeCCC----CeEEEcCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCC
Q psy17309 614 HNCLNSCEVYDPEC----NQWTLIEPMRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 614 ~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
..+..||..+ ......- .. ......+.+ ++..++.|+.+ ..+.+||..+
T Consensus 227 ----~~i~iwd~~~~~~~~~~~~~~--~~-~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~ 282 (383)
T 3ei3_B 227 ----ATVKLWDLRNIKDKNSYIAEM--PH-EKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYD 282 (383)
T ss_dssp ----SEEEEEEGGGCCSTTCEEEEE--EC-SSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTB
T ss_pred ----CEEEEEeCCCCCcccceEEEe--cC-CCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCC
Confidence 3677888776 3322211 11 111222222 45666666643 4566777654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.7 Score=47.11 Aligned_cols=195 Identities=7% Similarity=0.012 Sum_probs=100.0
Q ss_pred CCEEEEEeecC--CCcccceEEEEECCCCceEEeccC---CCCcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFD--GNEYYNSCRCFNAVTKVWKEIAPM---NFKRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
++.+|+.++.. .......+++||+.++++..+... .....-.+++.. + +.+|+.+.. +.+.+||+.
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~- 100 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD- 100 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-
Confidence 56777771100 001125689999999888765431 011122334333 4 788887641 368999998
Q ss_pred CcEEee-cCCCcc---cCceEEEEE-CCEEEEEcccCC----------CCcCCceEEEeCCCCeEEEcC-CCCCCCcceE
Q psy17309 581 NQWSLI-APMNVE---RSDASATTL-QGKIYITGGFNG----------HNCLNSCEVYDPECNQWTLIE-PMRHRRSGVS 644 (824)
Q Consensus 581 ~~W~~~-~~~p~~---r~~~~~~~~-~~~lyv~GG~~~----------~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~ 644 (824)
++...+ ...... ..-..++.- +|++|+...... ......+++||+. .+...+. .... ..+
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~ 176 (314)
T 1pjx_A 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNG 176 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS---EEE
T ss_pred CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC---cce
Confidence 777655 332211 112233332 678888754321 1112568899987 5554432 1111 123
Q ss_pred EEEE-----CC-EEEEEecCCCCCccceEEEEeCC-CCCEEE---CCCCCCCC-cceEEEEE--CCEEEEEccCCCCcee
Q psy17309 645 CIAY-----HE-CIYVIGGFNGMSRMCNGEKYNPV-TKTWSQ---VPDMYNPR-SNFAIEVI--DDMIFAIGGFNGVTTI 711 (824)
Q Consensus 645 ~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~---~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~ 711 (824)
.+.. ++ .||+.... ...+++||+. +.+... ...++... .......+ ++.||+....+
T Consensus 177 i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~----- 246 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS----- 246 (314)
T ss_dssp EEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----
T ss_pred EEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC-----
Confidence 3333 34 57776542 2578888875 343321 11122111 11222233 67888874322
Q ss_pred eEEEEEECCCCc
Q psy17309 712 YHVECYDEKTDE 723 (824)
Q Consensus 712 ~~v~~yd~~~~~ 723 (824)
..+.+||+++.+
T Consensus 247 ~~i~~~d~~~g~ 258 (314)
T 1pjx_A 247 SHIEVFGPDGGQ 258 (314)
T ss_dssp TEEEEECTTCBS
T ss_pred CEEEEEcCCCCc
Confidence 268899998544
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=4.7 Score=43.54 Aligned_cols=212 Identities=13% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceE-
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK- 537 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~- 537 (824)
.+.+++|-| +..+.||..+++...-.-+.. +. .-++....+++|+|-| +..++||+.+++-.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi--~~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~ 220 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAV--GN-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPP 220 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTS--CC-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCC--Cc-cchheeeCCceEEEEC-------CEEEEEcCccCcccC
Confidence 345566665 357889988876543211122 22 2345555789999998 67889998665321
Q ss_pred -----------EeccCC------------------CCcceE-EEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEe-
Q psy17309 538 -----------EIAPMN------------------FKRCYV-STAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL- 585 (824)
Q Consensus 538 -----------~~~~~~------------------~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~- 585 (824)
.++... .+.... +++. .+|++|+|-| +..|++|.....+..
T Consensus 221 gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 221 GYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGWHSW 293 (460)
T ss_dssp TCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCCCCE
T ss_pred CCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCcCcc
Confidence 111100 011112 3333 4689999988 567888765533211
Q ss_pred -e----cCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC----------CCCCC--CcceEEEEE
Q psy17309 586 -I----APMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE----------PMRHR--RSGVSCIAY 648 (824)
Q Consensus 586 -~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----------~~p~~--r~~~~~~~~ 648 (824)
+ +.+|.. --++...++++|+|=| +.+++|+..++ .+..+ .+|.. ....-+|..
T Consensus 294 ~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~ 363 (460)
T 1qhu_A 294 PIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFV 363 (460)
T ss_dssp EGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEEC
T ss_pred chhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEE
Confidence 1 234433 2334445889999976 45777875431 12221 12322 222333433
Q ss_pred ---CCEEEEEecCCCCCccceEEEEeCCCC---CEEECCCCCCCCcceEEEE------------ECCEEEEEccCCCCce
Q psy17309 649 ---HECIYVIGGFNGMSRMCNGEKYNPVTK---TWSQVPDMYNPRSNFAIEV------------IDDMIFAIGGFNGVTT 710 (824)
Q Consensus 649 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~------------~~~~i~v~GG~~~~~~ 710 (824)
++++|++-| +..++||.... .+...+.+|. .. -++.. .++.+|++-|.
T Consensus 364 ~~~~~ktyfFkG-------~~ywryd~~~~Pr~i~~~~~gi~~-~v-dAaf~~~~~~~~~~~~~~~~~~yfF~g~----- 429 (460)
T 1qhu_A 364 CPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWPHE-KV-DGALCMEKPLGPNSCSTSGPNLYLIHGP----- 429 (460)
T ss_dssp CTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCSCS-CC-SEEEEESSCSSSCCSCSSSCEEEEEETT-----
T ss_pred eCCCCEEEEEEC-------CEEEEEECCCCccchhhhCCCCCC-Cc-CEEEecccccCcccccccCCeEEEEECC-----
Confidence 589999988 57889998632 1222222222 22 23333 45778988764
Q ss_pred eeEEEEEECC
Q psy17309 711 IYHVECYDEK 720 (824)
Q Consensus 711 ~~~v~~yd~~ 720 (824)
..+.||..
T Consensus 430 --~y~~~~~~ 437 (460)
T 1qhu_A 430 --NLYCYRHV 437 (460)
T ss_dssp --EEEEESSH
T ss_pred --EEEEEcCh
Confidence 56777754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=3.9 Score=41.88 Aligned_cols=225 Identities=10% Similarity=0.047 Sum_probs=119.1
Q ss_pred ceEEEEECCCCcEEEcccCCCC----------------CCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCce
Q psy17309 475 DFVETYDTRADRWVKIDQVDPM----------------GPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVW 536 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~----------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W 536 (824)
..+..||+.+.++..+...... ....-+++++. ++.|||.... ..+.++|+.++..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 5688899988777654221110 01123566666 5789987431 3488899887766
Q ss_pred EEeccCCCC---cceEEEEEE--CCEEEEEecccC------------CCCCCeEEEEeCCCCcEEeec-CCCcccCceEE
Q psy17309 537 KEIAPMNFK---RCYVSTAVH--QDVIYAMGGYNG------------QRRQNSVEKYNYTENQWSLIA-PMNVERSDASA 598 (824)
Q Consensus 537 ~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~ 598 (824)
+.+...... ..-..+++- +|.||+.-.... ......+++||+.+.+.+.+. .+. ...++
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p~gi 190 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH---VPGGA 190 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES---CCCEE
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc---cCcce
Confidence 554322111 112233333 578998642210 112357999999888765542 121 12233
Q ss_pred EEE-C-CEEEEEcccCCCCcCCceEEEeCCC---CeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CccceE
Q psy17309 599 TTL-Q-GKIYITGGFNGHNCLNSCEVYDPEC---NQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGM-----SRMCNG 667 (824)
Q Consensus 599 ~~~-~-~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~-----~~~~~v 667 (824)
+.- + +.|||.-.. .+.+.+||+.+ ...+.+..++. -.+++.- +|.|||....... .....+
T Consensus 191 a~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 191 EVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEECSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEeCCC---CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 333 3 358887322 25788999875 23444333332 2223322 5789988642100 012468
Q ss_pred EEEeCCCCCEEECCCCCC---CCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 668 EKYNPVTKTWSQVPDMYN---PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 668 ~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+||+....-..+.. |. .....+++.-+++|||.+..+ +.+.+|+++.+
T Consensus 263 ~~~d~~G~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~~~~-----~~i~~~~~~~~ 314 (322)
T 2fp8_A 263 IKFDEFGNILEVIPL-PPPFAGEHFEQIQEHDGLLYIGTLFH-----GSVGILVYDKK 314 (322)
T ss_dssp EEECTTSCEEEEEEC-CTTTTTSCCCEEEEETTEEEEECSSC-----SEEEEEEC---
T ss_pred EEECCCCCEEEEEEC-CCCCccccceEEEEeCCEEEEeecCC-----CceEEEecccc
Confidence 999997554444321 11 122234445689999886432 36788887643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=4.5 Score=41.60 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=103.5
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCC------CcccC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPM------NVERS 594 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~------p~~r~ 594 (824)
..+..+|+.+++.........-..-+.+++. ++.||+.... ...+.+||+... .-..+... .....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 3699999988776432221111122334443 6789988652 357999998765 22222211 11111
Q ss_pred c-eEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-------CCCCc-ceEEEEE-C-CEEEEEecCCCC
Q psy17309 595 D-ASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-------RHRRS-GVSCIAY-H-ECIYVIGGFNGM 661 (824)
Q Consensus 595 ~-~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-------p~~r~-~~~~~~~-~-~~iyv~GG~~~~ 661 (824)
. ..+++. ++.|||..++. ...+.+||+....-..+... +.... -.+++.- + +.||+....
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--- 216 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--- 216 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---
T ss_pred CCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---
Confidence 2 233443 68999997532 25788999765544433211 11111 2233333 4 899998764
Q ss_pred CccceEEEEeCCCCCEEEC-CCCCCCCcceEEEEECCEEEEEccCCC--CceeeEEEEEECCCCcEEec
Q psy17309 662 SRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDDMIFAIGGFNG--VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~--~~~~~~v~~yd~~~~~W~~~ 727 (824)
...|.+||+.+.+.... ..........+++...+.+|...|..- ......+.++|+.+.+....
T Consensus 217 --~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 217 --NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp --TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred --CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 25799999986665443 211222222344444577777766422 11234688999888766543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=94.64 E-value=1.3 Score=47.53 Aligned_cols=202 Identities=11% Similarity=-0.043 Sum_probs=108.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
+.++...+...+......++.+|.....-..+..-.. .-.+.+. -+++.+++++.++. ...++++|+.+.+...+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~--~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS--CEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC--cceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEe
Confidence 3444444432222223678999988765544432211 1122222 25666666654321 25899999999887766
Q ss_pred cCCCcccCceEEEEE-CCE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 587 APMNVERSDASATTL-QGK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
...+. ...+.+.. +|+ |++.+..++ ...++.+|+.+.+...+...+ ........ +++.+++++....
T Consensus 219 ~~~~~--~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~g- 289 (415)
T 2hqs_A 219 ASFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQAG- 289 (415)
T ss_dssp ECCSS--CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTTS-
T ss_pred ecCCC--cccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECCCC-
Confidence 54332 11222222 454 554544332 246999999988876664322 12222333 5664555442211
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
...++.+|+.+.+-..+... .. ....+.+ +++.+++++.+.. ...++++|+++.+...+.
T Consensus 290 -~~~i~~~d~~~~~~~~l~~~--~~-~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 290 -RPQVYKVNINGGAPQRITWE--GS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp -SCEEEEEETTSSCCEECCCS--SS-EEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECC
T ss_pred -CcEEEEEECCCCCEEEEecC--CC-cccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEec
Confidence 34789999988765554321 11 1222233 5665555554322 247999999998887664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=5.4 Score=46.20 Aligned_cols=253 Identities=9% Similarity=-0.087 Sum_probs=129.9
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCC-----------cccceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGN-----------EYYNSCR 527 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~-----------~~~~~~~ 527 (824)
+..++++....+.....++.+|..+++........ .. ..+.+.. +++.++++..+.. .....++
T Consensus 136 g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 34455544333334457899999998876532111 01 1123333 4444444443322 2245689
Q ss_pred EEECCCCceE--EeccCC-CCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCC------C--cEEeecCCCcccCc
Q psy17309 528 CFNAVTKVWK--EIAPMN-FKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTE------N--QWSLIAPMNVERSD 595 (824)
Q Consensus 528 ~yd~~~~~W~--~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t------~--~W~~~~~~p~~r~~ 595 (824)
.++..+.+.. .+...+ .+........ -+++..+++...+....+.++.+|..+ . .+..+..-.....
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~- 290 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY- 290 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-
T ss_pred EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-
Confidence 9999887632 222222 1222233332 255544444332222257899999876 4 5776654322221
Q ss_pred eEEEEECCEEEEEcccCCCCcCCceEEEeCCCC---eEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEe
Q psy17309 596 ASATTLQGKIYITGGFNGHNCLNSCEVYDPECN---QWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYN 671 (824)
Q Consensus 596 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd 671 (824)
.....-++.||+.+..+. ....+..+|..+. .|+.+.+-.....-...+.. ++.+++....++ ...++++|
T Consensus 291 ~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l~~~~ 365 (710)
T 2xdw_A 291 DYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV---KNTLQLHD 365 (710)
T ss_dssp EEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT---EEEEEEEE
T ss_pred EEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC---EEEEEEEE
Confidence 122233678888765432 2457889998775 48877542221222234445 678887765432 35688999
Q ss_pred CCCCC-EEECCCCCCCCcceEEEEE--CC-EEEEEccCCCCceeeEEEEEECCCCc--EEec
Q psy17309 672 PVTKT-WSQVPDMYNPRSNFAIEVI--DD-MIFAIGGFNGVTTIYHVECYDEKTDE--WYEA 727 (824)
Q Consensus 672 ~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 727 (824)
+.+.+ ...+. ++ ......+.. ++ .+++.... . ..-..++.||..+++ .+.+
T Consensus 366 ~~~g~~~~~l~-~~--~~~v~~~~~s~d~~~l~~~~ss-~-~~P~~i~~~d~~tg~~~~~~l 422 (710)
T 2xdw_A 366 LATGALLKIFP-LE--VGSVVGYSGQKKDTEIFYQFTS-F-LSPGIIYHCDLTKEELEPRVF 422 (710)
T ss_dssp TTTCCEEEEEC-CC--SSEEEEEECCTTCSEEEEEEEC-S-SCCCEEEEEETTSSSCCCEEE
T ss_pred CCCCCEEEecC-CC--CceEEEEecCCCCCEEEEEEeC-C-CCCCEEEEEECCCCccceEEe
Confidence 85554 44443 22 111222222 33 45444221 1 122478999998877 6554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.46 Score=50.30 Aligned_cols=195 Identities=9% Similarity=-0.062 Sum_probs=97.0
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCE-EEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceE-EE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDV-IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDAS-AT 599 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~-~~ 599 (824)
..++.+|+.+++...+... .......+.. ++. |++............++.+|+.+..+..+.. ..+..... .+
T Consensus 168 ~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEE
T ss_pred ceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceE
Confidence 4577788887776655432 1222222222 344 4444321111112578999998887776654 21111111 22
Q ss_pred EE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCC-----------CCccce
Q psy17309 600 TL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNG-----------MSRMCN 666 (824)
Q Consensus 600 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~-----------~~~~~~ 666 (824)
.. +++.+++.+.........++.+|+.+++...+...+. .. .+..- +++++++++... ......
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 22 5553333333222222349999999888776654442 11 22333 777777654321 012367
Q ss_pred EEEEeCCCCCEEECCCCCCC----------CcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 667 GEKYNPVTKTWSQVPDMYNP----------RSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 667 v~~yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
++.+|+.+.+...+...+.. ........-++ +|++.....+ ...++.+|..+..++.+
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIYIADVPESYKHLE 390 (396)
T ss_dssp EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEEEEECCTTCC---
T ss_pred EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEEEEEEcccccccc
Confidence 99999988765554322210 01111222245 4555443322 23688999888877665
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.83 Score=47.98 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCEEEEEeecCCCcc-cceEEEEECCCCceEEeccCCC----Ccc-eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFDGNEY-YNSCRCFNAVTKVWKEIAPMNF----KRC-YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~~~----~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
++.+++.|+.+.... -..++.|+..+..= ...+.. ... -.+++.. ++.++ .|+.+ ..+.+||+.+
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~--~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d-----g~v~lWd~~~ 124 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAP--NESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS-----GAVELWEILE 124 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC-----CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT-----SCEEEC----
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCc--ceeEecccCCCCCCEEEEEEcCCCCEE-EEECC-----CEEEEeeccc
Confidence 778888887543221 24577777655321 111111 111 1233444 45544 45533 3578888877
Q ss_pred CcEEeecCCC---cccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--C-CEEE
Q psy17309 581 NQWSLIAPMN---VERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--H-ECIY 653 (824)
Q Consensus 581 ~~W~~~~~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iy 653 (824)
++-....... ....-.+++.. +++.++.|+.+ ..+..||..+.+-... +........++.+ + +.++
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCE
T ss_pred cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCcee
Confidence 6532222111 11111122222 67777888765 3688899988764332 2221222223333 3 3577
Q ss_pred EEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 654 VIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
+.||.+ ..+.+||+.+.+-..............++.+ ++++++.|+.++ .+.+||+.+.
T Consensus 198 ~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~ 259 (357)
T 4g56_B 198 LSCGED-----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNP 259 (357)
T ss_dssp EEEETT-----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCG
T ss_pred eeeccC-----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCC
Confidence 777754 4578888877653322222222222233333 467888887655 5788888764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=94.57 E-value=1.7 Score=49.15 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=114.4
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCC----c-EEEcccCCCCCCCc-eeEEEEE---CCEEEEEeecCCCcccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRAD----R-WVKIDQVDPMGPRA-YHGTAVI---GYNIYVIGGFDGNEYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~----~-W~~~~~~~~~~~r~-~~~~~~~---~~~lyv~GG~~~~~~~~~~~~y 529 (824)
.+..+++|+ ...+..||..+. + -..+.. .... -.+++.. ++.+++.|+.+ ..+..|
T Consensus 29 dg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~----h~~~~v~~~~~sp~~~~~~l~s~~~d-----g~v~vw 93 (615)
T 1pgu_A 29 TTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTG----HGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVW 93 (615)
T ss_dssp TTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECT----TTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEE
T ss_pred CCCEEEEec------CCeEEEEECCCCCCccccceEEec----CCCceEEEEEECcCCCCCEEEEecCC-----CEEEEE
Confidence 344555555 236888988765 2 222211 1111 2233332 45677777754 357788
Q ss_pred ECCCC------ceEEeccCCCC-cceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 530 NAVTK------VWKEIAPMNFK-RCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 530 d~~~~------~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
|..++ ....+..+... ..-.+++.. ++..++.+|.+.. ....++.+|... .+..+.........+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~----~~~~~~~~~~~v~~~~~ 168 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGN----SLGEVSGHSQRINACHL 168 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCC----EEEECCSCSSCEEEEEE
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECCC----cceeeecCCccEEEEEE
Confidence 87644 33333222211 112223222 5666666664322 234677777322 11122222222222222
Q ss_pred --CCE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCc---ceEEEEE--C-CEEEEEecCCCCCccceEEEEeC
Q psy17309 602 --QGK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS---GVSCIAY--H-ECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 602 --~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~---~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
++. +++.|+.+ ..+..||..+.+-... +..... ...++.+ + +..++.|+.+ ..+.+||.
T Consensus 169 ~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~ 236 (615)
T 1pgu_A 169 KQSRPMRSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDG 236 (615)
T ss_dssp CSSSSCEEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEET
T ss_pred CCCCCcEEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC-----CeEEEEEC
Confidence 333 67777654 4688888776553322 221111 2333333 4 6777777754 46889998
Q ss_pred CCCCEEECC-CC--CCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 673 VTKTWSQVP-DM--YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 673 ~~~~W~~~~-~~--p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.+.+....- .. .....-.+++..++..++.|+.++ .+.+||..+.+-..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCVQ 288 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCC-----cEEEEECCCCcEEE
Confidence 876643322 10 111111122222788888887654 68889988765443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.74 Score=53.78 Aligned_cols=252 Identities=7% Similarity=-0.111 Sum_probs=124.1
Q ss_pred CCEEEEEccC-CCCCCCceEEEEECCCCcEEEcccCCCCCC--------------C------c-eeEEEEE-CCEEEEEe
Q psy17309 459 HEILFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPMGP--------------R------A-YHGTAVI-GYNIYVIG 515 (824)
Q Consensus 459 ~~~l~~~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~--------------r------~-~~~~~~~-~~~lyv~G 515 (824)
.+..+++++. ..+.....++.+|..+.+...+.......+ | . -.+.+.. +++.++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 3445555554 333334579999999888766422111000 0 0 1122222 55555555
Q ss_pred ecCCCcccceEEEEECCCC---ceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc
Q psy17309 516 GFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE 592 (824)
Q Consensus 516 G~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 592 (824)
+. ..++.+|..++ .-..+..... ........-+|+..+++.. ..++++|+.+.+...+......
T Consensus 127 ~~------~~i~~~d~~~~~~~~~~~l~~~~~-~~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 127 LG------GELYLYDLKQEGKAAVRQLTHGEG-FATDAKLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ET------TEEEEEESSSCSTTSCCBCCCSSS-CEEEEEECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCCS
T ss_pred eC------CcEEEEECCCCCcceEEEcccCCc-ccccccCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCcc
Confidence 42 68999999887 5444332211 1111122236665555541 3799999998877665432211
Q ss_pred cC---------------ceEEEE-ECCEEEEEcccCCC----------------------------CcCCceEEEeCCC-
Q psy17309 593 RS---------------DASATT-LQGKIYITGGFNGH----------------------------NCLNSCEVYDPEC- 627 (824)
Q Consensus 593 r~---------------~~~~~~-~~~~lyv~GG~~~~----------------------------~~~~~v~~yd~~~- 627 (824)
.. ..+.+. -+|+.++++..++. .....++.+|..+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 00 011222 25554444433221 0122678889887
Q ss_pred CeEEEcCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCC----CcceEEEEECCEEEEE
Q psy17309 628 NQWTLIEPMRHRRSG-VSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP----RSNFAIEVIDDMIFAI 702 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~i~v~ 702 (824)
.+-..+...+..... ...+.-+|+..+++..+.......++.+|+.+.+...+...... .....+..-++++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred CceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 765544322111111 11111344444444332223356899999998877665321111 1111122236777777
Q ss_pred ccCCCCceeeEEEEEECCCCcEEec
Q psy17309 703 GGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
++.++ ...++.+|.+.. ...+
T Consensus 354 ~~~~g---~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 354 SERTG---FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp ECTTS---SCEEEEECSSSC-EEES
T ss_pred ecCCC---ccEEEEEcCCCC-eeee
Confidence 65543 246888887665 5555
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.54 E-value=2.9 Score=42.87 Aligned_cols=219 Identities=8% Similarity=-0.012 Sum_probs=109.0
Q ss_pred ceEEEEECCCCc----EEEcccCCCCCCCceeEEEEE-CCE-EEEEeecCCCcccceEEEEEC-CCCceEEeccCCCCcc
Q psy17309 475 DFVETYDTRADR----WVKIDQVDPMGPRAYHGTAVI-GYN-IYVIGGFDGNEYYNSCRCFNA-VTKVWKEIAPMNFKRC 547 (824)
Q Consensus 475 ~~~~~yd~~~~~----W~~~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~r~ 547 (824)
..+..||..+.+ ...+. .....-.+++.. ++. .++.|+.+ ..+..||. .+++...+...+....
T Consensus 33 ~~v~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~ 103 (342)
T 1yfq_A 33 GSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLG 103 (342)
T ss_dssp SEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSC
T ss_pred CeEEEEEeCCCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCC-----CeEEEEEeccCCceEeccccCCCCc
Confidence 457777766655 32211 112222334433 566 77777754 46899999 8887765554111122
Q ss_pred eEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc-------EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 548 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ-------WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-------W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-.+++...+..++.|+.+ ..+..||+.+.. .+.+..+.....-.+++...+. ++.|+.+ ..+
T Consensus 104 v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d-----~~i 172 (342)
T 1yfq_A 104 ICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN-----SQV 172 (342)
T ss_dssp EEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST-----TEE
T ss_pred eEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC-----CeE
Confidence 223333335566666643 467888876400 2223333333233334444555 5555543 468
Q ss_pred EEEeCCC-Ce--EEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC--------CEEECCCCC--C
Q psy17309 621 EVYDPEC-NQ--WTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTK--------TWSQVPDMY--N 685 (824)
Q Consensus 621 ~~yd~~~-~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p--~ 685 (824)
..||..+ .. ...... +....-.+++.. ++..++.|+.+ ..+.+||.... ......... .
T Consensus 173 ~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T 1yfq_A 173 QWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID-----GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp EEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT-----SEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred EEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC-----CcEEEEEEcCCCcccccccceeeeccccccc
Confidence 8899877 32 222211 111112222333 56777777753 34555554432 111111100 0
Q ss_pred ---CCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 686 ---PRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 686 ---~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.......+.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 247 ~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~ 285 (342)
T 1yfq_A 247 DTNLAYPVNSIEFSPRHKFLYTAGSDG-----IISCWNLQTRKK 285 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTS-----CEEEEETTTTEE
T ss_pred ccccceeEEEEEEcCCCCEEEEecCCc-----eEEEEcCccHhH
Confidence 0112222333 677788887655 588999887654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.53 E-value=2.9 Score=43.95 Aligned_cols=232 Identities=7% Similarity=-0.069 Sum_probs=115.6
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..++.+|..+.+...+..... ......... +++.+++.... ..++.+|+.+++-..+...+... .
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~---~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~------~ 125 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKG---DNTFGGFISTDERAFFYVKNE-----LNLMKVDLETLEEQVIYTVDEEW------K 125 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSC---BCTTTCEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTE------E
T ss_pred ceEEEEECCCCcEEEeecCCC---CccccceECCCCCEEEEEEcC-----CcEEEEECCCCCcEEEEeccccc------C
Confidence 467889998888776532211 111111212 44433344322 26899998887765554433221 1
Q ss_pred ECCEEEEEec-------------cc--C----------CCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCE-E
Q psy17309 554 HQDVIYAMGG-------------YN--G----------QRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGK-I 605 (824)
Q Consensus 554 ~~~~iyv~GG-------------~~--~----------~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-l 605 (824)
.++..+++.. .. + ......++.+|+.+.+...+... .......... +++ |
T Consensus 126 ~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l 203 (396)
T 3c5m_A 126 GYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTV 203 (396)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEE
T ss_pred CCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--CcccccceECCCCCCEE
Confidence 1111111110 00 0 02235789999998887666432 1211222222 344 4
Q ss_pred EEEcccCC-CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 606 YITGGFNG-HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 606 yv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
+.... .. ......++.+|..+..+..+.. ..+........+ +++.+++...........++++|+.+.+...+..
T Consensus 204 ~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 204 GFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp EEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE
T ss_pred EEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee
Confidence 44432 11 1122579999998888777654 211222222222 5553333332211112349999999888776654
Q ss_pred CCCCCcceEEEEE-CCEEEEEccCCC-----------CceeeEEEEEECCCCcEEec
Q psy17309 683 MYNPRSNFAIEVI-DDMIFAIGGFNG-----------VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 683 ~p~~r~~~~~~~~-~~~i~v~GG~~~-----------~~~~~~v~~yd~~~~~W~~~ 727 (824)
.+. .. ....- +++++++++.+. ......++++|+.+.+...+
T Consensus 282 ~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 282 MPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp CCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred CCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 432 11 22233 677776654221 01224799999988776554
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=2.4 Score=40.46 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=83.7
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEE--e----ccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE--I----APMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (824)
+++..++.+|+|=| +.+|+++.....+.. + +.+|. ...+ +... ++++|+|-| +.+|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDA-a~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RIDA-AYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCCE-EEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-CccE-EEEeccCCcEEEEcc-------CEEE
Confidence 45557899999987 668888766544432 1 23332 2222 2223 589999988 6788
Q ss_pred EEeCCCCcE---EeecC--CCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----c----CCCC
Q psy17309 575 KYNYTENQW---SLIAP--MNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----I----EPMR 637 (824)
Q Consensus 575 ~yd~~t~~W---~~~~~--~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p 637 (824)
+|+..+-.- +.+.. +|..-...-+|.. ++++|+|-| +..++||..+++-.. + +.+|
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~Gip 164 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG 164 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCCCCC
Confidence 887432211 12222 3322123334443 489999987 567899987654221 1 1223
Q ss_pred CCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 638 HRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 638 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
. .--++...++++|++-| +..++||..+.+
T Consensus 165 ~--~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~ 194 (207)
T 1pex_A 165 D--KVDAVYEKNGYIYFFNG-------PIQFEYSIWSNR 194 (207)
T ss_dssp S--CCSEEEEETTEEEEEET-------TEEEEEETTTTE
T ss_pred C--CccEEEEcCCcEEEEEC-------CEEEEEeCCccE
Confidence 2 22344456999999988 578899987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=1.9 Score=48.28 Aligned_cols=238 Identities=9% Similarity=0.001 Sum_probs=119.9
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEEC--CCC
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNA--VTK 534 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~--~~~ 534 (824)
.+.+++.+.. ...+..+|..+.+-... ... ...-|++++. +..+|+.+. + +.+..||+ .+.
T Consensus 148 ~~~~~vs~~~-----d~~V~v~D~~t~~~~~~--i~~--g~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~ 212 (543)
T 1nir_A 148 PNLFSVTLRD-----AGQIALVDGDSKKIVKV--IDT--GYAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEP 212 (543)
T ss_dssp GGEEEEEEGG-----GTEEEEEETTTCCEEEE--EEC--STTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSC
T ss_pred CCEEEEEEcC-----CCeEEEEECCCceEEEE--Eec--CcccceEEECCCCCEEEEECC-C-----CeEEEEECcCCCC
Confidence 3566666542 35688899988765431 111 1124555444 456666653 1 67999999 555
Q ss_pred ceEEeccCCCCcceEEEEEE-----CC-EEEEEecccCCCCCCeEEEEeCCCCcEEe-ecC--C--------CcccCceE
Q psy17309 535 VWKEIAPMNFKRCYVSTAVH-----QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSL-IAP--M--------NVERSDAS 597 (824)
Q Consensus 535 ~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~--~--------p~~r~~~~ 597 (824)
+- +..++....-..++.. ++ .+|+.+-. .+.+.++|..+.+-.. ++. + |.+|....
T Consensus 213 ~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 213 TK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp EE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred cE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence 42 3333333223334443 45 45554322 2568888988765432 221 1 12222222
Q ss_pred EEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEeCCC
Q psy17309 598 ATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 598 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
+... ++.+|+.... ...+..+|..+.+-..+..++..+.-+..+.. +++ +|+.+.. .+.|.++|+.+
T Consensus 286 ~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~t 355 (543)
T 1nir_A 286 IASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKD 355 (543)
T ss_dssp EECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTT
T ss_pred EECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCC
Confidence 2222 4555555432 35788888876431111111222222233332 455 5555432 36788899988
Q ss_pred CCEEEC---CCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCC-----cEEeccCCCC
Q psy17309 675 KTWSQV---PDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTD-----EWYEATDMNI 732 (824)
Q Consensus 675 ~~W~~~---~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~ 732 (824)
.+-... ...|.+........- ++.+|+.+.... +.|-++|.++. .|+.+..++.
T Consensus 356 g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 356 RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred CeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 764332 233444333332222 378888865322 25778887762 3776655443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.42 E-value=5.3 Score=41.15 Aligned_cols=220 Identities=9% Similarity=0.106 Sum_probs=115.6
Q ss_pred EEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEE-E
Q psy17309 477 VETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAV-H 554 (824)
Q Consensus 477 ~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~ 554 (824)
++.-.-...+|..+............++...++.+|+.|.. ..+++-+-.-.+|+.+.... .+.....++. -
T Consensus 58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~ 131 (327)
T 2xbg_A 58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALG 131 (327)
T ss_dssp EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEE
T ss_pred EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEEC
Confidence 44443345689986432111122344555557888887631 23554333457899876432 2222334443 4
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEe-CCCCeEEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYD-PECNQWTL 632 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd-~~~~~W~~ 632 (824)
++.+|+.|.. ..+++-+=.-.+|+.+.... +...++++.. ++.+|++|- . ..+++-+ ....+|+.
T Consensus 132 ~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~-----G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 132 NGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-R-----GSFYSTWEPGQTAWEP 198 (327)
T ss_dssp TTEEEEEETT------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET-T-----SSEEEEECTTCSSCEE
T ss_pred CCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-C-----CcEEEEeCCCCCceeE
Confidence 6788887742 23554443457899885422 2233444443 566776652 2 2344433 22578998
Q ss_pred cCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCC-CCCEEECCC--CCCCCcceEEEEE-CCEEEEEccCCC
Q psy17309 633 IEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPV-TKTWSQVPD--MYNPRSNFAIEVI-DDMIFAIGGFNG 707 (824)
Q Consensus 633 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~--~p~~r~~~~~~~~-~~~i~v~GG~~~ 707 (824)
+.. +.+...+.++.. ++.+|+.+.. ..++..+.. ..+|+.+.. ++.....++++.. ++.+|++|+..
T Consensus 199 ~~~-~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g- 270 (327)
T 2xbg_A 199 HNR-TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG- 270 (327)
T ss_dssp EEC-CSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT-
T ss_pred CCC-CCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC-
Confidence 854 333344444433 6788887642 234454333 568988753 2332223333333 67888887632
Q ss_pred CceeeEEEEEECCCCcEEecc
Q psy17309 708 VTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+++-.-.-.+|+.+.
T Consensus 271 -----~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 271 -----ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp -----CEEEESSTTSSCEECG
T ss_pred -----eEEEeCCCCcccEEcC
Confidence 2333222357899885
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=2 Score=44.52 Aligned_cols=228 Identities=9% Similarity=0.047 Sum_probs=111.9
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
..++.|+.+ ..+..||..+.......... .....-.+++.. ++..++.|+.+ ..+..||..+.+....
T Consensus 55 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 55 NFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQI 123 (368)
T ss_dssp EEEEEEETT-----SEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred eEEEEECCC-----CcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceee
Confidence 666666642 45778887762221100000 011112233333 56666677654 4688999998876554
Q ss_pred ccCCCCcceEEEEE---ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCc
Q psy17309 540 APMNFKRCYVSTAV---HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNC 616 (824)
Q Consensus 540 ~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 616 (824)
..... .-.+++. .++.+++.|+.+ ..+..||..+.+-. ..+.......+.....+.+++.++ +
T Consensus 124 ~~~~~--~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~---- 189 (368)
T 3mmy_A 124 AQHDA--PVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPM--MVLQLPERCYCADVIYPMAVVATA-E---- 189 (368)
T ss_dssp EECSS--CEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCS--EEEECSSCEEEEEEETTEEEEEEG-G----
T ss_pred ccccC--ceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEE--EEEecCCCceEEEecCCeeEEEeC-C----
Confidence 33221 1223333 256777777754 46888998776421 112222223334444555554433 2
Q ss_pred CCceEEEeCCCCe--EEEcCCCCCCCcceEEEEECC----EEEEEecCCCCCccceEEEEeCCCCCE-----EECC--CC
Q psy17309 617 LNSCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHE----CIYVIGGFNGMSRMCNGEKYNPVTKTW-----SQVP--DM 683 (824)
Q Consensus 617 ~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~~--~~ 683 (824)
..+..||..... +..+...............+. ..++.|+.+ ..+.+||.....- .... ..
T Consensus 190 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 190 -RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp -GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred -CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeecc
Confidence 457788876543 333332221122222222222 236666643 4677888765421 1100 00
Q ss_pred --CCCCc----ceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 684 --YNPRS----NFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 684 --p~~r~----~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..... ....+.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~ 307 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-----RFSFWDKDARTK 307 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTS-----CEEEEETTTTEE
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCC-----eEEEEECCCCcE
Confidence 00000 1222233 677888888765 588999887643
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=1.1 Score=48.45 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=98.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEe--ccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI--APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+|+|-| +..|+||..+++.... +.+| .. -++....+++|+|-| +..++||+.+.+-..
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~--~i-DAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~ 220 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQG-------NQFLRFNPVSGEVPP 220 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEET-------TEEEEECTTTCCCCT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCC--cc-chheeeCCceEEEEC-------CEEEEEcCccCcccC
Confidence 578899988 6789999988765432 2222 22 244445799999988 678899987654211
Q ss_pred ------------ecCCC------------------cccCceEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeEE--
Q psy17309 586 ------------IAPMN------------------VERSDASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQWT-- 631 (824)
Q Consensus 586 ------------~~~~p------------------~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-- 631 (824)
++... .+.....++. .+|++|+|-| +..+++|...+.+.
T Consensus 221 gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 221 GYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGWHSW 293 (460)
T ss_dssp TCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCCCCE
T ss_pred CCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCcCcc
Confidence 11100 0111223333 3689999977 33455554332221
Q ss_pred Ec----CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC----------CCCCC--CcceEEEEE
Q psy17309 632 LI----EPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP----------DMYNP--RSNFAIEVI 695 (824)
Q Consensus 632 ~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----------~~p~~--r~~~~~~~~ 695 (824)
.+ +.+|.. --++...++++|+|=| +.+++|+.... .+.++ .+|.. ...-.++..
T Consensus 294 ~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~ 363 (460)
T 1qhu_A 294 PIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFV 363 (460)
T ss_dssp EGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEEC
T ss_pred chhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEE
Confidence 11 234433 2344456899999987 57888886531 22221 12222 112233332
Q ss_pred ---CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 696 ---DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 696 ---~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++++|++-|. ..|.||...
T Consensus 364 ~~~~~ktyfFkG~-------~ywryd~~~ 385 (460)
T 1qhu_A 364 CPGSSRLHIMAGR-------RLWWLDLKS 385 (460)
T ss_dssp CTTCCEEEEEETT-------EEEEEEGGG
T ss_pred eCCCCEEEEEECC-------EEEEEECCC
Confidence 6899999773 688898764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.73 Score=47.90 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=92.8
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCc-ccCceEEEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV-ERSDASATTL 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~ 601 (824)
-.++.+|..++++..+........-..++. -+++||+.+... ....+++||+.+.+++.+..... ...-..++..
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 347788888888876443221111112332 367788776421 12578999998888877654322 2222233333
Q ss_pred -CC-EEEEEcccCCCCcCCceEEEeCC-CCeEEEcCCC------CCCC----cceEEEEE-CCEEEEEecCCCCCccceE
Q psy17309 602 -QG-KIYITGGFNGHNCLNSCEVYDPE-CNQWTLIEPM------RHRR----SGVSCIAY-HECIYVIGGFNGMSRMCNG 667 (824)
Q Consensus 602 -~~-~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~------p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~v 667 (824)
++ .||+.+..+ ..+..||.. +.+...+... |.+| ..+.++.. ++++|+.+.. .+.+
T Consensus 95 pdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----~~~v 164 (347)
T 3hfq_A 95 EARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----SDKV 164 (347)
T ss_dssp TTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----TTEE
T ss_pred CCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----CCEE
Confidence 44 566654322 457778874 3344333211 1111 11222222 6777776543 2478
Q ss_pred EEEeCC-CCCEEECCC--CCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 668 EKYNPV-TKTWSQVPD--MYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 668 ~~yd~~-~~~W~~~~~--~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.+||+. +.+...+.. .+... ....+.+ +++ +|+.+..++ .-.++.++..+.+++.+
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~-~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGF-GPRHLVFSPDGQYAFLAGELSS---QIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTC-CEEEEEECTTSSEEEEEETTTT---EEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCC-CCceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCceEEe
Confidence 888887 555554321 11111 1112233 554 777654332 11344445546776544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.35 E-value=1.4 Score=46.84 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=118.3
Q ss_pred EEEEEccCCCC-----CCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCC
Q psy17309 461 ILFAIGGWSGG-----SPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTK 534 (824)
Q Consensus 461 ~l~~~GG~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~ 534 (824)
.+++.|..... .....+..||..+..-... .........-.+++.. ++.+++.|+.+ ..+..||..+.
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~vw~~~~~ 99 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASLQVDSKFNDLDWSHNNKIIAGALDN-----GSLELYSTNEA 99 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCCCCSSCEEEEEECSSSSCEEEEESS-----SCEEEECCSST
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEEecCCceEEEEECCCCCeEEEEccC-----CeEEEeecccc
Confidence 36677643321 2234578888776542110 1111112222233333 56666777654 35888888761
Q ss_pred --ceEEeccCCCCc-ceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCc------EE-eecCCC-cccCceEEEEE
Q psy17309 535 --VWKEIAPMNFKR-CYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQ------WS-LIAPMN-VERSDASATTL 601 (824)
Q Consensus 535 --~W~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~------W~-~~~~~p-~~r~~~~~~~~ 601 (824)
....+..+.... .-.+++.. ++.+++.|+.+ ..+.+||..+.. -. .+.... ....-.+++..
T Consensus 100 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 174 (416)
T 2pm9_A 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN 174 (416)
T ss_dssp TSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEEC
T ss_pred cccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeC
Confidence 111222222111 11223333 26777777754 457888887764 11 111111 11122223333
Q ss_pred -C-CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCC----CcceEEEEE--C-CEEEEEecCCCCCccceEEEEeC
Q psy17309 602 -Q-GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHR----RSGVSCIAY--H-ECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 602 -~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
+ +.+++.|+.+ ..+..||..+.+-...-..+.. ......+.+ + ..+++.|+.++. ...+.+||.
T Consensus 175 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~ 247 (416)
T 2pm9_A 175 QSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL 247 (416)
T ss_dssp SSCTTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred CCCCcEEEEEcCC-----CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence 3 5677777755 4688999988765443332211 222233333 3 357777775421 126778888
Q ss_pred CCCCEEECCCCC-CCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 673 VTKTWSQVPDMY-NPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 673 ~~~~W~~~~~~p-~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.+..- .+..+. ........+.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 248 ~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~ 297 (416)
T 2pm9_A 248 RNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQ 297 (416)
T ss_dssp TSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-----EEEEECSSSCCE
T ss_pred CCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCcc
Confidence 76431 111222 11122223333 678888888765 588898877643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.35 E-value=1.5 Score=51.37 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=110.2
Q ss_pred ceEEEEECCCCcEEEcccCCCC---CCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCC------CceE---Eec-
Q psy17309 475 DFVETYDTRADRWVKIDQVDPM---GPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVT------KVWK---EIA- 540 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~------~~W~---~~~- 540 (824)
..+.+||+.++++..+...... ....-.++... ++.|++. ... ..+++||+.+ ..+. ...
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig-T~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIS-TCL-----GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEE-ESS-----SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEE-ECC-----CceEEEccccccccCCcceeccccccc
Confidence 3688999999988775421111 11222333333 5677763 221 2377888653 1221 111
Q ss_pred --cCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-cCceEEEEE--CCEEEEEcccCCC
Q psy17309 541 --PMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-RSDASATTL--QGKIYITGGFNGH 614 (824)
Q Consensus 541 --~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~ 614 (824)
.++.. .-.++..- +|.|++.||.. .-+.+||+.+++++....-... .....+... +|.|++. ..
T Consensus 466 ~~~l~~~-~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~--- 535 (758)
T 3ott_A 466 HNGLSGM-FINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FH--- 535 (758)
T ss_dssp GGTCSCS-CEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ET---
T ss_pred ccccccc-eeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ec---
Confidence 12211 11222222 57899876642 3489999999999876421111 111122222 5788864 32
Q ss_pred CcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 615 NCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 615 ~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
.-+.+||+.+++++... .+|.. ...+++.-+|.|++... +.+.+||+++.+..... ++......++
T Consensus 536 ---~Gl~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~-~~~~~~~~~~ 603 (758)
T 3ott_A 536 ---GGVMRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQN-MTNKRFTSLL 603 (758)
T ss_dssp ---TEEEEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC---CCCCCSEEE
T ss_pred ---CceEEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEec-CCCCceeeeE
Confidence 24889999988876553 34432 22334445788988663 45889999998877643 3332222222
Q ss_pred EEE-CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 693 EVI-DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 693 ~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
... +|.||+ ||.+ -+-.|||+.
T Consensus 604 ~~~~~G~l~f-G~~~------Gl~~f~p~~ 626 (758)
T 3ott_A 604 FDPKEDCVYL-GGAD------GFGISHSNL 626 (758)
T ss_dssp EETTTTEEEE-ECBS------EEEEEEC--
T ss_pred EECCCCcEEE-ecCC------ceEEEChhh
Confidence 222 566654 5543 356778764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.30 E-value=3.2 Score=41.79 Aligned_cols=221 Identities=7% Similarity=-0.071 Sum_probs=116.1
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
.+++++.. ...+..||+.+. ...+... ...-.+++.. ++.+|+.... ...+.+||+.+++...+
T Consensus 41 ~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~----~~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 41 AVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP----SHHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESI 105 (296)
T ss_dssp EEEEEEGG-----GTEEEEEETTSC-EEEEESS----CSSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEE
T ss_pred EEEEEeCC-----CCEEEEEECCCC-eEEEECC----CCCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEE
Confidence 35555532 246889999887 5543221 1222344443 6677766531 25699999988887765
Q ss_pred ccCCCC----cceEEEEEECCEEEEE----eccc--------CCCCCCeEEEEeCCCCcEEeec-CCCcccCceEEEEE-
Q psy17309 540 APMNFK----RCYVSTAVHQDVIYAM----GGYN--------GQRRQNSVEKYNYTENQWSLIA-PMNVERSDASATTL- 601 (824)
Q Consensus 540 ~~~~~~----r~~~~~~~~~~~iyv~----GG~~--------~~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~- 601 (824)
...... +....++.-+|.+|+. |... .......++++|+. .+...+. .+..+ .+++..
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~ 181 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLP 181 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECC
Confidence 432111 1112223336789986 4311 01123579999988 5554442 22111 233332
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCC-CCeE-EE--cCCCCCCCcceEEEE-ECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPE-CNQW-TL--IEPMRHRRSGVSCIA-YHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W-~~--~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
++++++.+.. ...+++||+. +++. .. +-....... .+++. -+|+||+..+ ..|.+||+....
T Consensus 182 dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~ 248 (296)
T 3e5z_A 182 SGNLLVSDTG-----DNATHRYCLNARGETEYQGVHFTVEPGKT-DGLRVDAGGLIWASAG-------DGVHVLTPDGDE 248 (296)
T ss_dssp TSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEECCSSSCC-CSEEEBTTSCEEEEET-------TEEEEECTTSCE
T ss_pred CCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEeeCCCCCC-CeEEECCCCCEEEEcC-------CeEEEECCCCCE
Confidence 5666554432 2578889876 4444 11 111111111 12232 3688998872 578999998554
Q ss_pred EEECCCCCCCCcceEEEEE---C-CEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 677 WSQVPDMYNPRSNFAIEVI---D-DMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 677 W~~~~~~p~~r~~~~~~~~---~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
...+. .+.. ...+++ + +.||+... ..++.++++++.-
T Consensus 249 ~~~~~-~~~~---~~~~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 249 LGRVL-TPQT---TSNLCFGGPEGRTLYMTVS-------TEFWSIETNVRGL 289 (296)
T ss_dssp EEEEE-CSSC---CCEEEEESTTSCEEEEEET-------TEEEEEECSCCBC
T ss_pred EEEEE-CCCC---ceeEEEECCCCCEEEEEcC-------CeEEEEEcccccc
Confidence 44432 2222 222333 2 35777642 2688999888653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.26 E-value=6.4 Score=41.69 Aligned_cols=187 Identities=10% Similarity=0.109 Sum_probs=104.2
Q ss_pred eEEEEECCC--CceEEeccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC---Ccc--c-
Q psy17309 525 SCRCFNAVT--KVWKEIAPMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM---NVE--R- 593 (824)
Q Consensus 525 ~~~~yd~~~--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~--r- 593 (824)
.+++++... .+|....+......-++++.. .+.||+.+... . .-.-+++.+-...+|+.+... +.. +
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g-~-~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~ 109 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG-H-LGPTVFRSDDGGGNWTEATRPPAFNKAPEGE 109 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC---
T ss_pred ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC-C-CCccEEEeCCCCCCceECCccccCCCccccc
Confidence 367777655 689976432222233444443 46788865421 0 112577887778899987532 211 1
Q ss_pred ----Cce--EEEEE----CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC---CC--------------CCcceEEE
Q psy17309 594 ----SDA--SATTL----QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM---RH--------------RRSGVSCI 646 (824)
Q Consensus 594 ----~~~--~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~--------------~r~~~~~~ 646 (824)
... +++.- .+.||+.+. ...+++.+-...+|+.+... |. ....++++
T Consensus 110 ~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~ 183 (394)
T 3b7f_A 110 TGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSIL 183 (394)
T ss_dssp -CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEE
T ss_pred ccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEE
Confidence 011 23332 467877542 13477777777899987532 21 11223333
Q ss_pred EE---CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC------CCC-----CcceEEEEE-C--CEEEEEccCCCCc
Q psy17309 647 AY---HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM------YNP-----RSNFAIEVI-D--DMIFAIGGFNGVT 709 (824)
Q Consensus 647 ~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~------p~~-----r~~~~~~~~-~--~~i~v~GG~~~~~ 709 (824)
.. .+.||+..+. ..+++.+....+|+.+... |.+ ...+.++.. . +.||+..+
T Consensus 184 ~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 184 VDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp ECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred ECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 32 3578876542 3578888888999988532 211 122333333 1 66776432
Q ss_pred eeeEEEEEECCCCcEEeccC-CCC
Q psy17309 710 TIYHVECYDEKTDEWYEATD-MNI 732 (824)
Q Consensus 710 ~~~~v~~yd~~~~~W~~~~~-~p~ 732 (824)
..+++.+-...+|+.+.. +|.
T Consensus 253 --~gl~~s~D~G~tW~~~~~~l~~ 274 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIGDAMPR 274 (394)
T ss_dssp --TEEEEEETTTTEEECGGGGSCT
T ss_pred --CeEEEeCCCCCcceECCCCCCC
Confidence 247888888899999853 554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=1 Score=47.88 Aligned_cols=188 Identities=14% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++..++.|+.+ ..+..||..+.+-...-.-. ...-.+++.. ++..++.|+.+ ..+..||..+.+....
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLT 202 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeEEE
Confidence 66777777754 45889999887543221111 1112233332 55666666643 5688899988765432
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc-CCC----CCCCcceEEEEE--CCEEEEEec
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI-EPM----RHRRSGVSCIAY--HECIYVIGG 657 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~----p~~r~~~~~~~~--~~~iyv~GG 657 (824)
-.... ...+++.. ++++++.|+.+ ..+..||..+..-... ... ........++.+ +++.++.|+
T Consensus 203 ~~~~~--~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 203 LSIED--GVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp EECSS--CEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEcCC--CcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 22111 11222222 57788888765 3688899887654322 110 111112223333 577777887
Q ss_pred CCCCCccceEEEEeCCCCCEEECCCCCC----------CCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYN----------PRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.+ ..+..||..+..-......+. .......+.+ +++.++.|+.++ .+.+||..+.+
T Consensus 276 ~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~iwd~~~~~ 343 (393)
T 1erj_A 276 LD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-----GVLFWDKKSGN 343 (393)
T ss_dssp TT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-----EEEEEETTTCC
T ss_pred CC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCe
Confidence 54 467788876532111100000 0001111222 567777887665 68889987754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=94.22 E-value=1.7 Score=44.74 Aligned_cols=199 Identities=12% Similarity=0.008 Sum_probs=104.5
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe-
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL- 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~- 585 (824)
++.||+.+..+ ..+++||+.+++...+...+ ...-.+++.. ++.+|+.+... ......+++||+.+...+.
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEE
Confidence 56788776432 46999999998887654221 1222334433 67888875422 1122579999999887653
Q ss_pred ecCCCcccCceEEEEE-CCEEEEEcccC-CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecCCCC
Q psy17309 586 IAPMNVERSDASATTL-QGKIYITGGFN-GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HE-CIYVIGGFNGM 661 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~ 661 (824)
+........-..++.- ++++|+..... .......++++|+.+.+...+..- .....+.+.. ++ .||+....
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~--- 202 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT--- 202 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG---
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC---
Confidence 2322222222222222 67888864321 111235689999887766554210 0111222322 44 48877532
Q ss_pred CccceEEEEeCCC--CCEEECC-----CCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 662 SRMCNGEKYNPVT--KTWSQVP-----DMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 662 ~~~~~v~~yd~~~--~~W~~~~-----~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
...+++||+.+ .....+. ..+.. .......+ +++||+....+ ..+.+||++...-..
T Consensus 203 --~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~-----~~v~~~d~~g~~~~~ 268 (333)
T 2dg1_A 203 --ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQ 268 (333)
T ss_dssp --GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEE
T ss_pred --CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC-----CEEEEECCCCCEEEE
Confidence 25788999854 2332211 11111 11222333 57788875322 268889986544333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.81 Score=54.03 Aligned_cols=184 Identities=9% Similarity=0.053 Sum_probs=95.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++..+++|+.+ ..+..||..+++....-...... -.+++.. ++..+++||.+ ..+.+||..+.+....
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVVD 92 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEecCCCc-EEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE
Confidence 34555666643 46889998887643322211111 1223332 56677777743 5788999888765332
Q ss_pred cCCCcccCce-EEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcce-EEEEE--CCEEEEEecCCC
Q psy17309 587 APMNVERSDA-SATTL-QGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGV-SCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 587 ~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~ 660 (824)
- ....... +++.. ++..++.|+.+ ..+..||..++ ..... +....... +++.. ++..++.|+.+
T Consensus 93 ~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d- 162 (814)
T 3mkq_A 93 F--EAHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD- 162 (814)
T ss_dssp E--ECCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT-
T ss_pred E--ecCCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC-
Confidence 1 1111112 22222 55566666654 46888888765 32221 11111122 22333 46677777754
Q ss_pred CCccceEEEEeCCCCC--EEECCCCCCCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 661 MSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+.+||..+.+ ...... .......++.. ++..+++|+.++ .+.+||..+.+
T Consensus 163 ----g~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~ 219 (814)
T 3mkq_A 163 ----RTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDL-----TIKIWDYQTKS 219 (814)
T ss_dssp ----SEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTS-----EEEEEETTTTE
T ss_pred ----CeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCc
Confidence 468889986543 222111 11111222222 677888887655 57888877654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.14 E-value=3.9 Score=47.32 Aligned_cols=246 Identities=7% Similarity=-0.003 Sum_probs=126.1
Q ss_pred CCceEEEEECCCCcEEEcccCC-CCCC-CceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce
Q psy17309 473 PTDFVETYDTRADRWVKIDQVD-PMGP-RAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 548 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~-~~~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 548 (824)
....++..+.....|..+.... +... ........+ +++.++++-..++.....++.+|..+++......++....
T Consensus 92 ~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~- 170 (695)
T 2bkl_A 92 EKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY- 170 (695)
T ss_dssp SSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-
T ss_pred eEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-
Confidence 3456777777666676642211 1101 111222222 5665555543333334689999999987641112221111
Q ss_pred EEEEE-ECCEEEEEecccCC--------CCCCeEEEEeCCCCcE--EeecCCCcc-cCceEEEEE-CCEEEEEcccCCCC
Q psy17309 549 VSTAV-HQDVIYAMGGYNGQ--------RRQNSVEKYNYTENQW--SLIAPMNVE-RSDASATTL-QGKIYITGGFNGHN 615 (824)
Q Consensus 549 ~~~~~-~~~~iyv~GG~~~~--------~~~~~~~~yd~~t~~W--~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~ 615 (824)
...+. -+|+.++++..+.. .....+++++..+..- ..+...+.. ....+.... +|+..+++..++.
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~- 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW- 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence 22222 26666666654332 2345699999887652 223222222 222222222 5554444443321
Q ss_pred cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC---EEECCCCCCCCcceEE
Q psy17309 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT---WSQVPDMYNPRSNFAI 692 (824)
Q Consensus 616 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r~~~~~ 692 (824)
....++.+|..+..|+.+..-.... ...+..+|.+|+....+ .....++.+|+.+.. |+.+-+......-.++
T Consensus 250 ~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 2356777887777787775422222 22233566666654322 224678999987654 8777432111222334
Q ss_pred EEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 693 EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 693 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
...+++|++....++ ...++++|+....-..+
T Consensus 326 ~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 326 SIVGGHLSLEYLKDA---TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEETTEEEEEEEETT---EEEEEEEETTCCEEEEC
T ss_pred EEECCEEEEEEEECC---EEEEEEEeCCCCeeEEe
Confidence 445889888876544 34688888765544333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.76 Score=48.97 Aligned_cols=147 Identities=10% Similarity=0.069 Sum_probs=74.9
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCC-----CcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF-----KRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
+.+++.|+.+ ..+..||..+.+-...-..+. ...-.+++.. + ..+++.|+.++. ...+.+||..+.
T Consensus 178 ~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~ 250 (416)
T 2pm9_A 178 AHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNA 250 (416)
T ss_dssp TTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTST
T ss_pred CcEEEEEcCC-----CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCC
Confidence 5677777754 458999998876543322221 1122233333 2 357777765431 125778888774
Q ss_pred cEEeecCCC-cccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc-CCCCCCCcceEEEEE-CC-EEEE
Q psy17309 582 QWSLIAPMN-VERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI-EPMRHRRSGVSCIAY-HE-CIYV 654 (824)
Q Consensus 582 ~W~~~~~~p-~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~-~iyv 654 (824)
.- .+..+. ........+.+ ++.+++.|+.+ ..+..||..+.+-... .....+. .+++.. ++ .+++
T Consensus 251 ~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 251 NT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFPARGNWC--FKTKFAPEAPDLFA 322 (416)
T ss_dssp TS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEEEEECSSSCC--CCEEECTTCTTEEE
T ss_pred CC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccceeecCCCCce--EEEEECCCCCCEEE
Confidence 31 112222 11122222222 57777888765 3588899877653221 1111111 112222 44 6777
Q ss_pred EecCCCCCccceEEEEeCCCC
Q psy17309 655 IGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~ 675 (824)
.|+.+ ..+.+||..+.
T Consensus 323 s~~~d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 323 CASFD-----NKIEVQTLQNL 338 (416)
T ss_dssp ECCSS-----SEEEEEESCCC
T ss_pred EEecC-----CcEEEEEccCC
Confidence 77754 35667776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=6.4 Score=45.54 Aligned_cols=247 Identities=7% Similarity=-0.097 Sum_probs=125.5
Q ss_pred CCceEEEEECCCCcEEEcccC-CCCCCC-ceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce
Q psy17309 473 PTDFVETYDTRADRWVKIDQV-DPMGPR-AYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 548 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~-~~~~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 548 (824)
....++..+.....|..+-.. .+.... ........ +++.++++...++.....++.+|..+++........ ...
T Consensus 96 ~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~- 173 (710)
T 2xdw_A 96 NQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKF- 173 (710)
T ss_dssp SSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECS-
T ss_pred eEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-ccc-
Confidence 344566776666666543111 111111 11222222 555555554333333347999999999876542111 111
Q ss_pred EEEEEE-CCEEEEEecccCC-----------CCCCeEEEEeCCCCcEE--eecCCC-cccCceEEEEE-CCEEEEEcccC
Q psy17309 549 VSTAVH-QDVIYAMGGYNGQ-----------RRQNSVEKYNYTENQWS--LIAPMN-VERSDASATTL-QGKIYITGGFN 612 (824)
Q Consensus 549 ~~~~~~-~~~iyv~GG~~~~-----------~~~~~~~~yd~~t~~W~--~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~ 612 (824)
..++.. +++.++++..... .....++++++.+.+.+ .+...+ .+......... +|+..+++...
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 253 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE 253 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence 123333 5554444443322 22456899998887632 221222 12222233332 55544444332
Q ss_pred CCCcCCceEEEeCCC------C--eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCC---CEEECC
Q psy17309 613 GHNCLNSCEVYDPEC------N--QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK---TWSQVP 681 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~------~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~ 681 (824)
+....+.++.+|..+ . .+..+..-.... ......-++.||+.+..+ .....++.+|+.+. .|+.+.
T Consensus 254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEE
T ss_pred cCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceecc
Confidence 222246889999876 4 577765422222 122233467788887543 22457899998775 488774
Q ss_pred CCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCc-EEec
Q psy17309 682 DMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDE-WYEA 727 (824)
Q Consensus 682 ~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~ 727 (824)
+-.....-.+++.. ++++++....++ ...++++|+.+++ ...+
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYLHDV---KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEEETT---EEEEEEEETTTCCEEEEE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEEECC---EEEEEEEECCCCCEEEec
Confidence 32211122334445 778888765543 3468899985554 3443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=4.9 Score=43.41 Aligned_cols=149 Identities=11% Similarity=-0.034 Sum_probs=76.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECC--CCceE-EeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAV--TKVWK-EIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
+..|++.|+.+ ..+..||.. +++.. .+.....+..-.+++.. ++..++.|+. ...++.++..+...
T Consensus 114 ~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 114 ESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-----FGDVYSIDINSIPE 183 (450)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTSCCC
T ss_pred CCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-----CCcEEEEecCCccc
Confidence 34556777644 457888877 54432 22111111111223332 5666677764 25678888766543
Q ss_pred Ee--ecCCCcccCce-EEEE-EC---CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEE
Q psy17309 584 SL--IAPMNVERSDA-SATT-LQ---GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVI 655 (824)
Q Consensus 584 ~~--~~~~p~~r~~~-~~~~-~~---~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~ 655 (824)
.. ...+....... +++. -+ +++++.|+.+ ..+..||..+.+....- +.........+.+ ++++++.
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~~l~s 257 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDYLLLS 257 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTTEEEE
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeee-ecCCCCceEEEEECCCCEEEE
Confidence 21 11121111111 2222 26 7788888765 46888888766533210 1111111122222 7778888
Q ss_pred ecCCCCCccceEEEEeCCCCCE
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKTW 677 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W 677 (824)
|+.+ ..+.+||..+.+-
T Consensus 258 ~~~d-----~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 258 AGGD-----DKIFAWDWKTGKN 274 (450)
T ss_dssp EESS-----SEEEEEETTTCCE
T ss_pred EeCC-----CeEEEEECCCCcE
Confidence 8754 4788999887664
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.88 E-value=2.7 Score=39.63 Aligned_cols=140 Identities=7% Similarity=0.043 Sum_probs=82.6
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCC--cEEe--e----cCCCcccCceEEEEE---CCEEEEEcccCCCCcCCc
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSL--I----APMNVERSDASATTL---QGKIYITGGFNGHNCLNS 619 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~--~----~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~ 619 (824)
++..+|++|+|=| +.+|+++.... .... + +.+|.. .-+|.. ++++|+|-| +.
T Consensus 12 i~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~---IDAa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 12 IAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET-------TE
T ss_pred EEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC---ccEEEEECCCCeEEEEeC-------CE
Confidence 4557999999988 67888887652 2221 1 345542 223332 688999987 45
Q ss_pred eEEEeCCCCe-EEEcC--CCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC----CCCCC
Q psy17309 620 CEVYDPECNQ-WTLIE--PMRHR--RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV----PDMYN 685 (824)
Q Consensus 620 v~~yd~~~~~-W~~~~--~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~p~ 685 (824)
.++|+..+.. =..+. .+|.. ...++....++++|++-| +..++||..+++=. .+ +.+|
T Consensus 75 yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp- 146 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVP- 146 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSC-
T ss_pred EEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCCC-
Confidence 6777654211 11122 23331 233333323689999988 57899998764311 11 1222
Q ss_pred CCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 686 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..--++...++++|++-|. ..+.||..+.+
T Consensus 147 -~~idaa~~~~g~~Yffkg~-------~y~~~~~~~~~ 176 (195)
T 1itv_A 147 -LDTHDVFQFREKAYFCQDR-------FYWRVSSRSEL 176 (195)
T ss_dssp -SSCSEEEEETTEEEEEETT-------EEEEEECCTTC
T ss_pred -CCCCEEEEeCCeEEEEeCC-------EEEEEECCccE
Confidence 2234555668999999764 68889987654
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.02 Score=48.58 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=46.6
Q ss_pred eeEEeeecccchhhhheeecccceecCHh-hHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 247 SVEKYNYTENQDKIEEKKLFERKLHITED-NVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 247 ~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~-~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
++-+ |-++..|+.||+|+.+|++.+..+ ....+++-|++|+++.|++.|.+-|.+
T Consensus 51 ~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 51 AYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp CEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3433 678999999999999999988654 358899999999999999999987754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=93.84 E-value=1 Score=46.42 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=78.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+|+.++.+ ..++++|+.+++....-+.+.....+.++.. ++ .+|+.+.. ...+.+||+.+.+-..
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEEE
Confidence 56778877643 5799999998876543333321012233333 44 57777642 3579999999887543
Q ss_pred ecCCCc-----ccCceEEEEE-CC-EEEEEccc---CCC---CcCCceEEEeCCCCeEEE-cCCCCCCCcceEEEE-ECC
Q psy17309 586 IAPMNV-----ERSDASATTL-QG-KIYITGGF---NGH---NCLNSCEVYDPECNQWTL-IEPMRHRRSGVSCIA-YHE 650 (824)
Q Consensus 586 ~~~~p~-----~r~~~~~~~~-~~-~lyv~GG~---~~~---~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~ 650 (824)
.-..+. ......++.. ++ .+|+.+.. ... .....+.+||+.+++-.. +...+.++...+++. -++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 159 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence 322221 1112333333 44 55554421 000 012578899987743111 111111222222222 366
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
++|+.++ ++.++|+.+.+-.
T Consensus 160 ~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 160 SLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp CEEEESS--------SEEEECTTTCCEE
T ss_pred cEEEccC--------cEEEEeCCCCcee
Confidence 7777432 3888888776543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.82 E-value=1.5 Score=44.80 Aligned_cols=140 Identities=16% Similarity=0.063 Sum_probs=72.1
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCC-ceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC----cc
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPR-AYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK----RC 547 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~ 547 (824)
..+..+|+.+.+.... ...+... ..+.++.. +..+|+.++. ...++.+|+.+.+-...-..+.+ ..
T Consensus 11 ~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKV--ITIADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp TEEEEEETTTTEEEEE--EECTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred CeEEEEECCCCcEEEE--EEcCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 5688899988765431 1111100 11223333 3467777642 25699999988775432222110 01
Q ss_pred eEEEEEE-CC-EEEEEeccc---CCC---CCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEcccCCCCcC
Q psy17309 548 YVSTAVH-QD-VIYAMGGYN---GQR---RQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGFNGHNCL 617 (824)
Q Consensus 548 ~~~~~~~-~~-~iyv~GG~~---~~~---~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~ 617 (824)
-..++.. ++ .+|+..... ... ....+.+||+.+.+....-+.+ .....++.. ++ .||+.+
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-------- 153 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG-------- 153 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES--------
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC--------
Confidence 1123332 34 677764211 011 2368999999887654322222 222233333 44 466652
Q ss_pred CceEEEeCCCCeEE
Q psy17309 618 NSCEVYDPECNQWT 631 (824)
Q Consensus 618 ~~v~~yd~~~~~W~ 631 (824)
..+..||+.+.+-.
T Consensus 154 ~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 154 RDLHVMDPEAGTLV 167 (337)
T ss_dssp SSEEEEETTTTEEE
T ss_pred CeEEEEECCCCcEe
Confidence 46899999887654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=93.80 E-value=1.2 Score=47.37 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=77.4
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEecc-CCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
.+++.|+.+ ..+..||..+++....-. ......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-
T Consensus 145 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 145 NVLLSAGCD-----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp TEEEEEETT-----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCC-----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeee
Confidence 577777754 358899998876543221 1111222233332 66777777743 57899999887643221
Q ss_pred -CCC-cccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeE-EEcCCCCCCCcceEEEEE-C-CEEEEEecCCCCC
Q psy17309 588 -PMN-VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW-TLIEPMRHRRSGVSCIAY-H-ECIYVIGGFNGMS 662 (824)
Q Consensus 588 -~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~ 662 (824)
... ..+....+..-++++++.|... .....+..||..+..- .....+.........+.. + ..|++.|+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d--- 289 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD--- 289 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC---
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC---
Confidence 111 1112222222377877776211 1125788899876431 011111222222223323 3 4566666543
Q ss_pred ccceEEEEeCCCCC
Q psy17309 663 RMCNGEKYNPVTKT 676 (824)
Q Consensus 663 ~~~~v~~yd~~~~~ 676 (824)
..+.+||..+.+
T Consensus 290 --g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 --SSIRYFEITSEA 301 (402)
T ss_dssp --SCEEEEEECSST
T ss_pred --CeEEEEEecCCC
Confidence 467888887765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=4.2 Score=40.96 Aligned_cols=223 Identities=9% Similarity=0.067 Sum_probs=103.5
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
+.|..+|..+++....-.... ....-.+++.. ++..++.|+.+ ..+..||..+++-........ .......
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~h~--~~~~~~~ 116 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSHS--ARVGSLS 116 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS--SCEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeEEEecCcc--ceEEEee
Confidence 468999999887655211111 11122233333 66777888755 468889998876432222111 2223344
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEE-EECCEEEEEcccCCCCcCCceEEEeCCCCeEE-
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT-TLQGKIYITGGFNGHNCLNSCEVYDPECNQWT- 631 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~- 631 (824)
.++.+.+.|+.+ ..+..++..+................... ..+++.++.|+.+ ..+..||..+.+-.
T Consensus 117 ~~~~~l~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 117 WNSYILSSGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGW 186 (318)
T ss_dssp EETTEEEEEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBS
T ss_pred cCCCEEEEEecC-----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccc
Confidence 455666666643 33445554443322111111111111111 2255666677655 35778888764311
Q ss_pred -EcCCCCCCCcc-eEEEEE--CCEE-EEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCC
Q psy17309 632 -LIEPMRHRRSG-VSCIAY--HECI-YVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFN 706 (824)
Q Consensus 632 -~~~~~p~~r~~-~~~~~~--~~~i-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 706 (824)
........... .+.+.. ++.+ .+.+|.. ...+..+|.....-..................++.+++.+|..
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTT----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCC----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcC
Confidence 11111111111 112222 3333 3444432 2467788887765443322211111111112255666665543
Q ss_pred CCceeeEEEEEECCCCc
Q psy17309 707 GVTTIYHVECYDEKTDE 723 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~~ 723 (824)
.+ .+.+||..+.+
T Consensus 263 d~----~i~iwd~~~~~ 275 (318)
T 4ggc_A 263 QN----QLVIWKYPTMA 275 (318)
T ss_dssp TC----CEEEEETTTCC
T ss_pred CC----EEEEEECCCCc
Confidence 22 57889987653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.75 E-value=1.2 Score=47.18 Aligned_cols=215 Identities=8% Similarity=0.048 Sum_probs=102.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE----CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-E
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI----GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-V 549 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~ 549 (824)
..+..||..+.+-..... . .....++... ++.+++.|+.+ ..+..||..+.+-... +...... .
T Consensus 122 ~~i~iwd~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~ 190 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN--F--EETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEIL 190 (408)
T ss_dssp SEEEEEETTTTEEEEEEE--C--SSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEE
T ss_pred CeEEEeeCCCCccceecc--C--CCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEE
Confidence 468888888776544211 1 1111222222 33466777644 4588899887643211 1111111 2
Q ss_pred EEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCc--EEeec------------CCCcccCceEEEEE--CCEEEEEccc
Q psy17309 550 STAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIA------------PMNVERSDASATTL--QGKIYITGGF 611 (824)
Q Consensus 550 ~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~------------~~p~~r~~~~~~~~--~~~lyv~GG~ 611 (824)
+++.. ++ .+++.|+.+ ..+..||..+.. ...+. .............+ ++..++.|+.
T Consensus 191 ~~~~~~~~~~ll~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 191 AVSWSPRYDYILATASAD-----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EEEECSSCTTEEEEEETT-----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCcEEEEEcCC-----CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 23332 33 377777754 357888876543 11110 00111112222223 5666777775
Q ss_pred CCCCcCCceEEEeCCCCeEEEcCC-----CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCC
Q psy17309 612 NGHNCLNSCEVYDPECNQWTLIEP-----MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686 (824)
Q Consensus 612 ~~~~~~~~v~~yd~~~~~W~~~~~-----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 686 (824)
+ ..+..||..+.+-..... ..............+..+++++.+ ..+.+||..+.+-... +...
T Consensus 266 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~--~~~~ 333 (408)
T 4a11_B 266 D-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSGEQITM--LKGH 333 (408)
T ss_dssp T-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETTTCCEEEE--ECCC
T ss_pred C-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECcCCcceee--eccC
Confidence 5 368899988765322110 011111111112223334444432 4788899876553222 1111
Q ss_pred Ccce-EEEE-ECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 687 RSNF-AIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 687 r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.... +++. -++++++.||.++ .+.+||+.+.
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 366 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDC-----NILAWVPSLY 366 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTS-----CEEEEEECC-
T ss_pred CCeEEEEEEcCCCCEEEEECCCC-----eEEEEeCCCC
Confidence 1111 2222 2678888888765 5777887764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.60 E-value=7 Score=39.64 Aligned_cols=204 Identities=4% Similarity=-0.038 Sum_probs=107.9
Q ss_pred CceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE
Q psy17309 474 TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA 552 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 552 (824)
...+..+|+....-..+.. +..-+++++. ++.+|+...... ...++.+|+.+++...+...+..+.....+
T Consensus 52 ~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~ 123 (306)
T 2p4o_A 52 VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIFLNGIT 123 (306)
T ss_dssp TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSCEEEEE
T ss_pred CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccCC---cceEEEEcCCCCeEEEEEeCCCccccCccc
Confidence 3468888887643222111 1233445544 567888764211 125888999998887776655545444444
Q ss_pred EE-CCEEEEEecccCCCCCCeEEEEeCCCCc---EEeecC----CCc-c-cCceEEEEECCEEEEEcccCCCCcCCceEE
Q psy17309 553 VH-QDVIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAP----MNV-E-RSDASATTLQGKIYITGGFNGHNCLNSCEV 622 (824)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~----~p~-~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 622 (824)
.. ++.+|+.-. ....++++|+.+.. |..-+. .+. . ....++..-++.||+.-- ..+.+.+
T Consensus 124 ~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-----~~~~I~~ 193 (306)
T 2p4o_A 124 PLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-----EKMLLLR 193 (306)
T ss_dssp ESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-----TTTEEEE
T ss_pred ccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC-----CCCEEEE
Confidence 33 556777532 23589999987642 211111 111 1 112223223568998742 2367899
Q ss_pred EeCCC-CeE---EEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEEC-
Q psy17309 623 YDPEC-NQW---TLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVID- 696 (824)
Q Consensus 623 yd~~~-~~W---~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~- 696 (824)
||+.. .+. +....+..|+ +++.- +|+||+.-.. .+.|.+||+. .+...+...+.+-.....++++
T Consensus 194 ~~~~~~g~~~~~~~~~~~~~P~---gi~vd~dG~l~va~~~-----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 194 IPVDSTDKPGEPEIFVEQTNID---DFAFDVEGNLYGATHI-----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp EEBCTTSCBCCCEEEEESCCCS---SEEEBTTCCEEEECBT-----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred EEeCCCCCCCccEEEeccCCCC---CeEECCCCCEEEEeCC-----CCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 99864 221 1111121121 23333 6889988643 2578999986 4444332222232334444443
Q ss_pred -----CEEEEEcc
Q psy17309 697 -----DMIFAIGG 704 (824)
Q Consensus 697 -----~~i~v~GG 704 (824)
+.|||...
T Consensus 265 ~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 265 TEGDCTAIYVVTN 277 (306)
T ss_dssp STTTTTEEEEEEC
T ss_pred ccCCCCEEEEECC
Confidence 57888754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=93.56 E-value=5.8 Score=40.81 Aligned_cols=137 Identities=10% Similarity=0.123 Sum_probs=71.8
Q ss_pred eEEEEECCCCcEE-EcccCCCC-CCCceeEEEEE-C----CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce
Q psy17309 476 FVETYDTRADRWV-KIDQVDPM-GPRAYHGTAVI-G----YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 548 (824)
Q Consensus 476 ~~~~yd~~~~~W~-~~~~~~~~-~~r~~~~~~~~-~----~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 548 (824)
.+..||..+.+.. .+.....+ ....-.+++.. + +.+++.|+.+ ..+..||..+.+-...-.- ....-
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~-~~~~i 118 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-----GIIRIINPITMQCIKHYVG-HGNAI 118 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-----CEEEEECTTTCCEEEEEES-CCSCE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-----CEEEEEEchhceEeeeecC-CCCcE
Confidence 5788887755432 22111111 12223333333 3 5788888754 4688999887653221111 11112
Q ss_pred EEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEE
Q psy17309 549 VSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 549 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y 623 (824)
.+++.. ++.+++.|+.+ ..+..||..+.+-... ..+.........+.+ ++..++.|+.+ ..+..|
T Consensus 119 ~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~ 188 (366)
T 3k26_A 119 NELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLW 188 (366)
T ss_dssp EEEEECSSCTTEEEEEETT-----SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEE
T ss_pred EEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-----CCEEEE
Confidence 223332 56777887754 4588999988764332 222222222223332 46667777755 367888
Q ss_pred eCCCC
Q psy17309 624 DPECN 628 (824)
Q Consensus 624 d~~~~ 628 (824)
|..+.
T Consensus 189 d~~~~ 193 (366)
T 3k26_A 189 RINSK 193 (366)
T ss_dssp ESCSH
T ss_pred ECCCC
Confidence 88764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.54 E-value=3.7 Score=41.86 Aligned_cols=187 Identities=10% Similarity=0.121 Sum_probs=93.0
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCce---EEeccCCCCcceE-EEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVW---KEIAPMNFKRCYV-STAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
+.+++.||.++ .+..||+.+..- .....+....... +++.. ++.+++.|+.+ ..+..++......
T Consensus 51 ~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-----~~i~~~~~~~~~~ 120 (340)
T 4aow_A 51 PDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-----GTLRLWDLTTGTT 120 (340)
T ss_dssp TTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-----ccceEEeecccce
Confidence 45777787653 467777655432 1222221111111 22222 56777777754 4577777777665
Q ss_pred EeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE----CCEEEEEecCC
Q psy17309 584 SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY----HECIYVIGGFN 659 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~ 659 (824)
...................+..++.|+.+ ..+..||.....-..... .........+.+ .+.+++.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred eeeecCCCCceeEEEEeecCccceeecCC-----CeEEEEEeCCCceEEEEe-ccccCcccceEEccCCCCcEEEEEcCC
Confidence 44332222222222222245566666654 346677776544322221 111122222222 24466666653
Q ss_pred CCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..+..||..+.+-...-. .......++.+ ++++++.|+.++ .+.+||..+..
T Consensus 195 -----~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~ 248 (340)
T 4aow_A 195 -----KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDG-----QAMLWDLNEGK 248 (340)
T ss_dssp -----SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTE
T ss_pred -----CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEeccCc
Confidence 457888987765433211 11111222233 678888888765 57788887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.52 E-value=5.8 Score=42.31 Aligned_cols=224 Identities=12% Similarity=0.096 Sum_probs=105.9
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
+..++.|+. ...+..||..+.+-... ... ......+...++.+++.|+.+ ..+..+|..+......
T Consensus 159 g~~lasgs~-----Dg~v~iWd~~~~~~~~~--~~~--h~~~v~~~s~~~~~l~sgs~d-----~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 159 GNYLAVGTS-----SAEVQLWDVQQQKRLRN--MTS--HSARVGSLSWNSYILSSGSRS-----GHIHHHDVRVAEHHVA 224 (420)
T ss_dssp SSEEEEEET-----TSCEEEEETTTTEEEEE--ECC--CSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEE
T ss_pred CCEEEEEEC-----CCeEEEEEcCCCcEEEE--EeC--CCCceEEEeeCCCEEEEEeCC-----CceeEeeecccceeeE
Confidence 445566653 24588899888765432 111 112223334466677777754 4567777765443211
Q ss_pred ccCCCCcc-eEEEE-EECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcccCce-EEEEE--CCEEEEE-ccc
Q psy17309 540 APMNFKRC-YVSTA-VHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVERSDA-SATTL--QGKIYIT-GGF 611 (824)
Q Consensus 540 ~~~~~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~-~~~~~--~~~lyv~-GG~ 611 (824)
.+..... ...+. ..++..++.|+.+ +.+.++|..+.+ +..+.......... +.+.. +..+++. ||.
T Consensus 225 -~~~~h~~~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 225 -TLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp -EEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred -EecccccceeeeeecCCCCeeeeeecc-----ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 1111111 11122 2255666666643 346667765543 11111111111111 12222 3444444 443
Q ss_pred CCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcc
Q psy17309 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN 689 (824)
Q Consensus 612 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (824)
.+ ..+..||..+++-...-.... ...+.+.. ++.+++.+|.. ...+.+||..+.+ .+..+......
T Consensus 299 ~D----~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~sg~~----d~~I~iwd~~~~~--~v~~l~gH~~~ 366 (420)
T 4gga_A 299 SD----RHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMA--KVAELKGHTSR 366 (420)
T ss_dssp TT----CEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCC--EEEEECCCSSC
T ss_pred CC----CEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEEEecC----CCEEEEEECCCCc--EEEEEcCCCCC
Confidence 22 468889998876443322111 12222222 45555555542 2468889987654 22222211111
Q ss_pred eEEEEE--CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 690 FAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 690 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
...+.+ +++.++.||.++ .|.+||..
T Consensus 367 V~~l~~spdg~~l~S~s~D~-----tvriWdv~ 394 (420)
T 4gga_A 367 VLSLTMSPDGATVASAAADE-----TLRLWRCF 394 (420)
T ss_dssp EEEEEECTTSSCEEEEETTT-----EEEEECCS
T ss_pred EEEEEEcCCCCEEEEEecCC-----eEEEEECC
Confidence 222233 778888888776 56677654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.52 E-value=2 Score=42.71 Aligned_cols=185 Identities=6% Similarity=-0.092 Sum_probs=100.3
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCC-CcEEeecCCCcccCceEEE-
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTE-NQWSLIAPMNVERSDASAT- 599 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~p~~r~~~~~~- 599 (824)
...++.+|+.+++...+...+. .-.+++. -+++.+++++ ...++++|+.+ .+...+........-..++
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred ceeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 4678999999988765543321 1122222 2566666664 24799999998 7766654333212212222
Q ss_pred EECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEeCCCCCE
Q psy17309 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCNGEKYNPVTKTW 677 (824)
Q Consensus 600 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W 677 (824)
.-+++.+++++.... ....++.+|..+.....+..... ....+.. +++ |++.++.++ ...++.+|..+...
T Consensus 93 spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 93 SPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVE 165 (297)
T ss_dssp CTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCE
T ss_pred CCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcc
Confidence 235666666553321 24678888887776555543221 2222222 444 554554332 23677778887777
Q ss_pred EECCCCCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 678 SQVPDMYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 678 ~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
..+...+.. .....+ +++ |++.+..++ ...++.+++.+.....+.
T Consensus 166 ~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 166 TRLTHGEGR---NDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EECCCSSSC---EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECC
T ss_pred eEcccCCCc---cccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEe
Confidence 666543221 122222 555 444443333 246888888777776653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=2.1 Score=44.14 Aligned_cols=227 Identities=8% Similarity=0.092 Sum_probs=112.5
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-C---CEEEEEeecCCCcccceEEEEECCCCc-
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-G---YNIYVIGGFDGNEYYNSCRCFNAVTKV- 535 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~yd~~~~~- 535 (824)
.+++.|+.. .....+..||..+.+...+... .....-.+++.. + +.+++.|+.+ ..+..||..+.+
T Consensus 32 ~l~~~~s~~--~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 102 (357)
T 3i2n_A 32 KFVTMGNFA--RGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNLEAPEM 102 (357)
T ss_dssp EEEEEEC----CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECTTSCSS
T ss_pred eEEEecCcc--CCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeCCCCCc
Confidence 566666531 1134688888888776542111 111112222222 2 4777777754 358888888764
Q ss_pred -eEEeccCCCCcceEEEEE-------ECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEE---
Q psy17309 536 -WKEIAPMNFKRCYVSTAV-------HQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATT--- 600 (824)
Q Consensus 536 -W~~~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~--- 600 (824)
-..+.....+ -.++.. .++..++.|+.+ ..+.+||+.+.. ...+..... .+.-.+++.
T Consensus 103 ~~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 103 PVYSVKGHKEI--INAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp CSEEECCCSSC--EEEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred cEEEEEecccc--eEEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 2222211111 112221 256677777753 458888988764 233322221 112222221
Q ss_pred --ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE----CCEEEEEecCCCCCccceEEEEeCCC
Q psy17309 601 --LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY----HECIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 601 --~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
-++.+++.|+.+ ..+..||..+.+-....... ..-.+++.. ++..++.|+.+ ..+..||..+
T Consensus 176 ~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 243 (357)
T 3i2n_A 176 YNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNIK--NGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRT 243 (357)
T ss_dssp CC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEECS--SCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEE
T ss_pred cCCCCCEEEEEccC-----CeEEEEECccCceeeecCCC--CceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcC
Confidence 367777777654 46889999887643332222 122223333 56777777654 4577777654
Q ss_pred CCEEECCCC------CCCCcceEEEEE-CCE-EEEEccCCCCceeeEEEEEECCCC
Q psy17309 675 KTWSQVPDM------YNPRSNFAIEVI-DDM-IFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 675 ~~W~~~~~~------p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+ .+..+ .....-.+++.. ++. +++.|+.++ .+.+||..+.
T Consensus 244 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 292 (357)
T 3i2n_A 244 QH--PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-----GLHLWKYEYP 292 (357)
T ss_dssp EE--TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEEEECC
T ss_pred CC--cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-----cEEEeecCCC
Confidence 21 11111 111111222223 455 788887765 5777776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=93.46 E-value=8.2 Score=39.96 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=59.3
Q ss_pred CC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcC---CCCCCCcceEEEEE--CCE-EEEEecCCCCCccceEEEEeC--
Q psy17309 602 QG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIE---PMRHRRSGVSCIAY--HEC-IYVIGGFNGMSRMCNGEKYNP-- 672 (824)
Q Consensus 602 ~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~-- 672 (824)
++ .+|+.+.. .+.+.+||..+++++.+. ..+........+.+ +++ ||+..... .+.+.+|+.
T Consensus 221 dg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECT
T ss_pred CCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcC
Confidence 44 57776532 256888988887775543 33332233333334 454 66654320 134556555
Q ss_pred CCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 673 VTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 673 ~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+.+++.+...+....-..++.- +++.+++++...+ .-.++.+|+++.+-+.+.
T Consensus 292 ~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 292 TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN--VIQIFERDQATGLLTDIK 346 (361)
T ss_dssp TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT--EEEEEEECTTTCCEEECS
T ss_pred CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC--CEEEEEEECCCCcEeecc
Confidence 56777666544332111223222 5554444433222 224566788888777664
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.85 Score=47.27 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=95.2
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-C---CEEEEEecccCCCCCCeEEEEeCCCCc--
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-Q---DVIYAMGGYNGQRRQNSVEKYNYTENQ-- 582 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~yd~~t~~-- 582 (824)
..+++.|+.+. ....+..||..+++............-.+++.. + +.+++.|+.+ ..+..||..+..
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 103 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNLEAPEMP 103 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECTTSCSSC
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeCCCCCcc
Confidence 35666665311 125688899888776544332222222233332 2 4777777754 458888887764
Q ss_pred EEeecCCCcccCceEEE-------EECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCC--CCcceEEEE----
Q psy17309 583 WSLIAPMNVERSDASAT-------TLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRH--RRSGVSCIA---- 647 (824)
Q Consensus 583 W~~~~~~p~~r~~~~~~-------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~--~r~~~~~~~---- 647 (824)
-..+.....+ -.++. .-++..++.|+.+ ..+..||..+.. ...+..... .+...+++.
T Consensus 104 ~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 104 VYSVKGHKEI--INAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp SEEECCCSSC--EEEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred EEEEEecccc--eEEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 1122111111 11111 1246667777754 368889887754 333332222 112222221
Q ss_pred -ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE----CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 648 -YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI----DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 648 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
-++.+++.|+.+ ..+..||..+.+-...... ...-.+++.. ++..+++|+.++ .+.+||..+
T Consensus 177 ~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~ 243 (357)
T 3i2n_A 177 NQEERVVCAGYDN-----GDIKLFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEG-----KFHVFDMRT 243 (357)
T ss_dssp C-CCCEEEEEETT-----SEEEEEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTT-----EEEEEEEEE
T ss_pred CCCCCEEEEEccC-----CeEEEEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCC-----eEEEEeCcC
Confidence 367777777753 4788999887653322111 1112223322 567777777655 566777654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.83 Score=48.37 Aligned_cols=189 Identities=6% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEecc------C-----C-CCcceEEEEEE--CCEEEEEecccCCCCCCeE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP------M-----N-FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~-----~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 573 (824)
++.+++.|+.+ ..+..||..+........ . . ....-.+++.. ++.+++.|+.+ ..+
T Consensus 55 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i 124 (408)
T 4a11_B 55 EGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-----KTL 124 (408)
T ss_dssp TCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-----SEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-----CeE
Confidence 35566677654 357888887654321110 0 0 11111223332 45577777643 568
Q ss_pred EEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--C
Q psy17309 574 EKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--H 649 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 649 (824)
..||..+.+-...-..+.+......... ++.+++.|+.+ ..+..||..+.+-.. .+........++.+ +
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPR 197 (408)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCE--EECCCCSCEEEEEECSS
T ss_pred EEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceee--eecCCCCcEEEEEECCC
Confidence 8999988765444333322211111111 34467777654 468889987654221 11212222223333 3
Q ss_pred CE-EEEEecCCCCCccceEEEEeCCCCC--EEECCC------------CCCCCcceEEEEE--CCEEEEEccCCCCceee
Q psy17309 650 EC-IYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPD------------MYNPRSNFAIEVI--DDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 650 ~~-iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~------------~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~ 712 (824)
+. +++.|+.+ ..+..||..+.. ...+.. ..........+.+ +++.++.|+.++
T Consensus 198 ~~~ll~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----- 267 (408)
T 4a11_B 198 YDYILATASAD-----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN----- 267 (408)
T ss_dssp CTTEEEEEETT-----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred CCcEEEEEcCC-----CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC-----
Confidence 33 77788754 457888886543 122110 0111112222333 677777887665
Q ss_pred EEEEEECCCCc
Q psy17309 713 HVECYDEKTDE 723 (824)
Q Consensus 713 ~v~~yd~~~~~ 723 (824)
.+.+||..+.+
T Consensus 268 ~i~vwd~~~~~ 278 (408)
T 4a11_B 268 RMRLWNSSNGE 278 (408)
T ss_dssp CEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 58889988754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=10 Score=42.54 Aligned_cols=237 Identities=9% Similarity=-0.038 Sum_probs=124.4
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEE-cccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECC--CC
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVK-IDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAV--TK 534 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~--~~ 534 (824)
+.+++... ..+.+..+|+.+.+-.. ++ ....-|++++. +..+|+.+. ...+..+|+. +.
T Consensus 167 ~~~~V~~~-----~~~~V~viD~~t~~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~ 230 (567)
T 1qks_A 167 NLFSVTLR-----DAGQIALIDGSTYEIKTVLD-----TGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEP 230 (567)
T ss_dssp GEEEEEET-----TTTEEEEEETTTCCEEEEEE-----CSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSC
T ss_pred ceEEEEeC-----CCCeEEEEECCCCeEEEEEe-----CCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCC
Confidence 35555543 34578999999886543 22 22233455544 567787542 2479999995 44
Q ss_pred ceEEeccCCCCcceEEEEEE-----CC-EEEEEecccCCCCCCeEEEEeCCCCcEEe-ec--CC--------CcccCceE
Q psy17309 535 VWKEIAPMNFKRCYVSTAVH-----QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSL-IA--PM--------NVERSDAS 597 (824)
Q Consensus 535 ~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~--~~--------p~~r~~~~ 597 (824)
+ .+..++....-..++.. +| .+|+..-. .+.+.++|..+.+=.. ++ .+ |.+|....
T Consensus 231 ~--~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 231 T--TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp C--EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred c--EeEEEecCCCCceeEEccccCCCCCEEEEEEcc-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 3 23333332222334443 44 66666432 3678888977755322 11 11 12232222
Q ss_pred EEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEeCCCC
Q psy17309 598 ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 598 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
.+..++..+++-= .....+...|..+.....+..++..+..|....- +++ +|+.... .+.|.++|.++.
T Consensus 304 ~~s~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~ 374 (567)
T 1qks_A 304 LASHYRPEFIVNV----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEG 374 (567)
T ss_dssp EECSSSSEEEEEE----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTT
T ss_pred EEcCCCCEEEEEe----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCC
Confidence 2222333333211 1235678888777655555545555655555443 444 4444332 478999999987
Q ss_pred CEE---EC-CCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCc-----EEeccCCCC
Q psy17309 676 TWS---QV-PDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDE-----WYEATDMNI 732 (824)
Q Consensus 676 ~W~---~~-~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~ 732 (824)
+=. .+ ...|.|..+.....- ++.+|+.+-... ..|-++|.++.. |+.+..++.
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEec
Confidence 532 23 344555333333222 367887753221 257788877633 887755443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.22 E-value=2.7 Score=43.02 Aligned_cols=187 Identities=8% Similarity=0.037 Sum_probs=94.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++..++.|+.+ ..+..++........................++..++.|+.+ ..+..+|.....-....
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEEC
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-----CeEEEEEeCCCceEEEE
Confidence 56677777754 357778877766544333322222222222345666666643 34667776654432222
Q ss_pred CCCcccCceEEEEE----CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q psy17309 588 PMNVERSDASATTL----QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGM 661 (824)
Q Consensus 588 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 661 (824)
.... ......+.+ .+.+++.||.+ ..+..||..+.+....-. .......++.+ ++++++.|+.+
T Consensus 167 ~~~~-~~~v~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D-- 236 (340)
T 4aow_A 167 DESH-SEWVSCVRFSPNSSNPIIVSCGWD-----KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKD-- 236 (340)
T ss_dssp SSSC-SSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT--
T ss_pred eccc-cCcccceEEccCCCCcEEEEEcCC-----CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCC--
Confidence 1111 111222222 23456666654 457889988776433221 11122223333 67788888764
Q ss_pred CccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 662 SRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+.+||..+.+-.. .+........++...+..++.|+.++ .+.+||.++..-
T Consensus 237 ---g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~iwd~~~~~~ 289 (340)
T 4aow_A 237 ---GQAMLWDLNEGKHLY--TLDGGDIINALCFSPNRYWLCAATGP-----SIKIWDLEGKII 289 (340)
T ss_dssp ---CEEEEEETTTTEEEE--EEECSSCEEEEEECSSSSEEEEEETT-----EEEEEETTTTEE
T ss_pred ---CeEEEEEeccCceee--eecCCceEEeeecCCCCceeeccCCC-----EEEEEECCCCeE
Confidence 467888887654222 11111122223333444555666543 578888877643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=15 Score=42.16 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred ceEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEe
Q psy17309 475 DFVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEI 539 (824)
Q Consensus 475 ~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 539 (824)
..+.++|..+.+ |..-............+-++.++.||+..+.........++.||+.+++ |+.-
T Consensus 127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 468899987764 7652111111111222334568888875432111234679999999877 8753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.17 E-value=5.1 Score=41.23 Aligned_cols=184 Identities=11% Similarity=0.106 Sum_probs=94.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcc-eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC-YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
+.+++.|+.+ ..+..||..+........+..... -.+++.. ++..++.|+.+ ..+.+||..+.+....
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQI 123 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceee
Confidence 4788888754 358888887633322121211111 1222322 56667777643 4788999998876554
Q ss_pred cCCCcccCceEEEE---ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCc
Q psy17309 587 APMNVERSDASATT---LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSR 663 (824)
Q Consensus 587 ~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 663 (824)
.....+ -.+++. -++.+++.|+.+ ..+..||..+.+-.. .+.......+.....+.+++.++
T Consensus 124 ~~~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------ 188 (368)
T 3mmy_A 124 AQHDAP--VKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMM--VLQLPERCYCADVIYPMAVVATA------ 188 (368)
T ss_dssp EECSSC--EEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSE--EEECSSCEEEEEEETTEEEEEEG------
T ss_pred ccccCc--eEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEE--EEecCCCceEEEecCCeeEEEeC------
Confidence 322211 222232 267778888765 368888887654211 11112223333444555555444
Q ss_pred cceEEEEeCCCCC--EEECCCCCCCCcceEEEEEC----CEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 664 MCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEVID----DMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 664 ~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
...+..||..... +..+...............+ ...++.|+.++ .+.+||..+.
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-----~i~i~~~~~~ 248 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-----RVAIHYINPP 248 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-----EEEEEESSCS
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-----cEEEEecCCC
Confidence 2467788876543 34433221111111112222 23367776654 5777887665
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.15 E-value=10 Score=40.12 Aligned_cols=232 Identities=10% Similarity=0.063 Sum_probs=123.4
Q ss_pred eEEEEECCCCcEEEcccCC-CCC--CC-------ceeEEEEE----CCEEEEEeecCCCcccceEEEEECCCCceEEecc
Q psy17309 476 FVETYDTRADRWVKIDQVD-PMG--PR-------AYHGTAVI----GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP 541 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~-~~~--~r-------~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 541 (824)
.++..+....+|..+.... .+. .+ .-.++++. .+.||+.+. ...+++.+-...+|+.+..
T Consensus 82 gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~ 155 (394)
T 3b7f_A 82 TVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAG 155 (394)
T ss_dssp EEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHH
T ss_pred cEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcC
Confidence 5677777778999865321 111 11 11233333 466776542 1458888888889998754
Q ss_pred C---CC--------------CcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC------CCcc---
Q psy17309 542 M---NF--------------KRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP------MNVE--- 592 (824)
Q Consensus 542 ~---~~--------------~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~------~p~~--- 592 (824)
. |. ....++++.. .+.||+..+. ..+++.+-...+|+.+.. +|.+
T Consensus 156 ~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~ 229 (394)
T 3b7f_A 156 FNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVE 229 (394)
T ss_dssp HHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSS
T ss_pred ccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccc
Confidence 2 21 1122344433 3578876432 247788778889998753 1211
Q ss_pred --cCceEEEEE-C--CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC-CCCC--CcceEEEEE---CCEEEEEecCCCC
Q psy17309 593 --RSDASATTL-Q--GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP-MRHR--RSGVSCIAY---HECIYVIGGFNGM 661 (824)
Q Consensus 593 --r~~~~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~--r~~~~~~~~---~~~iyv~GG~~~~ 661 (824)
...++++.. . +.||+..+ ..+++.+-...+|+.+.. +|.. ......+.. .+.||+.......
T Consensus 230 ~g~~~~~i~~~~~~~~~l~vg~~-------~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~ 302 (394)
T 3b7f_A 230 FGHDPHCVVQHPAAPDILYQQNH-------CGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSD 302 (394)
T ss_dssp SCBCEEEEEECSSSTTEEEEEET-------TEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCS
T ss_pred cCcceeEEEECCCCCCEEEEEcC-------CeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCc
Confidence 223444443 2 67777432 347888888899999864 5542 222333332 4678886421110
Q ss_pred -------CccceEEEEeCCCCCEEECC-CCCCCCc-----ceEEEEE--C-CEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 662 -------SRMCNGEKYNPVTKTWSQVP-DMYNPRS-----NFAIEVI--D-DMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 662 -------~~~~~v~~yd~~~~~W~~~~-~~p~~r~-----~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.....+++-.-...+|+.+. .+|.... ..+++.. + +.||+ |+..+ .+++-+-...+|+
T Consensus 303 ~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~-g~~~g-----~l~~S~D~G~tW~ 376 (394)
T 3b7f_A 303 VWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYF-GTTGG-----EIWASADEGEHWQ 376 (394)
T ss_dssp STTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEE-ECTTS-----CEEEESSTTSBCE
T ss_pred cceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEE-EeCCC-----eEEEECCCCCCce
Confidence 01123444433447899885 3454211 1223332 3 44665 43222 3555555567899
Q ss_pred ecc-CCCC
Q psy17309 726 EAT-DMNI 732 (824)
Q Consensus 726 ~~~-~~p~ 732 (824)
.+. .+|.
T Consensus 377 ~~~~~lp~ 384 (394)
T 3b7f_A 377 CIASHLPH 384 (394)
T ss_dssp EEECSCSC
T ss_pred EcccCCCC
Confidence 984 4554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=93.14 E-value=5.4 Score=40.70 Aligned_cols=185 Identities=9% Similarity=0.048 Sum_probs=92.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCc----eEEeccCCCCcceEEEEE-ECCE-EEEEecccCCCCCCeEEEEeC-CC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKV----WKEIAPMNFKRCYVSTAV-HQDV-IYAMGGYNGQRRQNSVEKYNY-TE 580 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~yd~-~t 580 (824)
++.+++.|+.+ ..+..||..+.. ...... ....-.+++. -++. .++.|+.+ ..+.+||. .+
T Consensus 22 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~ 89 (342)
T 1yfq_A 22 SKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTVQ-----GEILKVDLIGS 89 (342)
T ss_dssp GGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEETT-----SCEEEECSSSS
T ss_pred CCCEEEEEcCC-----CeEEEEEeCCCCccccceeeee--cCCceEEEEECCCCCcEEEEEcCC-----CeEEEEEeccC
Confidence 44555666643 457788877665 322221 1122223333 3677 77777744 46899999 88
Q ss_pred CcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC---e----EEEcCCCCCCCcceEEEEECCEEE
Q psy17309 581 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN---Q----WTLIEPMRHRRSGVSCIAYHECIY 653 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~----W~~~~~~p~~r~~~~~~~~~~~iy 653 (824)
.....+...+....-.+++...+.+++.|+.+ ..+..||..+. . .+.+..+.....-.+++...+. +
T Consensus 90 ~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l 163 (342)
T 1yfq_A 90 PSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-L 163 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-E
T ss_pred CceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-E
Confidence 87655544112222223333335566666654 35777876540 0 2223333322223333444555 5
Q ss_pred EEecCCCCCccceEEEEeCCC-CC--EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 654 VIGGFNGMSRMCNGEKYNPVT-KT--WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+.|+.+ ..+..||..+ .. ...... +....-.+++.. +++.+++|+.++ .+.+||.+.
T Consensus 164 ~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~ 225 (342)
T 1yfq_A 164 IVGMNN-----SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDG-----RVAVEFFDD 225 (342)
T ss_dssp EEEEST-----TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTS-----EEEEEECCT
T ss_pred EEEeCC-----CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCC-----cEEEEEEcC
Confidence 555543 4788999877 32 222111 111112222333 567888887654 455555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=93.11 E-value=8.5 Score=39.21 Aligned_cols=238 Identities=7% Similarity=-0.081 Sum_probs=118.5
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.+++.+.. ...+..||+.+.+...+... ....-.+++.. ++.+|+.+..+. .....+++||+.++....
T Consensus 56 g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 56 GQLFLLDVF-----EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNLQD 126 (333)
T ss_dssp SCEEEEETT-----TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSCEE
T ss_pred CCEEEEECC-----CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCCEEEE
Confidence 445555432 24688999998887664211 12223444443 667877653221 112479999999887653
Q ss_pred e-ccCCCCcceEEEEEE-CCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEcccCC
Q psy17309 539 I-APMNFKRCYVSTAVH-QDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGFNG 613 (824)
Q Consensus 539 ~-~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~ 613 (824)
+ ........-..++.. ++.+|+..... .......++++|+.+.+...+..- .....+++.. ++ .||+....
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~-- 202 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT-- 202 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG--
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC--
Confidence 3 322222222233332 67888864321 111235799999988776654211 1111223332 44 58876432
Q ss_pred CCcCCceEEEeCCCC--eEEEcC-----CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCC
Q psy17309 614 HNCLNSCEVYDPECN--QWTLIE-----PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY 684 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~--~W~~~~-----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 684 (824)
...+.+||+.++ ....+. .++.. .......+ ++.||+.... ...+.+||++...-..+. .+
T Consensus 203 ---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~~~-~~ 272 (333)
T 2dg1_A 203 ---ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQIL-IP 272 (333)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEEE-CT
T ss_pred ---CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEEEE-cC
Confidence 246888998542 232211 11111 12222333 5788887632 247889998654433332 22
Q ss_pred CCC----cceEEEEE--C-CEEEEEccCCCCceeeEEEEEECC
Q psy17309 685 NPR----SNFAIEVI--D-DMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 685 ~~r----~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
... .....+.+ + +.||+.+..........++.+++.
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 110 01222333 3 477766543221122356677654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.03 E-value=6.8 Score=43.93 Aligned_cols=170 Identities=11% Similarity=0.105 Sum_probs=91.0
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecc-cCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL- 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~- 601 (824)
..+..|+..+.+-...-.. ...-.+++.. +..++.|+. + ..+..||..+..... ..+.........+.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~l~~~~~~d-----~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRL--NSPGSAVSLS-QNYVAVGLEEG-----NTIQVFKLSDLEVSF-DLKTPLRAKPSYISIS 497 (615)
T ss_dssp SEEEEEETTTCCEEEEEEC--SSCEEEEEEC-SSEEEEEETTT-----SCEEEEETTEEEEEE-ECSSCCSSCEEEEEEC
T ss_pred CceEEEeccCCceeeeccc--CCCceEEEEc-CCEEEEeecCC-----CeEEEEECCCccccc-cccCCccCceEEEEEC
Confidence 4567777655442221111 1112223333 666677764 3 468899998876543 233322333333333
Q ss_pred -CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEE------------CCEEEEEecCCCCCccceE
Q psy17309 602 -QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAY------------HECIYVIGGFNGMSRMCNG 667 (824)
Q Consensus 602 -~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~------------~~~iyv~GG~~~~~~~~~v 667 (824)
++++++.|+.+ ..+..||..+.+-.. .+.. .......+.+ ++++++.|+.+ ..+
T Consensus 498 ~~g~~l~~~~~d-----g~i~iw~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-----g~i 565 (615)
T 1pgu_A 498 PSETYIAAGDVM-----GKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-----TNI 565 (615)
T ss_dssp TTSSEEEEEETT-----SCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT-----SCE
T ss_pred CCCCEEEEcCCC-----CeEEEeeCCCCccee--EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC-----CcE
Confidence 67788888765 468899988765432 2322 2222333333 67888888764 478
Q ss_pred EEEeCCCC--CEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 668 EKYNPVTK--TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 668 ~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
.+||..+. ....+..- ......-+..-+++ ++.||.++ .+.+||.++
T Consensus 566 ~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~d~-----~v~iw~~~~ 614 (615)
T 1pgu_A 566 FIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADA-----CIKRWNVVL 614 (615)
T ss_dssp EEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTS-----CEEEEEEC-
T ss_pred EEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecCCc-----eEEEEeeec
Confidence 89998875 23332211 11111122334788 88887765 466666554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=92.99 E-value=2.2 Score=44.88 Aligned_cols=195 Identities=11% Similarity=-0.070 Sum_probs=94.6
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccC-CCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
..++.+|+.+++-..+...+. ...+....- +++.+++..... ......++.+|+.+.....+............+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred ceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 679999999987666543221 222223333 455444433221 12246899999988776665443221111111222
Q ss_pred -CCE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCC------CcceEEEEECCEEEEEec----CCCCCccceEEE
Q psy17309 602 -QGK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHR------RSGVSCIAYHECIYVIGG----FNGMSRMCNGEK 669 (824)
Q Consensus 602 -~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------r~~~~~~~~~~~iyv~GG----~~~~~~~~~v~~ 669 (824)
+|+ |+... .........++.+|+.+++-+.+..++.. ........-+..|++... .. ......++.
T Consensus 247 pdg~~l~~~~-~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~~~~~i~~ 324 (388)
T 3pe7_A 247 PDGSALVYVS-YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IENDPFLYV 324 (388)
T ss_dssp TTSSCEEEEE-EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------CCCCEEEE
T ss_pred CCCCEEEEEe-cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cCCCCEEEE
Confidence 555 43333 22212123499999999887666544320 011111122233333210 00 012357999
Q ss_pred EeCCCCCEEECCCCCCC----------CcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 670 YNPVTKTWSQVPDMYNP----------RSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 670 yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+|+.+.+-+.+...+.+ .....+..-++ .|++....++ ...++.+|.....|
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g---~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG---KPALYLATLPESVW 387 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEEEEECCGGGG
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC---ceeEEEEECChhcc
Confidence 99998877666432220 11111222355 4555543332 23689999887766
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=92.97 E-value=2.8 Score=44.06 Aligned_cols=200 Identities=10% Similarity=-0.075 Sum_probs=103.7
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE--E
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT--L 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~ 601 (824)
..++.+|+.+++-..+...+..........-+++..+++..+ ..++.+|+.+.+-..+...+.......... -
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 134 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANS 134 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECT
T ss_pred ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeeeechhhcccccceeECC
Confidence 469999999988877765443222112223355444444321 478999999987666655554433222222 2
Q ss_pred CCEEEEEcccC-----------------CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCC-CC
Q psy17309 602 QGKIYITGGFN-----------------GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNG-MS 662 (824)
Q Consensus 602 ~~~lyv~GG~~-----------------~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~-~~ 662 (824)
+++.++.--.. .......++.+|+.+++-+.+..-+. ...+....- +++.+++..... ..
T Consensus 135 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 135 DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDL 213 (388)
T ss_dssp TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTT
T ss_pred CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCC
Confidence 44433311000 01123678999999887665542221 222223333 455444433221 12
Q ss_pred ccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCE-EEEEccCCCCceeeEEEEEECCCCcEEeccCCC
Q psy17309 663 RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 731 (824)
....++.+|+.+.....+........ .....+ +++ |+.+...++ .....++++|+++.+-+.+..++
T Consensus 214 ~~~~l~~~d~~~~~~~~l~~~~~~~~-~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 214 VDARMWLINEDGTNMRKVKTHAEGES-CTHEFWVPDGSALVYVSYLKG-SPDRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp SSCSEEEEETTSCCCEESCCCCTTEE-EEEEEECTTSSCEEEEEEETT-CCCEEEEEECTTTCCEEEEEEEC
T ss_pred CcceEEEEeCCCCceEEeeeCCCCcc-cccceECCCCCEEEEEecCCC-CCcceEEEEecCCCceEEEEcCC
Confidence 24589999998877666654321111 111223 555 544432222 12235999999998876664443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=92.95 E-value=1.7 Score=44.40 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=72.8
Q ss_pred ceEEEEECCCCceEEeccCCCCc-ceEEEEE-ECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCc----ccCce
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKR-CYVSTAV-HQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV----ERSDA 596 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~----~r~~~ 596 (824)
..+..+|+.+.+-...-..+... .-..++. -++ .+|+.++. ...+.++|+.+.+-...-+.+. .....
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 57899999887654332232210 1122333 244 67777652 2579999998876543212211 00122
Q ss_pred EEEEE-CC-EEEEEcccC---CCC---cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccce
Q psy17309 597 SATTL-QG-KIYITGGFN---GHN---CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCN 666 (824)
Q Consensus 597 ~~~~~-~~-~lyv~GG~~---~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~ 666 (824)
.++.. ++ .+|+..... ... ....+.+||+.+.+....-+.+. ....++.. +++ ||+.+ ..
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--------~~ 155 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLYGLG--------RD 155 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEEEES--------SS
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--CcceeEECCCCCEEEEeC--------Ce
Confidence 33333 44 677764210 011 23679999998876543322221 11222322 444 66662 46
Q ss_pred EEEEeCCCCCEE
Q psy17309 667 GEKYNPVTKTWS 678 (824)
Q Consensus 667 v~~yd~~~~~W~ 678 (824)
+.++|+.+.+-.
T Consensus 156 i~~~d~~~~~~~ 167 (337)
T 1pby_B 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEe
Confidence 889999877643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.84 E-value=4.1 Score=47.07 Aligned_cols=214 Identities=8% Similarity=-0.005 Sum_probs=110.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCC---C-cceEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---K-RCYVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
++.+|.+--. +......+|+.+.....|+.+...+. . ........ -+|+..+++...+......++++|..++
T Consensus 79 G~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 79 NGRFFYVRTH-KDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp TTEEEEEEEC-TTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred CCEEEEEEEc-CCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 4455544322 22234667888887888887754332 1 11122222 2677666654433333468999999998
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCC--------CcCCceEEEeCCCCeE--EEcCCCCCCCcceEEEEE--C
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGH--------NCLNSCEVYDPECNQW--TLIEPMRHRRSGVSCIAY--H 649 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~ 649 (824)
+......++.......+..-+|+.++++..+.. .....++.++..+..- ..+...+........+.. +
T Consensus 158 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD 237 (695)
T 2bkl_A 158 EWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD 237 (695)
T ss_dssp CBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT
T ss_pred CCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC
Confidence 764111222222122222236666666655432 2345688999887652 233222222112222222 5
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc---EEe
Q psy17309 650 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE---WYE 726 (824)
Q Consensus 650 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~---W~~ 726 (824)
|+..+++..... ....++.+|..+..|+.+..-... ....+..++.+|+....+. ....++.+|+++.. |+.
T Consensus 238 G~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 238 GKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGA--KYEVHAWKDRFYVLTDEGA--PRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp SCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSC--CEEEEEETTEEEEEECTTC--TTCEEEEEBTTBCSGGGCEE
T ss_pred CCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCc--eEEEEecCCcEEEEECCCC--CCCEEEEEeCCCCCccCCeE
Confidence 554444443221 245788888777788777532221 1222335666666543321 23478899987754 877
Q ss_pred c
Q psy17309 727 A 727 (824)
Q Consensus 727 ~ 727 (824)
+
T Consensus 313 l 313 (695)
T 2bkl_A 313 I 313 (695)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=92.82 E-value=5.6 Score=37.48 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=83.3
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCC--ceEE--e----ccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTK--VWKE--I----APMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~--~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 573 (824)
+++..++.+|+|=| +.+|+++.... .... + +.+|.. ..++... .++++|+|-| +..
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-IDAa~~~~~~~~~yfFkG-------~~y 75 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSG-------RQV 75 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEET-------TEE
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-ccEEEEECCCCeEEEEeC-------CEE
Confidence 45557899999987 67888887652 2221 1 233432 2222211 2689999988 678
Q ss_pred EEEeCCCCcE-EeecC--CCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----c----CCCCCC
Q psy17309 574 EKYNYTENQW-SLIAP--MNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----I----EPMRHR 639 (824)
Q Consensus 574 ~~yd~~t~~W-~~~~~--~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 639 (824)
|+|+..+..- +.+.. +|......-+|.. ++++|+|-| +..++||..+++=.. + +.+|
T Consensus 76 w~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp-- 146 (195)
T 1itv_A 76 WVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVP-- 146 (195)
T ss_dssp EEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSC--
T ss_pred EEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCCC--
Confidence 8888543111 11111 2322122333333 689999977 467899987754211 1 1222
Q ss_pred CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 640 RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 640 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
..-.++...++.+|.+-| +..++||..+..
T Consensus 147 ~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~ 176 (195)
T 1itv_A 147 LDTHDVFQFREKAYFCQD-------RFYWRVSSRSEL 176 (195)
T ss_dssp SSCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred CCCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence 223345556899999988 578889887654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=2.1 Score=45.44 Aligned_cols=144 Identities=10% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccC-ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERS-DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
++..++.|+.+ ..+.+||..+.+-... +..... -.+++.. ++..++.|+.+ ..+..||..+.+...
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSL 201 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeEE
Confidence 67777777754 4688899887754322 111111 1222222 55666677655 468889998876543
Q ss_pred cCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEEC-CCC----CCCCcceEEEEE--CCEEEEEc
Q psy17309 633 IEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDM----YNPRSNFAIEVI--DDMIFAIG 703 (824)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~----p~~r~~~~~~~~--~~~i~v~G 703 (824)
.-.... ...+++.. ++++++.|+.+ ..+..||..+..-... ... .........+.+ +++.++.|
T Consensus 202 ~~~~~~--~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 202 TLSIED--GVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp EEECSS--CEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEcCC--CcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 322111 11222222 67788888764 4578899877653321 110 111111222333 67788888
Q ss_pred cCCCCceeeEEEEEECCCC
Q psy17309 704 GFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 704 G~~~~~~~~~v~~yd~~~~ 722 (824)
+.++ .+.+||..+.
T Consensus 275 s~d~-----~v~~wd~~~~ 288 (393)
T 1erj_A 275 SLDR-----SVKLWNLQNA 288 (393)
T ss_dssp ETTS-----EEEEEEC---
T ss_pred eCCC-----EEEEEECCCC
Confidence 8765 5778887653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.76 E-value=4.5 Score=40.62 Aligned_cols=191 Identities=10% Similarity=-0.034 Sum_probs=101.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+|+++.. ...+++||+.++ ...+... . ..-.+++. -++.+|+.... ...+.+||+.+.+.+.+
T Consensus 39 g~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~-~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 39 RSAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP-S-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESI 105 (296)
T ss_dssp GTEEEEEEGG-----GTEEEEEETTSC-EEEEESS-C-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEE
T ss_pred CCEEEEEeCC-----CCEEEEEECCCC-eEEEECC-C-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEE
Confidence 3457777743 256899999988 6554432 1 12233443 26788876531 25799999988888765
Q ss_pred cCCCc----ccCceEEEEECCEEEEE----cccCC--------CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-C
Q psy17309 587 APMNV----ERSDASATTLQGKIYIT----GGFNG--------HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-H 649 (824)
Q Consensus 587 ~~~p~----~r~~~~~~~~~~~lyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 649 (824)
..... .+....+..-+|++|+. |.... ......+++||+. ++...+..- .....+.+.. +
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--RVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--CSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--CCCCccEEECCC
Confidence 33211 11122222237889987 43210 0113478999987 555444221 1111223322 5
Q ss_pred CEEEEEecCCCCCccceEEEEeCC-CCCE-E--ECCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 650 ECIYVIGGFNGMSRMCNGEKYNPV-TKTW-S--QVPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 650 ~~iyv~GG~~~~~~~~~v~~yd~~-~~~W-~--~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+++++.+.. ...+++||+. +.+. . .+-..... .-.+++. -+|+||+.. + ..+.+||++....
T Consensus 183 g~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~--~-----~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 183 GNLLVSDTG-----DNATHRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAGGLIWASA--G-----DGVHVLTPDGDEL 249 (296)
T ss_dssp SCEEEEETT-----TTEEEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTTSCEEEEE--T-----TEEEEECTTSCEE
T ss_pred CCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCCCCEEEEc--C-----CeEEEECCCCCEE
Confidence 666654432 2578889886 4444 1 11111111 1112322 378888876 1 2689999986554
Q ss_pred Eec
Q psy17309 725 YEA 727 (824)
Q Consensus 725 ~~~ 727 (824)
..+
T Consensus 250 ~~~ 252 (296)
T 3e5z_A 250 GRV 252 (296)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=92.69 E-value=7 Score=39.57 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=94.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCC--CceEEeccCCCCcce-EEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVT--KVWKEIAPMNFKRCY-VSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
++.+++.|+.+ ..+..||..+ ..+.....+...... .+++.. ++.+++.|+.+ ..+.+||..+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~~~~ 91 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEEDPD 91 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEECTT
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEecCCC
Confidence 45566666644 3577777664 345544433222222 233333 36778888754 35777777653
Q ss_pred -------cEEeecCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCCCe----EEEc---C--CC-CC-C
Q psy17309 582 -------QWSLIAPMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPECNQ----WTLI---E--PM-RH-R 639 (824)
Q Consensus 582 -------~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~~---~--~~-p~-~ 639 (824)
.|+.+..+.........+.. + +.+++.|+.+ ..+..||..+.+ |... . .. +. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhccccccccccccccccCCc
Confidence 34444333322222233333 3 6677777754 367888876543 2211 0 11 11 1
Q ss_pred CcceEEEEE-----CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CC----EEEEEccCCCC
Q psy17309 640 RSGVSCIAY-----HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DD----MIFAIGGFNGV 708 (824)
Q Consensus 640 r~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~----~i~v~GG~~~~ 708 (824)
.....++.. ++.+++.|+.+ ..+..++........+..+.........+.+ ++ ++++.|+.++
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg- 240 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALE-----QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG- 240 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETT-----EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-
T ss_pred ccceeEEEeccCCCCCcEEEEecCC-----CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-
Confidence 111222222 26677777753 3445556566665444433332222223333 44 7888888765
Q ss_pred ceeeEEEEEECCC
Q psy17309 709 TTIYHVECYDEKT 721 (824)
Q Consensus 709 ~~~~~v~~yd~~~ 721 (824)
.+.+||..+
T Consensus 241 ----~i~iwd~~~ 249 (351)
T 3f3f_A 241 ----RIRIFKITE 249 (351)
T ss_dssp ----CEEEEEEEE
T ss_pred ----eEEEEeCCC
Confidence 466676654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=8.7 Score=37.88 Aligned_cols=195 Identities=12% Similarity=0.004 Sum_probs=109.8
Q ss_pred eEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEe
Q psy17309 502 HGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 502 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 577 (824)
+++++. ++.||+.-.. ...++++|+.+..-..+..... ..-+++++. ++.||+.-.. .+.+.++|
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~~ 107 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVAK 107 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT-----TTEEEEEE
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC-----CCEEEEEE
Confidence 455554 5789987642 3579999998765433322111 122445554 5799998542 36789999
Q ss_pred CCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEE
Q psy17309 578 YTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIY 653 (824)
Q Consensus 578 ~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 653 (824)
+....-+.+.+... .....+++- +++||+..... ....+++++++...-+.+..... ..-.+.+.- ++.||
T Consensus 108 ~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~ly 182 (267)
T 1npe_A 108 MDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLC 182 (267)
T ss_dssp TTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEE
T ss_pred cCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEE
Confidence 87654333322111 111233443 68999975321 13578888886544333322111 122233333 57899
Q ss_pred EEecCCCCCccceEEEEeCCCCCEEEC-CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 654 VIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
+.-.. .+.|.++|+....-..+ ..+..| .+++.-++.||+....+ +.+.++|+++.+-.
T Consensus 183 v~d~~-----~~~I~~~~~~g~~~~~~~~~~~~P---~gi~~d~~~lyva~~~~-----~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 183 WVDAG-----THRAECLNPAQPGRRKVLEGLQYP---FAVTSYGKNLYYTDWKT-----NSVIAMDLAISKEM 242 (267)
T ss_dssp EEETT-----TTEEEEEETTEEEEEEEEECCCSE---EEEEEETTEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred EEECC-----CCEEEEEecCCCceEEEecCCCCc---eEEEEeCCEEEEEECCC-----CeEEEEeCCCCCce
Confidence 98653 36899999875432222 222222 35556689999975332 36899999886544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.44 E-value=2.1 Score=49.94 Aligned_cols=205 Identities=5% Similarity=-0.167 Sum_probs=104.4
Q ss_pred CCEEEEEeec-CCCcccceEEEEECCCCceEEeccCCCCc----------------------c-eEEE-EEECCEEEEEe
Q psy17309 508 GYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR----------------------C-YVST-AVHQDVIYAMG 562 (824)
Q Consensus 508 ~~~lyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r----------------------~-~~~~-~~~~~~iyv~G 562 (824)
+++.+++++. ++......++.+|..+++...+....... . -..+ ..-+++..+++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 5555555554 44334458999999998877655332110 0 0112 22256655555
Q ss_pred cccCCCCCCeEEEEeCCCC---cEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC
Q psy17309 563 GYNGQRRQNSVEKYNYTEN---QWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 638 (824)
Q Consensus 563 G~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 638 (824)
+. ..++++|..+. .-..+..... .....+.. +|+..+++.. ..++.+|..+++...+.....
T Consensus 127 ~~------~~i~~~d~~~~~~~~~~~l~~~~~--~~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 127 LG------GELYLYDLKQEGKAAVRQLTHGEG--FATDAKLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ET------TEEEEEESSSCSTTSCCBCCCSSS--CEEEEEECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCC
T ss_pred eC------CcEEEEECCCCCcceEEEcccCCc--ccccccCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCc
Confidence 42 68999999887 4433332211 11122222 5655555431 379999999888776643222
Q ss_pred CC----------------cceEEEEECCEEEEEecCCCC----------------------------CccceEEEEeCCC
Q psy17309 639 RR----------------SGVSCIAYHECIYVIGGFNGM----------------------------SRMCNGEKYNPVT 674 (824)
Q Consensus 639 ~r----------------~~~~~~~~~~~iyv~GG~~~~----------------------------~~~~~v~~yd~~~ 674 (824)
.. ....+..-+|+.++++..++. .....++.+|+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 10 011111225554444432211 0123788889887
Q ss_pred -CCEEECCCCC-CCCc-ceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 675 -KTWSQVPDMY-NPRS-NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 675 -~~W~~~~~~p-~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.+-..+...+ .... ...+. -+++.++++..+.......++++|+.+.+...+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~ 327 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL 327 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE
Confidence 6654443221 1111 11122 455544444332223345799999988876554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.37 E-value=7.4 Score=39.92 Aligned_cols=216 Identities=8% Similarity=-0.063 Sum_probs=108.6
Q ss_pred CceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE
Q psy17309 474 TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA 552 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 552 (824)
...++.+|..+.+-..+ ......... +++.+++....+......++.+|..+++...+...+. ....+
T Consensus 42 ~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~ 110 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLE 110 (347)
T ss_dssp EEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEE
T ss_pred cceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---cccee
Confidence 45678888887765553 111222222 4433333332221224569999999888776655432 22222
Q ss_pred EE-CCEEEEEeccc------------------CC----CCCCeEEEEeCCCCcE-EeecCCCcccCceEEEEE-CCEEEE
Q psy17309 553 VH-QDVIYAMGGYN------------------GQ----RRQNSVEKYNYTENQW-SLIAPMNVERSDASATTL-QGKIYI 607 (824)
Q Consensus 553 ~~-~~~iyv~GG~~------------------~~----~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~~-~~~lyv 607 (824)
.. +++.++++... +. .....++++|+.+++. ..+.. + .....+.. ++ +++
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVV 185 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEE
Confidence 22 55444443321 00 0125689999998887 66654 3 22333333 45 555
Q ss_pred EcccCCCC---c-CCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCC---CCccceEEEEeCCCCCEEEC
Q psy17309 608 TGGFNGHN---C-LNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNG---MSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 608 ~GG~~~~~---~-~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~~~~W~~~ 680 (824)
.+..+... . ...++.+| +++++.+..- .......-+|+.+++++... ......++.+| +.++..+
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred EEecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 55433211 2 45788888 6777666432 12222244665444444222 11245789999 6677766
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEE
Q psy17309 681 PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYD 718 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 718 (824)
..-.. ........+.+.+|+.+..++ ...++ ++
T Consensus 258 ~~~~~-~~~~~~~~~sdg~~~~~~~~~---~~~l~-~~ 290 (347)
T 2gop_A 258 LDEVD-RGVGQAKIKDGKVYFTLFEEG---SVNLY-IW 290 (347)
T ss_dssp STTCC-SEEEEEEEETTEEEEEEEETT---EEEEE-EE
T ss_pred cccCC-cccCCccEEcCcEEEEEecCC---cEEEE-Ec
Confidence 43211 111211222234777766544 23567 77
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=2.2 Score=47.83 Aligned_cols=189 Identities=10% Similarity=-0.039 Sum_probs=94.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeC--CCCcE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNY--TENQW 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~--~t~~W 583 (824)
++.+|+.+.. ...+..+|..+++-... ++....-|.++.. ++ .+|+.+. + +.+.+||+ .+.+-
T Consensus 148 ~~~~~vs~~~-----d~~V~v~D~~t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 148 PNLFSVTLRD-----AGQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTK 214 (543)
T ss_dssp GGEEEEEEGG-----GTEEEEEETTTCCEEEE--EECSTTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEE
T ss_pred CCEEEEEEcC-----CCeEEEEECCCceEEEE--EecCcccceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcE
Confidence 5677877653 25688899988765322 1212224544443 44 5666543 2 67999999 66543
Q ss_pred EeecCCCcccCceEEEEE-----CC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-----------CCCCcceEEE
Q psy17309 584 SLIAPMNVERSDASATTL-----QG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-----------RHRRSGVSCI 646 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-----------p~~r~~~~~~ 646 (824)
+..++....-..++.. +| .+|+ +.+. .+.+.++|..+.+-...-+. |.+|....+.
T Consensus 215 --~~~i~~g~~p~~va~sp~~~~dg~~l~v-~~~~----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 215 --VAEIKIGIEARSVESSKFKGYEDRYTIA-GAYW----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp --EEEEECCSEEEEEEECCSTTCTTTEEEE-EEEE----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred --EEEEecCCCcceEEeCCCcCCCCCEEEE-EEcc----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 3333333333334433 45 4555 4332 25678889887653322111 1223222222
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCE-EEEEccCCCCceeeEEEEEECCCCc
Q psy17309 647 AY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDM-IFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 647 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.. ++.+|+.... ...+..+|..+.+-..+..++..+.-+.++.- +++ +|+.+.. .+.+.++|..+++
T Consensus 288 s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~ 357 (543)
T 1nir_A 288 SHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRR 357 (543)
T ss_dssp CSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTE
T ss_pred CCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCe
Confidence 22 3455554432 36788898876431111111222222333322 555 4444322 2367889998876
Q ss_pred EEe
Q psy17309 724 WYE 726 (824)
Q Consensus 724 W~~ 726 (824)
-..
T Consensus 358 l~~ 360 (543)
T 1nir_A 358 LSA 360 (543)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=92.20 E-value=4.7 Score=42.39 Aligned_cols=184 Identities=11% Similarity=0.135 Sum_probs=94.6
Q ss_pred EEEEeecCCCcccceEEEEECCCCceEEec--cCCCCcc--eEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCc--
Q psy17309 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIA--PMNFKRC--YVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQ-- 582 (824)
Q Consensus 511 lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-- 582 (824)
.++.|+.+ ..+..||..+++-...- ..+.... -.+++. .++.+++.|+.+ ..+..||+....
T Consensus 172 ~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 172 RLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----TTVRLWDLRITSRA 241 (380)
T ss_dssp CEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----SCEEEEETTTTCCC
T ss_pred EEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----CeEEEEECCCCCcc
Confidence 44555533 45888998887644322 1111111 112222 256788888865 457888876321
Q ss_pred EEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-CC----CCc-ceEEE-EECCEEEE
Q psy17309 583 WSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RH----RRS-GVSCI-AYHECIYV 654 (824)
Q Consensus 583 W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~----~r~-~~~~~-~~~~~iyv 654 (824)
-..+..-.. .-.+++.. ++..++.|+.+ ..+..||..++.-...-.. +. ... -.+++ .-++++++
T Consensus 242 ~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 242 VRTYHGHEG--DINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp CEEECCCSS--CCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred eEEECCcCC--CeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 111111111 11122222 66777888765 4688899888754332111 11 011 11222 23678777
Q ss_pred EecCCCCCccceEEEEeCCCCCEEE-CCCCCCCCc-ceEEEE--ECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 655 IGGFNGMSRMCNGEKYNPVTKTWSQ-VPDMYNPRS-NFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~-~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
.|+.+ ..+.+||..+.+-.. +..+..... ...++. -+++.++.||.++ .+.+||...
T Consensus 315 ~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~iW~~~~ 375 (380)
T 3iz6_a 315 AGYSN-----GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-----NLKIWAFSG 375 (380)
T ss_dssp EECTT-----SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-----CEEEEECCS
T ss_pred EEECC-----CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-----CEEEEecCC
Confidence 77754 468899987665432 222221111 112222 3788889998876 466777654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=92.01 E-value=4.6 Score=41.20 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
++..++.|+.+ ..+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+..||.....-..
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRD-----KTIKVWTIKGQCLAT 143 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETT-----SCEEEEETTSCEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEE
Confidence 56777777754 568889998875321 11111111222222 56777777765 357788876554333
Q ss_pred cCCCCCCCcceEEEEE--------CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEE
Q psy17309 633 IEPMRHRRSGVSCIAY--------HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAI 702 (824)
Q Consensus 633 ~~~~p~~r~~~~~~~~--------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 702 (824)
+..- ......+.+ ++..++.||.+ ..+..||+.+.+-... +.........+.+ ++++++.
T Consensus 144 ~~~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 144 LLGH---NDWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ECCC---SSCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEE
T ss_pred Eecc---CCcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEE
Confidence 3211 111111211 23356666654 4678888876543221 1111111222223 6788888
Q ss_pred ccCCCCceeeEEEEEECCCCc
Q psy17309 703 GGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~ 723 (824)
||.++ .+.+||..+.+
T Consensus 214 ~~~dg-----~i~iwd~~~~~ 229 (319)
T 3frx_A 214 AGKDG-----EIMLWNLAAKK 229 (319)
T ss_dssp EETTC-----EEEEEETTTTE
T ss_pred EeCCC-----eEEEEECCCCc
Confidence 88765 68888887754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=91.95 E-value=4.5 Score=46.63 Aligned_cols=118 Identities=11% Similarity=0.170 Sum_probs=73.1
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-++.++.||+.... ..++.+|..|.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 73 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l 140 (677)
T 1kb0_A 73 PVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRL 140 (677)
T ss_dssp CEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEE
Confidence 35679999998652 468999988765 8765433211 122345567899988632 2468
Q ss_pred EEEeCCCCe--EEEcCC-CCC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEEC
Q psy17309 621 EVYDPECNQ--WTLIEP-MRH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQV 680 (824)
Q Consensus 621 ~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (824)
..+|.++++ |+.-.. -+. .....+.++.++.+|+..+.........+..||..+.+ |+.-
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 999998775 876532 111 11122334568888876543222234679999998765 8764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.92 E-value=6.3 Score=40.62 Aligned_cols=186 Identities=8% Similarity=-0.012 Sum_probs=93.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceE-Eec--c---CCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EIA--P---MNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~--~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
++.+++.||.+ ..+..||..+++-. .+. . +..... ...+..++.|.+.-. ...+..||..+.
T Consensus 47 d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~------~~~~~~~~~~~~ 114 (343)
T 3lrv_A 47 DKWVCMCRCED-----GALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYP------GNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEEEET-----TEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEET------TTEEEEEETTTC
T ss_pred CCCEEEEECCC-----CcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEc------cCceEEeecCCc
Confidence 45677788765 35778887766532 111 1 100001 222223445544432 235666777666
Q ss_pred cEEeecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEec
Q psy17309 582 QWSLIAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGG 657 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 657 (824)
+-...-..+....-.+++.. ++.+++.|+.+ ..+..||..+.+-.............+++.. ++.+++.|+
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 52211111111111112211 46677777765 4688999988775443322222122223333 678888887
Q ss_pred CCCCCccceEEEEeCCCCCEE--ECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 658 FNGMSRMCNGEKYNPVTKTWS--QVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.+ ..+.+||..+.+-. .+.. . .......+.+ +++.++.|+ ++ .+.+||..+..
T Consensus 190 ~d-----g~i~iwd~~~~~~~~~~~~~-~-h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 190 PD-----GILDVYNLSSPDQASSRFPV-D-EEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp TT-----SCEEEEESSCTTSCCEECCC-C-TTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred CC-----CEEEEEECCCCCCCccEEec-c-CCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 54 46889999876532 2211 0 1112222333 677777776 22 58889987753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.91 E-value=10 Score=38.99 Aligned_cols=152 Identities=8% Similarity=0.076 Sum_probs=79.5
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI 633 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 633 (824)
++..++.|+.+ ..+..||..+.+-...........-.+++.. ++.+++.|+.+ ..+..||..+.+-..
T Consensus 138 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~~- 206 (343)
T 3lrv_A 138 NTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQAS- 206 (343)
T ss_dssp -CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSCC-
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCCc-
Confidence 56677777754 4588899988776443322222222233333 67888888765 468899988765320
Q ss_pred CCCCC-CCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCE-EECCCCCCCCcce--EEEEE--CCEEEEEccC
Q psy17309 634 EPMRH-RRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTW-SQVPDMYNPRSNF--AIEVI--DDMIFAIGGF 705 (824)
Q Consensus 634 ~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~--~~~~~--~~~i~v~GG~ 705 (824)
..+.. .......+.+ ++..++.|+ + +.+.+||+.+.+- ..+.......... .++.+ +++.++.|+.
T Consensus 207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 207 SRFPVDEEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp EECCCCTTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred cEEeccCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 11121 1122233333 566777776 2 2688999876531 1111110000111 12333 5677777544
Q ss_pred -CCCceeeEEEEEECCCCcEEe
Q psy17309 706 -NGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 706 -~~~~~~~~v~~yd~~~~~W~~ 726 (824)
++ .-.+|.|+.....|..
T Consensus 281 ~d~---~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 281 ESN---SLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TTT---EEEEEEECTTTCSEEE
T ss_pred CCC---cEEEEEEcccccceEe
Confidence 32 1245555557778987
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=91.91 E-value=11 Score=39.35 Aligned_cols=177 Identities=7% Similarity=-0.075 Sum_probs=93.8
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEE--E
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT--T 600 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~ 600 (824)
..+..+|+.+.+-........ .-.+++.. ++++++.|+. +.+.+++..+..................+ .
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~--~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRG--EVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSS--CCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeCCCC--ceEEEEEccCCceEEeccc------eeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 468889998876543222111 11223332 5676666652 34677777776643322222111112222 3
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
-+++.++.++.++.. ...+..+|.......... .+........++.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 229 pdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-----~~V~iwd~~~~~ 302 (365)
T 4h5i_A 229 ADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND-----NSIALVKLKDLS 302 (365)
T ss_dssp ETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC-----CEEEEEECCCCc
Confidence 378888888765421 224566776666554332 22222222233333 78888888864 468899987754
Q ss_pred EEECCCCCCCC-cceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 677 WSQVPDMYNPR-SNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 677 W~~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
- +..+.... .....+.+ ++++++.|+.++ .|-+||+..
T Consensus 303 ~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-----tvrvw~ip~ 343 (365)
T 4h5i_A 303 M--SKIFKQAHSFAITEVTISPDSTYVASVSAAN-----TIHIIKLPL 343 (365)
T ss_dssp E--EEEETTSSSSCEEEEEECTTSCEEEEEETTS-----EEEEEECCT
T ss_pred E--EEEecCcccCCEEEEEECCCCCEEEEEeCCC-----eEEEEEcCC
Confidence 2 21111111 11223333 788999988776 677787643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=91.90 E-value=22 Score=41.14 Aligned_cols=246 Identities=7% Similarity=-0.029 Sum_probs=122.8
Q ss_pred CCceEEEEECC---CCcEEEcccC-CCCCCC-ceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC
Q psy17309 473 PTDFVETYDTR---ADRWVKIDQV-DPMGPR-AYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK 545 (824)
Q Consensus 473 ~~~~~~~yd~~---~~~W~~~~~~-~~~~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 545 (824)
....++..+.. ...|..+-.. .+.... ........ +++.++++...++.....++.+|..+++...... +..
T Consensus 131 ~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~ 209 (741)
T 1yr2_A 131 NQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV 209 (741)
T ss_dssp SSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE
T ss_pred eEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc
Confidence 34566777765 5566653111 111111 11122222 5665556544333333579999999998754311 111
Q ss_pred cceEEEEEECCEEEEEecccCC---------CCCCeEEEEeCCCCcE--EeecCCCc-ccCceEEEEE-CCEEEEEcccC
Q psy17309 546 RCYVSTAVHQDVIYAMGGYNGQ---------RRQNSVEKYNYTENQW--SLIAPMNV-ERSDASATTL-QGKIYITGGFN 612 (824)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~yd~~t~~W--~~~~~~p~-~r~~~~~~~~-~~~lyv~GG~~ 612 (824)
.. ...+...++-++++..+.. .....+++++..+..- ..+-..+. +......... +|+..++...+
T Consensus 210 ~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 288 (741)
T 1yr2_A 210 KF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE 288 (741)
T ss_dssp ES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred ee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc
Confidence 10 1122222233333333221 1245688888876542 12222221 2222222222 56544444433
Q ss_pred CCCcCCceEEEeCCCC--e-EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCC--CCEEECCCCCCCC
Q psy17309 613 GHNCLNSCEVYDPECN--Q-WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVT--KTWSQVPDMYNPR 687 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~--~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r 687 (824)
.....+.++.+|..+. . |..+.+-...... .....++.||+....+ .....++.+|+.+ ..|+.+-+-...
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~- 364 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKD- 364 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCCSS-
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCCCC-
Confidence 2223568899998877 6 8777543322222 2234567777775432 2245799999887 578887432211
Q ss_pred cceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 688 SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 688 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.-.++...+++|++....++ ...++++|++.+.-..+
T Consensus 365 ~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 365 NLESVGIAGNRLFASYIHDA---KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEEEEBTEEEEEEEETT---EEEEEEEETTSCEEEEC
T ss_pred eEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCceeec
Confidence 11233445888888876544 34688888765544443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=91.85 E-value=15 Score=39.07 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=107.2
Q ss_pred EEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 503 GTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 503 ~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
++++. ++.||+.... ...+.++|+.+++-..+..... ..+ ++.. ++.||+..... ...++++|+.
T Consensus 135 ~la~d~~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~----~~~I~~~d~~ 202 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEG----THTVYVYMKA 202 (409)
T ss_dssp EEEECSTTEEEEEETT-----TTEEEEEETTTTEEEEEEETCC--BCB-CEECTTSSEEEEEBSST----TCEEEEEEGG
T ss_pred EEEEeCCCCEEEEecC-----CCcEEEEECCCCEEEEeeccCC--CCc-eeEecCCCcEEEEecCC----CceEEEEEcC
Confidence 34443 6789988742 2579999999877665543321 112 2222 44677764321 1279999987
Q ss_pred CCc-EEeecCCC--cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC---CCCCCCcc-e-EEEEE-
Q psy17309 580 ENQ-WSLIAPMN--VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE---PMRHRRSG-V-SCIAY- 648 (824)
Q Consensus 580 t~~-W~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~-~-~~~~~- 648 (824)
+.. ...+...+ ....-+++++. ++.||+... ...+++||+.+.....+. ........ . ..+..
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 653 23331111 11222334433 689999432 247999999887765552 11111222 1 44444
Q ss_pred -CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC--CC--------C-CcceEEEEE--CCEEEEEcc-CCCCceeeE
Q psy17309 649 -HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM--YN--------P-RSNFAIEVI--DDMIFAIGG-FNGVTTIYH 713 (824)
Q Consensus 649 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~--------~-r~~~~~~~~--~~~i~v~GG-~~~~~~~~~ 713 (824)
++.||+.... .+.|++||+....-...... +. . -......++ ++.||+... .+ ..
T Consensus 277 ~~g~lyv~d~~-----~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~-----~~ 346 (409)
T 3hrp_A 277 VDSNFYMSDQN-----LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG-----YC 346 (409)
T ss_dssp TTTEEEEEETT-----TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT-----CE
T ss_pred CCCEEEEEeCC-----CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC-----CE
Confidence 5899998643 35789999876522222111 00 0 011222333 577999854 32 36
Q ss_pred EEEEECCCCcEEec
Q psy17309 714 VECYDEKTDEWYEA 727 (824)
Q Consensus 714 v~~yd~~~~~W~~~ 727 (824)
|.++|+.+..-+.+
T Consensus 347 I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 347 LRKLDILDGYVSTV 360 (409)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEE
Confidence 88999766665544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=91.83 E-value=13 Score=38.11 Aligned_cols=184 Identities=9% Similarity=-0.026 Sum_probs=96.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE-EECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA-VHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+|+++.. ...+++||+.+++...... +. .-.+++ .-++.+++... ..+++||+.+.+.+.+
T Consensus 60 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 60 SGTAWWFNIL-----ERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLH 124 (326)
T ss_dssp TTEEEEEEGG-----GTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEE
Confidence 3677877643 2579999999887654432 21 222333 34788887642 3599999999988776
Q ss_pred cCCCccc--CceEEEEE--CCEEEEEcccC-CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecCC
Q psy17309 587 APMNVER--SDASATTL--QGKIYITGGFN-GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HE-CIYVIGGFN 659 (824)
Q Consensus 587 ~~~p~~r--~~~~~~~~--~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~ 659 (824)
...+... .......+ +|++|+..... .......+++|| +++.+.+.. ......+.+.. ++ .+|+....
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~- 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK- 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT-
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC-
Confidence 5433211 11112222 67887743211 112235688888 466554421 00111223322 44 57776532
Q ss_pred CCCccceEEEEeCC--CC-C------EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 660 GMSRMCNGEKYNPV--TK-T------WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 660 ~~~~~~~v~~yd~~--~~-~------W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
...+++||.. +. + +..+.. .........+ ++.||+....+ ..+.+||++...
T Consensus 200 ----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~~-----~~v~~~d~~g~~ 262 (326)
T 2ghs_A 200 ----VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNH 262 (326)
T ss_dssp ----TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCE
T ss_pred ----CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeCC-----CEEEEECCCCCE
Confidence 2578899875 33 2 222211 1111222333 57788764211 268899995543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.82 E-value=17 Score=42.37 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=99.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++.|++... +.+.+||+.++++...... ....-.+++..++.|++... +.+++||+.+++++...
T Consensus 73 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 73 NTYLYMGTD-------NGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSFD 137 (758)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEC
T ss_pred CCcEEEEeC-------CCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEec
Confidence 567776532 4588999999887642111 11112233445788888532 36899999999887763
Q ss_pred C----CCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCC-----CcceEEEEE-C-CEEEEE
Q psy17309 588 P----MNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHR-----RSGVSCIAY-H-ECIYVI 655 (824)
Q Consensus 588 ~----~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~-~-~~iyv~ 655 (824)
. ++... -.+++.- ++.|+|.. . .-+.+||+.+++++.... +.. ..-.+.+.. + +.|||-
T Consensus 138 ~~~~~l~~~~-i~~i~~d~~g~lWigt--~-----~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 138 TRRNGLPNNT-IYSIIRTKDNQIYVGT--Y-----NGLCRYIPSNGKFEGIPL-PVHSSQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp HHHHCCSCSC-EEEEEECTTCCEEEEE--T-----TEEEEEETTTTEEEEECC-CCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred cCCCCcCCCe-EEEEEEcCCCCEEEEe--C-----CCHhhCccCCCceEEecC-CCccccccceeEEEEEECCCCEEEEE
Confidence 2 22211 1122222 67888732 1 347899999988876532 211 111223333 2 357773
Q ss_pred ecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.. ..+.+||+.+.++.....++.. .-.+++.- ++.|+|.- . .-+.+||+.++.+..+
T Consensus 209 t~-------~Gl~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT-~------~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 209 TE-------GYLFQYFPSTGQIKQTEAFHNN-SIKSLALDGNGDLLAGT-D------NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp EE-------EEEEEEETTTTEEEEEEEEEEE-EEEEEEECTTCCEEEEE-T------TEEEEECCTTSCCEEE
T ss_pred EC-------CCCeEEcCCCCeEEeccCCCCC-eEEEEEEcCCCCEEEEe-C------CceeEEecCCCcEEEE
Confidence 21 2578999998888765432211 01111111 56666642 1 1367788877776554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=13 Score=38.06 Aligned_cols=209 Identities=8% Similarity=-0.046 Sum_probs=106.3
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.+++++.. ...++.||+.+++...+... ..-.+++.. ++.+++... +.+++||+.+++...
T Consensus 61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~-----~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 61 GTAWWFNIL-----ERELHELHLASGRKTVHALP-----FMGSALAKISDSKQLIASD-------DGLFLRDTATGVLTL 123 (326)
T ss_dssp TEEEEEEGG-----GTEEEEEETTTTEEEEEECS-----SCEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEE
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEECC-----CcceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEE
Confidence 456665432 24688999988876553221 122333333 778777542 359999999998877
Q ss_pred eccCCC----CcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEccc
Q psy17309 539 IAPMNF----KRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGF 611 (824)
Q Consensus 539 ~~~~~~----~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~ 611 (824)
+...+. .+.....+.-+|.+|+..... .......++++| +.+.+.+.. ......+.+.. ++ .+|+....
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC
Confidence 654322 122222222367787743211 112345789998 465554421 00111233333 44 67876432
Q ss_pred CCCCcCCceEEEeCC--CC-e------EEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 612 NGHNCLNSCEVYDPE--CN-Q------WTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 612 ~~~~~~~~v~~yd~~--~~-~------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
...+++||.. ++ . +.... ..........+ +|.||+.... ...+.+||+....-..+
T Consensus 200 -----~~~I~~~d~~~~~Gl~~~~~~~~~~~~---~~~~~p~gi~~d~~G~lwva~~~-----~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 200 -----VNRLMRVPLDARTGLPTGKAEVFIDST---GIKGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIARY 266 (326)
T ss_dssp -----TCEEEEEEBCTTTCCBSSCCEEEEECT---TSSSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEEEE
T ss_pred -----CCEEEEEEcccccCCcccCceEEEECC---CCCCCCCeeEECCCCCEEEEEeC-----CCEEEEECCCCCEEEEE
Confidence 2578889875 44 2 22221 11111222333 5788887521 14689999954433333
Q ss_pred CCCCCCCcceEEEEE---C-CEEEEEccC
Q psy17309 681 PDMYNPRSNFAIEVI---D-DMIFAIGGF 705 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~---~-~~i~v~GG~ 705 (824)
. +|. .....+.+ + +.||+....
T Consensus 267 ~-~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 267 E-VPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp E-CSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred E-CCC--CCcEEEEEecCCCCEEEEEecC
Confidence 2 222 22333333 2 467776543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=91.36 E-value=14 Score=37.83 Aligned_cols=183 Identities=10% Similarity=0.136 Sum_probs=87.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCc----e-EEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKV----W-KEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~----W-~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
++.+++.||.+ ..+..||..+.. . .....+...... .+++.. ++.+.+.|+.+ ..+..||..+
T Consensus 38 d~~~l~sgs~D-----~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~lwd~~~ 107 (343)
T 2xzm_R 38 DSPVLISGSRD-----KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD-----KTLRLWDLRT 107 (343)
T ss_dssp CCCEEEEEETT-----SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT-----SEEEEEETTS
T ss_pred CCCEEEEEcCC-----CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCC
Confidence 45667777755 346677765432 1 111111111111 122222 55666777654 5688899887
Q ss_pred CcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC---------
Q psy17309 581 NQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH--------- 649 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--------- 649 (824)
.+.... +.........+.+ +++.++.||.+ ..+..||.....-..............++.+.
T Consensus 108 ~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 180 (343)
T 2xzm_R 108 GTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180 (343)
T ss_dssp SCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred CcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCceeeeecccCCCceeeeeeecccccccccc
Confidence 754221 1111111122222 56666777755 46778887644333222222222222223221
Q ss_pred ---CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 650 ---ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 650 ---~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+.+++.|+.+ ..+..||.....-..+. ........+.+ +++.++.|+.++ .+.+||..
T Consensus 181 ~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~---~h~~~v~~~~~s~~g~~l~sgs~dg-----~v~iwd~~ 243 (343)
T 2xzm_R 181 QPFAPYFASVGWD-----GRLKVWNTNFQIRYTFK---AHESNVNHLSISPNGKYIATGGKDK-----KLLIWDIL 243 (343)
T ss_dssp CSSCCEEEEEETT-----SEEEEEETTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTC-----EEEEEESS
T ss_pred CCCCCEEEEEcCC-----CEEEEEcCCCceeEEEc---CccccceEEEECCCCCEEEEEcCCC-----eEEEEECC
Confidence 1466667654 46777884322111111 11111222233 678888888765 67888874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=18 Score=41.50 Aligned_cols=253 Identities=10% Similarity=0.021 Sum_probs=126.2
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCC--------cccceEEEEEC
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN--------EYYNSCRCFNA 531 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~~~~yd~ 531 (824)
+..++++-...+.....++.+|..+++...... +..+.. +.+..+++-++++..+.. .....+++++.
T Consensus 140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---~~~k~~-~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~l 215 (693)
T 3iuj_A 140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPL---KDVKFS-GISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRL 215 (693)
T ss_dssp SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---EEEESC-CCEEETTTEEEEEESSCCC-------CCCCEEEEEET
T ss_pred CCEEEEEEecCCCceEEEEEEECCCCCCCcccc---CCceec-cEEEeCCCEEEEEEecCcccccccccCCCcEEEEEEC
Confidence 344444333333334578899999888755311 101111 112225443334333211 23456888887
Q ss_pred CCCce--EEeccCCC--CcceEEEE-EECCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCCCcccCceEEEEECCE
Q psy17309 532 VTKVW--KEIAPMNF--KRCYVSTA-VHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPMNVERSDASATTLQGK 604 (824)
Q Consensus 532 ~~~~W--~~~~~~~~--~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~ 604 (824)
.+..= ..+...+. +....++. .-+++..++....+ ...+.++.+|..+. .|..+.+-...... ....-+++
T Consensus 216 gt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~ 293 (693)
T 3iuj_A 216 GTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGST 293 (693)
T ss_dssp TSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTE
T ss_pred CCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCE
Confidence 76542 12222222 22222322 23555443332221 12368999998765 67776443222211 13345789
Q ss_pred EEEEcccCCCCcCCceEEEeCCCC---eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 605 IYITGGFNGHNCLNSCEVYDPECN---QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 605 lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+|+....+. ....+..+|..+. .|+.+.+-..... +....++.|++..-.++ ...++++|+.......+.
T Consensus 294 l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 294 LYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp EEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEEC
T ss_pred EEEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEee
Confidence 998865432 2457888998763 4887654332222 44555677766543322 357889998866555543
Q ss_pred CCCCCCcceEEEE-EC-CEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 682 DMYNPRSNFAIEV-ID-DMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 682 ~~p~~r~~~~~~~-~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
+|.......... .+ +.|++... +. ..-..++.||..+++++.+.
T Consensus 367 -~p~~~~~~~~~~~~d~~~l~~~~s-s~-~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 367 -LPGLGSVSGFNGKHDDPALYFGFE-NY-AQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp -CSSSSEEEECCCCTTCSCEEEEEE-CS-SSCCEEEEECTTTCCEEEEE
T ss_pred -cCCCceEEeeecCCCCCEEEEEec-CC-CCCCEEEEEECCCCeEEEEE
Confidence 232211111111 12 34444321 11 12247899999888877663
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.22 E-value=7 Score=45.09 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=72.2
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-++.++.||+.+.. ..++.+|..|.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 66 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp CEEETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 35679999997652 468999988765 8764433211 112234567899888542 2468
Q ss_pred EEEeCCCCe--EEEcCC-CCC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEEC
Q psy17309 621 EVYDPECNQ--WTLIEP-MRH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQV 680 (824)
Q Consensus 621 ~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (824)
..+|.+|++ |+.-.. -+. .....+-++.++.+|+-.+.........+..||..+.+ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 999998875 876543 111 11122335568888874432222234579999998875 8753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.97 E-value=9.4 Score=43.93 Aligned_cols=187 Identities=10% Similarity=0.064 Sum_probs=94.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+++.|+.+ ..+..||..+++-...-.-.. ..-.+++.. ++..++.|+.+ ..+.++|.....-..+
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTI 509 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEeCCC-CCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceee
Confidence 66777777754 468899988765322111111 111222222 56666777754 4577788765432222
Q ss_pred cC-CCcccCceEEEEE--CC--EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCC
Q psy17309 587 AP-MNVERSDASATTL--QG--KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFN 659 (824)
Q Consensus 587 ~~-~p~~r~~~~~~~~--~~--~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 659 (824)
.. ....+....++.+ ++ .+++.|+.+ ..+..||..+.+-... +........++.+ ++++++.||.+
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 22 1112222233333 22 456666655 4688899877654322 1111222233333 67888888864
Q ss_pred CCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+.++|..+.+-.. .+.....-.+++...+..++++|.+. .+.+||..+.+-
T Consensus 583 -----g~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~-----~i~iwd~~~~~~ 635 (694)
T 3dm0_A 583 -----GVVLLWDLAEGKKLY--SLEANSVIHALCFSPNRYWLCAATEH-----GIKIWDLESKSI 635 (694)
T ss_dssp -----SBCEEEETTTTEEEE--CCBCSSCEEEEEECSSSSEEEEEETT-----EEEEEETTTTEE
T ss_pred -----CeEEEEECCCCceEE--EecCCCcEEEEEEcCCCcEEEEEcCC-----CEEEEECCCCCC
Confidence 467788887764322 22222222333333333334444332 488899887654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=90.82 E-value=18 Score=41.87 Aligned_cols=252 Identities=12% Similarity=0.006 Sum_probs=126.7
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCce-eEEEEE-CCEEEEEeecCCC---------cccceEEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAY-HGTAVI-GYNIYVIGGFDGN---------EYYNSCRC 528 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~-~~~~~~-~~~lyv~GG~~~~---------~~~~~~~~ 528 (824)
+..++++....+.....++.+|..+++....... ... .+.+.. + +-++++..+.. .....++.
T Consensus 174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 3444444333333335688999998887552110 000 112222 3 33333333221 12356888
Q ss_pred EECCCCce--EEeccCCC-CcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCC--c-EEeecCCCcccCceEEEEE
Q psy17309 529 FNAVTKVW--KEIAPMNF-KRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTEN--Q-WSLIAPMNVERSDASATTL 601 (824)
Q Consensus 529 yd~~~~~W--~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~-W~~~~~~p~~r~~~~~~~~ 601 (824)
++..+..- ..+...+. +........ -+|+..++....+....+.++.+|..+. . |..+.+-....... +..-
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~d 326 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGV 326 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Eecc
Confidence 88876542 12222221 222223322 3554444443332223578999999877 6 87775433222221 2234
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCC--CeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPEC--NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
++.||+....+ .....++.+|..+ ..|+.+-+-... .-......++.|++....++ ...++.+|+....-..
T Consensus 327 g~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 327 GDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDA---KSQVLAFDLDGKPAGA 400 (741)
T ss_dssp TTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETT---EEEEEEEETTSCEEEE
T ss_pred CCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCceee
Confidence 67777764332 2245689999887 579887532221 11223444888888775433 3568888876554444
Q ss_pred CCCCCCCCcceEEEEE--CC-EEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 680 VPDMYNPRSNFAIEVI--DD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 680 ~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
+. +|.... ...... ++ .|++... + ...-.+++.||..+++.+.+.
T Consensus 401 l~-~~~~~~-v~~~~~s~d~~~l~~~~s-s-~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 401 VS-LPGIGS-ASGLSGRPGDRHAYLSFS-S-FTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp CB-CSSSCE-EEEEECCBTCSCEEEEEE-E-TTEEEEEEEEETTTTEEEECS
T ss_pred cc-CCCCeE-EEEeecCCCCCEEEEEEc-C-CCCCCEEEEEECCCCcEEEEe
Confidence 42 222111 111222 33 3443321 1 112347899999998877663
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=90.51 E-value=7 Score=43.86 Aligned_cols=192 Identities=10% Similarity=-0.032 Sum_probs=101.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++.++++.+.. +.+..||..+++-..+...+. ......-+|+..++++.+... ...++++|+.+.+++.+.
T Consensus 121 g~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 121 GEAVVFTGATE-----DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp SSCEEEEEECS-----SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEEC
T ss_pred CCeEEEEecCC-----CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEee
Confidence 44555555432 234477888887766654433 222333466666655543221 245999999999888775
Q ss_pred CCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceE-----E--EEECCEEEEEecCC
Q psy17309 588 PMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVS-----C--IAYHECIYVIGGFN 659 (824)
Q Consensus 588 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-----~--~~~~~~iyv~GG~~ 659 (824)
.-+... ...+.. +|+.++.+..++ ...++.+|.++++...+..........+ . ..-+|++++.+..+
T Consensus 192 ~~~~~~--~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 192 SGEGSF--SSASISPGMKVTAGLETAR---EARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp CSSCEE--EEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred cCCCcc--ccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence 433221 222222 565544433222 2478999999988773322111101111 0 22366777777643
Q ss_pred CCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 660 GMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
..+..|+. .+... .+.. ...+++.-++++++.++... ....++.+|..+ +.+.+
T Consensus 267 -----g~~~l~~~--g~~~~---~~~~-~v~~~~~sdg~~l~~~s~~~--~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 267 -----GRSAVFID--GERVE---APQG-NHGRVVLWRGKLVTSHTSLS--TPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -----TEEEEEET--TEEEC---CCSS-EEEEEEEETTEEEEEEEETT--EEEEEEEETTCC-EEECC
T ss_pred -----CcEEEEEE--CCeec---cCCC-ceEEEEecCCEEEEEEcCCC--CCCeEEEEcCCC-ceEEE
Confidence 35667776 44332 2221 11222222888887766443 234688888765 55544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=90.36 E-value=2.8 Score=45.08 Aligned_cols=187 Identities=6% Similarity=0.044 Sum_probs=88.4
Q ss_pred CEEEEEeecCCCcccceEEEEECCCC--------ceEEeccCCCC-cceEEEEEE-CCE-EEEEecccCCCCCCeEEEEe
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTK--------VWKEIAPMNFK-RCYVSTAVH-QDV-IYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~~~~-r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd 577 (824)
+.+++.|+.+ ..+..||..+. ....+..+... ....+++.. ++. +++.|+.+ ..+.+||
T Consensus 141 ~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd 210 (430)
T 2xyi_A 141 ACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD-----HTICLWD 210 (430)
T ss_dssp EEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT-----SCEEEEE
T ss_pred CcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC-----CeEEEEe
Confidence 4577777644 35888887651 12111111111 111223332 334 67777643 4578888
Q ss_pred CCCC---cEEe--ecCCC-cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCCCCcceEEEEE
Q psy17309 578 YTEN---QWSL--IAPMN-VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRHRRSGVSCIAY 648 (824)
Q Consensus 578 ~~t~---~W~~--~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~ 648 (824)
+.+. .+.. ...+. ....-.+++.. ++.+++.|+.+ ..+..||..+.. ...+..+........++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 8762 1211 11111 11112223332 46677777654 468889987652 1111111111122233333
Q ss_pred --CC-EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 649 --HE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 649 --~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++ .+++.|+.+ ..|.+||..+.. ..+..+.........+.+ +..+++.||.++ .+.+||..+
T Consensus 286 ~p~~~~~l~tg~~d-----g~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 286 NPYSEFILATGSAD-----KTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK 353 (430)
T ss_dssp CSSCTTEEEEEETT-----SEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred CCCCCCEEEEEeCC-----CeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence 23 488888864 468899987532 011111111112222233 336788887665 467777665
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.22 E-value=16 Score=36.46 Aligned_cols=227 Identities=10% Similarity=0.031 Sum_probs=103.5
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
+..++.|+. ...+..||..+.+-...... . ..........+.+.+.|+.+ ..+..++..+......
T Consensus 79 ~~~l~sgs~-----Dg~v~iw~~~~~~~~~~~~~--h--~~~~~~~~~~~~~l~s~~~~-----~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 79 GNYLAVGTS-----SAEVQLWDVQQQKRLRNMTS--H--SARVGSLSWNSYILSSGSRS-----GHIHHHDVRVAEHHVA 144 (318)
T ss_dssp SSEEEEEET-----TSEEEEEETTTTEEEEEEEC--C--SSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEE
T ss_pred CCEEEEEEC-----CCcEEEeecCCceeEEEecC--c--cceEEEeecCCCEEEEEecC-----CceEeeecCCCceeEE
Confidence 345566653 24688899888765432111 1 11122233345566666543 3345555555433221
Q ss_pred ccCCCCcceEEE-EEECCEEEEEecccCCCCCCeEEEEeCCCCcEE--eecCCCcccCc-eEEEEE--CC-EEEEEcccC
Q psy17309 540 APMNFKRCYVST-AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS--LIAPMNVERSD-ASATTL--QG-KIYITGGFN 612 (824)
Q Consensus 540 ~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~--~~~~~p~~r~~-~~~~~~--~~-~lyv~GG~~ 612 (824)
............ ...++..++.|+.+ ..+.+||..+.+-. ........... .+.+.. ++ .+.+.+|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 111111111222 22355666666643 35778887764311 11111111111 111222 23 334444432
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
...+..+|..+..-..................++.+++.+|.. -..+.+||..+.+- +..+.........
T Consensus 220 ----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~--~~~l~gH~~~V~~ 289 (318)
T 4ggc_A 220 ----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAK--VAELKGHTSRVLS 289 (318)
T ss_dssp ----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCE--EEEECCCSSCEEE
T ss_pred ----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcC----CCEEEEEECCCCcE--EEEEcCCCCCEEE
Confidence 2457788887766444332222211111122245566655532 24688899876542 2222211222222
Q ss_pred EEE--CCEEEEEccCCCCceeeEEEEEECC
Q psy17309 693 EVI--DDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 693 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+.+ ++++++.||.++ .|.+||..
T Consensus 290 l~~spdg~~l~S~s~D~-----~v~iWd~~ 314 (318)
T 4ggc_A 290 LTMSPDGATVASAAADE-----TLRLWRCF 314 (318)
T ss_dssp EEECTTSSCEEEEETTT-----EEEEECCS
T ss_pred EEEcCCCCEEEEEecCC-----eEEEEECC
Confidence 333 678888888776 56667654
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=90.15 E-value=0.07 Score=44.10 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=43.5
Q ss_pred eeecceEEEE--c-ccccccccceeEEeeecccchhhhheeecccc-----------eecCHhhHHHHHHHHhhcCh
Q psy17309 227 AVHQDVIYAM--G-GYNGQRRQNSVEKYNYTENQDKIEEKKLFERK-----------LHITEDNVASLLLATDFFCM 289 (824)
Q Consensus 227 ~~~~~~~~~~--~-g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~-----------l~l~~~~v~~ll~~a~~~~i 289 (824)
+..+..+..| . |.+.|...+.|.+++++..+++.+++|+|.-. -.+..+.+.+|+.||++|++
T Consensus 20 A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 20 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 4455555555 1 44466667889999999999999999997643 25777889999999999875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=90.02 E-value=12 Score=37.94 Aligned_cols=222 Identities=9% Similarity=0.054 Sum_probs=104.7
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..++.|+. ...+..||..+++-...-.. ....-.+++.. ++.+++.|+.+ ..+..||.....-..
T Consensus 77 g~~l~s~s~-----D~~v~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D-----~~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 77 GAYALSASW-----DKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKKASMIISGSRD-----KTIKVWTIKGQCLAT 143 (319)
T ss_dssp SSEEEEEET-----TSEEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSCEEEEEETT-----SCEEEEETTSCEEEE
T ss_pred CCEEEEEeC-----CCEEEEEECCCCCeeEEEcc---CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEE
Confidence 344555553 24688899888764331011 01111222222 56677777755 357788886554333
Q ss_pred eccCCCCcceEEEEEE-------CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEc
Q psy17309 539 IAPMNFKRCYVSTAVH-------QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITG 609 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~G 609 (824)
+..-.. .-.++... ++..++.||.+ ..+..+|..+.+-.. .+.........+.+ ++++++.|
T Consensus 144 ~~~h~~--~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 144 LLGHND--WVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ECCCSS--CEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEE
T ss_pred EeccCC--cEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEE
Confidence 221111 11112221 23356666643 457888887654322 11111112222222 67778888
Q ss_pred ccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCC-EEECC-CCCCC
Q psy17309 610 GFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKT-WSQVP-DMYNP 686 (824)
Q Consensus 610 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~-~~p~~ 686 (824)
|.+ ..+..||..+.+-... +.....-.+++.. ++.+++.+.. ..+.+|+..... ...+. .....
T Consensus 215 ~~d-----g~i~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 215 GKD-----GEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp ETT-----CEEEEEETTTTEEEEE--EECCSCEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTC
T ss_pred eCC-----CeEEEEECCCCcEEEE--ecCCCcEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccCcccccc
Confidence 765 3688899877652211 1111112222222 4555554442 345566655432 22221 11110
Q ss_pred ----CcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 687 ----RSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 687 ----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
......+.+ +++.++.|+.++ .+.+||..+
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg-----~i~vWd~~t 317 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDN-----VIRVWQVMT 317 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTS-----CEEEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCc-----eEEEEEEee
Confidence 011112222 788888888766 466676544
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.9 Score=41.77 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=59.9
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCC----CcEEee--------cCCCcc--cCceEEEEE---CCEEEEEcccCCCCc
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTE----NQWSLI--------APMNVE--RSDASATTL---QGKIYITGGFNGHNC 616 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~--------~~~p~~--r~~~~~~~~---~~~lyv~GG~~~~~~ 616 (824)
.++++|+|-| +.+|+||..+ +....- +.+|.. ....-+|.. ++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 5899999988 6789997532 222111 223331 112333333 689999987
Q ss_pred CCceEEEeCCCCeEEEc----C-CCCC------CCcceEEEE--ECCEEEEEecCCCCCccceEEEEeCC
Q psy17309 617 LNSCEVYDPECNQWTLI----E-PMRH------RRSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 617 ~~~v~~yd~~~~~W~~~----~-~~p~------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
+..++||..+++...- . ..|. +..--++.. .++++|++-| +..++||..
T Consensus 136 -~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 136 -NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp -TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred -CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 5678898776655431 1 1221 222233444 3799999988 578999987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=24 Score=40.59 Aligned_cols=209 Identities=11% Similarity=-0.000 Sum_probs=110.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCC--------CCCCeEEEEeCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ--------RRQNSVEKYNYT 579 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~ 579 (824)
+++.++++-..++.....++.+|..+++..... .+..+....+-. +++-++++..... .....+++++..
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 566555544333333467999999999876542 111111122233 6543444333221 334678888887
Q ss_pred CCcE--EeecCCCc--ccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCCCCCCcceEEEEECCEE
Q psy17309 580 ENQW--SLIAPMNV--ERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPMRHRRSGVSCIAYHECI 652 (824)
Q Consensus 580 t~~W--~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i 652 (824)
+..= ..+-..+. +....++... +++..++....+ ...+.++.+|..+. .|..+.+-..... ......++.|
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l 294 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTL 294 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEE
Confidence 7542 12222222 2222222222 555443332221 12368899998765 6777654222221 1233457899
Q ss_pred EEEecCCCCCccceEEEEeCCCC---CEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 653 YVIGGFNGMSRMCNGEKYNPVTK---TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 653 yv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
|+....+. ....++..|+.+. .|+.+.+-.... . +....+++|++..-.++ ...++++|.+......+
T Consensus 295 ~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 295 YLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEE
T ss_pred EEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEe
Confidence 99876432 2457899998763 488764322221 2 45555777776644332 34788999887655554
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.98 E-value=3 Score=39.38 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=79.5
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCC---CceEEec----cCCCCcceEEEEEECCEEEEEecccCCCCCCeEEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT---KVWKEIA----PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~---~~W~~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
+++..++.+|+|-| +.+|+++... +.=..+. .+|. ...++....++++|+|-| +.+|+
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~ 74 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWV 74 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEE
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEE
Confidence 34466899999988 6688886432 1001121 2333 222222224789999988 67899
Q ss_pred EeCCCCcE---Eeec----CCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----cC---CCCCC
Q psy17309 576 YNYTENQW---SLIA----PMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----IE---PMRHR 639 (824)
Q Consensus 576 yd~~t~~W---~~~~----~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~---~~p~~ 639 (824)
|+..+... +.+. .+|......+... .++++|.+-| +..++||..+++-.. +. .+|.
T Consensus 75 ~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip~- 146 (196)
T 3c7x_A 75 FDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIPE- 146 (196)
T ss_dssp EETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCCS-
T ss_pred EeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcCC-
Confidence 98542110 1122 2442222222221 2689999977 467889987754221 11 2222
Q ss_pred CcceEEEEE-CC-EEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 640 RSGVSCIAY-HE-CIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 640 r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
.--++... ++ ++|++-| +..++||..+.+
T Consensus 147 -~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 147 -SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp -SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred -CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 22333333 44 8999988 578999987654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=89.92 E-value=20 Score=37.20 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=58.7
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCC----CcccceEEEEECCC
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDG----NEYYNSCRCFNAVT 533 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~----~~~~~~~~~yd~~~ 533 (824)
..+|+.-........+.+..+|+.+.+-.. . .+..... .+++. +..+|+..-... +...+.+..||+.+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~--i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLG--M--VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEE--E--EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEE--E--ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 356665432222223578999998876543 1 1112222 33333 668898763211 12245689999987
Q ss_pred Cce-EEeccCCC----CcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 534 KVW-KEIAPMNF----KRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 534 ~~W-~~~~~~~~----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
.+- ..++..+. ...-+.++.. +..+|+.... ..+.+.++|..+++-
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PATSIGIVDVAKGDY 143 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SSEEEEEEETTTTEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CCCeEEEEECCCCcE
Confidence 653 23322111 0111123322 4467776421 135788899888753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=89.90 E-value=1.7 Score=46.95 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=79.9
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-CcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-NVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
++.+++.|+.+ ..+.+||..+..-...-.+ .....-.+++.. ++.+++.|+.+ ..+-.||.+++...
T Consensus 131 ~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 131 HPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRLQDFKGNILR 200 (435)
T ss_dssp CTTCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEEEETTSCEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEeeccCCcee
Confidence 45677778754 3578888877654332222 222222233332 56677777765 35788999887765
Q ss_pred EcCCCCCCCcc-eEEE-EECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE---CCEEEEEccCC
Q psy17309 632 LIEPMRHRRSG-VSCI-AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI---DDMIFAIGGFN 706 (824)
Q Consensus 632 ~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~ 706 (824)
.+......... .+++ .-++.+++.|+.+ ..+..+|..... +..+.........+.+ +..+++.|+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc
Confidence 55432221111 1222 2367788888754 467888886543 2222222222233333 34577788766
Q ss_pred CCceeeEEEEEECCCC
Q psy17309 707 GVTTIYHVECYDEKTD 722 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~ 722 (824)
+ .+.+||..+.
T Consensus 273 ~-----~v~iwd~~~~ 283 (435)
T 4e54_B 273 Q-----TVKIWDLRQV 283 (435)
T ss_dssp S-----BCCEEETTTC
T ss_pred c-----eeeEEecccc
Confidence 5 4667887664
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.85 E-value=9 Score=44.08 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=94.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCc--eEE-eccCCCC-cceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKV--WKE-IAPMNFK-RCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~-~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
..+++.|+.+ ..+..||..+.. +.. ...+... ..-.+++. .++.+.+.|+.+ ..+.++|..+..-
T Consensus 395 ~~~l~s~s~D-----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D-----g~v~vwd~~~~~~ 464 (694)
T 3dm0_A 395 ADIIVSASRD-----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD-----GELRLWDLAAGVS 464 (694)
T ss_dssp CSEEEEEETT-----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CCEEEEEeCC-----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcc
Confidence 3567777754 357777776532 111 1111111 11112222 266777777754 5688899887653
Q ss_pred EeecCCCcccCc-eEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEE--CC--EEEEEe
Q psy17309 584 SLIAPMNVERSD-ASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY--HE--CIYVIG 656 (824)
Q Consensus 584 ~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~--~iyv~G 656 (824)
... +...... .+++.. ++..++.|+.+ ..+..||.....-..+. .....+....++.+ ++ ..++.|
T Consensus 465 ~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 465 TRR--FVGHTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp EEE--EECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred eeE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 221 1111111 122222 56667777765 46778887554322222 22222222333333 22 466667
Q ss_pred cCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
+.+ ..+.+||+.+.+-... +.........+.+ ++++++.||.++ .+.+||..+.+
T Consensus 538 s~d-----~~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~ 594 (694)
T 3dm0_A 538 SWD-----KTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKDG-----VVLLWDLAEGK 594 (694)
T ss_dssp ETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----BCEEEETTTTE
T ss_pred eCC-----CeEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 654 4688899877653322 1111112222333 678888888765 57788887764
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=89.61 E-value=14 Score=35.38 Aligned_cols=143 Identities=12% Similarity=0.087 Sum_probs=78.4
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCc-EE--ee----cCCCcccCceEEEEE---CCEEEEEcccCCCCcCCc
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ-WS--LI----APMNVERSDASATTL---QGKIYITGGFNGHNCLNS 619 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~--~~----~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~ 619 (824)
+++..++++|+|-| +.+|+++..... .. .+ +.+|. ..-+|.. ++++|+|-| +.
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~---~IDAA~~~~~~~k~yfFkG-------~~ 97 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFFAG-------NE 97 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS---CCSEEEEETTTTEEEEEET-------TE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC---CccEEEEECCCCEEEEEeC-------CE
Confidence 34557999999988 567777654421 11 11 23442 2223332 689999977 56
Q ss_pred eEEEeCCCCe---EEEcC--CCCCCC-cceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEE-----CC-C-CC
Q psy17309 620 CEVYDPECNQ---WTLIE--PMRHRR-SGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-----VP-D-MY 684 (824)
Q Consensus 620 v~~yd~~~~~---W~~~~--~~p~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~-~-~p 684 (824)
.++||..+-. =..+. .+|... .--++.. .++++|++-| +..++||..+++=.. +. . +.
T Consensus 98 yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g 170 (218)
T 1gen_A 98 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNA 170 (218)
T ss_dssp EEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSS
T ss_pred EEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCC
Confidence 7888742100 01121 123211 1223333 3699999988 578999987653111 10 0 11
Q ss_pred CCCcceEEEEEC--CEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 685 NPRSNFAIEVID--DMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 685 ~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.+..--++...+ +++|++=|. ..|.||..+..
T Consensus 171 ~p~~idaAf~~~~~g~~YfFkg~-------~y~~~~~~~~~ 204 (218)
T 1gen_A 171 IPDNLDAVVDLQGGGHSYFFKGA-------YYLKLENQSLK 204 (218)
T ss_dssp CCSSCSEEEECTTTCEEEEEETT-------EEEEEETTEEE
T ss_pred CCCCCCEEEEEcCCCcEEEEECC-------EEEEEECCcee
Confidence 122233444444 899999663 67888876543
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=9.9 Score=41.00 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=80.8
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe--e----cCCCcccCceEEEE---ECCEEEEEcccCCCCcCCce
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL--I----APMNVERSDASATT---LQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~v 620 (824)
+++..+|.+|+|-| ..+|+++.....+.. + +.+|.. .-++. .++++|+|-| +.+
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~---iDAa~~~~~~g~~~fFKg-------~~~ 329 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG---LEAAYEFADRDEVRFFKG-------NKY 329 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS---CCEEEEEGGGTEEEEEET-------TEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC---eeEEEEEcCCCeEEEEeC-------CEE
Confidence 45568999999988 457777665443321 1 234432 22332 2689999977 456
Q ss_pred EEEeCCC---CeEEEcC---CCCCC--CcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC----C
Q psy17309 621 EVYDPEC---NQWTLIE---PMRHR--RSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV----P 681 (824)
Q Consensus 621 ~~yd~~~---~~W~~~~---~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~ 681 (824)
++|+..+ +-=..+. .+|.. ... ++... ++++|+|-| +..|+||..+.+-. .+ +
T Consensus 330 W~~~~~~~~~gyP~~i~~~~g~P~~~~~ID-AA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 330 WAVQGQNVLHGYPKDIYSSFGFPRTVKHID-AALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEETTEECTTCSEEHHHHHCCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEecCCcccCCCceeeehhhcCCCCCCccc-eEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 7776432 1001111 12321 222 22233 699999988 58899997654211 11 1
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 682 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.+| ..--++...++++|+|-|. ..|+||..+.+=.
T Consensus 402 gip--~~iDAA~~~~g~~YFFkg~-------~ywr~d~~~~~v~ 436 (450)
T 1su3_A 402 GIG--HKVDAVFMKDGFFYFFHGT-------RQYKFDPKTKRIL 436 (450)
T ss_dssp TSC--SCCSEEEEETTEEEEEETT-------EEEEEETTTTEEE
T ss_pred CCC--CCccEEEEcCCeEEEEeCC-------EEEEEECCcceEe
Confidence 222 2223444568999999764 6799998776543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.50 E-value=23 Score=37.24 Aligned_cols=196 Identities=8% Similarity=-0.003 Sum_probs=110.2
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC--CCcccCceEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP--MNVERSDASAT 599 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~~~~~ 599 (824)
+.+.++++.......+... ...-.+++.. ++.||+.-- ....++++++.....+.+.. +..+ .+++
T Consensus 96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~gla 165 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLA 165 (386)
T ss_dssp SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC---CCEE
T ss_pred ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc---cEEE
Confidence 5688888888776655432 1223445544 578998743 23679999998887665532 2222 2333
Q ss_pred E--ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q psy17309 600 T--LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 600 ~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
+ .++.||+.-.. .+.+++++++...-+.+. .+..| .+.++. ++.||+.--.. ...|+++++.
T Consensus 166 vd~~~g~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~d 233 (386)
T 3v65_B 166 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 233 (386)
T ss_dssp EETTTTEEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EEeCCCeEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCC
Confidence 3 37899997542 246888887655433332 22222 233333 68899875321 3679999987
Q ss_pred CCCEEECCCCCCCCcceEEEE--ECCEEEEEccCCCCceeeEEEEEECCCCcEEec--cCCCCCccceeEEEEcCcccee
Q psy17309 674 TKTWSQVPDMYNPRSNFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA--TDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 674 ~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
...-+.+..-. ...-.+++. .+++||+.-.. ...|+++|++...=..+ ..++.| .+.++..+.+|+-
T Consensus 234 G~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~P---~giav~~~~ly~t 304 (386)
T 3v65_B 234 GSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGLPHP---FAITVFEDSLYWT 304 (386)
T ss_dssp SCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSSCSSE---EEEEEETTEEEEE
T ss_pred CCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECCCCCc---eEEEEECCEEEEe
Confidence 65433332110 111123443 27899998543 24789999875432322 222222 4555567777765
Q ss_pred c
Q psy17309 750 D 750 (824)
Q Consensus 750 ~ 750 (824)
.
T Consensus 305 d 305 (386)
T 3v65_B 305 D 305 (386)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=88.91 E-value=3.9 Score=39.51 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=77.0
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeC------CCCcEEe--e----cCCC---cccCceEEEE--ECCEEEEEcccCCCCc
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNY------TENQWSL--I----APMN---VERSDASATT--LQGKIYITGGFNGHNC 616 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~------~t~~W~~--~----~~~p---~~r~~~~~~~--~~~~lyv~GG~~~~~~ 616 (824)
.+|.+|+|-| ..+|+++. ....... + +.+| ......-++. .++++|+|-|
T Consensus 12 ~~ge~~fFk~-------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg------ 78 (225)
T 3oyo_A 12 SEYEVYFFAK-------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG------ 78 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET------
T ss_pred CCCEEEEEEC-------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC------
Confidence 3789999987 56788871 1111111 1 2344 1123333443 4899999987
Q ss_pred CCceEEEeCCC----CeEEE----c----CCCCCC--CcceEEE-E--ECCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 617 LNSCEVYDPEC----NQWTL----I----EPMRHR--RSGVSCI-A--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 617 ~~~v~~yd~~~----~~W~~----~----~~~p~~--r~~~~~~-~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
+.+++||..+ +.... + +.+|.. ....-+| . .++++|+|-| +..++||...++-..
T Consensus 79 -~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG-------~~yw~~d~~~~~~~~ 150 (225)
T 3oyo_A 79 -NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG-------NKYVRIAYDSKQLVG 150 (225)
T ss_dssp -TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred -CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-------CeEEEEECCCCeecC
Confidence 4678886522 22211 1 233331 1122233 2 2699999998 578999976655432
Q ss_pred ----CC-CCCC------CCcceEEEE--ECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 680 ----VP-DMYN------PRSNFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 680 ----~~-~~p~------~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+. ..|. +..--++.. .++++|++-|. ..|+||..
T Consensus 151 gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-------~ywr~d~~ 197 (225)
T 3oyo_A 151 NIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ-------NYVRIDFT 197 (225)
T ss_dssp EEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT-------EEEEEECC
T ss_pred CCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCC
Confidence 11 1121 222233444 37999999764 68999987
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=22 Score=36.14 Aligned_cols=214 Identities=9% Similarity=-0.033 Sum_probs=119.7
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCC----CceEEec--cCCCCc
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVT----KVWKEIA--PMNFKR 546 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~--~~~~~r 546 (824)
+.|..+|..+.+...+- +....-+++++. ++.||+.-.. ...++++|+.+ ..-..+. .+..|
T Consensus 10 ~~I~~i~~~~~~~~~~~----~~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEE----CSCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC-
T ss_pred CeEEEEECCCcceEehh----cCCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc-
Confidence 34677777776655431 112334556655 5789998642 35789999876 2222221 12222
Q ss_pred ceEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec--CCCcccCceEEEE--ECCEEEEEcccCCCCcCCce
Q psy17309 547 CYVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA--PMNVERSDASATT--LQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 547 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~v 620 (824)
.++++ .++.||+.-. ..+.++++|+....-+.+. .+..| .++++ .++.||+..-. ....+
T Consensus 80 --~glavd~~~~~ly~~d~-----~~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~----~~~~I 145 (316)
T 1ijq_A 80 --DGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKI 145 (316)
T ss_dssp --CEEEEETTTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----SSCEE
T ss_pred --CEEEEeecCCeEEEEEC-----CCCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC----CCCeE
Confidence 34444 4789999743 2367899998766544332 23333 23344 37899987521 12578
Q ss_pred EEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEECC
Q psy17309 621 EVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVIDD 697 (824)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~ 697 (824)
++++++...-+.+..... ..-.+.+.- +++||+.-.. ...|+++|+....-+.+... .....-.++++.++
T Consensus 146 ~~~~~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~ 219 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 219 (316)
T ss_dssp EEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred EEEcCCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECC
Confidence 999987554433322111 112233433 6899998653 36899999875433333211 11223356677789
Q ss_pred EEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 698 MIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 698 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.||+.--.+ ..|.++|+.+.+
T Consensus 220 ~ly~~d~~~-----~~V~~~~~~~g~ 240 (316)
T 1ijq_A 220 KVFWTDIIN-----EAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTT-----TEEEEEETTTCC
T ss_pred EEEEEECCC-----CeEEEEeCCCCc
Confidence 999986322 378999986654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=22 Score=36.13 Aligned_cols=199 Identities=11% Similarity=0.041 Sum_probs=108.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCC----CcEEee-c-CCCcccCc
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTE----NQWSLI-A-PMNVERSD 595 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~-~-~~p~~r~~ 595 (824)
+.+.++|+.+.....+.+ ....-++++.. ++.||+.... ...++++++.+ ..-+.+ . .+..+
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p--- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc---
Confidence 568889998877665432 22233455554 5799998642 36789999876 222222 1 22222
Q ss_pred eEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEE
Q psy17309 596 ASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 596 ~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 669 (824)
.++++ .++.||+.-.. .+.++++|+....-..+. .+..| .+.++. ++.||+..-.. ...|++
T Consensus 80 ~glavd~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~----~~~I~~ 147 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----PAKIKK 147 (316)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----SCEEEE
T ss_pred CEEEEeecCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----CCeEEE
Confidence 34444 47899997432 357889998765433332 22222 233333 68899886321 257999
Q ss_pred EeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCC-CCccceeEEEEcCcc
Q psy17309 670 YNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN-IYRSALSACVIMGLP 746 (824)
Q Consensus 670 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~~ 746 (824)
+++....-+.+.... -..-.+++.- +++||+.-.. .+.|+++|++...-+.+...+ ....-.+.++.++.+
T Consensus 148 ~~~dG~~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~l 221 (316)
T 1ijq_A 148 GGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221 (316)
T ss_dssp EETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEE
T ss_pred EcCCCCCeEEEEECC-CCCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEE
Confidence 998765443332111 1112234433 6899998543 247899998764333332211 112224556666777
Q ss_pred ceec
Q psy17309 747 NVYD 750 (824)
Q Consensus 747 ~~~~ 750 (824)
|+-.
T Consensus 222 y~~d 225 (316)
T 1ijq_A 222 FWTD 225 (316)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.75 E-value=5.3 Score=37.64 Aligned_cols=142 Identities=10% Similarity=0.091 Sum_probs=78.0
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--E-Eee----cCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEE
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--W-SLI----APMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W-~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y 623 (824)
++..+|.+|+|-| +.+|+++...-. . ..+ +.+|.. -..+....++++|+|-| +..++|
T Consensus 11 ~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg-------~~yw~~ 75 (196)
T 3c7x_A 11 VAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKG-------DKHWVF 75 (196)
T ss_dssp EEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEET-------TEEEEE
T ss_pred EEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecC-------CEEEEE
Confidence 4467899999988 568888643200 0 111 234542 22222123788999977 456788
Q ss_pred eCCCCe---EEEcC----CCCCCCcceEEEE-ECCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC---CCCCCCC
Q psy17309 624 DPECNQ---WTLIE----PMRHRRSGVSCIA-YHECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV---PDMYNPR 687 (824)
Q Consensus 624 d~~~~~---W~~~~----~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~---~~~p~~r 687 (824)
+..+.. =..+. .+|.....++... .++++|++-| +..++||..+++-. .+ +.+| .
T Consensus 76 ~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip--~ 146 (196)
T 3c7x_A 76 DEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIP--E 146 (196)
T ss_dssp ETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCC--S
T ss_pred eCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcC--C
Confidence 753211 11222 2443223322222 2699999988 57899998764311 11 1222 2
Q ss_pred cceEEEEE-CC-EEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 688 SNFAIEVI-DD-MIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 688 ~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.--++... ++ ++|++=|. ..|.||..+.+
T Consensus 147 ~idaAf~~~~~~~~YfFkg~-------~y~r~d~~~~~ 177 (196)
T 3c7x_A 147 SPRGSFMGSDEVFTYFYKGN-------KYWKFNNQKLK 177 (196)
T ss_dssp SCSEEEECTTSSEEEEEETT-------EEEEEETTTTE
T ss_pred CcceeEEecCCCEEEEEECC-------EEEEEECCcce
Confidence 22333333 44 99999663 68999987754
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=88.73 E-value=0.18 Score=47.36 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=44.0
Q ss_pred eecccchhhhheeecccceecCHh-hHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 252 NYTENQDKIEEKKLFERKLHITED-NVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 252 ~~~~~~~~~ll~~~Yt~~l~l~~~-~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
|=++..|+.||+|+-+|++.+..+ ....++.-|.+|+|+.|++.|.+.|.+
T Consensus 61 DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 61 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 668999999999999999988665 347899999999999999999987754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.61 E-value=26 Score=36.77 Aligned_cols=212 Identities=12% Similarity=0.020 Sum_probs=119.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA 552 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 552 (824)
..+..+++.......+.. ......+++.. ++.||+.-- ....++++++.......+........ .+++
T Consensus 96 ~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p-~gla 165 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP-GGLA 165 (386)
T ss_dssp SCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC-CCEE
T ss_pred ccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc-cEEE
Confidence 356777777665544311 12234455554 688998753 23579999998877655432221111 2233
Q ss_pred E--ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec--CCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 553 V--HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA--PMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 553 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
+ .++.||+.-.. .+.++++++....-+.+. .+..| .++++- ++.||+.--.. ...++++++.
T Consensus 166 vd~~~g~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~d 233 (386)
T 3v65_B 166 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 233 (386)
T ss_dssp EETTTTEEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EEeCCCeEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCC
Confidence 3 37899998542 357888888765433332 22222 233333 68999874211 3679999987
Q ss_pred CCeEEEcCCCCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEEC-C-CCCCCCcceEEEEECCEEEEE
Q psy17309 627 CNQWTLIEPMRHRRSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-P-DMYNPRSNFAIEVIDDMIFAI 702 (824)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~-~~p~~r~~~~~~~~~~~i~v~ 702 (824)
...-+.+..-.. ..-.+.+. .+++||+.-.. ...|+++|+....-+.+ . .++ .-.++++.++.||+.
T Consensus 234 G~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~---~P~giav~~~~ly~t 304 (386)
T 3v65_B 234 GSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGLP---HPFAITVFEDSLYWT 304 (386)
T ss_dssp SCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSSCS---SEEEEEEETTEEEEE
T ss_pred CCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECCCC---CceEEEEECCEEEEe
Confidence 654333321111 11123333 36899998643 36899999875432222 2 222 235666689999998
Q ss_pred ccCCCCceeeEEEEEECCCC
Q psy17309 703 GGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~ 722 (824)
.-.+ ..|.++|..+.
T Consensus 305 d~~~-----~~V~~~~~~~G 319 (386)
T 3v65_B 305 DWHT-----KSINSANKFTG 319 (386)
T ss_dssp ETTT-----TEEEEEETTTC
T ss_pred eCCC-----CeEEEEECCCC
Confidence 5322 36888985444
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=88.47 E-value=36 Score=38.25 Aligned_cols=187 Identities=15% Similarity=0.110 Sum_probs=99.3
Q ss_pred EEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec-
Q psy17309 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA- 587 (824)
Q Consensus 511 lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~- 587 (824)
.++.|+.+ ..+..||..+.+.. ..+...... .+++.. ++.+++.||.+ ..+..+|..+.+-...-
T Consensus 162 ~l~s~s~D-----~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D-----~~i~lwd~~~g~~~~~~~ 229 (611)
T 1nr0_A 162 RIISGSDD-----NTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVFE 229 (611)
T ss_dssp EEEEEETT-----SCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEECB
T ss_pred EEEEEeCC-----CeEEEEECCCCeEe--eeeccccCceEEEEECCCCCEEEEEECC-----CcEEEEECCCCcEeeeec
Confidence 45666654 34777887654432 222222221 222222 67788888754 45888888776643221
Q ss_pred CC-----CcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCC-CcceEEEEECCEEEEEecCCC
Q psy17309 588 PM-----NVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHR-RSGVSCIAYHECIYVIGGFNG 660 (824)
Q Consensus 588 ~~-----p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~ 660 (824)
.. .....-.+++.. +++.++.||.+ ..+..||..+.+....-+.... ......+..++..++.++.+
T Consensus 230 ~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d- 303 (611)
T 1nr0_A 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN- 303 (611)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT-
T ss_pred cccccccccCCCEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC-
Confidence 10 111111122222 67777788765 4688999988776443222211 11222334466666666654
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
..+..+|+.+.+-... +.........+.+ +++.++.|+.++ .+.+||..+..-..
T Consensus 304 ----~~i~~~~~~~~~~~~~--~~gh~~~v~~l~~spdg~~l~s~s~D~-----~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 304 ----GFINFVNPELGSIDQV--RYGHNKAITALSSSADGKTLFSADAEG-----HINSWDISTGISNR 360 (611)
T ss_dssp ----CCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred ----CcEEEEeCCCCCcceE--EcCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceee
Confidence 3567788776542221 1111111222333 677888888765 57889988776544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=88.42 E-value=6.4 Score=44.97 Aligned_cols=195 Identities=8% Similarity=-0.036 Sum_probs=103.8
Q ss_pred ceEEEEECC--C-CceEEeccCCC---CcceEEEEE-ECCEEEEEecccCC-----CCCCeEEEEeCCC------CcEEe
Q psy17309 524 NSCRCFNAV--T-KVWKEIAPMNF---KRCYVSTAV-HQDVIYAMGGYNGQ-----RRQNSVEKYNYTE------NQWSL 585 (824)
Q Consensus 524 ~~~~~yd~~--~-~~W~~~~~~~~---~r~~~~~~~-~~~~iyv~GG~~~~-----~~~~~~~~yd~~t------~~W~~ 585 (824)
..+|.+|.. + +.-..+...+. .......+. -+|+.++++..+.. .....++++|..+ ...+.
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 568999987 4 66666665431 111122222 35654444443210 2235789999988 66555
Q ss_pred ec-CCCcccCceEEEEECCEEEEEcccCCCC---cCCceEEEeCC-CC---eEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q psy17309 586 IA-PMNVERSDASATTLQGKIYITGGFNGHN---CLNSCEVYDPE-CN---QWTLIEPMRHRRSGVSCIAY-HECIYVIG 656 (824)
Q Consensus 586 ~~-~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~-~~---~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 656 (824)
+. .-+. ........-+|+..++...+... ....++.+|.. ++ ....+..-.. ......+.. +|++|+.+
T Consensus 182 l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 182 LSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSCEEEEE
T ss_pred EEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCeEEEEE
Confidence 54 2221 11111122256544444433211 12579999998 56 3443322111 111222222 67888776
Q ss_pred cCCCCCccceEEEEeCCCCCEEECCCCCCCC----c---ceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 657 GFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR----S---NFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r----~---~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
..++ ...++.+|+.+.+++.+....... . ...++.. ++++++.+.. + ...++.+|.++...+.+
T Consensus 260 ~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 260 DRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G---AAVLGILDPESGELVDA 331 (662)
T ss_dssp CTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---SCEEEEEETTTTEEEEC
T ss_pred CCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---ccEEEEEECCCCcEEEe
Confidence 6432 347999999889998875432111 1 1123333 6788877754 2 24788889988877766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=9.6 Score=42.69 Aligned_cols=188 Identities=10% Similarity=-0.013 Sum_probs=97.7
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCC--CCcEE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYT--ENQWS 584 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~--t~~W~ 584 (824)
+.+||... ..+.+..+|+.+++-.. .++....-|.++.. +..+|+.+. ...+..||+. +.+
T Consensus 167 ~~~~V~~~-----~~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~-- 231 (567)
T 1qks_A 167 NLFSVTLR-----DAGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPT-- 231 (567)
T ss_dssp GEEEEEET-----TTTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCC--
T ss_pred ceEEEEeC-----CCCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCc--
Confidence 46666653 23679999999876432 22233333444443 346777542 2579999995 443
Q ss_pred eecCCCcccCceEEEEE-----CC-EEEEEcccCCCCcCCceEEEeCCCCeEEEc-C--CC--------CCCCcceEEEE
Q psy17309 585 LIAPMNVERSDASATTL-----QG-KIYITGGFNGHNCLNSCEVYDPECNQWTLI-E--PM--------RHRRSGVSCIA 647 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~--~~--------p~~r~~~~~~~ 647 (824)
.+..++....-..++.. +| .+|+..-. .+.+.++|..+.+=... + .+ |.+|.....+.
T Consensus 232 ~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 232 TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred EeEEEecCCCCceeEEccccCCCCCEEEEEEcc-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence 33333333222344444 44 56665432 25678889777553222 1 11 12333322222
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 648 YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 648 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
.++..+++-= .....++..|........+..++..+.-|....- +++.+++.-. ..+.+.++|.++++=
T Consensus 307 ~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~----~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 307 HYRPEFIVNV----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN----ARNKLVVIDTKEGKL 376 (567)
T ss_dssp SSSSEEEEEE----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG----GGTEEEEEETTTTEE
T ss_pred CCCCEEEEEe----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC----CCCeEEEEECCCCcE
Confidence 3334444321 1135788888877665555444455555544332 4444333221 234788899988753
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.38 E-value=0.82 Score=38.46 Aligned_cols=85 Identities=8% Similarity=0.053 Sum_probs=54.5
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
...+.+|+.++.+.+.+|.........-.. ..+.+..-+. ...+...+|+-.
T Consensus 21 ~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~---------------~~i~l~~~~~-------------~~f~~~l~~iYt 72 (109)
T 2vkp_A 21 TRTVPAHKYVLAVGSSVFYAMFYGDLAEVK---------------SEIHIPDVEP-------------AAFLILLKYMYS 72 (109)
T ss_dssp CEEEEECHHHHHHHCHHHHHHHC------C---------------CEEEETTSCH-------------HHHHHHHHHHHH
T ss_pred cEEEEeeHHHHHHcCHHHHHHhcCCcccCC---------------CeEEeCCCCH-------------HHHHHHHHHHcC
Confidence 357888888888888888654332211100 2333322111 122233344533
Q ss_pred ---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17309 303 ---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRN 335 (824)
Q Consensus 303 ---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~ 335 (824)
.++.+|+..++.+|+.++++.|.+.|.+|+.++
T Consensus 73 ~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 73 DEIDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 477899999999999999999999999999876
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=6 Score=42.72 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=81.3
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEE--ec----cCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE--IA----PMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (824)
+++..++.+|+|-| +.+|+++.....+.. +. .+|.. .. ++... ++++|+|-| +.+|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg-------~~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG-------NKYW 330 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-------CEEE
Confidence 55567999999988 557777765444332 11 22321 12 22222 689999988 5788
Q ss_pred EEeCCCCc--E-Eeec---CCCcccCceEEEE-E--CCEEEEEcccCCCCcCCceEEEeCCCCeEE-----Ec----CCC
Q psy17309 575 KYNYTENQ--W-SLIA---PMNVERSDASATT-L--QGKIYITGGFNGHNCLNSCEVYDPECNQWT-----LI----EPM 636 (824)
Q Consensus 575 ~yd~~t~~--W-~~~~---~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 636 (824)
+|+..+-. + ..+. .+|......-+|. . ++++|+|-| +..++||..+.+-. .+ +.+
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCC
Confidence 88743210 0 1111 1222112222332 2 689999977 56889987654322 11 122
Q ss_pred CCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 637 RHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 637 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
|. .--++...++++|.|-| +..++||..+.+
T Consensus 404 p~--~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~ 434 (450)
T 1su3_A 404 GH--KVDAVFMKDGFFYFFHG-------TRQYKFDPKTKR 434 (450)
T ss_dssp CS--CCSEEEEETTEEEEEET-------TEEEEEETTTTE
T ss_pred CC--CccEEEEcCCeEEEEeC-------CEEEEEECCcce
Confidence 22 22344456899999988 578999987654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=88.19 E-value=9.8 Score=38.41 Aligned_cols=195 Identities=10% Similarity=-0.005 Sum_probs=98.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.||+.+-. ...+++|++ ++....+... .. ...+++.- +|++|+.... ...+.+||+. .+.+.+
T Consensus 56 g~~l~~~d~~-----~~~i~~~~~-~g~~~~~~~~-~~-~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 56 QRTLVWSDLV-----GRRVLGWRE-DGTVDVLLDA-TA-FTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLL 121 (305)
T ss_dssp GTEEEEEETT-----TTEEEEEET-TSCEEEEEES-CS-CEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEE
T ss_pred CCEEEEEECC-----CCEEEEEeC-CCCEEEEeCC-CC-ccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEE
Confidence 3457776532 256888998 4544443321 11 12233332 6788876421 2468899986 666655
Q ss_pred cCCCc-cc--CceEEEE-ECCEEEEE----cccCC--------CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-C
Q psy17309 587 APMNV-ER--SDASATT-LQGKIYIT----GGFNG--------HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-H 649 (824)
Q Consensus 587 ~~~p~-~r--~~~~~~~-~~~~lyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 649 (824)
..... .+ .-..+++ -+|.||+. |-... ......+++||+.+++++.+. ... ...+.+.. +
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES-SEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCC
Confidence 33211 11 1112332 37889985 32210 011357899999888877664 111 11223333 4
Q ss_pred C-EEEEEecCCCCCccceEEEEeCCCCCEEE---CCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 650 E-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQ---VPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 650 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+ .||+............+++||...+.... ....+.. .-.+++. -+++||+..+ ..+.+||++...-
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~ 270 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG-LPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLL 270 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS-CCCSEEECTTSCEEECCS-------SEEEEECTTSCEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC-CCCeEEECCCCCEEEecC-------CcEEEECCCCCEE
Confidence 4 48877542211112578899887543221 1111111 1112222 3677777652 2489999976655
Q ss_pred Eec
Q psy17309 725 YEA 727 (824)
Q Consensus 725 ~~~ 727 (824)
..+
T Consensus 271 ~~~ 273 (305)
T 3dr2_A 271 GHI 273 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=88.08 E-value=12 Score=37.90 Aligned_cols=176 Identities=16% Similarity=0.229 Sum_probs=90.2
Q ss_pred ECCEEEEEeecCCCcccceEEEEECC-CCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCC-cE
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAV-TKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTEN-QW 583 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W 583 (824)
.++.||+... ...+++||+. ...|......+. ..+.+.. ++.||+... ...+++||+... .|
T Consensus 106 ~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~vgt~------~~~l~~~d~~g~~~~ 170 (330)
T 3hxj_A 106 FEDILYVTSM------DGHLYAINTDGTEKWRFKTKKAI---YATPIVSEDGTIYVGSN------DNYLYAINPDGTEKW 170 (330)
T ss_dssp ETTEEEEECT------TSEEEEECTTSCEEEEEECSSCC---CSCCEECTTSCEEEECT------TSEEEEECTTSCEEE
T ss_pred ECCEEEEEec------CCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCCCEEEEEcC------CCEEEEECCCCCEeE
Confidence 3888887532 2468999988 334665432221 1122333 677777431 256899998832 36
Q ss_pred EeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCC-CeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCC
Q psy17309 584 SLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPEC-NQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNG 660 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 660 (824)
+...+ ..... +.+. -++.||+.. ..+.+||... ..|+..... .. ..+.+.. ++.||+...
T Consensus 171 ~~~~~--~~~~~-~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~--- 233 (330)
T 3hxj_A 171 RFKTN--DAITS-AASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL--- 233 (330)
T ss_dssp EEECS--SCCCS-CCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET---
T ss_pred EEecC--CCcee-eeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC---
Confidence 54322 22222 2233 367888753 4588898442 347654321 11 1222333 457887542
Q ss_pred CCccceEEEEeCCCCC-EEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCC-cEEe
Q psy17309 661 MSRMCNGEKYNPVTKT-WSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTD-EWYE 726 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~ 726 (824)
...+.+||+.... |..-..- .... +.+.- ++.||+... ++ .+.+||++.. .|..
T Consensus 234 ---~~gl~~~~~~g~~~~~~~~~~--~~~~-~~~~~~~g~l~v~t~-~g-----gl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 234 ---DGHLYAINPDGTEKWRFKTGK--RIES-SPVIGNTDTIYFGSY-DG-----HLYAINPDGTEKWNF 290 (330)
T ss_dssp ---TTEEEEECTTSCEEEEEECSS--CCCS-CCEECTTSCEEEECT-TC-----EEEEECTTSCEEEEE
T ss_pred ---CCeEEEECCCCCEeEEeeCCC--Cccc-cceEcCCCeEEEecC-CC-----CEEEECCCCcEEEEE
Confidence 1467888875443 5443211 1111 22223 677777532 21 5788887433 4553
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=88.06 E-value=38 Score=37.99 Aligned_cols=181 Identities=8% Similarity=0.064 Sum_probs=95.4
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEec-cC-----CCCcc
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA-PM-----NFKRC 547 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~-----~~~r~ 547 (824)
..+..||..+.+.... .. .....-.+++.. ++.+++.||.+ ..+..||..+++-...- .. .....
T Consensus 170 ~~v~lwd~~~~~~~~~--l~-~H~~~V~~v~fspdg~~las~s~D-----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKST--FG-EHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp SCEEEEETTTBEEEEE--EC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred CeEEEEECCCCeEeee--ec-cccCceEEEEECCCCCEEEEEECC-----CcEEEEECCCCcEeeeeccccccccccCCC
Confidence 3467778666544321 10 011122233333 67778888765 45888998877643221 10 11111
Q ss_pred eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-cCceEEEEECCEEEEEcccCCCCcCCceEEEeC
Q psy17309 548 YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 548 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
-.+++.. ++..++.||.+ ..+..+|..+.+....-+.... ......+..++..++.++.+ ..+..+|+
T Consensus 242 V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~i~~~~~ 311 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN-----GFINFVNP 311 (611)
T ss_dssp EEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT-----CCEEEEET
T ss_pred EEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC-----CcEEEEeC
Confidence 1223332 67777777754 5688999988776443222111 11222333466666666654 35778888
Q ss_pred CCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 626 ECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 626 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
.+..-... +........++.+ +++.++.|+.+ ..+..+|..+..-...
T Consensus 312 ~~~~~~~~--~~gh~~~v~~l~~spdg~~l~s~s~D-----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 312 ELGSIDQV--RYGHNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNRV 361 (611)
T ss_dssp TTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEC
T ss_pred CCCCcceE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeee
Confidence 77653222 1111222223333 67777777764 4678899887765543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=8.6 Score=43.36 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=69.5
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeC-CCCc--EEeecCCCc-----cc---CceEEEE--ECCE----EEEEcccCC
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNY-TENQ--WSLIAPMNV-----ER---SDASATT--LQGK----IYITGGFNG 613 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~p~-----~r---~~~~~~~--~~~~----lyv~GG~~~ 613 (824)
-++.++.||+.+.. ...++.+|. .+.+ |+.-...+. .+ ...+.++ .+++ ||+...
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 35679999998652 246899999 7764 887543321 11 1123444 5676 887532
Q ss_pred CCcCCceEEEeCCCCe--EEEcCCCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEEC
Q psy17309 614 HNCLNSCEVYDPECNQ--WTLIEPMRHR--RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQV 680 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~--W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (824)
...+..+|.+|++ |+.-..-+.. ....+-++.+++||+-.+..+......+..||.++.+ |+.-
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 ---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2468999988775 8754221100 1112234568888765432111123578999998765 8754
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=19 Score=37.21 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=78.4
Q ss_pred CCCCceE--EeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEE-EeC-----CCCcE-EeecC-CCcccCceEEEE
Q psy17309 531 AVTKVWK--EIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK-YNY-----TENQW-SLIAP-MNVERSDASATT 600 (824)
Q Consensus 531 ~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-yd~-----~t~~W-~~~~~-~p~~r~~~~~~~ 600 (824)
.....|+ +++..|..-.-|+.|.+++.=|++|=.+++.....+=. |-+ ....- +.++. ....-+-.++-.
T Consensus 267 F~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvky 346 (670)
T 3ju4_A 267 FHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKY 346 (670)
T ss_dssp STTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEE
T ss_pred eccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhh
Confidence 3456676 45666766777999999998899986666554444322 211 11111 22322 222233445556
Q ss_pred ECCEEEEEc-ccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEECCEEEEEec
Q psy17309 601 LQGKIYITG-GFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 601 ~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
++|.||++- |..+...-..+.+-+.....|+.+. |-.........+.+++.||+||-
T Consensus 347 YdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 347 YDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp ETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEE
T ss_pred hCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEec
Confidence 799999885 4444344567778877788899885 22223344456788999999996
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.89 E-value=18 Score=36.84 Aligned_cols=186 Identities=12% Similarity=-0.005 Sum_probs=95.7
Q ss_pred ccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 522 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 522 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
....++.+|..+++-..+ .........-+|+..++...........++.+|..+.+...+...+. ....+..
T Consensus 41 ~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~ws 112 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWN 112 (347)
T ss_dssp EEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEEC
T ss_pred ccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeEC
Confidence 456799999998876655 11111122225544444433221123468999998888776654443 2222222
Q ss_pred -CCEEEEEcccC------------------CC----CcCCceEEEeCCCCeE-EEcCCCCCCCcceEEEEECCEEEEEec
Q psy17309 602 -QGKIYITGGFN------------------GH----NCLNSCEVYDPECNQW-TLIEPMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 602 -~~~lyv~GG~~------------------~~----~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
+++.+++...+ +. .....++.+|+.+++. ..+.. + .....+...+.+++.+.
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~ 188 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVP 188 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEe
Confidence 55433443321 00 1135688999998887 55554 3 22233333333655554
Q ss_pred CCCCC---c-cceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCC---ceeeEEEEEECCCCcEEec
Q psy17309 658 FNGMS---R-MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV---TTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 658 ~~~~~---~-~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~v~~yd~~~~~W~~~ 727 (824)
..... . ...++.+| +.+++.+..- .......-+++.+++++.... .....++++| +.++..+
T Consensus 189 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp CCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred cccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 33221 1 45788888 6666665431 112222446654444433221 1235789998 6667665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.63 E-value=0.31 Score=51.72 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=57.9
Q ss_pred ECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC--c
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--Q 582 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~ 582 (824)
.++.||+.+. + ..++++|..+++ |+.-. .. ...+.+..++.+|+.|+.+ ..++.+|..+. .
T Consensus 8 ~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--DP--VLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--CC--SCCCC-----CCEEECTTT-----CCEEEC-----CCS
T ss_pred eCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--CC--ceecceEcCCCEEEEeCCC-----CEEEEEECCCCcee
Confidence 3666666542 2 469999998876 77543 11 1112234567788876533 45889998654 4
Q ss_pred EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCC
Q psy17309 583 WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNG 660 (824)
Q Consensus 583 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 660 (824)
|+.-...+.......+...++.||+ |+.+ ..+..+|+.+++ |+.-..-. ...+..++.||+. +.
T Consensus 73 w~~~~~~~~~~~~sp~~~~~~~v~~-g~~d-----g~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~-~~-- 138 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRSSDGILYM-GKKQ-----DIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLG-RT-- 138 (369)
T ss_dssp EECSCCHHHHHTTCSCC-----CCC-CEEE-----EEEEEECCC---------------------------EEEE-EE--
T ss_pred eeeeccCccccccCceEecCCEEEE-EeCC-----CEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEE-ec--
Confidence 7643222111111111113555554 4322 468889988764 65432111 0112244555554 32
Q ss_pred CCccceEEEEeCCCCC--EEE
Q psy17309 661 MSRMCNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~--W~~ 679 (824)
...+..+|+.+.+ |+.
T Consensus 139 ---dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 139 ---EYTITMYDTKTRELRWNA 156 (369)
T ss_dssp ---EEEEECCCSSSSSCCCEE
T ss_pred ---CCEEEEEECCCCCEEEeE
Confidence 2467888887654 764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.32 E-value=32 Score=36.32 Aligned_cols=149 Identities=7% Similarity=-0.043 Sum_probs=77.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+++.|+.+ ..+..||..+.+-...-..+ ....-.+++.. ++..++.|+.+ ..+.+||..+.+...
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCccEEE
Confidence 35667777654 46889999886643221111 11122222222 56777777754 458899998865432
Q ss_pred ecCCCcccCceEEEEE-----CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc-C-C---C------C------------
Q psy17309 586 IAPMNVERSDASATTL-----QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI-E-P---M------R------------ 637 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~-----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~-~---~------p------------ 637 (824)
.-.++....-.+++.. ++.+++.|+.+ ..+..||..+.+-... . . . |
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 2111211111111111 35566666644 3678888876652211 0 0 0 0
Q ss_pred --CCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 638 --HRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 638 --~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
....-.+++..++.+++.||.+ ..+.+||..+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 361 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEAT-----SSIVMFSLNELS 361 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGG-----TEEEEEETTCGG
T ss_pred cccCCceEEEEECCceEEEecCCC-----CeEEEEECCCcc
Confidence 0011122334478888888864 467888887654
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.57 Score=39.33 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=33.6
Q ss_pred ceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCC
Q psy17309 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 305 (824)
Q Consensus 269 ~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~ 305 (824)
.-.++.+|+..++..|+.|.+++|.+.|.+|+.+++.
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999999999999988764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=86.72 E-value=32 Score=35.71 Aligned_cols=178 Identities=11% Similarity=0.137 Sum_probs=89.7
Q ss_pred ceEEEEECCCCcEEEcccCCCCCC--CceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCC--ceEEeccCCCCcce
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGP--RAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTK--VWKEIAPMNFKRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~ 548 (824)
..+..||..+.+-...-....+.. ..-.++... ++.+++.|+.+ ..+..||.... .-..+..-.. . -
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----~~v~~wd~~~~~~~~~~~~~h~~-~-v 252 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----TTVRLWDLRITSRAVRTYHGHEG-D-I 252 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----SCEEEEETTTTCCCCEEECCCSS-C-C
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----CeEEEEECCCCCcceEEECCcCC-C-e
Confidence 457788888776544211121111 111222221 56788888865 35888897632 1222211111 1 1
Q ss_pred EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCc----ccC-ceEEEE-ECCEEEEEcccCCCCcCCce
Q psy17309 549 VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNV----ERS-DASATT-LQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 549 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~----~r~-~~~~~~-~~~~lyv~GG~~~~~~~~~v 620 (824)
.+++.. ++..++.|+.+ ..+..||..+..-... ...+. ... -.+++. .++++++.|+.+ ..+
T Consensus 253 ~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i 322 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----GDC 322 (380)
T ss_dssp CEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----SCE
T ss_pred EEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----CCE
Confidence 122222 56777777754 4578889887654322 11111 111 112222 267777777654 468
Q ss_pred EEEeCCCCeEE-EcCCCCCC---CcceEEEEECCEEEEEecCCCCCccceEEEEeCCC
Q psy17309 621 EVYDPECNQWT-LIEPMRHR---RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 621 ~~yd~~~~~W~-~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
..||..+.+-. .+..+... +....+..-++..++.||.+ ..+.++|...
T Consensus 323 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-----~~i~iW~~~~ 375 (380)
T 3iz6_a 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD-----KNLKIWAFSG 375 (380)
T ss_dssp EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT-----SCEEEEECCS
T ss_pred EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC-----CCEEEEecCC
Confidence 89998776543 22222221 11111222367888888865 3566676654
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=86.70 E-value=23 Score=33.89 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=79.7
Q ss_pred eEEEEECCEEEEEeecCCCcccceEEEEECCCCc-eE--Eec----cCCCCcceEEEEE-ECCEEEEEecccCCCCCCeE
Q psy17309 502 HGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV-WK--EIA----PMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 502 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W~--~~~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++...++.+|+|=| +.+|+++..... .. .+. .+|. ...++... .++++|+|-| +..
T Consensus 34 DAi~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 34 DGIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp SEEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEE
T ss_pred eEEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEE
Confidence 345556899999988 567777655422 11 121 2232 22222222 2689999988 678
Q ss_pred EEEeCCCCc--E-EeecC--CCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----cC-C-CCC
Q psy17309 574 EKYNYTENQ--W-SLIAP--MNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----IE-P-MRH 638 (824)
Q Consensus 574 ~~yd~~t~~--W-~~~~~--~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~-~-~p~ 638 (824)
|+||..+.. + +.+.. +|.......+|.. ++++|+|-| +..++||..+++-.. +. . +..
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g~ 171 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAI 171 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCCC
Confidence 999853110 0 11111 2221112233332 689999977 568899987764221 11 0 111
Q ss_pred CCcceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 639 RRSGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 639 ~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
+..-.++...+ +.+|.+-| +..++||..+..
T Consensus 172 p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 172 PDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp CSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred CCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 22223444444 89999988 577888876443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=86.16 E-value=10 Score=40.60 Aligned_cols=146 Identities=8% Similarity=0.066 Sum_probs=71.8
Q ss_pred CEEEEEecccCCCCCCeEEEEeCCCC--------cEEeecCCCc-ccCceEEEEE-CCE-EEEEcccCCCCcCCceEEEe
Q psy17309 556 DVIYAMGGYNGQRRQNSVEKYNYTEN--------QWSLIAPMNV-ERSDASATTL-QGK-IYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~t~--------~W~~~~~~p~-~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~v~~yd 624 (824)
+.+++.|+.+ ..+.+||..+. ....+..+.. .....+++.. ++. +++.|+.+ ..+..||
T Consensus 141 ~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd 210 (430)
T 2xyi_A 141 ACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD-----HTICLWD 210 (430)
T ss_dssp EEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT-----SCEEEEE
T ss_pred CcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC-----CeEEEEe
Confidence 4677777643 35888887652 1221111111 1112223332 334 67777655 4688888
Q ss_pred CCCC---eEEE--cCCCCCCCc-ceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCC-EEECCCCCCCCcceEEEEE
Q psy17309 625 PECN---QWTL--IEPMRHRRS-GVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKT-WSQVPDMYNPRSNFAIEVI 695 (824)
Q Consensus 625 ~~~~---~W~~--~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~ 695 (824)
..+. .+.. ...+..... -..++.. ++.+++.|+.+ ..+.+||+.+.. ...+..+........++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 8762 1221 111111111 2222322 56677777653 578899987652 1111111111122223333
Q ss_pred ---CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 696 ---DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 696 ---~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+..+++.|+.++ .+.+||..+
T Consensus 286 ~p~~~~~l~tg~~dg-----~v~vwd~~~ 309 (430)
T 2xyi_A 286 NPYSEFILATGSADK-----TVALWDLRN 309 (430)
T ss_dssp CSSCTTEEEEEETTS-----EEEEEETTC
T ss_pred CCCCCCEEEEEeCCC-----eEEEEeCCC
Confidence 334888888765 588888876
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=86.07 E-value=0.22 Score=42.30 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=42.7
Q ss_pred eeecceEEEE---cccccccccceeEEeeecccchhhhheeecccc-----------eecCHhhHHHHHHHHhhcCh
Q psy17309 227 AVHQDVIYAM---GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERK-----------LHITEDNVASLLLATDFFCM 289 (824)
Q Consensus 227 ~~~~~~~~~~---~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~-----------l~l~~~~v~~ll~~a~~~~i 289 (824)
+..+..+..| .|.+.+.....|.+++++..+++.+++|++.-. -.+..+++.+|+.||++|+|
T Consensus 36 A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 36 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 3444444444 134455556789999999999999999986533 25788899999999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=85.78 E-value=35 Score=35.27 Aligned_cols=152 Identities=8% Similarity=-0.046 Sum_probs=79.9
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI 633 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 633 (824)
+|++.++++.+ .-..+.++|+.+.+-....... ..-.+++.. ++++++.|+. +.+.+++..++.....
T Consensus 144 Dg~~la~as~~---~d~~i~iwd~~~~~~~~~~~~~--~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 144 EGTVAAIASSK---VPAIMRIIDPSDLTEKFEIETR--GEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIAR 212 (365)
T ss_dssp TSSCEEEEESC---SSCEEEEEETTTTEEEEEEECS--SCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEE
T ss_pred CCCEEEEEECC---CCCEEEEeECCCCcEEEEeCCC--CceEEEEEccCCceEEeccc------eeEEEEEeccCcceee
Confidence 56655544321 1256888999887654332211 112223332 6676666652 3567787777665433
Q ss_pred CCCCCCCcceEEE--EECCEEEEEecCCCCCccceEEEEeCCCCCEEECC--CCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 634 EPMRHRRSGVSCI--AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP--DMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 634 ~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
............+ .-+++.++.++.++.. ...+..+|.......... .+........++.+ ++++++.|+.++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 3222222222233 2378888887754322 224566666555543321 11111111222333 788999998765
Q ss_pred CceeeEEEEEECCCCc
Q psy17309 708 VTTIYHVECYDEKTDE 723 (824)
Q Consensus 708 ~~~~~~v~~yd~~~~~ 723 (824)
.|.+||..+.+
T Consensus 292 -----~V~iwd~~~~~ 302 (365)
T 4h5i_A 292 -----SIALVKLKDLS 302 (365)
T ss_dssp -----CEEEEETTTTE
T ss_pred -----EEEEEECCCCc
Confidence 58899988754
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=85.72 E-value=22 Score=37.10 Aligned_cols=145 Identities=8% Similarity=0.004 Sum_probs=79.9
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCcE--Eee----cCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEE
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQW--SLI----APMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~y 623 (824)
++..++++|+|=| +.+|+++.....- ..+ +.+|.. ...+... .++++|+|-| +..++|
T Consensus 186 v~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iDAa~~~~~~g~~~fFkg-------~~yWr~ 250 (365)
T 3ba0_A 186 VTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPSG-IEAAYEIEARNQVFLFKD-------DKYWLI 250 (365)
T ss_dssp EEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCSS-CCEEEEEGGGTEEEEEET-------TEEEEC
T ss_pred EEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCCC-ccEEEEecCCCEEEEEeC-------CEEEEE
Confidence 3456899999977 5677776544221 111 234522 2222222 2789999977 445666
Q ss_pred eCCCCe--E-EEcCC--CCCCC-cceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEE-----C----CCCCCC
Q psy17309 624 DPECNQ--W-TLIEP--MRHRR-SGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-----V----PDMYNP 686 (824)
Q Consensus 624 d~~~~~--W-~~~~~--~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 686 (824)
+..+.. + ..+.. +|..- .--++... ++++|+|-| +..++||..+.+-.. + +.+ +
T Consensus 251 ~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~g~--p 321 (365)
T 3ba0_A 251 SNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQGI--G 321 (365)
T ss_dssp STTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHSTTC--C
T ss_pred cCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCCCC--C
Confidence 543211 1 12322 33311 11233333 589999988 578999986553211 0 112 2
Q ss_pred CcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 687 RSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 687 r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
..--++... ++++|++=|. ..|+||..+.+-..
T Consensus 322 ~~iDaA~~~~~g~~YfFkg~-------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 322 PKIDAVFYSKNKYYYFFQGS-------NQFEYDFLLQRITK 355 (365)
T ss_dssp SSCSEEEEETTTEEEEEETT-------EEEEEETTTTEEEE
T ss_pred CccceeeEecCCcEEEEeCC-------EEEEEECCccEEec
Confidence 222344445 8999999663 68999988765443
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=85.61 E-value=0.48 Score=47.98 Aligned_cols=84 Identities=11% Similarity=0.212 Sum_probs=56.1
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceec---------CHhhHHHHHHHHhhcChHhHH
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHI---------TEDNVASLLLATDFFCMSKAQ 293 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l---------~~~~v~~ll~~a~~~~i~~l~ 293 (824)
+..+.+|+.++.+.+.||.........-.. .+.+.+ +.+...
T Consensus 44 ~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~--------------~~~i~l~~~~~~~~v~~~~f~--------------- 94 (279)
T 3i3n_A 44 GREFRAHRSVLAAATEYFTPLLSGQFSESR--------------SGRVEMRKWSSEPGPEPDTVE--------------- 94 (279)
T ss_dssp -CEEEECHHHHHHHCTTSGGGCCC----------------------EEECCCCSSTTCSCHHHHH---------------
T ss_pred CeEEehHHHHHHHcCHHHHHHhcCCCcccc--------------CCeEEeccccccCCCCHHHHH---------------
Confidence 567889999999999999775443211100 122333 233322
Q ss_pred HHHHHHHhh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17309 294 DLCCDFIKR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNF 336 (824)
Q Consensus 294 ~~c~~~l~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f 336 (824)
...+|+.. .++.+|+..++.+|+.++++.|.+.|.+|+..++
T Consensus 95 -~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l 139 (279)
T 3i3n_A 95 -AVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL 139 (279)
T ss_dssp -HHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC
Confidence 33345543 4678999999999999999999999999998864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.57 E-value=36 Score=35.13 Aligned_cols=195 Identities=8% Similarity=-0.006 Sum_probs=110.7
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC--CCcccCceEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP--MNVERSDASAT 599 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~~~~~ 599 (824)
..+.++++.......+.+. ...-.+++.. ++.||+.-- ....++++++.....+.+.. +..+ .+++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~gla 122 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLA 122 (349)
T ss_dssp SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSCC---CEEE
T ss_pred cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCCc---cEEE
Confidence 4588888888777655332 1223444443 579998743 23679999998876554422 2222 2334
Q ss_pred E--ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC
Q psy17309 600 T--LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 600 ~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
+ .++.||+.-.. .+.+++++++...-+.+. .+..| .+.++. ++.||+..-.. ...|+++++.
T Consensus 123 vd~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~----~~~I~r~~~d 190 (349)
T 3v64_C 123 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 190 (349)
T ss_dssp EETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EecCCCeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC----CCEEEEEeCC
Confidence 3 37899987542 357889998765433332 22222 233333 68899886421 3679999987
Q ss_pred CCCEEECCCCCCCCcceEEEE--ECCEEEEEccCCCCceeeEEEEEECCCCcEEecc--CCCCCccceeEEEEcCcccee
Q psy17309 674 TKTWSQVPDMYNPRSNFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT--DMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 674 ~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~~~~~ 749 (824)
...-+.+..-. -..-.+++. .+++||+.-.. ...|+++|++...=..+. .++. -.+.++.++.+|+-
T Consensus 191 G~~~~~~~~~~-~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~~~~---P~giav~~~~ly~t 261 (349)
T 3v64_C 191 GSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGLPH---PFAITVFEDSLYWT 261 (349)
T ss_dssp SCSCEESCCSS-CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSS---EEEEEEETTEEEEE
T ss_pred CCCcEEEEECC-CCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCCCCC---ceEEEEECCEEEEe
Confidence 65544442211 111123343 27899998532 237899998764333321 2222 24555567777765
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=85.53 E-value=0.28 Score=40.70 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=46.8
Q ss_pred eeecceEEEE-cccccccccceeEEeeecccchhhhheeecccc--------------eecCHhhHHHHHHHHhhcCh
Q psy17309 227 AVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERK--------------LHITEDNVASLLLATDFFCM 289 (824)
Q Consensus 227 ~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~--------------l~l~~~~v~~ll~~a~~~~i 289 (824)
+..+..+..| .+.+ +...+.|.+++++..+++.+++|+|.-. -.+..+++.+|+.||++|+|
T Consensus 23 A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 23 AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 4455555555 2223 5555789999999999999999997643 25778899999999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.51 E-value=21 Score=37.85 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=80.6
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
++.+++.|+.+ ..+..||+.+.+-...-..+.......++.+ ++.+++.|+.+ ..+..||..+.+...
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCccEEE
Confidence 46777777753 5789999988664322111111122222333 67777778765 468899998866433
Q ss_pred cCCCCCCCcceEEE-EE-----CCEEEEEecCCCCCccceEEEEeCCCCCEEEC-C---C-C------C-----------
Q psy17309 633 IEPMRHRRSGVSCI-AY-----HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-P---D-M------Y----------- 684 (824)
Q Consensus 633 ~~~~p~~r~~~~~~-~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~---~-~------p----------- 684 (824)
.-.++. ......+ .. ++.+++.|+.+ ..+.+||..+.+-... . . . |
T Consensus 251 ~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 251 SWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEBCTT-CEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEecCC-CCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 211121 1111122 11 34566666543 4688888876542211 0 0 0 0
Q ss_pred ---CCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 685 ---NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 685 ---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
....-.+++..++++++.||.++ .+.+||..+.+
T Consensus 325 ~~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 325 GIRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp CCCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred ccccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 00111233444889999998766 68899988764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=32 Score=34.77 Aligned_cols=183 Identities=8% Similarity=-0.043 Sum_probs=93.2
Q ss_pred eEEEEECCCCcEEEcccCCCCC-CCceeEEEEE--CCEEEEEeecCC------------CcccceEEEEECCCCceEEec
Q psy17309 476 FVETYDTRADRWVKIDQVDPMG-PRAYHGTAVI--GYNIYVIGGFDG------------NEYYNSCRCFNAVTKVWKEIA 540 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~-~r~~~~~~~~--~~~lyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~ 540 (824)
.+..+|+.+.+...+....... ......+++. ++.||+.-.... ......+++||+.+++...+.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 3778888766544432111100 1122334443 467888642210 012356999999887765432
Q ss_pred -cCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCC---CcEEeecCCCcccCceEEEEE-CCEEEEEcccCC
Q psy17309 541 -PMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTE---NQWSLIAPMNVERSDASATTL-QGKIYITGGFNG 613 (824)
Q Consensus 541 -~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t---~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~ 613 (824)
.+..+ ..++.. ++ .||+.-.. .+.+++|++.+ ...+....++. ...+++- +|.|||......
T Consensus 182 ~~~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 182 KELHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEECSS---EEEEEECTTSCEEEEEEEET
T ss_pred cCCccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEeCCC---CCCeEECCCCCEEEEecCcc
Confidence 12211 233333 33 58887431 26789999875 34444433332 1223222 578998754310
Q ss_pred C-----CcCCceEEEeCCCCeEEEcCCCCC---CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q psy17309 614 H-----NCLNSCEVYDPECNQWTLIEPMRH---RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 614 ~-----~~~~~v~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
. .....+.+||+....-..+.. |. .....+++..+++|||.+.. .+.+.+|++..+
T Consensus 251 ~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~~~-----~~~i~~~~~~~~ 314 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGEHFEQIQEHDGLLYIGTLF-----HGSVGILVYDKK 314 (322)
T ss_dssp TSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTSCCCEEEEETTEEEEECSS-----CSEEEEEEC---
T ss_pred cccccCCCccEEEEECCCCCEEEEEEC-CCCCccccceEEEEeCCEEEEeecC-----CCceEEEecccc
Confidence 0 012468899997554444432 21 11222344568999987543 257888887644
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=85.41 E-value=1.2 Score=43.38 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=58.3
Q ss_pred EECCEEEEEecccCCCCCCeEEEEe--CCC--CcEE----ee----cCCCcc--cCceEEEEE---CCEEEEEcccCCCC
Q psy17309 553 VHQDVIYAMGGYNGQRRQNSVEKYN--YTE--NQWS----LI----APMNVE--RSDASATTL---QGKIYITGGFNGHN 615 (824)
Q Consensus 553 ~~~~~iyv~GG~~~~~~~~~~~~yd--~~t--~~W~----~~----~~~p~~--r~~~~~~~~---~~~lyv~GG~~~~~ 615 (824)
..++++|+|-| +.+|+|+ +.+ ..-. .+ +.||.. -...-+|.. ++++|+|-|
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG----- 137 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG----- 137 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-----
Confidence 35899999988 6789998 321 1110 11 123311 112223332 689999987
Q ss_pred cCCceEEEeCCCCeEEE-----cC-CCCCC------CcceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCC
Q psy17309 616 CLNSCEVYDPECNQWTL-----IE-PMRHR------RSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 616 ~~~~v~~yd~~~~~W~~-----~~-~~p~~------r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
+..++||..+++-.. +. .+|.. ..--++.. .++++|++-| +.-++||..+.
T Consensus 138 --~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 --DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp --TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred --CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 568899987654211 11 12211 11223333 3589999988 57889998765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.98 E-value=38 Score=34.92 Aligned_cols=212 Identities=12% Similarity=0.006 Sum_probs=120.9
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
.+..+++.......+. . ....-.+++.. ++.||+.-- ....++++++.......+....... -.++++
T Consensus 54 ~I~~i~~~g~~~~~~~-~---~~~~~~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~-p~glav 123 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLL-N---NLENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLES-PGGLAV 123 (349)
T ss_dssp CEEEECTTSCCEEEEE-C---SCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSC-CCEEEE
T ss_pred ceEEEeCCCCeeEEee-c---CCCceEEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCC-ccEEEE
Confidence 4677777776665531 1 12223455544 688998753 2357899999887655543221111 123444
Q ss_pred --ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec--CCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 554 --HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA--PMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 554 --~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
.++.||+.-.. .+.++++++....-+.+. .+..| .++++- ++.||+..-.. ...+++++++.
T Consensus 124 d~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~----~~~I~r~~~dG 191 (349)
T 3v64_C 124 DWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMDG 191 (349)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTS
T ss_pred ecCCCeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC----CCEEEEEeCCC
Confidence 37899998542 367899998766533332 23333 233443 68999874321 36799999876
Q ss_pred CeEEEcCCCCCCCcc-eEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEcc
Q psy17309 628 NQWTLIEPMRHRRSG-VSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGG 704 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 704 (824)
..-+.+..- .... .+.+. .+++||+.-.. ...|+++|+....-+.+.... ...-.++++.++.||+..-
T Consensus 192 ~~~~~~~~~--~~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 192 SGRRIIADT--HLFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp CSCEESCCS--SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEET
T ss_pred CCcEEEEEC--CCCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecC
Confidence 544443221 1122 23333 26899998643 368999998754323221111 1123566668999999854
Q ss_pred CCCCceeeEEEEEECCCC
Q psy17309 705 FNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~ 722 (824)
.+ ..|..+|..+.
T Consensus 264 ~~-----~~V~~~~~~~G 276 (349)
T 3v64_C 264 HT-----KSINSANKFTG 276 (349)
T ss_dssp TT-----TEEEEEETTTC
T ss_pred CC-----CeEEEEEccCC
Confidence 32 36888886554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=84.80 E-value=39 Score=36.01 Aligned_cols=113 Identities=9% Similarity=-0.078 Sum_probs=61.6
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEE-cccCCCCCCCceeEEEEE--CCEEEEEeecC----CCcccceEEEEECC
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVK-IDQVDPMGPRAYHGTAVI--GYNIYVIGGFD----GNEYYNSCRCFNAV 532 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~----~~~~~~~~~~yd~~ 532 (824)
..+|+.-....... +.+..+|+.+.+-.. ++.. ... .+++. +..+||.--.. .+...+.+..+|+.
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 45777654322112 789999999987643 2222 222 34443 66788874210 00123679999999
Q ss_pred CCceEEeccCC-CCc-----ceEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCcE
Q psy17309 533 TKVWKEIAPMN-FKR-----CYVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQW 583 (824)
Q Consensus 533 ~~~W~~~~~~~-~~r-----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 583 (824)
+.+-..--+++ .+| .-+.+++ -+..+|+..- ...+.+.++|+.+++-
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~----~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF----SPAPAVGVVDLEGKTF 212 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC----SSSCEEEEEETTTTEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec----CCCCeEEEEECCCCeE
Confidence 98754221122 111 1122233 2457888642 1246799999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=84.59 E-value=32 Score=35.07 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+++.|+.+ ..+..||..+++... +..- ...-.+++.. ++..++.||.+ ..+..||.....-..
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFS 154 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCEEEEEECC--CSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCEEEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCC--CCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCceee
Confidence 45666677654 468899998876432 2111 1111222322 56666777754 457778876443222
Q ss_pred ecCCCcccCceEEEEE--C----------CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCE
Q psy17309 586 IAPMNVERSDASATTL--Q----------GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HEC 651 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~--~----------~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 651 (824)
............++.. . +.+++.|+.+ ..+..||.....-..+.. .......+.+ +++
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGK 226 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSS
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcC---ccccceEEEECCCCC
Confidence 2221111111222222 1 1456667655 357778843322111111 1112222333 677
Q ss_pred EEEEecCCCCCccceEEEEeCC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
.++.|+.+ ..+.+||..
T Consensus 227 ~l~sgs~d-----g~v~iwd~~ 243 (343)
T 2xzm_R 227 YIATGGKD-----KKLLIWDIL 243 (343)
T ss_dssp EEEEEETT-----CEEEEEESS
T ss_pred EEEEEcCC-----CeEEEEECC
Confidence 77888754 467888874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=83.88 E-value=21 Score=39.97 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=67.6
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc---c---CceEEEEECCEEEEEcccCCCCcCCceEE
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE---R---SDASATTLQGKIYITGGFNGHNCLNSCEV 622 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~---r---~~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 622 (824)
-++.++.||+.+.. ..++.+|..|.+ |+.-...+.. . ...+.++.+++||+... ...+..
T Consensus 64 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~A 131 (582)
T 1flg_A 64 AIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVA 131 (582)
T ss_dssp CEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEE
T ss_pred cEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEE
Confidence 35679999998653 348999998765 8875443321 1 11334567899988532 246899
Q ss_pred EeCCCCe--EEEcCCCCCCC--cceEEEEECC------EEEEEecCC-CCCccceEEEEeCCCCC--EEE
Q psy17309 623 YDPECNQ--WTLIEPMRHRR--SGVSCIAYHE------CIYVIGGFN-GMSRMCNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 623 yd~~~~~--W~~~~~~p~~r--~~~~~~~~~~------~iyv~GG~~-~~~~~~~v~~yd~~~~~--W~~ 679 (824)
+|.+|++ |+.-..-+... ...+-++.++ .||+ |... .......++.||+.+.+ |+.
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 9998875 87643211111 1112234455 5555 3311 11124578999998765 864
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=83.55 E-value=21 Score=41.07 Aligned_cols=213 Identities=9% Similarity=-0.005 Sum_probs=113.9
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCC----CceEEec--cCCCCcc
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVT----KVWKEIA--PMNFKRC 547 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~--~~~~~r~ 547 (824)
.+..++..+.....+. +.....+++++. ++.||+.--. ...++++++.+ ..-..+. .+..|
T Consensus 387 ~I~~id~~~~~~~~~~----~~~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i~~~~~~P-- 455 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP-- 455 (699)
T ss_dssp C-CEECTTSCCEECCS----CCCTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBCCSCC--C--
T ss_pred ceEEEeCCCCcceeee----ccCcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEEEeCCCCCc--
Confidence 4666777766655431 112233445554 6788886421 24688888875 1111111 11111
Q ss_pred eEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC--CCcccCceEEEE--ECCEEEEEcccCCCCcCCceE
Q psy17309 548 YVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP--MNVERSDASATT--LQGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 548 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~v~ 621 (824)
.++++ .++.||+.-. ..+.++++++....-+.+.. +..|+ ++++ .++.||+..- .....|+
T Consensus 456 -~glavD~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~----~~~~~I~ 522 (699)
T 1n7d_A 456 -DGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDW----GTPAKIK 522 (699)
T ss_dssp -CCEECCCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCC----SSSCCEE
T ss_pred -ceEEEEeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEccc----CCCCeEE
Confidence 22333 4678998632 23568999988776554432 22332 2333 3678887642 1125688
Q ss_pred EEeCCCCeEEEcC--CCCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEEC
Q psy17309 622 VYDPECNQWTLIE--PMRHRRSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVID 696 (824)
Q Consensus 622 ~yd~~~~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~ 696 (824)
++++....-+.+. .+..|. ++++ .+++||+.-.. ...|+++|+....-+.+... .....-.++++.+
T Consensus 523 ~~~~dG~~~~~l~~~~l~~Pn---Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 523 KGGLNGVDIYSLVTENIQWPN---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp BCCSSSCCCCEESCSSCSSCC---CEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET
T ss_pred EEeCCCCCeeEEEeCCCCCcc---EEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCCceEeEEEC
Confidence 8877654333332 222221 2333 25889998643 36799999875443433322 1112334566778
Q ss_pred CEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 697 DMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 697 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
+.||+.-... ..|.++|+.+.+-.
T Consensus 595 ~~lywtd~~~-----~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 595 DKVFWTDIIN-----EAIFSANRLTGSDV 618 (699)
T ss_dssp TEEEEECSTT-----TCEEEEETTTEEEE
T ss_pred CEEEEEeCCC-----CeEEEEEccCCCce
Confidence 8999996322 36889998765443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=83.33 E-value=12 Score=41.81 Aligned_cols=189 Identities=10% Similarity=0.024 Sum_probs=96.6
Q ss_pred CEEEEEeecCCCcccceEEEEEC--CCCceEEeccCCCCcceEEEEEEC-CEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNA--VTKVWKEIAPMNFKRCYVSTAVHQ-DVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
+++...+..++......+|..+. .... ..+...+..+ ......+ +.++++.+.. +.+..||+.+.+-+.
T Consensus 75 d~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~-----~~~~l~d~~~g~~~~ 146 (582)
T 3o4h_A 75 GRVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATE-----DRVALYALDGGGLRE 146 (582)
T ss_dssp SEEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECS-----SCEEEEEEETTEEEE
T ss_pred CeEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCC-----CCceEEEccCCcEEE
Confidence 35555444322223346777887 4332 2443333222 2233444 4555555432 234478988887776
Q ss_pred ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecCCCCCcc
Q psy17309 586 IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIA-YHECIYVIGGFNGMSRM 664 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 664 (824)
+...+. ...+..-+|+..++++.+... ...++.+|+.+++++.+..-+. .....+. -+|+.++.+..++ .
T Consensus 147 l~~~~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~---~ 217 (582)
T 3o4h_A 147 LARLPG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSGEG--SFSSASISPGMKVTAGLETAR---E 217 (582)
T ss_dssp EEEESS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECCSSC--EEEEEEECTTSCEEEEEECSS---C
T ss_pred eecCCC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeecCCC--ccccceECCCCCEEEEccCCC---e
Confidence 654333 222233466666655543221 2459999999998887743221 1112222 2566555443322 2
Q ss_pred ceEEEEeCCCCCEEECCCCCCCCcceE-----E--EEECCEEEEEccCCCCceeeEEEEEEC
Q psy17309 665 CNGEKYNPVTKTWSQVPDMYNPRSNFA-----I--EVIDDMIFAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r~~~~-----~--~~~~~~i~v~GG~~~~~~~~~v~~yd~ 719 (824)
..++.+|+.+.+...+......-.... . ..-++++++.+..++ .+.+|+.
T Consensus 218 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-----~~~l~~~ 274 (582)
T 3o4h_A 218 ARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG-----RSAVFID 274 (582)
T ss_dssp EEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT-----EEEEEET
T ss_pred eEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC-----cEEEEEE
Confidence 479999999988773332211100011 0 223667777766544 4566666
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.20 E-value=0.98 Score=39.86 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=55.1
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
+..+.+|+.++.+.+.+|+......- ...+.+..-+ +...+...+|+-.
T Consensus 34 ~~~f~aHk~vLaa~S~yF~~mf~~~~------------------~~~i~l~~~~-------------~~~f~~lL~fiYt 82 (135)
T 2yy9_A 34 GLVFKAHWSVLACCSHFFQRIYGDGT------------------GGSVVLPAGF-------------AEIFGLLLDFFYT 82 (135)
T ss_dssp TEEEEECHHHHHHHCHHHHHTCC----------------------CCEEECGGG-------------HHHHHHHHHHHHH
T ss_pred CEEEehHHHHHHHhCHHHHHHHcCCC------------------CCeEEeCCCC-------------HHHHHHHHHHHhC
Confidence 45677888888888888866443321 3445554321 1223344455543
Q ss_pred ---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy17309 303 ---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVD 338 (824)
Q Consensus 303 ---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~ 338 (824)
.++.+|+..++.+|+.++++.|.+.|.+|+.+++..
T Consensus 83 g~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp SCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 477899999999999999999999999999988764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=83.00 E-value=51 Score=34.84 Aligned_cols=192 Identities=12% Similarity=0.112 Sum_probs=103.4
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc-
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV- 535 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~- 535 (824)
.+.||+... ....+..+|+.+++-..+... .. ..+ +++. ++.||+...... ..++.+|+.++.
T Consensus 141 ~g~lyv~d~-----~~~~I~~id~~~g~~~~~~~~-~~---~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 141 NNTVLAYQR-----DDPRVRLISVDDNKVTTVHPG-FK---GGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKASGWA 206 (409)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEEET-CC---BCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGGTTC
T ss_pred CCCEEEEec-----CCCcEEEEECCCCEEEEeecc-CC---CCc-eeEecCCCcEEEEecCCC----ceEEEEEcCCCce
Confidence 455666653 235789999988776654222 11 112 3333 456776653211 278999987654
Q ss_pred eEEeccCC--CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec---CCCcccCc-e-EEEEE--CCE
Q psy17309 536 WKEIAPMN--FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA---PMNVERSD-A-SATTL--QGK 604 (824)
Q Consensus 536 W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~-~-~~~~~--~~~ 604 (824)
...+...+ ....-+++++. ++.||+..+ ...+++||+.+.....+. ........ . .++.. ++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 23331111 11112233333 689999422 257999999988765542 11122222 1 45544 589
Q ss_pred EEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-C-C--------C-CcceEEEEE--CCEEEEEec-CCCCCccceEEEE
Q psy17309 605 IYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-R-H--------R-RSGVSCIAY--HECIYVIGG-FNGMSRMCNGEKY 670 (824)
Q Consensus 605 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p-~--------~-r~~~~~~~~--~~~iyv~GG-~~~~~~~~~v~~y 670 (824)
||+.... .+.+.+||+....-...... . . . ........+ ++.||+... . ...|.++
T Consensus 281 lyv~d~~-----~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----~~~I~~~ 350 (409)
T 3hrp_A 281 FYMSDQN-----LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----GYCLRKL 350 (409)
T ss_dssp EEEEETT-----TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----TCEEEEE
T ss_pred EEEEeCC-----CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----CCEEEEE
Confidence 9997532 35789998876532222221 0 0 0 112233333 578999864 3 3578899
Q ss_pred eCCCCCEEEC
Q psy17309 671 NPVTKTWSQV 680 (824)
Q Consensus 671 d~~~~~W~~~ 680 (824)
|+.+..-+.+
T Consensus 351 ~~~~G~v~~~ 360 (409)
T 3hrp_A 351 DILDGYVSTV 360 (409)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCEEEEE
Confidence 9666655544
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=82.77 E-value=45 Score=40.41 Aligned_cols=145 Identities=9% Similarity=-0.006 Sum_probs=77.2
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEE-EEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR-CFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~-~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..++.++..+.....+.. .+..+....... ++..+++++. ...++ .+|..+++-..+. ........++.
T Consensus 317 ~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~ 386 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYRTGKAEKFE--ENLGNVFAMGV 386 (1045)
T ss_dssp TEEEEECTTSSBEEECSC--CSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETTTCCEEECC--CCCCSEEEEEE
T ss_pred CEEEEEcCCCCceEEccC--CCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECCCCCceEec--CCccceeeeEE
Confidence 357777777666554311 111011111122 4554555442 25788 8999888766665 22122223333
Q ss_pred -ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCC-----CCcCCceEEEeCCC
Q psy17309 554 -HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG-----HNCLNSCEVYDPEC 627 (824)
Q Consensus 554 -~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~~~ 627 (824)
-+++.+++++.. ..++.+|+.+.+-..+..-........+..-+|+.+++++.+. ......+..+|..+
T Consensus 387 SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 387 DRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp CTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCCCCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 266666666532 4799999999887665422222112222223666666665432 12235789999998
Q ss_pred CeEEEcC
Q psy17309 628 NQWTLIE 634 (824)
Q Consensus 628 ~~W~~~~ 634 (824)
.+...+.
T Consensus 462 g~~~~l~ 468 (1045)
T 1k32_A 462 RKIFAAT 468 (1045)
T ss_dssp TEEEECS
T ss_pred CcEEEee
Confidence 8755554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=82.65 E-value=5.2 Score=40.71 Aligned_cols=172 Identities=15% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCC-ceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCC-CCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTK-VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT-ENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~ 585 (824)
++.||+... + +++||+..+ .|..... .. .....+..++.||+... ...+++||+. ...|+.
T Consensus 70 ~g~l~v~t~-------~-l~~~d~~g~~~~~~~~~--~~-~~~~~~~~~~~l~v~t~------~~~l~~~d~~g~~~~~~ 132 (330)
T 3hxj_A 70 DGTIYFGSD-------K-VYAINPDGTEKWRFDTK--KA-IVSDFTIFEDILYVTSM------DGHLYAINTDGTEKWRF 132 (330)
T ss_dssp TTEECCSSC-------E-EEEECCCGGGGGGSCC--------CCEEEETTEEEEECT------TSEEEEECTTSCEEEEE
T ss_pred CCcEEEecC-------c-EEEECCCCcEEEEEECC--CC-cccCceEECCEEEEEec------CCEEEEEcCCCCEEEEE
Confidence 567766321 3 899997432 2532111 11 11122334888887532 2468999987 345765
Q ss_pred ecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEE-ECCEEEEEecCCCCC
Q psy17309 586 IAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIA-YHECIYVIGGFNGMS 662 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 662 (824)
..+.+. ..+.+.. ++.||+.. . ...+.+||+... .|..-.+ ..... +.+. -++.||+..
T Consensus 133 ~~~~~~---~~~~~~~~~g~l~vgt-~-----~~~l~~~d~~g~~~~~~~~~--~~~~~-~~~~d~~g~l~v~t------ 194 (330)
T 3hxj_A 133 KTKKAI---YATPIVSEDGTIYVGS-N-----DNYLYAINPDGTEKWRFKTN--DAITS-AASIGKDGTIYFGS------ 194 (330)
T ss_dssp ECSSCC---CSCCEECTTSCEEEEC-T-----TSEEEEECTTSCEEEEEECS--SCCCS-CCEECTTCCEEEES------
T ss_pred cCCCce---eeeeEEcCCCEEEEEc-C-----CCEEEEECCCCCEeEEEecC--CCcee-eeEEcCCCEEEEEe------
Confidence 432221 1222333 67777742 2 146889998722 3655422 22222 2233 367777754
Q ss_pred ccceEEEEeCCC-CCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCc-EE
Q psy17309 663 RMCNGEKYNPVT-KTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDE-WY 725 (824)
Q Consensus 663 ~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~ 725 (824)
..+++||... ..|+...... . ..+.+.- ++.||+... + ..+.+||+.... |.
T Consensus 195 --~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~v~t~-~-----~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 195 --DKVYAINPDGTEKWNFYAGYW--T-VTRPAISEDGTIYVTSL-D-----GHLYAINPDGTEKWR 249 (330)
T ss_dssp --SSEEEECTTSCEEEEECCSSC--C-CSCCEECTTSCEEEEET-T-----TEEEEECTTSCEEEE
T ss_pred --CEEEEECCCCcEEEEEccCCc--c-eeceEECCCCeEEEEcC-C-----CeEEEECCCCCEeEE
Confidence 3578888442 3466543211 1 1222223 457777531 1 147777775543 44
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=82.64 E-value=32 Score=35.81 Aligned_cols=145 Identities=9% Similarity=0.035 Sum_probs=82.2
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCce--EEe----ccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVW--KEI----APMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~~~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
++...++.+|+|=| +.+|+++.....- ..+ +.+|. ....+... .++++|+|-| +.+|+
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iDAa~~~~~~g~~~fFkg-------~~yWr 249 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPS-GIEAAYEIEARNQVFLFKD-------DKYWL 249 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCCEEEEEGGGTEEEEEET-------TEEEE
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCC-CccEEEEecCCCEEEEEeC-------CEEEE
Confidence 34556899999987 5677776544221 111 12332 22222222 2789999988 67888
Q ss_pred EeCCCCc--E-EeecC--CCcccCceEEEE-E--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc---------CCCCC
Q psy17309 576 YNYTENQ--W-SLIAP--MNVERSDASATT-L--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI---------EPMRH 638 (824)
Q Consensus 576 yd~~t~~--W-~~~~~--~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~---------~~~p~ 638 (824)
|+..+.. + +.+.. +|..-...-+|. . ++++|+|-| +..++||..+.+-..- +.+|
T Consensus 250 ~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~g~p- 321 (365)
T 3ba0_A 250 ISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQGIG- 321 (365)
T ss_dssp CSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHSTTCC-
T ss_pred EcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCCCCC-
Confidence 8754321 1 12222 333211222333 3 589999977 5688999876543221 1122
Q ss_pred CCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 639 RRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 639 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
..--++... ++++|.|-| +..++||..+.+-.
T Consensus 322 -~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~ 354 (365)
T 3ba0_A 322 -PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRIT 354 (365)
T ss_dssp -SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEE
T ss_pred -CccceeeEecCCcEEEEeC-------CEEEEEECCccEEe
Confidence 222344444 899999988 57899998776543
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=82.27 E-value=21 Score=34.08 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=75.2
Q ss_pred ECCEEEEEeecCCCcccceEEEEECCCCce--EEec----cCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVW--KEIA----PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
.++.+|+|=| +.+|+++.....+ ..+. .+|. ...+ +...++++|+|-| +.+|+|+..+
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDA-A~~~~~~~yfFkG-------~~yw~~~~~~ 90 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS-TVDA-AFSWEDKLYLIQD-------TKVYVFLTKG 90 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCS-SCSE-EEEETTEEEEEET-------TEEEEEECSS
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCC-CccE-EEEECCcEEEecC-------CEEEEEeCCC
Confidence 3788999987 5677776543322 1222 2332 2222 3334899999988 6799998754
Q ss_pred C-cE-----Eeec---CCCcc--cCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCC---eEEEcCCCCCCCcce
Q psy17309 581 N-QW-----SLIA---PMNVE--RSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECN---QWTLIEPMRHRRSGV 643 (824)
Q Consensus 581 ~-~W-----~~~~---~~p~~--r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~ 643 (824)
+ +- +.+. .+|.. ....-+|.. ++++|+|-| +..++||..+. .|...+-+|. ...+
T Consensus 91 ~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g~p~-~vdA 162 (219)
T 1hxn_A 91 GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWPHE-KVDG 162 (219)
T ss_dssp SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCSCS-CCSE
T ss_pred CceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCCCCC-CcCE
Confidence 2 11 1111 23332 122334442 689999987 56788886542 3433322222 2222
Q ss_pred EEEE-----------ECCEEEEEecCCCCCccceEEEEeCC
Q psy17309 644 SCIA-----------YHECIYVIGGFNGMSRMCNGEKYNPV 673 (824)
Q Consensus 644 ~~~~-----------~~~~iyv~GG~~~~~~~~~v~~yd~~ 673 (824)
+... .++.+|.+-| +.-++||..
T Consensus 163 a~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~ 196 (219)
T 1hxn_A 163 ALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHV 196 (219)
T ss_dssp EEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSH
T ss_pred EEEccccccccceeccCCeEEEEEC-------CEEEEEeCC
Confidence 2221 3468999988 467788764
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=81.83 E-value=1.7 Score=43.20 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=53.7
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceec---CHhhHHHHHHHHhhcChHhHHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHI---TEDNVASLLLATDFFCMSKAQDLCCDF 299 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l---~~~~v~~ll~~a~~~~i~~l~~~c~~~ 299 (824)
+..+.+|+.++.+.+.||...........+- -...+.+ +.+... ...+|
T Consensus 40 ~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~------------~~~~i~l~~v~~~~f~----------------~ll~~ 91 (256)
T 3hve_A 40 GEEIPVQKNILAAASPYIRTKLNYNPPKDDG------------STYKIELEGISVMVMR----------------EILDY 91 (256)
T ss_dssp TEEEEECHHHHHTTCHHHHHTC-----------------------CEEECSSCCHHHHH----------------HHHHH
T ss_pred CEEEechHHHHHHcCHHHHHHhCCCCCcccC------------CCCeEEeCCCCHHHHH----------------HHHhh
Confidence 5567888888888888886644322110000 0112332 333333 33345
Q ss_pred Hhh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17309 300 IKR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNF 336 (824)
Q Consensus 300 l~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f 336 (824)
+.. .++.+|+..++.+|+.++++.|.+.|.+|+..++
T Consensus 92 ~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l 131 (256)
T 3hve_A 92 IFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI 131 (256)
T ss_dssp HHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred ccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC
Confidence 543 4788999999999999999999999999998764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=81.56 E-value=51 Score=34.02 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCC----CCCCeEEEEeCCCCc
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQ----RRQNSVEKYNYTENQ 582 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~----~~~~~~~~yd~~t~~ 582 (824)
..+|+.-........+.++.||+.+++-.. .++..... .++.. +..+|+..-.... ...+.+.+||+.+.+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEE--EecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 356665432111123578999998876532 23333322 33333 4578887532111 123568999998765
Q ss_pred EE-eecCCC----cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 583 WS-LIAPMN----VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 583 W~-~~~~~p----~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
-. .++-.+ ....-+.++.. +..||+.... ..+.+.++|..+++-
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SSEEEEEEETTTTEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CCCeEEEEECCCCcE
Confidence 32 222111 11122333333 4577776321 125788999888754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.33 E-value=52 Score=34.65 Aligned_cols=148 Identities=12% Similarity=0.180 Sum_probs=75.5
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecC----CCcccCceEEEEE--CC-EEEEEcccCCCCcCCceEEEeC
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAP----MNVERSDASATTL--QG-KIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~----~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
++.+++.| .+ ..+.+||..+. .+..+.. +.........+.+ ++ .+++.|+.+ ..+..||.
T Consensus 188 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~ 256 (447)
T 3dw8_B 188 DYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-----GTIRLCDM 256 (447)
T ss_dssp TSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-----SCEEEEET
T ss_pred CCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-----CeEEEEEC
Confidence 55666655 22 56888888732 2332211 1111222223333 34 678888765 36888998
Q ss_pred CCCeE-----EEcCCCCC--CC-------cceEEEEE--CCEEEEEecCCCCCccceEEEEeCCC-CCEEECCCCCCC--
Q psy17309 626 ECNQW-----TLIEPMRH--RR-------SGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVT-KTWSQVPDMYNP-- 686 (824)
Q Consensus 626 ~~~~W-----~~~~~~p~--~r-------~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~-- 686 (824)
.+.+- ..+..... .+ .....+.+ ++++++.|+. ..+.+||..+ .+ .+..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~v~iwd~~~~~~--~~~~~~~~~~ 328 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY------LSVKVWDLNMENR--PVETYQVHEY 328 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES------SEEEEEETTCCSS--CSCCEESCGG
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC------CeEEEEeCCCCcc--ccceeecccc
Confidence 87653 22221110 00 02223333 5677776653 5788899875 32 11111100
Q ss_pred -Cc-------------ceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 687 -RS-------------NFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 687 -r~-------------~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
+. ...++. -+++.++.|+.++ .+.+||..+.+-..
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-----~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN-----FFRMFDRNTKRDIT 378 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT-----EEEEEETTTCCEEE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCC-----EEEEEEcCCCccee
Confidence 00 011222 3667778888765 68899998876654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=59 Score=39.35 Aligned_cols=223 Identities=10% Similarity=-0.032 Sum_probs=112.6
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCC---------C
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---------K 545 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~---------~ 545 (824)
..++.+++....-..+.... ........-++..++++. ...++.+|..+.....+..-.. .
T Consensus 226 ~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~ 295 (1045)
T 1k32_A 226 GQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISI 295 (1045)
T ss_dssp CEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEEC
T ss_pred eEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeeeeccCcccccccccccc
Confidence 45666776555444432111 111112223555444442 2468888886555443332100 0
Q ss_pred cceEEEE-E-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceE-E
Q psy17309 546 RCYVSTA-V-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCE-V 622 (824)
Q Consensus 546 r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~-~ 622 (824)
..-.+++ . -+++..+++. ...++.++..+.....+...+..+....... +++.+++++. ...++ .
T Consensus 296 ~~v~~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~ 363 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGI 363 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEE
T ss_pred cccceeeecCCCCCEEEEEE------cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEE
Confidence 0112233 3 3555444444 2468888888776655433322122222223 5555555442 24678 8
Q ss_pred EeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEE
Q psy17309 623 YDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIF 700 (824)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~ 700 (824)
||..+..-..+. ... .....+.+ +++.+++++.+ ..++.+|+.+.+-..+...........+..-+++.+
T Consensus 364 ~d~~~~~~~~l~--~~~-~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 364 YDYRTGKAEKFE--ENL-GNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp EETTTCCEEECC--CCC-CSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred EECCCCCceEec--CCc-cceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence 899887766654 221 22222323 67766666542 479999999887665532111111112222367666
Q ss_pred EEccCCC-----CceeeEEEEEECCCCcEEec
Q psy17309 701 AIGGFNG-----VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 701 v~GG~~~-----~~~~~~v~~yd~~~~~W~~~ 727 (824)
++++.+. ......+++||..+.+...+
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 6655432 12345799999998875555
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.02 E-value=2.4 Score=36.08 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=53.3
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecC--HhhHHHHHHHHhhcChHhHHHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHIT--EDNVASLLLATDFFCMSKAQDLCCDFI 300 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~--~~~v~~ll~~a~~~~i~~l~~~c~~~l 300 (824)
+..+.+|+.++.+.+.+|....... -...+.|. .-+ +...+...+|+
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~------------------~~~~i~l~~~~~~-------------~~~f~~ll~~~ 79 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST------------------SENNVFLDQSQVK-------------ADGFQKLLEFI 79 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC------------------CCSCEECCTTTCC-------------HHHHHHHHHHH
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC------------------CCCeEEeecCCCC-------------HHHHHHHHHHH
Confidence 4567788888888888887644433 02233333 111 11223334455
Q ss_pred hh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17309 301 KR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYIL 333 (824)
Q Consensus 301 ~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~ 333 (824)
-. .++.+|+..++.+|+.++++.|.+.|.+|+.
T Consensus 80 Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 80 YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 43 4678999999999999999999999999974
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=80.75 E-value=2.2 Score=36.96 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=53.4
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceec-CHhhHHHHHHHHhhcChHhHHHHHHHHHh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHI-TEDNVASLLLATDFFCMSKAQDLCCDFIK 301 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l-~~~~v~~ll~~a~~~~i~~l~~~c~~~l~ 301 (824)
+..+.+|+.++.+.+.+|........ . + -...+.| ..-+. ...+...+||-
T Consensus 38 ~~~~~aHk~iLaa~S~~F~~~f~~~~----------~---e--~~~~i~l~~~~~~-------------~~f~~ll~~~Y 89 (127)
T 1r29_A 38 REQFRAHKTVLMACSGLFYSIFTDQL----------K---R--NLSVINLDPEINP-------------EGFNILLDFMY 89 (127)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTSTT----------T---T--TCSEEECCTTSCH-------------HHHHHHHHHHH
T ss_pred CEEEehHHHHHHHhCHHHHHHhcCCc----------c---C--CCCEEEeCCCCCH-------------HHHHHHHHHHc
Confidence 45677888888888888765332110 0 0 1233444 22111 12223334443
Q ss_pred h---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17309 302 R---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILR 334 (824)
Q Consensus 302 ~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~ 334 (824)
. .++.+|+..++.+|+.++++.|.+.|.+|+.+
T Consensus 90 tg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 90 TSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3 46789999999999999999999999999865
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=80.54 E-value=41 Score=32.09 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=75.1
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcE--Eee----cCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQW--SLI----APMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
.+|.+|+|-| +.+|+++.....+ ..+ +.+|.. -. ++...++++|+|-| +.+++|+..+
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG-------~~yw~~~~~~ 90 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD-------TKVYVFLTKG 90 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET-------TEEEEEECSS
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC-------CEEEEEeCCC
Confidence 4789999987 5677776544322 112 234432 22 33344899999977 5678888653
Q ss_pred C-eE-----EEcC---CCCCC--CcceEEEE-E--CCEEEEEecCCCCCccceEEEEeCCC---CCEEECCCCCCCCcce
Q psy17309 628 N-QW-----TLIE---PMRHR--RSGVSCIA-Y--HECIYVIGGFNGMSRMCNGEKYNPVT---KTWSQVPDMYNPRSNF 690 (824)
Q Consensus 628 ~-~W-----~~~~---~~p~~--r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~ 690 (824)
+ +- ..+. .+|.. ....-+|. . ++++|+|-| +..++||..+ ..|...+.+|.. ..
T Consensus 91 ~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g~p~~-vd- 161 (219)
T 1hxn_A 91 GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWPHEK-VD- 161 (219)
T ss_dssp SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCSCSC-CS-
T ss_pred CceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCCCCCC-cC-
Confidence 2 10 1111 23332 11223333 2 589999998 5789999754 234433333222 22
Q ss_pred EEEE------------ECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 691 AIEV------------IDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 691 ~~~~------------~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++.. .++.+|++-|. .-+.||..+
T Consensus 162 Aa~~~~~~~~~~~~~~~~~~~YFFkg~-------~y~r~~~~~ 197 (219)
T 1hxn_A 162 GALCMEKPLGPNSCSTSGPNLYLIHGP-------NLYCYRHVD 197 (219)
T ss_dssp EEEEESSCSSSCCSCSSSCEEEEEETT-------EEEEESSHH
T ss_pred EEEEccccccccceeccCCeEEEEECC-------EEEEEeCCc
Confidence 3333 34678888664 567776543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=80.47 E-value=61 Score=34.09 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=108.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC----cEE-eec-CCCcccCc
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN----QWS-LIA-PMNVERSD 595 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~-~~~-~~p~~r~~ 595 (824)
..+..+|+....+..+.+- .+.-.+++.. ++.||+.-- ....++++++... ..+ .+. .+. .-
T Consensus 92 ~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d~~~~~lywsD~-----~~~~I~~~~~~g~~~~~~~~~~~~~~~~---~p 161 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDL-----SQRMICSTQLDRAHGVSSYDTVISRDIQ---AP 161 (400)
T ss_dssp TEEEEECTTSCSCEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEEC------CCCEEEECSSCS---CE
T ss_pred ceeEEEccCCcceeEeccc--cCcceEEeeeeccCceEEEec-----CCCeEEEEEcccCCCCCcceEEEeCCCC---Cc
Confidence 5688888888777665332 2333455554 689999843 2357888888752 122 222 222 12
Q ss_pred eEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEE
Q psy17309 596 ASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 596 ~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 669 (824)
.++++ .++.||+.-.. ...++++|++...-+.+. .+..| .+.++. ++.||+.--.. ...|++
T Consensus 162 ~glavD~~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~~----~~~I~~ 229 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----PAKIKK 229 (400)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECSS----SCCEEE
T ss_pred ccEEEEecCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCCC----CCEEEE
Confidence 23344 37899998542 357889998876554442 22222 233332 68899875211 257899
Q ss_pred EeCCCCCEEEC-C-CCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCC-CCccceeEEEEcC
Q psy17309 670 YNPVTKTWSQV-P-DMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN-IYRSALSACVIMG 744 (824)
Q Consensus 670 yd~~~~~W~~~-~-~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~ 744 (824)
+++....=+.+ . .+. .-.++++- +++||+.-.. .+.|+++|.+...-..+...+ ......+.++..+
T Consensus 230 ~~~dG~~~~~~~~~~l~---~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~ 301 (400)
T 3p5b_L 230 GGLNGVDIYSLVTENIQ---WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 301 (400)
T ss_dssp EETTSCSCEEEECSSCS---CEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT
T ss_pred EeCCCCccEEEEECCCC---ceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC
Confidence 99875433322 1 121 11233333 6899998432 347999998765433332211 1122245666777
Q ss_pred ccceec
Q psy17309 745 LPNVYD 750 (824)
Q Consensus 745 ~~~~~~ 750 (824)
.+|+-.
T Consensus 302 ~lywtd 307 (400)
T 3p5b_L 302 KVFWTD 307 (400)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.33 E-value=94 Score=36.14 Aligned_cols=194 Identities=11% Similarity=0.044 Sum_probs=106.6
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC----cEE-eec-CCCcccCc
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN----QWS-LIA-PMNVERSD 595 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~-~~~-~~p~~r~~ 595 (824)
..+..++.....+..+... .+...++++. ++.||+.-.. ...++++++... ..+ .+. .+..+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P--- 473 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 473 (791)
T ss_dssp SSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred cceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCc---
Confidence 4567777777766655432 2233444544 6799998542 356888887652 222 222 22222
Q ss_pred eEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEE
Q psy17309 596 ASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 596 ~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 669 (824)
.++++ .+++||+.-.. ...|+++++....-+.+. .+..| .++++. ++.||+.--. ....|++
T Consensus 474 ~GLAvD~~~~~LY~tD~~-----~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g----~~~~I~~ 541 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKIKK 541 (791)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----SSCEEEE
T ss_pred ceeeeeecCCcEEEEecC-----CCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCC----CCCeEEE
Confidence 23333 36799998532 357899998876655443 22222 233332 5899998621 1257899
Q ss_pred EeCCCCCEEECCCCCCCCcce-EEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec-c---CCCCCccceeEEEE
Q psy17309 670 YNPVTKTWSQVPDMYNPRSNF-AIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA-T---DMNIYRSALSACVI 742 (824)
Q Consensus 670 yd~~~~~W~~~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~---~~p~~r~~~~~~~~ 742 (824)
+++....=+.+..- ..... ++++- +++||+.-.. .+.|+++|++...=..+ . .++. .++.++.
T Consensus 542 ~~~dG~~~~~lv~~--~l~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~~---P~glav~ 611 (791)
T 3m0c_C 542 GGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAH---PFSLAVF 611 (791)
T ss_dssp EETTSCCEEEEECS--SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSS---EEEEEEE
T ss_pred EecCCCceEEEEeC--CCCCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccCC---CCEEEEe
Confidence 99876554443211 11122 33332 6899999532 24789999876443333 2 2332 2456667
Q ss_pred cCcccee
Q psy17309 743 MGLPNVY 749 (824)
Q Consensus 743 ~~~~~~~ 749 (824)
.+.||+-
T Consensus 612 ~~~lYwt 618 (791)
T 3m0c_C 612 EDKVFWT 618 (791)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 7777775
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=80.21 E-value=50 Score=36.37 Aligned_cols=199 Identities=9% Similarity=0.069 Sum_probs=95.6
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+..||........+... ...-.+++.. ++..++.|+.+ ..+..||.....-..+..... .-.+++.
T Consensus 366 g~v~~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~--~v~~~~~ 434 (577)
T 2ymu_A 366 KTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSS--SVWGVAF 434 (577)
T ss_dssp SEEEEEETTCCEEEEEECC----SSCEEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEECCSS--CEEEEEE
T ss_pred CEEEEEcCCCCEEEEecCC----CCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCC--CeEEEEE
Confidence 3567777655444332211 1111222222 56666777644 357788854433333322111 1122222
Q ss_pred -ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 554 -HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 554 -~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
-++..++.|+.+ ..+..||.....-..+.....+ -.+++.. ++++++.|+.+ ..+..||.....-.
T Consensus 435 s~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~--v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~ 502 (577)
T 2ymu_A 435 SPDDQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQ 502 (577)
T ss_dssp CTTSSEEEEEETT-----SEEEEEETTSCEEEEEECCSSC--EEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEE
T ss_pred CCCCCEEEEEcCC-----CEEEEEECCCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEE
Confidence 256777777643 4577888765544333222111 1122222 67777777754 35777886543332
Q ss_pred EcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 632 LIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
.+.. ......++.+ ++++++.|+.+ ..+..||.....-..+.. .......+.+ +++.++.||.++
T Consensus 503 ~~~~---h~~~v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 503 TLTG---HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp EEEC---CSSCEEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEeC---CCCCEEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 2221 1112222333 67777777754 467888865433332211 1111112222 677777888765
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=80.21 E-value=7.1 Score=37.73 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=56.2
Q ss_pred ECCEEEEEcccCCCCcCCceEEEe--CCC--CeE----EEc----CCCC----CCCcceEEEEE--CCEEEEEecCCCCC
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYD--PEC--NQW----TLI----EPMR----HRRSGVSCIAY--HECIYVIGGFNGMS 662 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd--~~~--~~W----~~~----~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~ 662 (824)
.++++|+|-| +.+++|+ +.+ ..- ..+ +.+| ..... ++... ++++|+|-|
T Consensus 71 ~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~ID-AA~~~~~~~k~yfFkG----- 137 (227)
T 3lp9_A 71 ENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGID-AAYRSTRGKEVYLFKG----- 137 (227)
T ss_dssp STTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCS-EEEECSSTTEEEEEET-----
T ss_pred CCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCccc-EEEEECCCCEEEEEEC-----
Confidence 5899999987 4577887 321 111 111 1233 11222 23332 689999998
Q ss_pred ccceEEEEeCCCCCEE-----ECC-CCCC------CCcceEEEE--ECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 663 RMCNGEKYNPVTKTWS-----QVP-DMYN------PRSNFAIEV--IDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 663 ~~~~v~~yd~~~~~W~-----~~~-~~p~------~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
+..++||..+++-. .+. .+|. +..--++.. .++++|++=|. ..|.||..++
T Consensus 138 --~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~-------~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 --DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD-------HYARVKVTPX 202 (227)
T ss_dssp --TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT-------EEEEEECCSS
T ss_pred --CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC-------EEEEEECCcc
Confidence 57899998754311 110 1221 111223333 36899999763 6899998775
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.18 E-value=1.9 Score=36.99 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=54.3
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
+..+.+|+.++.+.+++|+...... ....+.+..-. +...+...+|+-.
T Consensus 33 ~~~f~aHk~vLaa~S~yF~~~f~~~------------------~~~~i~l~~~~-------------~~~f~~ll~~iYt 81 (119)
T 3b84_A 33 GLVFKAHWSVLACCSHFFQSLYGDG------------------SGGSVVLPAGF-------------AEIFGLLLDFFYT 81 (119)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTT------------------TCCCEEECGGG-------------HHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHhhcCHHHHHHHCCC------------------CCCeEEeCCCC-------------HHHHHHHHHHHcC
Confidence 4567788888888788876533321 13455554322 1223334455543
Q ss_pred ---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17309 303 ---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRN 335 (824)
Q Consensus 303 ---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~ 335 (824)
.++.+|+..++.+|+.++++.|.+.|.+|+.++
T Consensus 82 g~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 82 GHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp SCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred CCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 467899999999999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 824 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-38 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 3e-18 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 4e-17 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 3e-15 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 8e-15 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-14 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 4e-12 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-22 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-16 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-15 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-14 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 3e-13 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-08 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 3e-08 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-05 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 3e-04 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 7e-04 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (358), Expect = 2e-38
Identities = 102/291 (35%), Positives = 150/291 (51%), Gaps = 8/291 (2%)
Query: 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVI 514
P+V +++ GG+ S ++E Y+ W+++ D PR+ V+G +Y +
Sbjct: 1 PKVG-RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAV 56
Query: 515 GGFD----GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 570
GG + GN ++ C+N +T W APM+ R + V IYA+GG +G
Sbjct: 57 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 116
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630
NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y PE N+W
Sbjct: 117 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 176
Query: 631 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF 690
+I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M + RS
Sbjct: 177 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 236
Query: 691 AIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (205), Expect = 3e-18
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 5/204 (2%)
Query: 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN--- 612
+IY GGY Q + +E YN + W +A + V RS + + G +Y GG N
Sbjct: 5 RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 613 -GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
G+ ++ + Y+P NQW+ PM R+ + IY +GG +G + E+Y
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
P W V M R + V++ +++A+GGF+G + ECY + +EW T MN
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 183
Query: 732 IYRSALSACVIMGLPNVYDYIHQH 755
RS CV+
Sbjct: 184 TIRSGAGVCVLHNCIYAAGGYDGQ 207
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.3 bits (196), Expect = 4e-17
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 41 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVI 100
P+V +++ GG+ S ++E Y+ W+++ D PR+ V+G +Y +
Sbjct: 1 PKVG-RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAV 56
Query: 101 GGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 156
GG DGN ++ C+N +T W APM+ R + V IYA+GG +G
Sbjct: 57 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 116
Query: 157 NSVEKYNYTENQWSLIA-----PMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVW 211
NSVE+Y ++W L+A + + + +Y +GGFDG NS C+ W
Sbjct: 117 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 176
Query: 212 KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH 271
+ I MN R V + IYA GGY+GQ + NSVE+Y+ R
Sbjct: 177 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 236
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 3e-15
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 7/217 (3%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM--GPRAYHGTAVIGYNIYVIGGFDG 105
L+A+GG + + + + PR G VI +IY +GG G
Sbjct: 53 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 112
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT 165
++NS + W +APM +R V AV ++YA+GG++G R NS E Y
Sbjct: 113 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 172
Query: 166 ENQWSLIAPMNCMIQNVTY-----NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK 220
N+W +I MN + IY GG+DG + NS ++ T+ W +APM +
Sbjct: 173 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 232
Query: 221 RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 233 RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.4 bits (178), Expect = 8e-15
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 49 FAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 108
+A+GG+ G + + E Y + W R+ G V+ IY GG+DG +
Sbjct: 152 YAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209
Query: 109 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 168
NS ++ T+ W +APM +R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 210 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269
Query: 169 WSLIAPMN 176
WS + M
Sbjct: 270 WSEVTRMT 277
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (172), Expect = 5e-14
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 87 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 146
G AV+ +Y +GGFDG NS C+ W+ I MN R V + IYA
Sbjct: 141 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA 200
Query: 147 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTY-----NIYVIGGFDGNEYYNSC 201
GGY+GQ + NSVE+Y+ W+ +APM + IYV+GG+DG+ + +S
Sbjct: 201 AGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSV 260
Query: 202 RCFNAVTKVWKEIAPMNFKRCYVSTAV 228
C++ T W E+ M R V AV
Sbjct: 261 ECYDPDTDTWSEVTRMTSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (158), Expect = 4e-12
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 45 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
H ++A GG+ G + VE YD + W R+ G V IYV+GG+D
Sbjct: 195 HNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITVHQGRIYVLGGYD 252
Query: 105 GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 139
G+ + +S C++ T W E+ M R V AV
Sbjct: 253 GHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 96.0 bits (237), Expect = 8e-22
Identities = 49/351 (13%), Positives = 91/351 (25%), Gaps = 54/351 (15%)
Query: 449 TPEIARPRVPHEI--------LFAIGGWS------GGSPTDFVETYDTRADRWVKIDQVD 494
P I P VP + + ++D
Sbjct: 12 GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 495 PMGPRAYHGTAVIGY-NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553
G ++ G I V GG D + +++ + W M R Y S+A
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 554 HQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG----KIYI 607
V G ++G + + E Y+ + W+ + V + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 608 TGGFNGH-----NCLNSCEVYDPECNQWTLIEPMRHRRS-----------------GVSC 645
G G Y + R G
Sbjct: 188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL 247
Query: 646 IAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN-FAIEVIDDMIFAIGG 704
Y + + + T +Y R+ ++ + D F GG
Sbjct: 248 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307
Query: 705 ------FNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVY 749
F T ++ E Y + D +Y+ +I R S +++ V+
Sbjct: 308 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF 358
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 77.9 bits (190), Expect = 9e-16
Identities = 27/236 (11%), Positives = 57/236 (24%), Gaps = 34/236 (14%)
Query: 531 AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQN------SVEKYNYTENQWS 584
W + + + Y ++ + S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 585 LIAPMNVERSD---ASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLI--EPMRHR 639
+ + G+I +TGG + +YD + W +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 640 RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN---------- 689
+ ++ + G ++G NGE Y+P +KTW+ +P+
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181
Query: 690 ----FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
+ +F G Y + + A R +
Sbjct: 182 DNHAWLFGWKKGSVFQAGPSTA-----MNWYYTSGSGDVKSAGKRQSNRGVAPDAM 232
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 74.9 bits (182), Expect = 8e-15
Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 9/188 (4%)
Query: 581 NQWSLIAPMNVERSDASATTLQGKIYITGGF------NGHNCLNSCEVYDPECNQWTLIE 634
+W + + + A+ G++ + + + +DP +
Sbjct: 9 GRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT 68
Query: 635 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AI 692
+ + I G Y+ + +W PDM R A
Sbjct: 69 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT-SLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 693 EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+ G ++G + E Y + W + + + + + + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 753 HQHRDSLM 760
+ +
Sbjct: 188 FGWKKGSV 195
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 36/242 (14%)
Query: 467 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYY--- 523
WSGG E Y + W + + + +
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 524 ----NSCRCFNAVTKVWKEIAPMNFKRCYVS-----------------TAVHQDVIYAMG 562
+ + + K R Y
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 563 GYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGG------FNGHN 615
++ + + N + R+ ++ G +ITGG F
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318
Query: 616 CLNSCEVYDPECNQWTLIEPMRHRRSG--VSCIAYHECIYVIGGF---NGMSRMCNGEKY 670
+ + E+Y PE + + P R +S + ++ GG + + + + +
Sbjct: 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Query: 671 NP 672
P
Sbjct: 379 TP 380
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 70.2 bits (170), Expect = 3e-13
Identities = 20/241 (8%), Positives = 51/241 (21%), Gaps = 41/241 (17%)
Query: 53 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYY--- 109
WSGG E Y + W + + + +
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 110 ----NSCRCFNAVTKVWKEIAPMNFKRCYVS-----------------TAVHQDVIYAMG 148
+ + + K R Y
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 149 GYNGQRRQNSVEKYNYTENQWSLIAPMN------CMIQNVTYNIYVIGG------FDGNE 196
++ + + N + + + ++ GG F+ +
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318
Query: 197 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--HQDVIYAMGG---YNGQRRQNSVEKY 251
+ + + + P + R Y S ++ ++ GG + + +
Sbjct: 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Query: 252 N 252
Sbjct: 379 T 379
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 13/125 (10%)
Query: 52 GGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGY--NIYVIGG------F 103
S + + T + + + T+V+ + ++ GG F
Sbjct: 255 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 314
Query: 104 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--HQDVIYAMGG---YNGQRRQNS 158
+ + + + + + P + R Y S ++ ++ GG +
Sbjct: 315 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFD 374
Query: 159 VEKYN 163
+ +
Sbjct: 375 AQIFT 379
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 35/220 (15%)
Query: 35 TPEIARPRVPHEI--------LFAIGGWS------GGSPTDFVETYDTRADRWVKIDQVD 80
P I P VP + + ++D
Sbjct: 12 GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 81 PMGPRAYHGTAVIGY-NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 139
G ++ G I V GG D + +++ + W M R Y S+A
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 140 HQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCM---------IQNVTYNIYV 188
V G ++G + + E Y+ + W+ + + + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 189 IGGFDGNEYY-----NSCRCFNAVTKVWKEIAPMNFKRCY 223
G G+ + + + + K R
Sbjct: 188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 227
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 49.8 bits (117), Expect = 9e-07
Identities = 16/220 (7%), Positives = 43/220 (19%), Gaps = 38/220 (17%)
Query: 70 ADRWVKIDQVDPMGPRAYHGTAVIGYN-IYVIGGFD------GNEYYNSCRCFNAVTKVW 122
RW + + + + ++ T +
Sbjct: 8 LGRW---GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV 64
Query: 123 KEIAPMNFKR---CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMI 179
+ K C + I GG + Y+ + + W M
Sbjct: 65 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVAR 120
Query: 180 QNVTYNIYVIG-------GFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV---- 228
+ G + G + + ++ +K W + +
Sbjct: 121 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180
Query: 229 ----------HQDVIYAMGGYNGQRRQNSVEKYNYTENQD 258
+ ++ G + +
Sbjct: 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 220
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 49.4 bits (116), Expect = 9e-07
Identities = 24/267 (8%), Positives = 58/267 (21%), Gaps = 41/267 (15%)
Query: 32 EVPTPEIARPRVPHEILFAIGG---WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYH 88
+ I G +GG+ YD+ +D W+ +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS 125
Query: 89 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--------- 139
T G + G + G + + ++ +K W + +
Sbjct: 126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 185
Query: 140 -----HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN-----------------C 177
+ ++ G + +
Sbjct: 186 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 245
Query: 178 MIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAM 236
++ Y N + + + F R + ++ V +
Sbjct: 246 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT 305
Query: 237 GG------YNGQRRQNSVEKYNYTENQ 257
GG + + E Y ++
Sbjct: 306 GGQRRGIPFEDSTPVFTPEIYVPEQDT 332
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 49.4 bits (116), Expect = 9e-07
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 20/157 (12%)
Query: 117 AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQN------SVEKYNYTENQWS 170
W + + + Y ++ + S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 171 LIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC 222
C ++ N I V GG D + +++ + W M R
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARG 121
Query: 223 YVSTAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQ 257
Y S+A V G ++G + + E Y+ +
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF------NGVTTIYHVECYDEKTDEWY 725
P W D+ + AIE + + I +D T
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 726 EATDMNIYRSALSACVIM 743
+ T + M
Sbjct: 66 DRTVTVTKHDMFCPGISM 83
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 228 VHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFER--------KLHITEDNVAS 279
H+ V+ A G + +++ N D + F +L++ E N+ +
Sbjct: 39 AHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMA 98
Query: 280 LLLATDFFCMSKAQDLCCDFIK 301
++ + M D C FIK
Sbjct: 99 VMATAMYLQMEHVVDTCRKFIK 120
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 7e-04
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 228 VHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEE---KKLFERKLHITEDNVASLLLAT 284
H+ V+ + + Y K + + + L +++ LL A
Sbjct: 42 AHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
Query: 285 DFFCMSKAQDLCCDFIKRL 303
+ + ++ C ++ +
Sbjct: 102 EILEIEYLEEQCLKMLETI 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 98.98 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 98.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.69 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.22 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 96.02 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.0 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 96.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.69 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.67 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.42 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 95.39 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.28 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 95.19 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 95.1 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.0 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 94.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.94 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.68 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.53 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 94.38 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 94.2 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.18 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.14 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 94.12 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.04 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.39 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 92.99 | |
| d1fs1b1 | 55 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 92.96 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 92.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.66 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.63 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.36 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 91.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 91.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.78 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 91.61 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 91.49 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 91.07 | |
| d1nexa1 | 70 | Centromere DNA-binding protein complex Cbf3 subuni | 90.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 90.44 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 90.39 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 90.05 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 88.54 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 88.35 | |
| d1v0ea1 | 516 | Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 | 88.2 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 87.79 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 87.77 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 87.05 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 86.89 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 86.58 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.23 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 85.68 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 84.74 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.98 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.48 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 82.23 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 81.53 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 80.65 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 80.48 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-41 Score=355.95 Aligned_cols=279 Identities=35% Similarity=0.700 Sum_probs=261.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC----CCcccceEEEEECCCCc
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD----GNEYYNSCRCFNAVTKV 535 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~yd~~~~~ 535 (824)
+.|+++||... +..+.+++||+.+++|..+ +++|.+|.+|++++++++|||+||.. +....+++++||+.+++
T Consensus 5 ~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~--~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 81 (288)
T d1zgka1 5 RLIYTAGGYFR-QSLSYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 81 (288)
T ss_dssp CCEEEECCBSS-SBCCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CEEEEECCcCC-CCCceEEEEECCCCeEEEC--CCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccc
Confidence 57999999864 5778999999999999994 67888999999999999999999963 23457899999999999
Q ss_pred eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCC
Q psy17309 536 WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 615 (824)
Q Consensus 536 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 615 (824)
|..++++|.+|..|+++++++++|++||..+...+++++.||+.++.|...+.++.+|.+|+++..++++|++||.+...
T Consensus 82 w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~ 161 (288)
T d1zgka1 82 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 161 (288)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred ccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCccccc
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999998777
Q ss_pred cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE
Q psy17309 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI 695 (824)
Q Consensus 616 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (824)
...+++.||+.+++|...+.++.++..++++..+++||++||.+.....++.+.||+.+++|+.++++|.+|..|+++.+
T Consensus 162 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 241 (288)
T d1zgka1 162 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 241 (288)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE
Confidence 78899999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEE
Q psy17309 696 DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741 (824)
Q Consensus 696 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 741 (824)
+++|||+||.+....++++++||+++++|+.+++||.+|.+|++|+
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~ 287 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred CCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence 9999999999888888999999999999999999999999998875
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-40 Score=342.81 Aligned_cols=200 Identities=39% Similarity=0.658 Sum_probs=186.8
Q ss_pred CCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEE
Q psy17309 495 PMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 495 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 574 (824)
+|.+|..|+++++++++|++||..+....+.++.||+.+++|...+.++.+|..|+++..++.+|++||........+++
T Consensus 88 ~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~ 167 (288)
T d1zgka1 88 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 167 (288)
T ss_dssp CSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred ccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEE
Confidence 33467777888889999999998877788899999999999999999999999999999999999999998777788999
Q ss_pred EEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEE
Q psy17309 575 KYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYV 654 (824)
Q Consensus 575 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 654 (824)
.||+.+++|...+.++.++..++++..+++||++||.+.....++.+.||+.+++|+.++++|.+|..|+++.++++|||
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v 247 (288)
T d1zgka1 168 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 247 (288)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred EeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEE
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred EecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE
Q psy17309 655 IGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (824)
+||.+....++++++||+.+++|+++++||.+|..|++|+
T Consensus 248 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~ 287 (288)
T d1zgka1 248 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287 (288)
T ss_dssp ECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred EecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence 9999888888999999999999999999999999998875
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=1e-32 Score=301.04 Aligned_cols=218 Identities=14% Similarity=0.195 Sum_probs=157.5
Q ss_pred CCceeEEEEE-CCEEEEEeecC-CCcccceEEEEECCCCceEEeccCCCCcce--------------EEEEEECCEEEEE
Q psy17309 498 PRAYHGTAVI-GYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCY--------------VSTAVHQDVIYAM 561 (824)
Q Consensus 498 ~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--------------~~~~~~~~~iyv~ 561 (824)
+|..|+++++ ++++|++||.. .....+++++||+.+++|..++.++.+... ......++++|++
T Consensus 119 ~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 198 (387)
T d1k3ia3 119 ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198 (387)
T ss_dssp CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEEC
T ss_pred cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEe
Confidence 3444555555 56888888864 345678999999999999999876543211 1112225666666
Q ss_pred ecccCCCCCCeEEEEeCCCCcEEeecCCCc-------ccCceEEEE--ECCEEEEEcccCCCC---cCCc-----eEEEe
Q psy17309 562 GGYNGQRRQNSVEKYNYTENQWSLIAPMNV-------ERSDASATT--LQGKIYITGGFNGHN---CLNS-----CEVYD 624 (824)
Q Consensus 562 GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~-------~r~~~~~~~--~~~~lyv~GG~~~~~---~~~~-----v~~yd 624 (824)
|| ....++.||+.+..|...+.++. ++.++++.. .++++|++||..... .... ++.++
T Consensus 199 g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
T d1k3ia3 199 GP-----STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG 273 (387)
T ss_dssp CS-----SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred cC-----cCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccc
Confidence 66 34678999999999988765443 334444433 279999999975421 1112 22334
Q ss_pred CCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCC------CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--
Q psy17309 625 PECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNG------MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-- 695 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 695 (824)
+..+.|+.+++||.+|..++++++ +++|||+||... ......+++||+++++|+.++++|.+|..|+++++
T Consensus 274 ~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~ 353 (387)
T d1k3ia3 274 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP 353 (387)
T ss_dssp SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT
T ss_pred cCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECC
Confidence 556789999999999999999888 789999999542 23466799999999999999999999999998877
Q ss_pred CCEEEEEccCCCC---ceeeEEEEEECC
Q psy17309 696 DDMIFAIGGFNGV---TTIYHVECYDEK 720 (824)
Q Consensus 696 ~~~i~v~GG~~~~---~~~~~v~~yd~~ 720 (824)
+++|||+||.... ....++++|||-
T Consensus 354 dG~v~v~GG~~~~~~~~~~~~~e~y~Pp 381 (387)
T d1k3ia3 354 DGRVFNGGGGLCGDCTTNHFDAQIFTPN 381 (387)
T ss_dssp TSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred CCEEEEEeCCCcCCCCcccceEEEEcch
Confidence 8999999996322 245689999973
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=6e-30 Score=278.90 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=214.3
Q ss_pred CCEEEEEccCCCCC------CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEEC
Q psy17309 459 HEILFAIGGWSGGS------PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNA 531 (824)
Q Consensus 459 ~~~l~~~GG~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~ 531 (824)
.+.|+++||..... ....++.|||.+++|..++....+..+..++.++. +++||++||.+. +++++||+
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~----~~~~~yd~ 105 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDS 105 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEG
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC----cceeEecC
Confidence 57899999975432 23358899999999988655555555555555555 789999998653 67899999
Q ss_pred CCCceEEeccCCCCcceEEEEEE-CCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCcccCce-------------
Q psy17309 532 VTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDA------------- 596 (824)
Q Consensus 532 ~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~------------- 596 (824)
.+++|..+++|+.+|..|+++++ +++||++||.. ....++++++||+.+++|+.++.++.++...
T Consensus 106 ~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (387)
T d1k3ia3 106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 185 (387)
T ss_dssp GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred ccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecccee
Confidence 99999999999999999998887 67999999975 4456789999999999999987765432211
Q ss_pred -EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC-------CCcceEEEE--ECCEEEEEecCCCCCc---
Q psy17309 597 -SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH-------RRSGVSCIA--YHECIYVIGGFNGMSR--- 663 (824)
Q Consensus 597 -~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-------~r~~~~~~~--~~~~iyv~GG~~~~~~--- 663 (824)
.....++++|++||. ...++.||+.+..|.....++. ++.++++.. .++++|++||......
T Consensus 186 ~~~~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 186 WLFGWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp CEEECGGGCEEECCSS-----SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred EEEEeCCCCEEEecCc-----CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 111225666666654 3578899999999998764432 233333333 3799999999643321
Q ss_pred cceE-----EEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCC------CceeeEEEEEECCCCcEEeccCCC
Q psy17309 664 MCNG-----EKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNG------VTTIYHVECYDEKTDEWYEATDMN 731 (824)
Q Consensus 664 ~~~v-----~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p 731 (824)
.... +.+++...+|+.+++||.+|..++++++ +++|||+||... .....++++|||++++|+.+++||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~ 340 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 340 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC
Confidence 1122 2234455679999999999999998888 789999999753 235567999999999999999999
Q ss_pred CCccceeEEEE--cCccceeccc
Q psy17309 732 IYRSALSACVI--MGLPNVYDYI 752 (824)
Q Consensus 732 ~~r~~~~~~~~--~~~~~~~~~~ 752 (824)
.+|..|+++++ +++++++++.
T Consensus 341 ~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 341 IVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEEECCCCEEEEEeCC
Confidence 99999998887 7899998764
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.4e-11 Score=105.38 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=64.4
Q ss_pred eeeecceEEEEccccc---ccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 226 TAVHQDVIYAMGGYNG---QRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 226 ~~~~~~~~~~~~g~~~---e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
+.+|+.++.+.+++|. ++..++++++++++++|+.+|+|+|||++.++.+|+.+++.+|++|+++.|++.|.+||++
T Consensus 40 ~~aHk~vLaa~S~~F~~lf~~~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 40 FHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp EEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EEEEHHHhcccChhhhhhccCccceeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3345555544455443 2345679999999999999999999999999999999999999999999999999999975
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.6e-11 Score=104.87 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=75.1
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++.+.+|..| .+.+.++.+..+.+.++++++|+.+++|+|||++.++.+++.+++.+|++|+++.|++.|
T Consensus 36 ~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C 115 (122)
T d1r29a_ 36 QFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTC 115 (122)
T ss_dssp EEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHH
Confidence 3567777788888888887 566667777777788999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy17309 297 CDFIKR 302 (824)
Q Consensus 297 ~~~l~~ 302 (824)
.+||++
T Consensus 116 ~~~L~~ 121 (122)
T d1r29a_ 116 RKFIKA 121 (122)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.69 E-value=0.2 Score=50.33 Aligned_cols=242 Identities=12% Similarity=0.135 Sum_probs=124.1
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
.+.++++|+. ...+..||..++++..+..... ....-.+++.. ++..++.||.+ ..+..||+.++.|.
T Consensus 18 dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 18 DRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWK 86 (371)
T ss_dssp TSSEEEEECS-----SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEE
T ss_pred CCCEEEEEeC-----CCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECC-----CeEEEEeecccccc
Confidence 3456666653 2468889988888766422110 11122334444 55666677754 35888999999998
Q ss_pred EeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCC
Q psy17309 538 EIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNG 613 (824)
Q Consensus 538 ~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~ 613 (824)
........... .++... ++..++.|+.++ .-.++.++.....+.........+.....+.. ++++++.|+.++
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~ 163 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccccccccceeecccC---cceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence 76555433322 333332 566666666432 12455566566555544333322333233333 567777777653
Q ss_pred CCcCCceEEEeCCCCeEEEcC-------CC---------CCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC
Q psy17309 614 HNCLNSCEVYDPECNQWTLIE-------PM---------RHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~-------~~---------p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
.+..||.......... .. .........+.+ ++..++.|+.+ ..+..+|..+.
T Consensus 164 -----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~ 233 (371)
T d1k8kc_ 164 -----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKK 233 (371)
T ss_dssp -----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGT
T ss_pred -----EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceEEeeecc
Confidence 4566766543321110 00 011111122222 56666777754 46778887654
Q ss_pred CEEECCCCCCCCc-ceEEE-EECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCC
Q psy17309 676 TWSQVPDMYNPRS-NFAIE-VIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 730 (824)
Q Consensus 676 ~W~~~~~~p~~r~-~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (824)
.= +..+..... -.+++ .-++++++. |.++. ..++.+|..+..|.....+
T Consensus 234 ~~--~~~~~~~~~~v~s~~fs~d~~~la~-g~d~~---~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 234 MA--VATLASETLPLLAVTFITESSLVAA-GHDCF---PVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp TE--EEEEECSSCCEEEEEEEETTEEEEE-ETTSS---CEEEEEETTTTEEEECCCC
T ss_pred cc--eeeeecccccceeeeecCCCCEEEE-EcCCc---eEEEEeeCCCceEEEeeee
Confidence 31 111111111 11222 237777665 44432 2578889888888776544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.22 E-value=0.08 Score=53.57 Aligned_cols=151 Identities=10% Similarity=0.134 Sum_probs=86.6
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcc-eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC-YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.++++|+.+ ..+..||..++++..+..+..... -.+++.. ++..++.||.+ ..+.++|+.++.|..
T Consensus 18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKP 87 (371)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEeeccccccc
Confidence 45566667643 468899999988887765533222 2233333 56666677753 458889999999987
Q ss_pred ecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q psy17309 586 IAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGM 661 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 661 (824)
...+.........+.. +++.++.|+.++. -.++.++.....+.........+....++.+ ++++++.|+.+
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~---i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D-- 162 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGSGSRV---ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-- 162 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSS---EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT--
T ss_pred ccccccccccccccccccccccceeecccCc---ceeeeeecccccccccccccccccccccccccccccceeccccC--
Confidence 6554443333333333 5666666664431 2345556556656544333322333333333 57777778764
Q ss_pred CccceEEEEeCCCCC
Q psy17309 662 SRMCNGEKYNPVTKT 676 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~ 676 (824)
..+..||.....
T Consensus 163 ---~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 163 ---FKCRIFSAYIKE 174 (371)
T ss_dssp ---SCEEEEECCCTT
T ss_pred ---cEEEEEeeccCc
Confidence 356677765443
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.19 Score=45.34 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=84.8
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe------ccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI------APMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~------~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
+++.+++.+|+|=| ..+|+++.....+... +.+|.. ..++... .++.+|++-| +.+|+
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-IDAAf~~~~~~~~yffkg-------~~~w~ 77 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-IDAAYEHPSHDLIFIFRG-------RKFWA 77 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CCEEEEETTTTEEEEEET-------TEEEE
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCc-ccceEEEcCCCEEEEEcC-------CEEEE
Confidence 56677999999987 5677777655444321 133322 2222222 2688999988 57899
Q ss_pred EeCCCCcE---EeecC--CCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----c----CCCCC
Q psy17309 576 YNYTENQW---SLIAP--MNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----I----EPMRH 638 (824)
Q Consensus 576 yd~~t~~W---~~~~~--~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~ 638 (824)
|+..+... +.+.. +|.+-....++.. ++++|++-| +..++||..++.=.. + +.+|.
T Consensus 78 y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~ 150 (192)
T d1pexa_ 78 LNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD 150 (192)
T ss_dssp ESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSCS
T ss_pred EcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCCCCC
Confidence 98655433 22322 2222223334433 689999977 457888877654221 1 12332
Q ss_pred CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 639 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
.. .++...+|++|++-| +..++||..+.+
T Consensus 151 -~v-dAa~~~~g~~YfF~g-------~~y~r~~~~~~~ 179 (192)
T d1pexa_ 151 -KV-DAVYEKNGYIYFFNG-------PIQFEYSIWSNR 179 (192)
T ss_dssp -CC-SEEEEETTEEEEEET-------TEEEEEETTTTE
T ss_pred -Cc-eEEEEeCCEEEEEEC-------CEEEEEeCCcCe
Confidence 22 244567999999988 578888877654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.00 E-value=0.73 Score=44.77 Aligned_cols=190 Identities=10% Similarity=0.029 Sum_probs=98.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce-EEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY-VSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+++.|+.+ ..+..||..+........++..... .+++.. ++..++.+|.+.. ..+.+++..+.+-
T Consensus 69 ~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~~-- 138 (311)
T d1nr0a1 69 SGYYCASGDVH-----GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFDTGTS-- 138 (311)
T ss_dssp TSSEEEEEETT-----SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEEEETTTCCB--
T ss_pred CCCeEeccccC-----ceEeeeeeeccccccccccccccCcccccccccccccccccccccc---ccccccccccccc--
Confidence 66777888765 4588999888765322222211111 222222 5666666663322 3355666665432
Q ss_pred ecCCCcccCceEEEEE--CC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 586 IAPMNVERSDASATTL--QG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
...+.........+.+ ++ .+++.|+.+ ..+..||..+.+-...-. .......++.. ++.+++.|+.+
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p~~~~l~~~~~d- 210 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGD- 210 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-
T ss_pred cccccccccccccccccccceeeecccccc-----cccccccccccccccccc--cccccccccccCcccccccccccc-
Confidence 2222221222222223 33 456667654 357889988765433221 11222223333 67777777754
Q ss_pred CCccceEEEEeCCCCCEEEC-CCCCCCCc----ceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 661 MSRMCNGEKYNPVTKTWSQV-PDMYNPRS----NFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~-~~~p~~r~----~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+-... ........ ....+.+ +++.++.||.++ .+.+||.++.+-
T Consensus 211 ----~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~ 272 (311)
T d1nr0a1 211 ----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKV 272 (311)
T ss_dssp ----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred ----ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 4678899877654332 11111111 1122333 677888888765 688999988754
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.24 Score=44.62 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=83.1
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEee------cCCCcccCceEEEE-E--CCEEEEEcccCCCCcCCce
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI------APMNVERSDASATT-L--QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~------~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~v 620 (824)
+++.++|.+|+|-| ..+|+++.....+... +.+|.. .-+|. . ++++|++-| +.+
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~---IDAAf~~~~~~~~yffkg-------~~~ 75 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR---IDAAYEHPSHDLIFIFRG-------RKF 75 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS---CCEEEEETTTTEEEEEET-------TEE
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCc---ccceEEEcCCCEEEEEcC-------CEE
Confidence 56678999999987 5677777655444321 345533 22332 2 688998877 456
Q ss_pred EEEeCCCCeE---EEcCC--CCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC----CCC
Q psy17309 621 EVYDPECNQW---TLIEP--MRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV----PDM 683 (824)
Q Consensus 621 ~~yd~~~~~W---~~~~~--~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 683 (824)
++|+..+... ..+.. +|.+-....+|.. ++++|++-| +..++||..++.=. .+ +.+
T Consensus 76 w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~gv 148 (192)
T d1pexa_ 76 WALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGI 148 (192)
T ss_dssp EEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTS
T ss_pred EEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCCC
Confidence 7776544322 22322 2222222223332 589999988 57889987665311 11 223
Q ss_pred CCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 684 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 684 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
|.. -.++...++++|++-|. ..+.||..+.+=
T Consensus 149 p~~--vdAa~~~~g~~YfF~g~-------~y~r~~~~~~~v 180 (192)
T d1pexa_ 149 GDK--VDAVYEKNGYIYFFNGP-------IQFEYSIWSNRI 180 (192)
T ss_dssp CSC--CSEEEEETTEEEEEETT-------EEEEEETTTTEE
T ss_pred CCC--ceEEEEeCCEEEEEECC-------EEEEEeCCcCeE
Confidence 322 22444679999999663 678899877543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.69 E-value=0.3 Score=46.75 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=111.6
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
.+|+.+. ..+.+..+|+.+.+.... .+. ...-+++++. +.+||+.++.+ +.+.+||..+++-..
T Consensus 3 ~~yV~~~-----~~~~v~v~D~~t~~~~~~--i~~--g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~ 68 (301)
T d1l0qa2 3 FAYIANS-----ESDNISVIDVTSNKVTAT--IPV--GSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIA 68 (301)
T ss_dssp EEEEEET-----TTTEEEEEETTTTEEEEE--EEC--SSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEE
T ss_pred EEEEEEC-----CCCEEEEEECCCCeEEEE--EEC--CCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceee
Confidence 4555543 234688999999987642 111 1223445554 45688776532 569999998876432
Q ss_pred eccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CC-EEEEEcccCCC
Q psy17309 539 IAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QG-KIYITGGFNGH 614 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~ 614 (824)
.++....-+.++.. ++ .+++.+.. ...+..+|..+.+....-. .......++.. ++ .+++.+..+
T Consensus 69 --~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~-- 137 (301)
T d1l0qa2 69 --TVPAGSSPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGD-- 137 (301)
T ss_dssp --EEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTT--
T ss_pred --eeeccccccccccccccccccccccc-----cceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccc--
Confidence 22222223344443 33 45554432 2467788888776543322 12222233333 34 454444322
Q ss_pred CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 615 NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 615 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
..+..++..+.......+.. ......+.. ++.+|+.+.. ...+..++....+......... ...+.
T Consensus 138 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 205 (301)
T d1l0qa2 138 ---KTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVKVEA--APSGI 205 (301)
T ss_dssp ---TEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSS--EEEEE
T ss_pred ---cceeeeeccccceeeecccC--CCceEEEeeccccceeeeccc-----ccccccccccceeeeecccccC--Cccee
Confidence 45677888777654432211 111222222 3456665442 2345566666655444322221 11122
Q ss_pred EEE--CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 693 EVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 693 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
+.. +..+|+.+... ..+.+.+||+.+.+-
T Consensus 206 ~~~~~g~~~~v~~~~~---~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 206 AVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKI 236 (301)
T ss_dssp EECTTSSEEEEEEECS---SCCEEEEEETTTTEE
T ss_pred eccccccccccccccc---eeeeeeeeecCCCeE
Confidence 222 45666654321 224689999988654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.67 E-value=0.5 Score=45.82 Aligned_cols=194 Identities=10% Similarity=0.002 Sum_probs=102.1
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc----cCceEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE----RSDASAT 599 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~----r~~~~~~ 599 (824)
..++++|+.+++-.... +|.. ....+..-++.+++... +.+.+||+.+++++.+.+.+.. |.+...+
T Consensus 40 ~~I~r~d~~~g~~~~~~-~~~~-~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v 110 (295)
T d2ghsa1 40 RELHELHLASGRKTVHA-LPFM-GSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRM 110 (295)
T ss_dssp TEEEEEETTTTEEEEEE-CSSC-EEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEE-CCCC-cEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeecCCCcccceeeEE
Confidence 57999999998755432 2221 12222334777777532 4689999999999888654432 3333333
Q ss_pred EECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC-CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP-MRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 600 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
--+|.+|+.-.... .....-..|....++.+.+.. +.. . -+.+.. ++.+|+..-. ...+++|+.....
T Consensus 111 d~~G~iw~~~~~~~-~~~~~g~l~~~~~g~~~~~~~~~~~--~-Ng~~~s~d~~~l~~~dt~-----~~~I~~~~~d~~~ 181 (295)
T d2ghsa1 111 HPSGALWIGTMGRK-AETGAGSIYHVAKGKVTKLFADISI--P-NSICFSPDGTTGYFVDTK-----VNRLMRVPLDART 181 (295)
T ss_dssp CTTSCEEEEEEETT-CCTTCEEEEEEETTEEEEEEEEESS--E-EEEEECTTSCEEEEEETT-----TCEEEEEEBCTTT
T ss_pred CCCCCEEEEecccc-ccccceeEeeecCCcEEEEeeccCC--c-ceeeecCCCceEEEeecc-----cceeeEeeecccc
Confidence 33788887533221 122333445445566555431 111 1 122222 3457776542 3678888764321
Q ss_pred --E----EECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEc
Q psy17309 677 --W----SQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 743 (824)
Q Consensus 677 --W----~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 743 (824)
+ ......+......-...+ +|.||+..-.. ..|.+|||+......+ .+|.++ .++|+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-----g~V~~~dp~G~~~~~i-~lP~~~--~T~~~FG 248 (295)
T d2ghsa1 182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARY-EVPGKQ--TTCPAFI 248 (295)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEE-ECSCSB--EEEEEEE
T ss_pred cccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-----CceEEecCCCcEeeEe-cCCCCc--eEEEEEe
Confidence 1 111112222222222333 67888872111 1699999988776665 556543 3455554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=1.1 Score=43.14 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=113.1
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEEC
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 555 (824)
.+..++..+.+....... ..............++.|+.+ ..+..+|+...+-.. .+............+
T Consensus 118 ~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~ 186 (342)
T d2ovrb2 118 TLRVWDIETGQCLHVLMG----HVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLH--TLQGHTNRVYSLQFD 186 (342)
T ss_dssp EEEEEESSSCCEEEEEEC----CSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEE--EECCCSSCEEEEEEC
T ss_pred eEEEeecccccceeeeec----ccccceeeccccceeeeecCC-----CeEEEeecccceeeE--EEcCcccccccccCC
Confidence 456666666655432111 111222333445556666643 346777776554221 121122223344557
Q ss_pred CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC
Q psy17309 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE 634 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~ 634 (824)
+..++.|+.+ ..+..||..+.+-.... ........+...++.+++.|+.+ ..+..||..+.+-.. +.
T Consensus 187 ~~~l~s~~~d-----g~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~ 254 (342)
T d2ovrb2 187 GIHVVSGSLD-----TSIRVWDVETGNCIHTL--TGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQTLQ 254 (342)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCCEEEEE--CCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEEC
T ss_pred CCEEEEEeCC-----CeEEEeecccceeeeEe--cccccceeEEecCCCEEEEEcCC-----CEEEEEeccccccccccc
Confidence 7777777754 45788888776533221 11112222333445566777654 468889987765433 33
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-CCCCCCCCcc--eEEEEE--CCEEEEEccCCCCc
Q psy17309 635 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-VPDMYNPRSN--FAIEVI--DDMIFAIGGFNGVT 709 (824)
Q Consensus 635 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~--~~~~~~--~~~i~v~GG~~~~~ 709 (824)
..........+...++.+++.|+.+ ..+.+||+.+.+-.. +.....+... ...+.. ++.+++.|+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~ 329 (342)
T d2ovrb2 255 GPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329 (342)
T ss_dssp STTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred ccceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC
Confidence 2223334444556677888888754 468899998876432 2222111111 112222 55677777766532
Q ss_pred eeeEEEEEECCC
Q psy17309 710 TIYHVECYDEKT 721 (824)
Q Consensus 710 ~~~~v~~yd~~~ 721 (824)
...++++|.+.
T Consensus 330 -~~~l~~~Df~~ 340 (342)
T d2ovrb2 330 -ETKLLVLDFDV 340 (342)
T ss_dssp -CCEEEEEECCC
T ss_pred -eeEEEEEeCCC
Confidence 23577777654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.42 E-value=0.67 Score=44.82 Aligned_cols=203 Identities=6% Similarity=-0.050 Sum_probs=107.8
Q ss_pred CceEEEEECCCCcEEEcccCCCCCCCceeEEEE-ECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC----cce
Q psy17309 474 TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAV-IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK----RCY 548 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~ 548 (824)
...++.+|+.+++-.....+. ...+++. -++.+++... +.+..||+.+++++.+...... |..
T Consensus 39 ~~~I~r~d~~~g~~~~~~~~~-----~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~~~~~~~~n 106 (295)
T d2ghsa1 39 ERELHELHLASGRKTVHALPF-----MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSN 106 (295)
T ss_dssp GTEEEEEETTTTEEEEEECSS-----CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred CCEEEEEECCCCeEEEEECCC-----CcEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeecCCCcccce
Confidence 356889999988765533222 1223333 3777776532 4699999999999887654322 333
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC-CCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP-MNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
-..+--+|.+|+..-.. ......-..|....++.+.+.. +.. . -+.+.. ++.+|+..- ....+++|+.
T Consensus 107 d~~vd~~G~iw~~~~~~-~~~~~~g~l~~~~~g~~~~~~~~~~~--~-Ng~~~s~d~~~l~~~dt-----~~~~I~~~~~ 177 (295)
T d2ghsa1 107 DGRMHPSGALWIGTMGR-KAETGAGSIYHVAKGKVTKLFADISI--P-NSICFSPDGTTGYFVDT-----KVNRLMRVPL 177 (295)
T ss_dssp EEEECTTSCEEEEEEET-TCCTTCEEEEEEETTEEEEEEEEESS--E-EEEEECTTSCEEEEEET-----TTCEEEEEEB
T ss_pred eeEECCCCCEEEEeccc-cccccceeEeeecCCcEEEEeeccCC--c-ceeeecCCCceEEEeec-----ccceeeEeee
Confidence 33343477887754322 2122333444445565554431 211 1 122222 446777643 2356888875
Q ss_pred CCC--e----EEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEEC-
Q psy17309 626 ECN--Q----WTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVID- 696 (824)
Q Consensus 626 ~~~--~----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~- 696 (824)
..+ . .......+......-...+ +|.||+..-. ...|.+|||+......+ .+|.+ ..++++++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-----~g~V~~~dp~G~~~~~i-~lP~~--~~T~~~FGG 249 (295)
T d2ghsa1 178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIARY-EVPGK--QTTCPAFIG 249 (295)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEEEE-ECSCS--BEEEEEEES
T ss_pred cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC-----CCceEEecCCCcEeeEe-cCCCC--ceEEEEEeC
Confidence 422 1 1111122222223333333 6789987321 14799999987776665 34443 34555553
Q ss_pred ---CEEEEEccC
Q psy17309 697 ---DMIFAIGGF 705 (824)
Q Consensus 697 ---~~i~v~GG~ 705 (824)
+.|||.-..
T Consensus 250 ~d~~~LyvTta~ 261 (295)
T d2ghsa1 250 PDASRLLVTSAR 261 (295)
T ss_dssp TTSCEEEEEEBC
T ss_pred CCCCEEEEEECC
Confidence 468887543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.24 Score=44.70 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=82.7
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe--e----cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceE
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL--I----APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 621 (824)
+++..+|.+|+|-| ..+|+++........ + +.+|.... ++... ++++|++-| +..+
T Consensus 16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~glp~~ID--AAf~~~~~~~~yfFkG-------~~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLE--AAYEFADRDEVRFFKG-------NKYW 79 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCC--EEEEEGGGTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhhCcCCCCccc--ceEEecCCcEEEEECC-------cEEE
Confidence 56678999999987 345665555444321 1 23444321 22223 589999987 5677
Q ss_pred EEeCCCCe---EEEcC---CCCCCCcceEEE-EE--CCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC----CCC
Q psy17309 622 VYDPECNQ---WTLIE---PMRHRRSGVSCI-AY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV----PDM 683 (824)
Q Consensus 622 ~yd~~~~~---W~~~~---~~p~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 683 (824)
+|+..+.. -..+. .+|.......++ .. ++++|++-| +..++||..+++=. .+ +.+
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w~Gv 152 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 152 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccccCCC
Confidence 88743211 12221 233332222233 32 579999998 57899998765311 11 223
Q ss_pred CCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 684 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 684 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
|.. --++...++++|++=|. ..+.||+.+.+=
T Consensus 153 p~~--iDAAf~~~g~~YfFkg~-------~y~r~~~~~~~v 184 (195)
T d1su3a2 153 GHK--VDAVFMKDGFFYFFHGT-------RQYKFDPKTKRI 184 (195)
T ss_dssp CSC--CSEEEEETTEEEEEETT-------EEEEEETTTTEE
T ss_pred CCC--ccEEEEECCeEEEEECC-------EEEEEeCCcCEE
Confidence 322 23445669999999764 688999877643
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.28 E-value=0.36 Score=47.17 Aligned_cols=178 Identities=11% Similarity=0.032 Sum_probs=90.1
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
+.+..+|..+..=..+- ........++.+ ++.+++.|+.+ ..+.+||..+........++.......++..
T Consensus 38 ~~v~i~~~~~~~~~~~~--~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 110 (311)
T d1nr0a1 38 TSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110 (311)
T ss_dssp TEEEEEETTCSSCCEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred CEEEEEECCCCceeEEE--cCCCCCEEEEEEeCCCCeEeccccC-----ceEeeeeeeccccccccccccccCccccccc
Confidence 45788888765322211 111122222222 67777888864 4688899888764322222211111222222
Q ss_pred --CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCE-EEEEecCCCCCccceEEEEeCCCCC
Q psy17309 602 --QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HEC-IYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 602 --~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
+++.++.+|.+. ...+.++|.++.+- ...+.........+.+ ++. +++.|+.+ ..+.+||..+.+
T Consensus 111 s~d~~~l~~~~~~~---~~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~ 180 (311)
T d1nr0a1 111 DSESKRIAAVGEGR---ERFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFK 180 (311)
T ss_dssp CTTSCEEEEEECCS---SCSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBE
T ss_pred cccccccccccccc---cccccccccccccc--cccccccccccccccccccceeeecccccc-----cccccccccccc
Confidence 566666666432 23456777766542 2223222222233333 343 56667654 457889987654
Q ss_pred EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 677 WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 677 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
-...- .........+.+ ++++++.|+.++ .+.+||..+++-.
T Consensus 181 ~~~~~--~~~~~~i~~v~~~p~~~~l~~~~~d~-----~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 181 FKSTF--GEHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGTKT 224 (311)
T ss_dssp EEEEE--CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred ccccc--ccccccccccccCccccccccccccc-----ccccccccccccc
Confidence 33221 111112223333 677778887655 4788888776543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.13 Score=46.51 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=83.6
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEE--e----ccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE--I----APMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (824)
+++..++.+|+|-| ..+|+++........ + +.+|..- . ++... ++++|++-| +..+
T Consensus 16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~glp~~I-D-AAf~~~~~~~~yfFkG-------~~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKG-------NKYW 79 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhhCcCCCCcc-c-ceEEecCCcEEEEECC-------cEEE
Confidence 56677999999987 446666555444321 1 1233222 1 23223 589999988 6789
Q ss_pred EEeCCCCcE---Eeec---CCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEE-----Ec----CCC
Q psy17309 575 KYNYTENQW---SLIA---PMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWT-----LI----EPM 636 (824)
Q Consensus 575 ~yd~~t~~W---~~~~---~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 636 (824)
+|+-.+... ..+. .+|.......++.. ++++|+|-| +..++||..+++-. .+ +.+
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w~Gv 152 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 152 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccccCCC
Confidence 997433211 1111 13333333333333 579999987 46788988776422 11 123
Q ss_pred CCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 637 RHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 637 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
|.. . -++...+|++|++-| +..++||+.+.+
T Consensus 153 p~~-i-DAAf~~~g~~YfFkg-------~~y~r~~~~~~~ 183 (195)
T d1su3a2 153 GHK-V-DAVFMKDGFFYFFHG-------TRQYKFDPKTKR 183 (195)
T ss_dssp CSC-C-SEEEEETTEEEEEET-------TEEEEEETTTTE
T ss_pred CCC-c-cEEEEECCeEEEEEC-------CEEEEEeCCcCE
Confidence 332 2 244566999999998 578899987654
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.4 Score=43.15 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=82.9
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEE----e----ccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE----I----APMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~----~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 573 (824)
+++..++.+|+|-| ...|+++........ + +.+|.. -..+... .++++|++-| +.+
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg-------~~~ 75 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSG-------RQV 75 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEET-------TEE
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEec-------CEE
Confidence 46677999999988 567888755433221 1 133322 1122211 2679999987 578
Q ss_pred EEEeCCCCcE-EeecC--CCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-----c----CCCCCC
Q psy17309 574 EKYNYTENQW-SLIAP--MNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-----I----EPMRHR 639 (824)
Q Consensus 574 ~~yd~~t~~W-~~~~~--~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 639 (824)
|+|+-.+-.. +.+.. +|.......++.. ++++|+|=| +..++||..+++-.. + +.+|.
T Consensus 76 ~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~gvp~- 147 (195)
T d1itva_ 76 WVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL- 147 (195)
T ss_dssp EEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSCS-
T ss_pred EEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCCCCC-
Confidence 8887432111 12222 3333233333333 689999976 467899988765322 1 12332
Q ss_pred CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCC
Q psy17309 640 RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 640 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
.-.++...++++|++-| ...++||..+.
T Consensus 148 -~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 148 -DTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp -SCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred -CCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 23455667899999988 46788887544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.95 Score=43.76 Aligned_cols=183 Identities=14% Similarity=0.171 Sum_probs=95.3
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP 588 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 588 (824)
+.+.+.|+.+ ..+..+|..+.+...................++..++.|+.+ ..+..||..+..-...
T Consensus 171 ~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~-- 238 (355)
T d1nexb2 171 GNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMYT-- 238 (355)
T ss_dssp TTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCEEEE--
T ss_pred cceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeeccccc-----ceEEeeeccccccccc--
Confidence 3445555533 357788888776544333222222222223355666666643 4578888887654322
Q ss_pred CCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEE
Q psy17309 589 MNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGE 668 (824)
Q Consensus 589 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 668 (824)
+........++..+++.++.|+.++ .+..||..+..-..... ........+...++++++.|+ + ..+.
T Consensus 239 ~~~h~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~-d-----~~i~ 306 (355)
T d1nexb2 239 LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E-----NQFN 306 (355)
T ss_dssp ECCCSSCCCEEEECSSEEEEECTTS-----EEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEE-T-----TEEE
T ss_pred cccccccccccccccceeeeeeccc-----ccccccccccceecccc-cCCceEEEEEcCCCCEEEEEe-C-----CEEE
Confidence 1111222234455667777777653 57888887665322211 112222334455777766554 2 4688
Q ss_pred EEeCCCCCEEECCCCCCCCcc-eEEEEECCEEEEEccCCCCceeeEEEEEEC
Q psy17309 669 KYNPVTKTWSQVPDMYNPRSN-FAIEVIDDMIFAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 669 ~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 719 (824)
+||.++.+.... .+...... .+++.-++.+++.|+.++.. .+|++|.
T Consensus 307 vwd~~tg~~~~~-~~~~~~~~V~~v~~~~~~~~~~~s~dg~~---~l~~~df 354 (355)
T d1nexb2 307 IYNLRSGKLVHA-NILKDADQIWSVNFKGKTLVAAVEKDGQS---FLEILDF 354 (355)
T ss_dssp EEETTTCCBCCS-CTTTTCSEEEEEEEETTEEEEEEESSSCE---EEEEEEC
T ss_pred EEECCCCCEEEE-EecCCCCCEEEEEEcCCeEEEEEECCCcE---EEEEEeC
Confidence 999987753211 11111111 23333467776667666532 4677764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.97 E-value=1.1 Score=43.66 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=118.2
Q ss_pred CCEEEEEccCCC--CCCCceEEEEECCCCcEEEcccCCCCC-CCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCC
Q psy17309 459 HEILFAIGGWSG--GSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVT 533 (824)
Q Consensus 459 ~~~l~~~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~ 533 (824)
.+.+++...... ..+...+..+|+.++.+..+..+.... .-.-+++++. ++.+|+..+. +.+.++|+..
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~g 101 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTDG 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETTS
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCCC
Confidence 345665533221 223456999999999887643222111 1123345544 4578876542 4588999987
Q ss_pred CceEEeccCCCCc---c-eEEEEEECCEEEEEe--ccc--------CCCCCCeEEEEeCCCCcEEee-cCCCcccCceEE
Q psy17309 534 KVWKEIAPMNFKR---C-YVSTAVHQDVIYAMG--GYN--------GQRRQNSVEKYNYTENQWSLI-APMNVERSDASA 598 (824)
Q Consensus 534 ~~W~~~~~~~~~r---~-~~~~~~~~~~iyv~G--G~~--------~~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~~~ 598 (824)
.....+......+ . .-.++.-+|.||+.. |.. .......++++++... ...+ ..+..+ -+.
T Consensus 102 ~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~~~~~p---NGi 177 (314)
T d1pjxa_ 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFP---NGI 177 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEESSE---EEE
T ss_pred cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEeeCCccee---eee
Confidence 7654433322221 1 112233367999863 211 1122457889988653 4443 223222 122
Q ss_pred EEE-C-C----EEEEEcccCCCCcCCceEEEeCCCCe---EEE-cCCCCCCC-cce-EEEE-ECCEEEEEecCCCCCccc
Q psy17309 599 TTL-Q-G----KIYITGGFNGHNCLNSCEVYDPECNQ---WTL-IEPMRHRR-SGV-SCIA-YHECIYVIGGFNGMSRMC 665 (824)
Q Consensus 599 ~~~-~-~----~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r-~~~-~~~~-~~~~iyv~GG~~~~~~~~ 665 (824)
+.. + + .||+..- ....+++||...+. +.. ...++... ... +++. -+|.|||..-. .+
T Consensus 178 ~~~~d~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g 247 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SS 247 (314)
T ss_dssp EEEECTTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TT
T ss_pred EECCCCCcceeEEEEEee-----cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----CC
Confidence 222 2 2 5787642 23678888754331 211 12233222 122 2333 26889997532 25
Q ss_pred eEEEEeCCCCCEEECCCCCCCCcceEEEEEC---CEEEEEccCCCCceeeEEEEEEC
Q psy17309 666 NGEKYNPVTKTWSQVPDMYNPRSNFAIEVID---DMIFAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 666 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~---~~i~v~GG~~~~~~~~~v~~yd~ 719 (824)
.|.+|||++..-...-.+|.+ ..+.++++ +.|||....+ ..++.++.
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~-----g~i~~~~~ 297 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHEN-----NAVWKFEW 297 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTT-----TEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCC-----CcEEEEEC
Confidence 799999987653221122222 23344452 3688875432 26777764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=94.96 E-value=0.45 Score=45.37 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=106.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA 552 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 552 (824)
+.+..||..+.+-... . +.....++++.. +..+++.+. . ...+..+|..+++....-... .....++
T Consensus 54 ~~i~v~d~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 122 (301)
T d1l0qa2 54 NDVSIIDTATNNVIAT--V--PAGSSPQGVAVSPDGKQVYVTNM-A----SSTLSVIDTTSNTVAGTVKTG--KSPLGLA 122 (301)
T ss_dssp TEEEEEETTTTEEEEE--E--ECSSSEEEEEECTTSSEEEEEET-T----TTEEEEEETTTTEEEEEEECS--SSEEEEE
T ss_pred CEEEEEECCCCceeee--e--ecccccccccccccccccccccc-c----cceeeecccccceeeeecccc--ccceEEE
Confidence 4688999988765431 1 112223344444 344555443 2 245778888887654332222 2222333
Q ss_pred EE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 553 VH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 553 ~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
.. ++ .+++.+.. ...+..++..+.......+.. .....++.. ++.+|+.+.. ...+..++....
T Consensus 123 ~~~dg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 190 (301)
T d1l0qa2 123 LSPDGKKLYVTNNG-----DKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTN 190 (301)
T ss_dssp ECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTT
T ss_pred eecCCCeeeeeecc-----ccceeeeeccccceeeecccC--CCceEEEeeccccceeeeccc-----ccccccccccce
Confidence 32 44 44444432 245677888777654332211 111222222 3456665432 134556666666
Q ss_pred eEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-C-CEEEEEcc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-D-DMIFAIGG 704 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG 704 (824)
........+. ...+.+.. +..+|+.+... ..+.+.++|+.+.+-.. .++....-.+++.- + .+||+.++
T Consensus 191 ~~~~~~~~~~--~~~~~~~~~~g~~~~v~~~~~---~~~~v~v~D~~t~~~~~--~~~~~~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 191 SVIDTVKVEA--APSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITA--RIPVGPDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp EEEEEEECSS--EEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEE--EEECCSSEEEEEECTTSSEEEEEET
T ss_pred eeeecccccC--Ccceeeccccccccccccccc---eeeeeeeeecCCCeEEE--EEcCCCCEEEEEEeCCCCEEEEEEC
Confidence 5544332221 11222222 45566654321 13578999998765322 12222222333332 4 46888876
Q ss_pred CCCCceeeEEEEEECCCCcEE
Q psy17309 705 FNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.++ .|.+||+++.+-.
T Consensus 264 ~~~-----~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 264 FCN-----TVSVIDTATNTIT 279 (301)
T ss_dssp TTT-----EEEEEETTTTEEE
T ss_pred CCC-----eEEEEECCCCeEE
Confidence 543 6889999988543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.94 E-value=1.2 Score=42.15 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
++++++.|+.+ ..+..||..+.+...+........-.+++.. +++.++.|+.+ ..+..||..++.....
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFELAH 216 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTEESC
T ss_pred ccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccc
Confidence 56777788765 4688899887776554322222111222222 46666667653 4688999887665433
Q ss_pred -CCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 681 -PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 681 -~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
..+........++.+ ++++++.||.++ .+.+||..+....
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSDH 259 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTSC
T ss_pred cccccccccccccccccccccceEEEcCCC-----EEEEEECCCCCcc
Confidence 233222222222333 778888888765 5888998876543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.64 Score=45.57 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=106.7
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..++.|+.. ..+..||....+...........+ .....+.. ++.+++.|+.+ ..+..+|..+++-..
T Consensus 109 g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 109 GCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVR 177 (337)
T ss_dssp SSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCEEEEeecc-----cccccccccccccccccccccccc-cccccccccccccccccccc-----ccccccccccccccc
Confidence 3445666532 468888877665433211111111 11222222 55566666543 357888888776333
Q ss_pred eccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCc
Q psy17309 539 IAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNC 616 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~ 616 (824)
........ -.+++. .++..++.|+.+ ..+..||..+.+--..-..+ ..-.+++.. ++..++.|+.+
T Consensus 178 ~~~~~~~~-v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d---- 245 (337)
T d1gxra_ 178 QFQGHTDG-ASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES---- 245 (337)
T ss_dssp EECCCSSC-EEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETT----
T ss_pred cccccccc-ccccccccccccccccccc-----ccccccccccceeecccccc--cceEEEEEcccccccceeccc----
Confidence 22211111 122222 255666777643 56888888776522211111 111222222 55666666654
Q ss_pred CCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE
Q psy17309 617 LNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 617 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (824)
..+..||..+..-.....- ......+.+ +++.++.|+.+ ..+..||..+.+=... ..... ....+.
T Consensus 246 -~~i~i~d~~~~~~~~~~~~---~~~i~~v~~s~~g~~l~s~s~D-----g~i~iwd~~~~~~~~~--~~~~~-~v~~~~ 313 (337)
T d1gxra_ 246 -SNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQ--SKESS-SVLSCD 313 (337)
T ss_dssp -SCEEEEETTSSCEEEECCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE--EECSS-CEEEEE
T ss_pred -ccccccccccccccccccc---ccccceEEECCCCCEEEEEeCC-----CeEEEEECCCCCEEEE--ccCCC-CEEEEE
Confidence 4578888877654332211 111222333 66777777754 4678888776542211 11111 111222
Q ss_pred E--CCEEEEEccCCCCceeeEEEEEE
Q psy17309 695 I--DDMIFAIGGFNGVTTIYHVECYD 718 (824)
Q Consensus 695 ~--~~~i~v~GG~~~~~~~~~v~~yd 718 (824)
+ +++.++.||.++ .+.+||
T Consensus 314 ~s~d~~~l~t~s~D~-----~I~vWd 334 (337)
T d1gxra_ 314 ISVDDKYIVTGSGDK-----KATVYE 334 (337)
T ss_dssp ECTTSCEEEEEETTS-----CEEEEE
T ss_pred EeCCCCEEEEEeCCC-----eEEEEE
Confidence 3 677778887665 355555
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.68 E-value=1.9 Score=40.87 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=105.1
Q ss_pred eEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC----CCcceEEEEEEC--CEEEEE-ecccCCCCCCeE
Q psy17309 502 HGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN----FKRCYVSTAVHQ--DVIYAM-GGYNGQRRQNSV 573 (824)
Q Consensus 502 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~~--~~iyv~-GG~~~~~~~~~~ 573 (824)
.++++. ++.|||.-.. .+.+.+||+..+--...+... ........+..+ +..++. .+ ....+
T Consensus 26 ~gvavd~dg~i~VaD~~-----n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i 95 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQI 95 (279)
T ss_dssp EEEEECTTCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEE
T ss_pred cEEEEcCCCCEEEEECC-----CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC-----Ccccc
Confidence 345543 6789988532 367889998743222332221 112233344442 333332 22 12467
Q ss_pred EEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE
Q psy17309 574 EKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC 651 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~ 651 (824)
..+++....+.....-. ....+++++- ++.+|+.... ...+.+||+....-..............++.- ++.
T Consensus 96 ~~~~~~g~~~~~~~~~~-~~~p~~~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~ 169 (279)
T d1q7fa_ 96 QIYNQYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE 169 (279)
T ss_dssp EEECTTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred ccccccccceeecCCCc-ccccceeccccCCcEEEEeec-----cceeeEeccCCceeecccccccccccceeeecccee
Confidence 88888777666553211 1222233332 5788887543 24678898877654444332222222333333 578
Q ss_pred EEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
||+.... ...+++||+.......++.......-.++++ -+|.|||....+. ..+.+|+++-.
T Consensus 170 i~v~d~~-----~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~----~~v~~f~~~G~ 232 (279)
T d1q7fa_ 170 IFISDNR-----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQ 232 (279)
T ss_dssp EEEEEGG-----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSC
T ss_pred EEeeecc-----ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC----cEEEEECCCCC
Confidence 9998764 3678999998776666643211111223333 2678999854322 25788987643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.87 Score=44.55 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=96.1
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceE-EEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYV-STAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++..++.|+.+ ..+..||....+......+....... ..+.. ++.+++.|+.+ ..+..+|..+.+-..
T Consensus 108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVR 177 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCEEEEeecc-----cccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccc
Confidence 56667777754 46888998877665444433222222 22222 55666666633 457888888766333
Q ss_pred ecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCc
Q psy17309 586 IAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSR 663 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 663 (824)
....... .-.+++. .++..++.|+.+ ..+..||..+.+-...-..+. .-.+++.. ++..++.|+.+
T Consensus 178 ~~~~~~~-~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~d---- 245 (337)
T d1gxra_ 178 QFQGHTD-GASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES---- 245 (337)
T ss_dssp EECCCSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT----
T ss_pred ccccccc-cccccccccccccccccccc-----ccccccccccceeeccccccc--ceEEEEEcccccccceeccc----
Confidence 2111111 1112222 255666677654 467888887765322211111 11222222 56666777653
Q ss_pred cceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 664 MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
..+..||..+..-.....- ......+.+ +++.++.||.++ .+.+||..+.
T Consensus 246 -~~i~i~d~~~~~~~~~~~~---~~~i~~v~~s~~g~~l~s~s~Dg-----~i~iwd~~~~ 297 (337)
T d1gxra_ 246 -SNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKWFVSTGKDN-----LLNAWRTPYG 297 (337)
T ss_dssp -SCEEEEETTSSCEEEECCC---SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTC
T ss_pred -ccccccccccccccccccc---ccccceEEECCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 4678888877654332211 111122222 677788887654 5788887764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.38 E-value=2.1 Score=41.01 Aligned_cols=105 Identities=9% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
.+.+++.|+.+ ..+..||..+.+-... +........++.+ ++.+++.|+.+ ..+..||........
T Consensus 195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~~ 262 (340)
T d1tbga_ 195 DTRLFVSGACD-----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELM 262 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred ccceeEEeecC-----ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccccc
Confidence 45566666544 3577888877653221 1111222223333 56777777754 457788887765443
Q ss_pred CCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 680 VPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 680 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.-...........+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~ 303 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDALKAD 303 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSCEEEEEETTS-----CEEEEETTTCC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCC-----EEEEEECCCCc
Confidence 3222222222223333 677888888765 57889987643
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.68 Score=41.53 Aligned_cols=140 Identities=9% Similarity=0.101 Sum_probs=80.8
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEE----ee----cCCCcccCceEEEE---ECCEEEEEcccCCCCcCC
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS----LI----APMNVERSDASATT---LQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~----~~----~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~ 618 (824)
+++.++|.+|+|-| ..+|+++....... .+ +.+|.. --++. .++++|+|-| +
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~---IDAAf~~~~~~k~yfFkg-------~ 73 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG-------R 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET-------T
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC---ccEEEEECCCCEEEEEec-------C
Confidence 35678999999988 56788875443321 11 345432 23332 2678999876 3
Q ss_pred ceEEEeCCCCeE-EEcCC--CCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEE-----EC----CCCC
Q psy17309 619 SCEVYDPECNQW-TLIEP--MRHRRSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWS-----QV----PDMY 684 (824)
Q Consensus 619 ~v~~yd~~~~~W-~~~~~--~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~p 684 (824)
.+++|+-.+-.. ..+.. +|.......++. -++++|++-| +..++||..+++=. .+ +.+|
T Consensus 74 ~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~gvp 146 (195)
T d1itva_ 74 QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVP 146 (195)
T ss_dssp EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSC
T ss_pred EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCCCC
Confidence 567776332111 12222 333222222332 3689999988 57899998775311 11 2233
Q ss_pred CCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 685 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 685 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
. .-.++...++++|++-|. ..++||..+.
T Consensus 147 ~--~idaAf~~~~~~Yffkg~-------~y~r~~~~~~ 175 (195)
T d1itva_ 147 L--DTHDVFQFREKAYFCQDR-------FYWRVSSRSE 175 (195)
T ss_dssp S--SCSEEEEETTEEEEEETT-------EEEEEECCTT
T ss_pred C--CCcEEEEeCCcEEEEECC-------EEEEEcCCce
Confidence 2 234556678999999664 5688886553
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.18 E-value=0.85 Score=44.50 Aligned_cols=198 Identities=8% Similarity=0.021 Sum_probs=103.0
Q ss_pred CCEEEEEeecC--CCcccceEEEEECCCCceEEeccCCCC---cceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFK---RCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
++.+|+..... .......++++|+.++.+......... ..-++++.. ++.+|+..+. +.+.++|+.+
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~g 101 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTDG 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETTS
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCCC
Confidence 56777764321 112235699999999988765432211 112344443 3467776542 4588999988
Q ss_pred CcEEeecCCCcccC---ceEEEE-ECCEEEEEc--ccCC--------CCcCCceEEEeCCCCeEEEcC-CCCCCCcceEE
Q psy17309 581 NQWSLIAPMNVERS---DASATT-LQGKIYITG--GFNG--------HNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSC 645 (824)
Q Consensus 581 ~~W~~~~~~p~~r~---~~~~~~-~~~~lyv~G--G~~~--------~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~ 645 (824)
...+.+......+. -..+++ -+|.||+.. |... ......+++++++. +...+. .+..+ -+.
T Consensus 102 ~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---NGi 177 (314)
T d1pjxa_ 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---NGI 177 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---EEE
T ss_pred cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---eee
Confidence 77655443332221 122333 368999863 2110 12234688888754 344432 22222 122
Q ss_pred EE-EC-C----EEEEEecCCCCCccceEEEEeCCCCC---EEEC-CCCCCCCc-ce-EEEE-ECCEEEEEccCCCCceee
Q psy17309 646 IA-YH-E----CIYVIGGFNGMSRMCNGEKYNPVTKT---WSQV-PDMYNPRS-NF-AIEV-IDDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 646 ~~-~~-~----~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~-~~~p~~r~-~~-~~~~-~~~~i~v~GG~~~~~~~~ 712 (824)
+. -+ + .||+.... ...+++||...+. +.++ ..++.... .. ++++ -+|.|||..-.. .
T Consensus 178 ~~~~d~d~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~-----g 247 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----S 247 (314)
T ss_dssp EEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----T
T ss_pred EECCCCCcceeEEEEEeec-----ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC-----C
Confidence 22 22 2 58876532 3678888865432 2221 22222211 12 2222 378899874211 3
Q ss_pred EEEEEECCCCcEE
Q psy17309 713 HVECYDEKTDEWY 725 (824)
Q Consensus 713 ~v~~yd~~~~~W~ 725 (824)
.|.+|||++..-.
T Consensus 248 ~I~~~dp~~g~~~ 260 (314)
T d1pjxa_ 248 HIEVFGPDGGQPK 260 (314)
T ss_dssp EEEEECTTCBSCS
T ss_pred EEEEEeCCCCEEE
Confidence 7999999987643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=2.2 Score=41.97 Aligned_cols=223 Identities=13% Similarity=0.133 Sum_probs=104.9
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+..++.|+.. ..+..+|....+........ ...-.++... ++...+.|+.+ ..+..+|..+..-..
T Consensus 133 ~~~l~s~~~d-----g~v~i~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~ 199 (388)
T d1erja_ 133 GKFLATGAED-----RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSL 199 (388)
T ss_dssp SSEEEEEETT-----SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred CCcceecccc-----cccccccccccccccccccc---cccccccccccccccccccccc-----eeeeeeecccccccc
Confidence 3455666542 35778888887765522111 1111222222 44455555532 457888888765443
Q ss_pred eccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCc----ccCceEEEEE--CCEEEEEc
Q psy17309 539 IAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNV----ERSDASATTL--QGKIYITG 609 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~----~r~~~~~~~~--~~~lyv~G 609 (824)
....... ...++.. ++.+++.|+.+ ..+..||..+...... ..... .........+ ++..++.|
T Consensus 200 ~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 200 TLSIEDG--VTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp EEECSSC--EEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccc--cccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence 3322221 1222222 56777777754 4578888887765332 11111 1111122222 56666777
Q ss_pred ccCCCCcCCceEEEeCCCCeEEEcCCCCC----------CCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCE
Q psy17309 610 GFNGHNCLNSCEVYDPECNQWTLIEPMRH----------RRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTW 677 (824)
Q Consensus 610 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 677 (824)
+.+ ..+..||..+..-......+. ......++.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 273 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~ 342 (388)
T d1erja_ 273 SLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNP 342 (388)
T ss_dssp ETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCE
T ss_pred ECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcE
Confidence 654 356777776544322111110 0111122222 56777777754 4688999877653
Q ss_pred EECCCCCCCCcc-eEEEEE-------CCEEEEEccCCCCceeeEEEEEEC
Q psy17309 678 SQVPDMYNPRSN-FAIEVI-------DDMIFAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 678 ~~~~~~p~~r~~-~~~~~~-------~~~i~v~GG~~~~~~~~~v~~yd~ 719 (824)
... +...... .+++.. ++.+++.||.++ .|.+||.
T Consensus 343 ~~~--l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg-----~I~iW~~ 385 (388)
T d1erja_ 343 LLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDC-----KARIWKY 385 (388)
T ss_dssp EEE--EECCSSCEEEEEECSSCTTCTTCEEEEEEETTS-----EEEEEEE
T ss_pred EEE--EeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC-----EEEEEee
Confidence 221 1111111 112111 578888888765 4555553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.12 E-value=0.54 Score=45.54 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=53.3
Q ss_pred CceEEEEECCCCcEEE-cccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCc----
Q psy17309 474 TDFVETYDTRADRWVK-IDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKR---- 546 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r---- 546 (824)
.+.+.++|..+.+-.. ++.... ...-.++++. +..+|+.|+.+ ..+..||..+++....-..+.+.
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCC--CCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCCCccccc
Confidence 4678899999887543 222211 1112233333 45678877532 56999999998765433222211
Q ss_pred ceEEEEEE--CCEEEEEecccC------CCCCCeEEEEeCCCCcE
Q psy17309 547 CYVSTAVH--QDVIYAMGGYNG------QRRQNSVEKYNYTENQW 583 (824)
Q Consensus 547 ~~~~~~~~--~~~iyv~GG~~~------~~~~~~~~~yd~~t~~W 583 (824)
..+.++.. +..+|+.+.... ......+..+|..+.+=
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence 11122322 335555543210 11235677788777653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=1.1 Score=44.38 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=93.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.+++.|+.++ .+..+|..+.+......-..... .+++.. ++...+.|+. ...+..+|..+..-...
T Consensus 132 ~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~ 200 (388)
T d1erja_ 132 DGKFLATGAEDR-----LIRIWDIENRKIVMILQGHEQDI-YSLDYFPSGDKLVSGSG-----DRTVRIWDLRTGQCSLT 200 (388)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEE
T ss_pred CCCcceeccccc-----ccccccccccccccccccccccc-ccccccccccccccccc-----ceeeeeeeccccccccc
Confidence 566777777553 47888988876654332211111 122222 4455555553 24678888877654433
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc-CCC----CCCCcceEEEEE--CCEEEEEec
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI-EPM----RHRRSGVSCIAY--HECIYVIGG 657 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~----p~~r~~~~~~~~--~~~iyv~GG 657 (824)
...... ...++.. ++.+++.|+.+ ..+..||..+...... ... ........++.+ ++..++.|+
T Consensus 201 ~~~~~~--~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 201 LSIEDG--VTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp EECSSC--EEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccc--cccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 222221 1122222 56777777765 3578888887664332 111 111112222333 566777777
Q ss_pred CCCCCccceEEEEeCCCCCEEECCCCCC----------CCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYN----------PRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.+ ..+..||..+..-......+. .......+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 274 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-----~i~vwd~~~~~ 341 (388)
T d1erja_ 274 LD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-----GVLFWDKKSGN 341 (388)
T ss_dssp TT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-----EEEEEETTTCC
T ss_pred CC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCc
Confidence 54 467788876543322111110 0111122222 677788887665 68889988754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.90 E-value=4.7 Score=42.45 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=74.4
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--------CcceEEEEEECCEEEEEecccCCCCCCe
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--------KRCYVSTAVHQDVIYAMGGYNGQRRQNS 572 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 572 (824)
+=+++++.||+..+ ...++++|..|++ |+.-+..+. .......+..+++||+... -..
T Consensus 61 tPiv~~g~vyv~t~------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~g~ 128 (560)
T d1kv9a2 61 TPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGR 128 (560)
T ss_dssp CCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSE
T ss_pred CCEEECCEEEEECC------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC------CCE
Confidence 34677999998764 3679999999886 885433221 1222346667888888643 256
Q ss_pred EEEEeCCCCc--EEeecCCC--cccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 573 VEKYNYTENQ--WSLIAPMN--VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 573 ~~~yd~~t~~--W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
++.+|..+.+ |+....-+ ......+-.+.++.+++-+..........+..||.+|++ |+.-
T Consensus 129 l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 8889988864 76543222 122233445678887764333222334578999999885 7654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.39 E-value=1.7 Score=42.33 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=106.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++.||+..- ....++++||.++......... ...-++++.. +|.+|+..-. +......+..++..+......
T Consensus 50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~~-~~~p~gla~~~dG~l~va~~~-~~~~~~~i~~~~~~~~~~~~~ 122 (319)
T d2dg1a1 50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNLQDI 122 (319)
T ss_dssp TSCEEEEET-----TTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSCEEE
T ss_pred CCCEEEEEC-----CCCEEEEEECCCCeEEEEEeCC-CCCeeEEEECCCCCEEEEecC-CCccceeEEEEcCCCceeeee
Confidence 456887742 2357999999988654432111 1123444443 6789987421 122346788889888776554
Q ss_pred cC-CCcccCceEEE-EECCEEEEEcccC-CCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 587 AP-MNVERSDASAT-TLQGKIYITGGFN-GHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 587 ~~-~p~~r~~~~~~-~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
.. .........++ .-+|.+|+..-.. .......+++++++....+.+. .+..+ .+.+.- ++.||+.--.
T Consensus 123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~~-- 197 (319)
T d2dg1a1 123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTETT-- 197 (319)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEGG--
T ss_pred ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEeccc--
Confidence 32 22222222222 2378888753221 1123456889999887766553 22221 123322 3468887542
Q ss_pred CCccceEEEEeCCCCC---EE---ECCCCCCCCcce-EEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 661 MSRMCNGEKYNPVTKT---WS---QVPDMYNPRSNF-AIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~---W~---~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.+.+++||...+. +. ............ ++++ -+|.|||..-.+ ..|.+|||+-+.-..+
T Consensus 198 ---~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~-----g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 198 ---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQI 264 (319)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEE
T ss_pred ---CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC-----CEEEEECCCCcEEEEE
Confidence 4678899875431 11 111111111112 2333 378899984222 2689999976544444
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.99 E-value=0.54 Score=42.14 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEE---ee----cCCCcccCceEEEE------ECCEEEEEcccCCCCcCCceE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWS---LI----APMNVERSDASATT------LQGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~---~~----~~~p~~r~~~~~~~------~~~~lyv~GG~~~~~~~~~v~ 621 (824)
++++|+|-| +.+|+|+-.+.... .+ +.+|.. --++.. -++++|++-| +..+
T Consensus 59 ~~~~yfFkG-------~~yw~y~~~~~~~gyPk~i~~~~~glp~~--iDAA~~~~~~~~~~~~~yfFkg-------~~yw 122 (192)
T d1qhua1 59 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPFP--LDAAVECHRGECQDEGILFFQG-------NRKW 122 (192)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCSS--CCEEEEECBBTBSSSEEEEEET-------TEEE
T ss_pred CCcEEEEeC-------CEEEEEeCCccccCCCcChHHhCCCCCCC--ceEEEEccccccCCCeEEEEeC-------CeEE
Confidence 679999988 67899975543331 22 123322 122222 2789999977 4578
Q ss_pred EEeCCCCeEEEc--CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 622 VYDPECNQWTLI--EPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 622 ~yd~~~~~W~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
+||..+..=..- +.+| .. .+++..+|++|++-| +.-++||..+.+
T Consensus 123 ~yd~~~~~~~~~~w~gip--~~-daA~~~~g~~YfFkg-------~~y~r~~~~~~~ 169 (192)
T d1qhua1 123 FWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQG-------NQFLRFNPVSGE 169 (192)
T ss_dssp EEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEET-------TEEEEECTTTCC
T ss_pred EEeCCCCCcccccccCcC--Cc-ceeEEeCCcEEEEEC-------CEEEEEcCCcce
Confidence 899887641111 2223 22 345566999999988 578899887754
|
| >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.067 Score=36.92 Aligned_cols=42 Identities=14% Similarity=0.344 Sum_probs=34.8
Q ss_pred ecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHH
Q psy17309 271 HITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGI 312 (824)
Q Consensus 271 ~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i 312 (824)
.+..+.+-+|+.||++++|+.|.+.|++.+...+...+.-+|
T Consensus 9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eei 50 (55)
T d1fs1b1 9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 50 (55)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHH
Confidence 467788999999999999999999999999877665554443
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.69 Score=41.73 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=78.1
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEE---ee----cCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceE
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS---LI----APMNVERSDASATT-LQGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~---~~----~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~ 621 (824)
+++.++|.+|+|=| +.+|+++.....+. .+ +.+|.... .+... .++++|++-| +..+
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~Id-AA~~~~~~~~~yffkg-------~~~~ 81 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKID-AVYEAPQEEKAVFFAG-------NEYW 81 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCCS-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCCce-EEEEECCCCeEEEecC-------ceEE
Confidence 56678999999977 45666544433321 11 23443322 12212 3678999877 4567
Q ss_pred EEeCCCCeE---EEcCC--CCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCCE-----EEC----CCCC
Q psy17309 622 VYDPECNQW---TLIEP--MRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVTKTW-----SQV----PDMY 684 (824)
Q Consensus 622 ~yd~~~~~W---~~~~~--~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~----~~~p 684 (824)
+|+-.+-.. ..+.. +|......-+|.. ++++|++-| +..++||..+++= +.+ +.+|
T Consensus 82 ~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w~gvp 154 (200)
T d1gena_ 82 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAIP 154 (200)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSCC
T ss_pred EEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhccCCCC
Confidence 776432110 11211 2322222223332 689999998 5789999876541 111 2233
Q ss_pred CCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 685 NPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 685 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
. .--++... ++++|++=|. ..+.||..+.+
T Consensus 155 ~--~idAAf~~~~~g~~Yff~g~-------~y~r~d~~~~~ 186 (200)
T d1gena_ 155 D--NLDAVVDLQGGGHSYFFKGA-------YYLKLENQSLK 186 (200)
T ss_dssp S--SCSEEEECTTTCEEEEEETT-------EEEEEETTEEE
T ss_pred C--CccEEEEecCCCEEEEEECC-------EEEEEECCceE
Confidence 2 22334443 6899999663 67888876543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.66 E-value=0.59 Score=44.65 Aligned_cols=145 Identities=11% Similarity=0.143 Sum_probs=79.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI 633 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 633 (824)
++.+++.|+.+ ..+..||..+.+...+..+.....-.+++.. +++.++.|+.+ ..+..||..++.....
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFELAH 216 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTEESC
T ss_pred ccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccc
Confidence 56777777743 5688899888776554332222222223322 45666666654 3688999877655432
Q ss_pred -CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC-CCCCCCc-ceEEEEECCEEEEEccCCCC
Q psy17309 634 -EPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP-DMYNPRS-NFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 634 -~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~~~~i~v~GG~~~~ 708 (824)
..+........++.+ ++.+++.||.+ ..+.+||+.+.+...+. ....... -..++..++..++.||.++
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~- 290 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLD-----NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS- 290 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS-
T ss_pred cccccccccccccccccccccceEEEcCC-----CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC-
Confidence 233322222333333 67788888764 46888998775433221 1111111 1223334666777788665
Q ss_pred ceeeEEEEEEC
Q psy17309 709 TTIYHVECYDE 719 (824)
Q Consensus 709 ~~~~~v~~yd~ 719 (824)
.|.+||.
T Consensus 291 ----~i~iWdl 297 (299)
T d1nr0a2 291 ----NIKFWNV 297 (299)
T ss_dssp ----CEEEEEC
T ss_pred ----EEEEEec
Confidence 4666664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.63 E-value=4 Score=37.92 Aligned_cols=196 Identities=14% Similarity=0.024 Sum_probs=98.5
Q ss_pred eEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 502 HGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 502 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
+++++- ++.+||..... ...+..+++.+..=.... ....-.-+++++ .++.||+.... ...+.+++..
T Consensus 17 ~~vavd~dG~i~v~~~~~----~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~-----~~~i~~~~~~ 86 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGM----YGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFN-----NRVVTLAAGS 86 (260)
T ss_dssp EEEEECTTCCEEEEECSS----SCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETT-----TEEEEECTTC
T ss_pred CEEEEcCCCCEEEEEcCC----CCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeee-----eceeeeeeec
Confidence 344444 57888886532 234666666554322221 111111123333 36789987542 1234444445
Q ss_pred CCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC--CCCCCCcceEEEE-ECCEEEEE
Q psy17309 580 ENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIA-YHECIYVI 655 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~-~~~~iyv~ 655 (824)
+..+... ........++++ .++.||+..-. ...+..+++....-.... .+..++ +.+. -++++|+.
T Consensus 87 ~~~~~~~--~~~~~~p~~iavd~~g~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~ 156 (260)
T d1rwia_ 87 NNQTVLP--FDGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVT 156 (260)
T ss_dssp SCCEECC--CCSCCSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEE
T ss_pred cceeeee--eeeeeecccccccccceeEeeccc-----cccccccccccceeeeeeecccCCcc---eeeecCCCCEeee
Confidence 5544322 211122233443 26788886422 245677777665433322 222222 2332 26788887
Q ss_pred ecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
... ...+.+||++........... ...-.+++.- +|.||+..-.+ ..+..|++.....+...
T Consensus 157 ~~~-----~~~i~~~d~~~~~~~~~~~~~-~~~p~gi~~d~~g~l~vsd~~~-----~~i~~~~~~~~~~~~~~ 219 (260)
T d1rwia_ 157 DTD-----NNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLP 219 (260)
T ss_dssp EGG-----GTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTT-----TEEEEECTTCSCCEECC
T ss_pred ccc-----cccccccccccceeeeeeccc-cCCCccceeeeeeeeeeeecCC-----CEEEEEeCCCCeEEEEc
Confidence 643 257899999877655553211 1222344332 67898875322 36888999887766653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.36 E-value=2.1 Score=40.97 Aligned_cols=134 Identities=14% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
.+.+++.|+.+ ..+..||..+.+-.. .+........++.+ ++.+++.|+.+ ..+..||........
T Consensus 195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~--~~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~~ 262 (340)
T d1tbga_ 195 DTRLFVSGACD-----ASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELM 262 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred ccceeEEeecC-----ceEEEEECCCCcEEE--EEeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccccc
Confidence 34555555532 467888887765322 11111122222222 56677777755 357788888776544
Q ss_pred cCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 633 IEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
.-...........+.+ ++++++.|+.+ ..+.+||..+.+- +..+.........+.+ ++++++.||.++
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSCEEEEEETT-----SCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccCceEEEEECCCCCEEEEEECC-----CEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEccCC
Confidence 3333333333333333 56777777754 4688899876543 2222211111222223 667778888765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=91.97 E-value=0.83 Score=44.28 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=75.1
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
+..+++++. .+.+..||..+.+-.. ....+....-.+++.. +..+|+.+..+ +.+..||..+.+=.
T Consensus 8 ~~~l~~~~~-----~~~v~v~D~~t~~~~~--t~~~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 8 HEYMIVTNY-----PNNLHVVDVASDTVYK--SCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNT 75 (346)
T ss_dssp CEEEEEEET-----TTEEEEEETTTTEEEE--EEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred CcEEEEEcC-----CCEEEEEECCCCCEEE--EEEcCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeee
Confidence 344555543 3579999999997643 1122222222345544 45677776532 56899999887543
Q ss_pred EeccCCCCcc-----eEEEEEE--CCEEEEEecccC------CCCCCeEEEEeCCCCcEEe-ecCCCcccCceEEE-EEC
Q psy17309 538 EIAPMNFKRC-----YVSTAVH--QDVIYAMGGYNG------QRRQNSVEKYNYTENQWSL-IAPMNVERSDASAT-TLQ 602 (824)
Q Consensus 538 ~~~~~~~~r~-----~~~~~~~--~~~iyv~GG~~~------~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~-~~~ 602 (824)
.......... -..++.. +..+|+.+.... ......+..+|..+.+-.. +...+.+.....+. .-+
T Consensus 76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T d1jmxb_ 76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155 (346)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence 2222221111 1122222 346777654221 1113456667766654211 11111222222222 236
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
+++|+.++ .+..+|..+.+...
T Consensus 156 ~~~~~~~~--------~~~~~~~~~~~~~~ 177 (346)
T d1jmxb_ 156 GSLYVAGP--------DIYKMDVKTGKYTV 177 (346)
T ss_dssp SCEEEESS--------SEEEECTTTCCEEE
T ss_pred CEEEEeCC--------cceEEEccCCCEEE
Confidence 67777653 45667766665544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=5.2 Score=37.69 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred EEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 505 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
...++..++.|+.+ ..+..||..+.+-...... ..........++.+++.|+.+ ..+..||..+.+-.
T Consensus 183 ~~~~~~~l~s~~~d-----g~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 250 (342)
T d2ovrb2 183 LQFDGIHVVSGSLD-----TSIRVWDVETGNCIHTLTG--HQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCL 250 (342)
T ss_dssp EEECSSEEEEEETT-----SCEEEEETTTCCEEEEECC--CCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEE
T ss_pred ccCCCCEEEEEeCC-----CeEEEeecccceeeeEecc--cccceeEEecCCCEEEEEcCC-----CEEEEEeccccccc
Confidence 34466677777755 3588899887664322221 111122333445566666643 45888998876643
Q ss_pred e-ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEE-EcCCCCCC--CcceEEEE-E-CCEEEEEecC
Q psy17309 585 L-IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWT-LIEPMRHR--RSGVSCIA-Y-HECIYVIGGF 658 (824)
Q Consensus 585 ~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~--r~~~~~~~-~-~~~iyv~GG~ 658 (824)
. +...........+...++.+++.||.+ ..+..||..+++-. .+.....+ .....++. . ++.+++.|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~ 325 (342)
T d2ovrb2 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325 (342)
T ss_dssp EEECSTTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred ccccccceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 3 333333333444455677777888765 36889999887643 22222211 11122222 2 4455566655
Q ss_pred CCCCccceEEEEeCCC
Q psy17309 659 NGMSRMCNGEKYNPVT 674 (824)
Q Consensus 659 ~~~~~~~~v~~yd~~~ 674 (824)
++.. ...++++|...
T Consensus 326 dGt~-~~~l~~~Df~~ 340 (342)
T d2ovrb2 326 NGTE-ETKLLVLDFDV 340 (342)
T ss_dssp SSSS-CCEEEEEECCC
T ss_pred CCCC-eeEEEEEeCCC
Confidence 4432 34577777654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.78 E-value=5.3 Score=37.46 Aligned_cols=209 Identities=10% Similarity=0.051 Sum_probs=107.4
Q ss_pred ceEEEEECCCCcEEEcccCCCC--CCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPM--GPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 550 (824)
+.|..||+..+--..++....+ ........+.. .+..++..- .....+..+++....+........ ...+.
T Consensus 44 ~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~-~~p~~ 118 (279)
T d1q7fa_ 44 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER----SPTHQIQIYNQYGQFVRKFGATIL-QHPRG 118 (279)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC----GGGCEEEEECTTSCEEEEECTTTC-SCEEE
T ss_pred CEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceecc----CCccccccccccccceeecCCCcc-cccce
Confidence 5678888765422222221111 12233444444 233333221 122467788877666665543221 22233
Q ss_pred EEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 551 TAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+++. ++.+|+.... ...+.+|++..+.-..............+++- ++.+|+..... ..+.+||+...
T Consensus 119 ~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~-----~~V~~~d~~G~ 188 (279)
T d1q7fa_ 119 VTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA-----HCVKVFNYEGQ 188 (279)
T ss_dssp EEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG-----TEEEEEETTCC
T ss_pred eccccCCcEEEEeec-----cceeeEeccCCceeecccccccccccceeeeccceeEEeeeccc-----cceeeeecCCc
Confidence 3333 5788887552 35788899887655544333322333333333 67899986543 57899999877
Q ss_pred eEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCC-EEECCCCCCCCcceEEEEE-CCEEEEEc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKT-WSQVPDMYNPRSNFAIEVI-DDMIFAIG 703 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~i~v~G 703 (824)
....+..-.....-.+.++- +|.|||....+. ..|.+|+++-.- ++-...... ...+++++- ++.|||..
T Consensus 189 ~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~----~~v~~f~~~G~~~~~~~~~~~~-~~p~~vav~~dG~l~V~~ 261 (279)
T d1q7fa_ 189 YLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESKVKH-AQCFDVALMDDGSVVLAS 261 (279)
T ss_dssp EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESSCC-SCEEEEEEETTTEEEEEE
T ss_pred eeeeecccccccCCcccccccCCeEEEEECCCC----cEEEEECCCCCEEEEEeCCCCC-CCEeEEEEeCCCcEEEEe
Confidence 66666432111122233332 678999864321 358889875431 111111111 122444443 77888874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=5.8 Score=37.59 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=113.5
Q ss_pred EEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEecc
Q psy17309 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP 541 (824)
Q Consensus 462 l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 541 (824)
+++.|+. -..+..||..+.+-...-.. ....-.+++...+..++.||.+ ..+..++....+-.....
T Consensus 25 ~l~tgs~-----Dg~i~vWd~~~~~~~~~l~~---H~~~V~~l~~s~~~~l~s~s~D-----~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 25 YVITGAD-----DKMIRVYDSINKKFLLQLSG---HDGGVWALKYAHGGILVSGSTD-----RTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp EEEEEET-----TTEEEEEETTTTEEEEEEEC---CSSCEEEEEEETTTEEEEEETT-----CCEEEEETTTTEEEEEEC
T ss_pred EEEEEeC-----CCeEEEEECCCCcEEEEEEC---CCCCEEEEEEcCCCEEEEEecc-----cccccccccccccccccc
Confidence 4555553 24688899888765431011 1112234444555567777755 347788887766443332
Q ss_pred CCCC-cceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec----------CCCccc-----------CceEE
Q psy17309 542 MNFK-RCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA----------PMNVER-----------SDASA 598 (824)
Q Consensus 542 ~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~----------~~p~~r-----------~~~~~ 598 (824)
.... ......+.. ++...+.|+.+ ..+..||..+..-.... ..+... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (355)
T d1nexb2 92 GHNSTVRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166 (355)
T ss_dssp CCSSCEEEEEEEEETTEEEEEEEETT-----SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred cccccccccccccccccceeeeecCC-----CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence 2222 222222333 44555556543 45666776554321100 000000 01111
Q ss_pred EEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 599 TTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 599 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
...++.+.+.|+.+ ..+..||..+.+...................++..++.|+.+ ..+..||..+..-.
T Consensus 167 ~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~ 236 (355)
T d1nexb2 167 VSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELM 236 (355)
T ss_dssp EEEETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCEE
T ss_pred cccccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeeccccc-----ceEEeeeccccccc
Confidence 22244555555543 467788888776544433222222222233356666677654 45788888776543
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.. +........++..+++.++.|+.++ .+.+||..+..
T Consensus 237 ~~--~~~h~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 274 (355)
T d1nexb2 237 YT--LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYS 274 (355)
T ss_dssp EE--ECCCSSCCCEEEECSSEEEEECTTS-----EEEEEETTTCC
T ss_pred cc--cccccccccccccccceeeeeeccc-----ccccccccccc
Confidence 32 1111122334566778888888765 57888887654
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=1.3 Score=39.71 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=79.5
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceE---Eec----cCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK---EIA----PMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 574 (824)
+++.+++.+|+|=| +.+|+++.....+. .+. .+|.. -.++... .++++|++-| +..|
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~-IdAA~~~~~~~~~yffkg-------~~~~ 81 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAG-------NEYW 81 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSC-CSEEEEETTTTEEEEEET-------TEEE
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCC-ceEEEEECCCCeEEEecC-------ceEE
Confidence 66677999999987 44565543332221 121 22322 1222222 3678999988 6788
Q ss_pred EEeCCCCcE---EeecC--CCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEE-----Ec----CCCC
Q psy17309 575 KYNYTENQW---SLIAP--MNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWT-----LI----EPMR 637 (824)
Q Consensus 575 ~yd~~t~~W---~~~~~--~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~p 637 (824)
+|+-.+... +.+.. +|......-+|.. ++++|+|-| +..++||..+++=. .+ +.+|
T Consensus 82 ~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w~gvp 154 (200)
T d1gena_ 82 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAIP 154 (200)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSCC
T ss_pred EEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhccCCCC
Confidence 887432111 11211 2322223334443 689999987 56789998876521 12 1233
Q ss_pred CCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 638 HRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 638 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
. .-.++... ++++|++-| +..++||..+.+
T Consensus 155 ~--~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~ 186 (200)
T d1gena_ 155 D--NLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 186 (200)
T ss_dssp S--SCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred C--CccEEEEecCCCEEEEEEC-------CEEEEEECCceE
Confidence 2 22234333 689999988 467888865543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.07 E-value=4.7 Score=37.45 Aligned_cols=225 Identities=4% Similarity=-0.032 Sum_probs=99.4
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
.+++.|+.+ ..+..||..+.+.... ... ....-.+++.. ++.+++.++.. ..+..++.........
T Consensus 30 ~~l~s~s~D-----g~i~iWd~~~~~~~~~--~~~-h~~~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 96 (317)
T d1vyhc1 30 SVMVSASED-----ATIKVWDYETGDFERT--LKG-HTDSVQDISFDHSGKLLASCSAD-----MTIKLWDFQGFECIRT 96 (317)
T ss_dssp SEEEEEESS-----SCEEEEETTTCCCCEE--ECC-CSSCEEEEEECTTSSEEEEEETT-----SCCCEEETTSSCEEEC
T ss_pred CEEEEEeCC-----CeEEEEECCCCCEEEE--EeC-CCCcEEEEeeecccccccccccc-----cccccccccccccccc
Confidence 455556532 3577888877654321 100 01111222222 44445554432 2234455555444332
Q ss_pred ccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcC
Q psy17309 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCL 617 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 617 (824)
...............++...+.++.+ ..+..+|..+......- .........+.. ++.+++.|+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~---- 165 (317)
T d1vyhc1 97 MHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ---- 165 (317)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred cccccccceeeeccCCCceEEeeccC-----cceeEeecccceeeeEE--ccCCCcceeeecccCCCEEEEEeCCC----
Confidence 22211111111222245555555533 45777888877653321 111122222222 566677776543
Q ss_pred CceEEEeCCCCeEEEc-CC----------CCCC---------CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCE
Q psy17309 618 NSCEVYDPECNQWTLI-EP----------MRHR---------RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTW 677 (824)
Q Consensus 618 ~~v~~yd~~~~~W~~~-~~----------~p~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 677 (824)
.+..+|..+...... .. .|.. ..........+.+++.|+.+ ..+..||..+.+.
T Consensus 166 -~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~ 239 (317)
T d1vyhc1 166 -TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMC 239 (317)
T ss_dssp -CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEE
T ss_pred -eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC-----CEEEEEECCCCcE
Confidence 455666655443221 00 0000 00111122234555566543 4677888877653
Q ss_pred EECCCCCCCCcce-EEEE-ECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 678 SQVPDMYNPRSNF-AIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 678 ~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
... +....... +++. -++++++.||.++ .+.+||..+.
T Consensus 240 ~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 279 (317)
T d1vyhc1 240 LMT--LVGHDNWVRGVLFHSGGKFILSCADDK-----TLRVWDYKNK 279 (317)
T ss_dssp EEE--EECCSSCEEEEEECSSSSCEEEEETTT-----EEEEECCTTS
T ss_pred EEE--EeCCCCCEEEEEECCCCCEEEEEECCC-----eEEEEECCCC
Confidence 221 11111111 2222 2677788887665 6888988764
|
| >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.14 Score=37.28 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=33.7
Q ss_pred ecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHH
Q psy17309 271 HITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCF 310 (824)
Q Consensus 271 ~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~ 310 (824)
.+..+++.+|+.||++|+++.|.+.|++.+...+...+.-
T Consensus 10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~e 49 (70)
T d1nexa1 10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPE 49 (70)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHH
T ss_pred hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHH
Confidence 4677889999999999999999999999997776554443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=90.44 E-value=1.4 Score=42.53 Aligned_cols=154 Identities=13% Similarity=0.071 Sum_probs=78.3
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
+++.+++|+.+ +.+..||+.+++-...-.++....-.+++.. +| .+|+.+..+ +.+..||+.+.+=..
T Consensus 7 ~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~~ 76 (346)
T d1jmxb_ 7 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTF 76 (346)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred CCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeeee
Confidence 46677777644 5799999999975443344433333344443 44 677776532 678999998875332
Q ss_pred ecCCCcc-----cCceEEEEE--CCEEEEEcccCCC------CcCCceEEEeCCCCeEEEc-CCCCCCCc-ceEEEEECC
Q psy17309 586 IAPMNVE-----RSDASATTL--QGKIYITGGFNGH------NCLNSCEVYDPECNQWTLI-EPMRHRRS-GVSCIAYHE 650 (824)
Q Consensus 586 ~~~~p~~-----r~~~~~~~~--~~~lyv~GG~~~~------~~~~~v~~yd~~~~~W~~~-~~~p~~r~-~~~~~~~~~ 650 (824)
..+.+.. .....++.. +..+|+.+..... .....+..+|..+.+-... ...+.+.. ......-++
T Consensus 77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T d1jmxb_ 77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156 (346)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence 2111111 122233333 3467776542211 1123456676665432111 11111111 122233367
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
++|+.++ .+..+|..+.+...
T Consensus 157 ~~~~~~~--------~~~~~~~~~~~~~~ 177 (346)
T d1jmxb_ 157 SLYVAGP--------DIYKMDVKTGKYTV 177 (346)
T ss_dssp CEEEESS--------SEEEECTTTCCEEE
T ss_pred EEEEeCC--------cceEEEccCCCEEE
Confidence 7777654 45667776665543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=4.6 Score=37.07 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=92.7
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++..++.|+.++ .+..||..+.+-.. .+.........+..++.+++.||.+ ..+..++..++......
T Consensus 24 d~~~l~sgs~Dg-----~i~vWd~~~~~~~~--~l~~H~~~V~~v~~~~~~l~s~s~D-----~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 24 DDQKIVSGLRDN-----TIKIWDKNTLECKR--ILTGHTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLNTL 91 (293)
T ss_dssp CSSEEEEEESSS-----CEEEEESSSCCEEE--EECCCSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEEEEE
T ss_pred cCCEEEEEeCCC-----eEEEEECCCCcEEE--EEecCCCCEeeeecccceeeccccc-----ccccccccccccccccc
Confidence 566677887653 47888988765432 2222222223344577777888754 45778888887765443
Q ss_pred CCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccc
Q psy17309 588 PMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMC 665 (824)
Q Consensus 588 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 665 (824)
...... ........+.+.. ++.. ..+..+|..+.. ......+............ ...++..++ + .
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-d-----~ 158 (293)
T d1p22a2 92 IHHCEA-VLHLRFNNGMMVT-CSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG-D-----R 158 (293)
T ss_dssp CCCCSC-EEEEECCTTEEEE-EETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET-T-----S
T ss_pred cccccc-cccccccccceee-cccc-----cceeEeeccccccccccccccccccccccceecccccccccC-C-----C
Confidence 222111 1112222333333 3322 345566655433 1111111122222222333 444444333 2 4
Q ss_pred eEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 666 NGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 666 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.+..+|..+.+-... +............++..++.|+.++ .+.+||+.+.+-..
T Consensus 159 ~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 159 TIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLR 212 (293)
T ss_dssp EEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred ceeeecCCCCcEEEE--EcccccccccccCCCCeEEEecCCC-----EEEEEecccceeee
Confidence 678888877653221 1111222233444566677777665 47788888765544
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.05 E-value=5.9 Score=36.69 Aligned_cols=92 Identities=7% Similarity=0.056 Sum_probs=46.2
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
.+.+++.|+.+ ..+..||..+.+.... +.........+.+ ++++++.||.+ ..+.+||..+.+ .
T Consensus 216 ~~~~~~~~~~d-----~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~--~ 281 (317)
T d1vyhc1 216 PGPFLLSGSRD-----KTIKMWDVSTGMCLMT--LVGHDNWVRGVLFHSGGKFILSCADD-----KTLRVWDYKNKR--C 281 (317)
T ss_dssp -CCEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSCEEEEETT-----TEEEEECCTTSC--C
T ss_pred CCceeEeccCC-----CEEEEEECCCCcEEEE--EeCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEECCCCc--E
Confidence 34455555544 3577888887764321 1111111222222 56777777754 468889887643 1
Q ss_pred CCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 680 VPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 680 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
+..+.........+.+ ++++++.||.++
T Consensus 282 ~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg 311 (317)
T d1vyhc1 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311 (317)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 1111111111222333 567778888765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=88.54 E-value=10 Score=35.75 Aligned_cols=211 Identities=9% Similarity=-0.067 Sum_probs=111.1
Q ss_pred EEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCC
Q psy17309 503 GTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTE 580 (824)
Q Consensus 503 ~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t 580 (824)
++++. ++.||+.... ...++++|+... ...+...+. .-.+++.- ++.+|+.+-..+ .-.....+...
T Consensus 32 ~iAv~pdG~l~vt~~~-----~~~I~~i~p~g~-~~~~~~~~~--~~~gla~~~dG~l~v~~~~~~---~~~~~~~~~~~ 100 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHE-----VGEIVSITPDGN-QQIHATVEG--KVSGLAFTSNGDLVATGWNAD---SIPVVSLVKSD 100 (302)
T ss_dssp EEEECTTSCEEEEETT-----TTEEEEECTTCC-EEEEEECSS--EEEEEEECTTSCEEEEEECTT---SCEEEEEECTT
T ss_pred CEEECCCCCEEEEeCC-----CCEEEEEeCCCC-EEEEEcCCC--CcceEEEcCCCCeEEEecCCc---eEEEEEecccc
Confidence 34444 6788887643 257999998865 444444432 12233332 678888863221 12233344445
Q ss_pred CcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc---CC-----CCCCC-cceEEEEECC
Q psy17309 581 NQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI---EP-----MRHRR-SGVSCIAYHE 650 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~-----~p~~r-~~~~~~~~~~ 650 (824)
.+-+.+...+........+.. ++.+|+.-.. ...++.+|+.+..=... .. ..... ..-+....++
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN 175 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred cceeeccccCCccccceeEEccCCCEEeeccc-----cccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence 555666666655554455443 7788876322 35678888887652221 10 11111 1223344578
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEEECC----CCCCCCcceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP----DMYNPRSNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.+|+.... ...+++++.....-.... ....+ .+++. -+|.||+....+ +.|.+++|+.+.-.
T Consensus 176 ~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~p---dgia~d~dG~l~va~~~~-----~~V~~i~p~G~~~~ 242 (302)
T d2p4oa1 176 FLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHIY-----NSVVRIAPDRSTTI 242 (302)
T ss_dssp EEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBTT-----CCEEEECTTCCEEE
T ss_pred ceeeecCC-----CCeEEeccccccccccccccccCCCCC---cceEECCCCCEEEEEcCC-----CcEEEECCCCCEEE
Confidence 88887653 357888887654311111 01111 12333 377899886433 26899999876443
Q ss_pred eccCCCCCccceeEEEEc
Q psy17309 726 EATDMNIYRSALSACVIM 743 (824)
Q Consensus 726 ~~~~~p~~r~~~~~~~~~ 743 (824)
.. ..+.+-....++.++
T Consensus 243 ~~-~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 243 IA-QAEQGVIGSTAVAFG 259 (302)
T ss_dssp EE-CGGGTCTTEEEEEEC
T ss_pred EE-ecCCCCCCceEEEEc
Confidence 33 223333344555653
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.35 E-value=2 Score=38.11 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=65.3
Q ss_pred hcccCCCCCCCCCCCCcCCCcEEEEEccCCCCCCCcceEEEECCCCcEE---eeccCCCCCCcCeEEEEEE------CCE
Q psy17309 26 IAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWV---KIDQVDPMGPRAYHGTAVI------GYN 96 (824)
Q Consensus 26 ~~~~~~~~~~~~~~~~r~~~~~i~~~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~~~p~~R~~h~~~~~------~~~ 96 (824)
|......+|.+.-+.-+..++.+|+|-| +.+|+|+-.+.... .+...-+-.|..-.++... +++
T Consensus 40 Is~~Wpglp~~IDAaf~~~~~~~yfFkG-------~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~ 112 (192)
T d1qhua1 40 ISERWKNFIGPVDAAFRHGHTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEG 112 (192)
T ss_dssp HHHHSTTCCSCCSEEEEETTTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSE
T ss_pred HhhhcCCCCCCccEEEEcCCCcEEEEeC-------CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCe
Confidence 3344444544322222233457888887 34788876544432 2222111122222344432 679
Q ss_pred EEEEccCCCCcccceEEEEEccCCc-----eeEecccCCCcceeEEEEECCEEEEEcCcCCCCCCCcEEEEECCCCe
Q psy17309 97 IYVIGGFDGNEYYNSCRCFNAVTKV-----WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 168 (824)
Q Consensus 97 ~yv~GG~~~~~~~~~~~~~~~~~~~-----W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 168 (824)
+|+|-| +..|+||..+.+ |..+ |+. .++...++++|+|-| +..++||..+.+
T Consensus 113 ~yfFkg-------~~yw~yd~~~~~~~~~~w~gi-----p~~-daA~~~~g~~YfFkg-------~~y~r~~~~~~~ 169 (192)
T d1qhua1 113 ILFFQG-------NRKWFWDLTTGTKKERSWPAV-----GNC-TSALRWLGRYYCFQG-------NQFLRFNPVSGE 169 (192)
T ss_dssp EEEEET-------TEEEEEETTTTEEEEECCTTS-----CCC-SEEEEETTEEEEEET-------TEEEEECTTTCC
T ss_pred EEEEeC-------CeEEEEeCCCCCcccccccCc-----CCc-ceeEEeCCcEEEEEC-------CEEEEEcCCcce
Confidence 999988 568999988764 4333 222 345556899999988 688999988865
|
| >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Endo-alpha-sialidase domain: Endo-alpha-sialidase species: Bacteriophage K1F [TaxId: 344021]
Probab=88.20 E-value=8.9 Score=35.26 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=95.8
Q ss_pred CceE--EeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEE--Ee-----CCCCcEEeecCCCcc-cCceEEEEECC
Q psy17309 534 KVWK--EIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK--YN-----YTENQWSLIAPMNVE-RSDASATTLQG 603 (824)
Q Consensus 534 ~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--yd-----~~t~~W~~~~~~p~~-r~~~~~~~~~~ 603 (824)
.-|+ .++..|.--.-|+.+++++.-+.+|=.+++-....+-+ |. |..-.=+.++.--.+ -+-.++-.++|
T Consensus 266 spw~~t~l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~~fvrr~i~~~y~~nasepcvk~y~g 345 (516)
T d1v0ea1 266 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDG 345 (516)
T ss_dssp SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETT
T ss_pred CCceeccccccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccCCccceeeeccchhhcCCCCCchhhhcCC
Confidence 3465 45666666677999999998888886655443333322 21 111122333322222 23344556799
Q ss_pred EEEEEc-ccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEECCEEEEEecCCCC------C--------ccce-
Q psy17309 604 KIYITG-GFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAYHECIYVIGGFNGM------S--------RMCN- 666 (824)
Q Consensus 604 ~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~------~--------~~~~- 666 (824)
.||+.- |.-+...-.++.+-.-....|..+. |-.........+-+++.||+||..... . ....
T Consensus 346 vlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp~nvhhsnlpfakvgd~l~ifgsera~~ewe~gapd~ry~~syprtf 425 (516)
T d1v0ea1 346 VLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTF 425 (516)
T ss_dssp EEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEE
T ss_pred EEEEEeccccCCCCCccceeccccccChhhccCCccccccCCChhhcCCeEEEecccccccccccCCCccccccCCCceE
Confidence 999874 3333333345555544456798885 323334555678899999999963211 1 0111
Q ss_pred EEE-----EeCCCCCEEECCC-------CCCCCcceEEEEECCEE-EEEccCCC
Q psy17309 667 GEK-----YNPVTKTWSQVPD-------MYNPRSNFAIEVIDDMI-FAIGGFNG 707 (824)
Q Consensus 667 v~~-----yd~~~~~W~~~~~-------~p~~r~~~~~~~~~~~i-~v~GG~~~ 707 (824)
.-+ ++++.-+|..+.+ ...+..-.++|+-++.| |++||.+-
T Consensus 426 ~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged~ 479 (516)
T d1v0ea1 426 YARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDH 479 (516)
T ss_dssp EEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECCS
T ss_pred EEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCccc
Confidence 112 2334456766532 22334444566668876 67899753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=87.79 E-value=6.4 Score=39.74 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=93.1
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
..+..+|..+++-... ++....-|+++.- +| .+|+ ++.+ ..+.++|..+.+-+.+..++........+..
T Consensus 42 g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~l~~-~s~d-----g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 42 GQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFV-IGRD-----GKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEE-EETT-----SEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred CEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCEEEE-EcCC-----CCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 5688889888765432 2233344555443 44 5555 4432 4688999888765444444433333333321
Q ss_pred -----CC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC-----------CCCCcceEEEEECCE-EEEEecCCCCCc
Q psy17309 602 -----QG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-----------RHRRSGVSCIAYHEC-IYVIGGFNGMSR 663 (824)
Q Consensus 602 -----~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~-iyv~GG~~~~~~ 663 (824)
+| .||+.+..+ ..+..||.++.+-....+. +.++....++..++. +++....
T Consensus 114 ~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----- 183 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----- 183 (432)
T ss_dssp CSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred cccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----
Confidence 34 577766543 5688899988876543211 222322222223444 4444332
Q ss_pred cceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 664 MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
...+..+|..+.+-..+..++....-+.++.. +++.++++..+ .+.+.+.|.++.+..
T Consensus 184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~----~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA----RNKLVVIDTKEGKLV 242 (432)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG----GTEEEEEETTTTEEE
T ss_pred CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc----cceEEEeecccceEE
Confidence 35678888776554444334444444444333 45544443322 225666776665543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.77 E-value=1.9 Score=41.75 Aligned_cols=154 Identities=8% Similarity=-0.088 Sum_probs=84.4
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE 634 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 634 (824)
+|+++++++. .+++++|..++...+++. ..+....+..-+|+..+++|.+.. ..+.+||.+++.-..+.
T Consensus 14 dG~~~a~~~~------g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~ 82 (360)
T d1k32a3 14 DGDLIAFVSR------GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFE 82 (360)
T ss_dssp GGGCEEEEET------TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECC
T ss_pred CCCEEEEEEC------CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEee
Confidence 4555555442 468888888888777632 222222122227776666654331 35889999998877664
Q ss_pred CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCC-----C
Q psy17309 635 PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG-----V 708 (824)
Q Consensus 635 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~-----~ 708 (824)
.-+. .-.+.+.. +++.+++++.+ ..+..++..+.+...+...........+..-+++.+++++... .
T Consensus 83 ~~~~--~v~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~ 155 (360)
T d1k32a3 83 ENLG--NVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155 (360)
T ss_dssp CCCC--SEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred CCCc--eEEeeeecccccccceeccc-----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence 3222 12222222 66666666643 5688899888775554322222222222233666666544322 1
Q ss_pred ceeeEEEEEECCCCcEEe
Q psy17309 709 TTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 709 ~~~~~v~~yd~~~~~W~~ 726 (824)
.....+.+||..+++=..
T Consensus 156 ~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 156 YVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp CCEEEEEEEETTTTEEEE
T ss_pred ccccceeeeccccCceee
Confidence 234467889988865433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.05 E-value=13 Score=35.24 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=73.5
Q ss_pred CEEEEEecccCCCCCCeEEEEeCCCCcEEe-ecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSL-IAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
..+++.||.+ ..+..||..+.+-.. ............++.+ .+.+++.||.+ ..+..||..+++-.
T Consensus 172 ~~~~~~~~~d-----~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d-----~~i~iwd~~~~~~~ 241 (325)
T d1pgua1 172 PMRSMTVGDD-----GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEFL 241 (325)
T ss_dssp SCEEEEEETT-----TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCEE
T ss_pred cceEEEeecc-----cccccccccccccceecccccCCCCccEEeeeccccceeccccccc-----cceeeeeecccccc
Confidence 3456666643 457778876544322 2222222222222223 35777778765 35888998877643
Q ss_pred E-cCCCCCCC--cceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEEC---CCCCCCCcceEEEEECCEEEEEccC
Q psy17309 632 L-IEPMRHRR--SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV---PDMYNPRSNFAIEVIDDMIFAIGGF 705 (824)
Q Consensus 632 ~-~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~ 705 (824)
. +..-..+. ..++....+++.++.|+.+ ..+.+||+.+++-... ..-.......++...++..++.||.
T Consensus 242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 316 (325)
T d1pgua1 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316 (325)
T ss_dssp EECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred ccccccccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC
Confidence 2 22111111 2223333477778888764 4688899987753221 1111111122233334445567776
Q ss_pred CCCceeeEEEEEEC
Q psy17309 706 NGVTTIYHVECYDE 719 (824)
Q Consensus 706 ~~~~~~~~v~~yd~ 719 (824)
++ .+.+||+
T Consensus 317 dg-----~i~vwdl 325 (325)
T d1pgua1 317 DG-----TLNFYEL 325 (325)
T ss_dssp TS-----CEEEEET
T ss_pred CC-----EEEEEEC
Confidence 65 4666663
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=86.89 E-value=3 Score=40.29 Aligned_cols=170 Identities=10% Similarity=-0.071 Sum_probs=89.7
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-C
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-Q 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~ 602 (824)
..++.||..++...+++. ..+.......-+++..+++|.... ..++++|..+..-..+..-+.. -.+++.. +
T Consensus 24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~--v~~~~~spd 96 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGN--VFAMGVDRN 96 (360)
T ss_dssp TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCS--EEEEEECTT
T ss_pred CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCce--EEeeeeccc
Confidence 468888888887777642 223322222236766666554321 3588999999887665432222 2223322 6
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCC-----CccceEEEEeCCCCCE
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGM-----SRMCNGEKYNPVTKTW 677 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~~~~W 677 (824)
++.+++++.+ ..+..++..+.+...+...........+..-+++.+++++.... .....+..+|..+.+=
T Consensus 97 g~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 171 (360)
T d1k32a3 97 GKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171 (360)
T ss_dssp SSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred ccccceeccc-----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence 6666666544 45788888887765543333322222333336666665543221 1234578899887654
Q ss_pred EECCCCCCCCcceEEEEECCEEEEEccCC
Q psy17309 678 SQVPDMYNPRSNFAIEVIDDMIFAIGGFN 706 (824)
Q Consensus 678 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 706 (824)
..+..... .....+...+++.+++++.+
T Consensus 172 ~~~~~~~~-~~~~~~~spdg~~l~~~s~~ 199 (360)
T d1k32a3 172 FAATTENS-HDYAPAFDADSKNLYYLSYR 199 (360)
T ss_dssp EECSCSSS-BEEEEEECTTSCEEEEEESC
T ss_pred eeeccccc-ccccccccCCCCEEEEEeCC
Confidence 44332211 11111222256655666543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=86.58 E-value=14 Score=35.16 Aligned_cols=190 Identities=9% Similarity=-0.079 Sum_probs=102.0
Q ss_pred CceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEecc-CCC-CcceEE
Q psy17309 474 TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MNF-KRCYVS 550 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~-~r~~~~ 550 (824)
...|..+||.++........ ....-++++.. ++.+|+..-.+ ......+..+++.+........ ... .+..-.
T Consensus 60 ~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~ 135 (319)
T d2dg1a1 60 EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM 135 (319)
T ss_dssp TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred CCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCC-CccceeEEEEcCCCceeeeeccCCCcccCCcce
Confidence 45688899988765442111 11223455554 67888874211 1234568888888877655432 222 222222
Q ss_pred EEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeec-CCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 551 TAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIA-PMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
++.-+|.+|+..-.. .......++++++.....+.+. .+..+ .+++.- ++.||+.-- ..+.+++||..
T Consensus 136 ~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~-----~~~~I~~~d~~ 207 (319)
T d2dg1a1 136 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTET-----TANRLHRIALE 207 (319)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEG-----GGTEEEEEEEC
T ss_pred eEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEecc-----cCCceEEEEEc
Confidence 333477888753221 2223567999999888776653 23222 123332 347888743 23578888865
Q ss_pred CCe---EE---EcC-CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 627 CNQ---WT---LIE-PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 627 ~~~---W~---~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
.+. +. ... .......--++++- +|.|||..-. ...|.+||++...-.++
T Consensus 208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEE
Confidence 431 11 111 11111111233332 6889998532 25799999976544444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.23 E-value=22 Score=37.06 Aligned_cols=119 Identities=12% Similarity=0.185 Sum_probs=71.9
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECC-CCc--eEEeccCCCCc--------ceEEEEEECCEEEEEecccCCCCCCe
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAV-TKV--WKEIAPMNFKR--------CYVSTAVHQDVIYAMGGYNGQRRQNS 572 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~-~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 572 (824)
=+++++.||+..+.. +.++.+|.. |++ |+.-+..+... ..-.++..+++||+... ...
T Consensus 58 P~v~~g~vyv~t~~~-----~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~------~g~ 126 (571)
T d2ad6a1 58 PLVIGDMMYVHSAFP-----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGH 126 (571)
T ss_dssp CEEETTEEEEECSTT-----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred CEEECCEEEEecCCC-----CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC------CCc
Confidence 346799999986532 458888864 454 87543322211 11235677899887532 257
Q ss_pred EEEEeCCCCc--EEe-ecC-CCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 573 VEKYNYTENQ--WSL-IAP-MNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 573 ~~~yd~~t~~--W~~-~~~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
++.+|..|.+ |+. +.. -+......+-+++++++|+-+..........+..||..|++ |+.-
T Consensus 127 l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 8899999875 764 222 12222233346778998875443222334679999999875 8643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=85.68 E-value=15 Score=36.75 Aligned_cols=181 Identities=10% Similarity=-0.071 Sum_probs=96.8
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEE
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 550 (824)
....+..+|..+.+-... . +....-|+++.. +.++|+. +.+ ..+..+|..+.+-.....++.......
T Consensus 40 d~g~v~v~D~~t~~v~~~--~--~~g~~~~~v~fSpDG~~l~~~-s~d-----g~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTV--L--DTGYAVHISRLSASGRYLFVI-GRD-----GKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp TTTEEEEEETTTCCEEEE--E--ECSSCEEEEEECTTSCEEEEE-ETT-----SEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CCCEEEEEECCCCcEEEE--E--eCCCCeeEEEECCCCCEEEEE-cCC-----CCEEEEEeeCCCceEEEEEecCCCCCC
Confidence 345788999999876552 1 122334555555 4556654 432 468899988876544444433322223
Q ss_pred EEEE-----CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-----------CcccCceEEEEECC-EEEEEcccC
Q psy17309 551 TAVH-----QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-----------NVERSDASATTLQG-KIYITGGFN 612 (824)
Q Consensus 551 ~~~~-----~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-----------p~~r~~~~~~~~~~-~lyv~GG~~ 612 (824)
++.. +| .||+.+.. ...+..+|..+.+-....+. +.+|....+...++ .+++....
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~-----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~- 183 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE- 183 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-
T ss_pred eEEecccCCCCCEEEEEcCC-----CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-
Confidence 3221 34 57776653 25688899998876543221 12222211222233 44444322
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HEC-IYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
...+..+|..+.+-..+..++....-+..+.. +|+ +|+.... .+.+...|..+.+..
T Consensus 184 ----~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~-----~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 184 ----TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLV 242 (432)
T ss_dssp ----TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEE
T ss_pred ----CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc-----cceEEEeecccceEE
Confidence 24677888776554444444444444444444 455 4444432 356778888776544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=14 Score=33.42 Aligned_cols=220 Identities=10% Similarity=0.146 Sum_probs=107.2
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
+..++.|+.+ ..+..||..+.+-...-. .....-.++..++.+++.||.++ .+..++..++.....
T Consensus 25 ~~~l~sgs~D-----g~i~vWd~~~~~~~~~l~----~H~~~V~~v~~~~~~l~s~s~D~-----~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 25 DQKIVSGLRD-----NTIKIWDKNTLECKRILT----GHTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTGEMLNT 90 (293)
T ss_dssp SSEEEEEESS-----SCEEEEESSSCCEEEEEC----CCSSCEEEEECCSSEEEEEETTS-----CEEEEESSSCCEEEE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEEEe----cCCCCEeeeecccceeecccccc-----ccccccccccccccc
Confidence 3455666542 357788988776543211 11111222334677778887653 578888888776544
Q ss_pred ccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcE-EeecCCCcccCceEE-EEECCEEEEEcccCCCCcC
Q psy17309 540 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQW-SLIAPMNVERSDASA-TTLQGKIYITGGFNGHNCL 617 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~ 617 (824)
...... .........+.+. .++. ...+..+|..+..- .....+......... ......+.. ++.+
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~d----- 157 (293)
T d1p22a2 91 LIHHCE-AVLHLRFNNGMMV-TCSK-----DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS-ASGD----- 157 (293)
T ss_dssp ECCCCS-CEEEEECCTTEEE-EEET-----TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE-EETT-----
T ss_pred cccccc-cccccccccccee-eccc-----ccceeEeeccccccccccccccccccccccceeccccccc-ccCC-----
Confidence 332221 1112222233333 3332 13455566554331 111111222222222 223444443 3332
Q ss_pred CceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECC
Q psy17309 618 NSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 697 (824)
Q Consensus 618 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 697 (824)
..+..+|..+.+-... +.........+..++..++.|+.+ ..+..||+.+.+-...... ..........++
T Consensus 158 ~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~ 228 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRVLEG--HEELVRCIRFDN 228 (293)
T ss_dssp SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEECC--CSSCEEEEECCS
T ss_pred CceeeecCCCCcEEEE--EcccccccccccCCCCeEEEecCC-----CEEEEEecccceeeeeecc--cceeeeeccccc
Confidence 4678888877653221 111222233344456666777654 4578899887665443221 112233445577
Q ss_pred EEEEEccCCCCceeeEEEEEECC
Q psy17309 698 MIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 698 ~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..++.|+.++ .+.+||..
T Consensus 229 ~~l~sg~~dg-----~i~iwd~~ 246 (293)
T d1p22a2 229 KRIVSGAYDG-----KIKVWDLV 246 (293)
T ss_dssp SEEEEEETTS-----CEEEEEHH
T ss_pred eEEEEEcCCC-----EEEEEECC
Confidence 7788888765 46667643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=83.98 E-value=27 Score=36.26 Aligned_cols=116 Identities=14% Similarity=0.247 Sum_probs=72.6
Q ss_pred EEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--------CcceEEEEEECCEEEEEecccCCCCCCeEE
Q psy17309 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--------KRCYVSTAVHQDVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 505 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 574 (824)
++.++.||+... .+.++++|..|++ |+.-+..+. ....-+.+..++++|+... -..++
T Consensus 74 iv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~------~g~l~ 141 (573)
T d1kb0a2 74 VVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLI 141 (573)
T ss_dssp EEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEE
T ss_pred EEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec------cccee
Confidence 567999998754 3569999999886 875433221 1122346677888887642 24688
Q ss_pred EEeCCCCc--EEeec-CCCcc--cCceEEEEECCEEEEEcccCC-CCcCCceEEEeCCCCe--EEEc
Q psy17309 575 KYNYTENQ--WSLIA-PMNVE--RSDASATTLQGKIYITGGFNG-HNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 575 ~yd~~t~~--W~~~~-~~p~~--r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~ 633 (824)
.+|..+.+ |+.-. +.+.. ....+-.++++.+++ |+... ......+..||..|++ |+.-
T Consensus 142 alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred eeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeeee
Confidence 89988875 76532 22222 122334566888776 44322 2334579999999976 7753
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=83.48 E-value=5.5 Score=41.92 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=72.9
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--------ccCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--------ERSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--------~r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
=++.+|.||+..+. ..++.+|..|.+ |+.-+..+. .......+..+++||+... ...+
T Consensus 62 Piv~~g~vyv~t~~------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~g~l 129 (560)
T d1kv9a2 62 PLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (560)
T ss_dssp CEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CEEECCEEEEECCC------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC------CCEE
Confidence 36789999997653 578899998875 875433221 1223345566888887532 2468
Q ss_pred EEEeCCCCe--EEEcCCCCC-C-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEE
Q psy17309 621 EVYDPECNQ--WTLIEPMRH-R-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 621 ~~yd~~~~~--W~~~~~~p~-~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (824)
..+|..+++ |+....-+. . ....+-+++++.+++-+..........+..||.++.+ |+.
T Consensus 130 ~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 194 (560)
T d1kv9a2 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (560)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence 889988874 766432221 1 2223445678887765443333334579999998875 654
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.23 E-value=1.3 Score=36.03 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=34.1
Q ss_pred HHHHHHHHhh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17309 293 QDLCCDFIKR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILR 334 (824)
Q Consensus 293 ~~~c~~~l~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~ 334 (824)
.+...+|+-. .++.+|...++.+|+.++++.|.+.|.+|+..
T Consensus 75 f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3444556633 46899999999999999999999999999853
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=81.53 E-value=13 Score=34.61 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=53.4
Q ss_pred ceEEEEECCCCceE-EeccCCCCcceEEEEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCc----ccCce
Q psy17309 524 NSCRCFNAVTKVWK-EIAPMNFKRCYVSTAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV----ERSDA 596 (824)
Q Consensus 524 ~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~----~r~~~ 596 (824)
+.+.++|..+.+-. .++.......-.+++.. +| .+|+.|+. ...+..||..+++....-+.+. ....+
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~-----~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~ 85 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecCCCccccccee
Confidence 67899999987633 33222122222233333 44 67787653 2579999999987644322221 12222
Q ss_pred EEEEE--CCEEEEEcccCC------CCcCCceEEEeCCCCeE
Q psy17309 597 SATTL--QGKIYITGGFNG------HNCLNSCEVYDPECNQW 630 (824)
Q Consensus 597 ~~~~~--~~~lyv~GG~~~------~~~~~~v~~yd~~~~~W 630 (824)
.++.. ++.+|+.+.... ......+..+|..+..=
T Consensus 86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (337)
T d1pbyb_ 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence 33333 345555443211 01235667788887653
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.65 E-value=1.1 Score=36.63 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.2
Q ss_pred HHHHHHhh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17309 295 LCCDFIKR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILR 334 (824)
Q Consensus 295 ~c~~~l~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~ 334 (824)
...+|+.. .++.+|+..++.+|+.++++.|.+.|.+|+..
T Consensus 79 ~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 79 ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp HHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 33455543 47899999999999999999999999999864
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.48 E-value=0.27 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=36.2
Q ss_pred ccccccccceeEEeeecccchhhhheeec-----cc------ceecCHhhHHHHHHHHhhcCh
Q psy17309 238 GYNGQRRQNSVEKYNYTENQDKIEEKKLF-----ER------KLHITEDNVASLLLATDFFCM 289 (824)
Q Consensus 238 g~~~e~~~~~i~l~~~~~~~~~~ll~~~Y-----t~------~l~l~~~~v~~ll~~a~~~~i 289 (824)
+.+.+...+.|.+++++...++.+++|+. .. +..+..+.+.+|+.||++|+.
T Consensus 34 ~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd~ 96 (96)
T d2c9wc1 34 GQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp --------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhcC
Confidence 34466677889999999999999999984 21 335777889999999998863
|